F-group (family)
2004.1.1.16 Arf
Ligands and drugs
1,107
Member domains
387
with ligand contacts (≤ 4 Å)
35.0% of members
349
with DrugDomain annotations
31.5% of members
348
with a DrugBank compound
31.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.1.1.16 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 174 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 103 |
| DB02082 | GNP | Phosphoaminophosphonic acid guanylate ester | 45 |
| DB04121 | G3D | Guanosine-3'-monophosphate-5'-diphosphate | 11 |
| DB04022 | G4P | Guanosine tetraphosphate | 9 |
| DB01864 | GSP | 5'-Guanosine-Diphosphate-Monothiophosphate | 5 |
| DB07348 | AFB | Brefeldin A | 5 |
| DB03345 | BME | Mercaptoethanol | 3 |
| DB02774 | PDO | 1,3-Propanediol | 2 |
| DB04444 | ALF | Tetrafluoroaluminate Ion | 2 |
| DB08231 | — | Myristic acid | 2 |
| DB03814 | — | 2-(N-morpholino)ethanesulfonic acid | 1 |
| DB08217 | MTN | S-[(1-Hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate | 1 |
| DB09093 | — | Chlortetracycline | 1 |
| DB09462 | — | Glycerin | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 313 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 195 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 113 |
| GNP | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 45 |
| GSP | 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE | 14 |
| UNX | UNKNOWN ATOM OR ION | 12 |
| G3D | GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE | 11 |
| G4P | GUANOSINE-5',3'-TETRAPHOSPHATE | 9 |
| AF3 | ALUMINUM FLUORIDE | 4 |
| AFB | 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE | 4 |
| HGmetal | MERCURY (II) ION | 4 |
| BME | BETA-MERCAPTOETHANOL | 3 |
| CL | CHLORIDE ION | 3 |
| PBmetal | LEAD (II) ION | 3 |
| ALF | TETRAFLUOROALUMINATE ION | 2 |
| CAmetal | CALCIUM ION | 2 |
| CDmetal | CADMIUM ION | 2 |
| BEF | BERYLLIUM TRIFLUORIDE ION | 1 |
| IOD | IODIDE ION | 1 |
| Kmetal | POTASSIUM ION | 1 |