T-group (topology)
2004.1.2 PEP carboxykinase catalytic C-terminal domain
Ligands and drugs
823
Member domains
152
with ligand contacts (≤ 4 Å)
18.5% of members
131
with DrugDomain annotations
15.9% of members
116
with a DrugBank compound
14.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.1.2 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 27 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 23 |
| DB00171 | ATP | ATP | 21 |
| DB01819 | PEP | Phosphoenolpyruvate | 13 |
| DB02156 | SPV | Sulfopyruvate | 10 |
| DB02726 | PGA | 2-Phosphoglycolic Acid | 9 |
| DB00119 | PYR | Pyruvic acid | 7 |
| DB02637 | OAA | Oxaloacetate Ion | 5 |
| DB09157 | CO2 | Carbon dioxide | 5 |
| DB02175 | MLA | Malonic acid | 4 |
| DB03902 | OXD | Oxalic Acid | 4 |
| DB02249 | ETX | 2-Ethoxyethanol | 3 |
| DB00529 | PPF | Foscarnet | 2 |
| DB03725 | GCP | 5'-Guanylylmethylenebisphosphonate | 2 |
| DB16833 | ADP | Adenosine disphosphate | 2 |
| DB01796 | NTM | Quinolinic Acid | 1 |
| DB02008 | FTB | 1-(2-Fluorobenzyl)-3-Butyl-8-(N-Acetyl-4-Aminobenzyl)-Xanthine | 1 |
| DB02082 | GNP | Phosphoaminophosphonic acid guanylate ester | 1 |
| DB03267 | TSX | 1-Allyl-3-Butyl-8-(N-Acetyl-4-Aminobenzyl)-Xanthine | 1 |
| DB03345 | BME | Mercaptoethanol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MNmetal | MANGANESE (II) ION | 111 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 37 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 28 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 22 |
| MGmetal | MAGNESIUM ION | 21 |
| CAmetal | CALCIUM ION | 18 |
| SPV | SULFOPYRUVATE | 16 |
| PEP | PHOSPHOENOLPYRUVATE | 15 |
| PGA | 2-PHOSPHOGLYCOLIC ACID | 14 |
| PYR | PYRUVIC ACID | 7 |
| THJ | THIOSULFATE | 6 |
| CO2 | CARBON DIOXIDE | 5 |
| OAA | OXALOACETATE ION | 5 |
| 1WD | 3-sulfanylpyridine-2-carboxylic acid | 4 |
| MLA | MALONIC ACID | 4 |
| NAmetal | SODIUM ION | 4 |
| OXD | OXALIC ACID | 4 |
| CL | CHLORIDE ION | 3 |
| ETX | 2-ETHOXYETHANOL | 3 |
| 03S | methanesulfonic acid | 2 |