ECOD
F-group (family)

2004.1.2.1 PEPCK_GTP

Open in classification tree →Pfam PF00821 →

Ligands and drugs

228
Member domains
103
with ligand contacts (≤ 4 Å)
45.2% of members
83
with DrugDomain annotations
36.4% of members
75
with a DrugBank compound
32.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2004.1.2.1 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04137GTPGuanosine-5'-Triphosphate27
DB04315GDPGuanosine-5'-Diphosphate23
DB01819PEPPhosphoenolpyruvate13
DB02156SPVSulfopyruvate10
DB02726PGA2-Phosphoglycolic Acid9
DB02175MLAMalonic acid4
DB02249ETX2-Ethoxyethanol3
DB02637OAAOxaloacetate Ion3
DB00119PYRPyruvic acid2
DB00529PPFFoscarnet2
DB03725GCP5'-Guanylylmethylenebisphosphonate2
DB03902OXDOxalic Acid2
DB09157CO2Carbon dioxide2
DB01796NTMQuinolinic Acid1
DB02008FTB1-(2-Fluorobenzyl)-3-Butyl-8-(N-Acetyl-4-Aminobenzyl)-Xanthine1
DB02082GNPPhosphoaminophosphonic acid guanylate ester1
DB03267TSX1-Allyl-3-Butyl-8-(N-Acetyl-4-Aminobenzyl)-Xanthine1
DB033793PP2-Carboxyethylphosphonic Acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
MNmetalMANGANESE (II) ION98
GTPGUANOSINE-5'-TRIPHOSPHATE37
GDPGUANOSINE-5'-DIPHOSPHATE28
SPVSULFOPYRUVATE16
PEPPHOSPHOENOLPYRUVATE15
PGA2-PHOSPHOGLYCOLIC ACID14
1WD3-sulfanylpyridine-2-carboxylic acid4
MGmetalMAGNESIUM ION4
MLAMALONIC ACID4
ETX2-ETHOXYETHANOL3
NAmetalSODIUM ION3
OAAOXALOACETATE ION3
CLCHLORIDE ION2
CO2CARBON DIOXIDE2
GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER2
OXDOXALIC ACID2
PPFPHOSPHONOFORMIC ACID2
PYRPYRUVIC ACID2
ZNmetalZINC ION2
3PP3-PHOSPHONOPROPANOIC ACID1