PDB 5GMK
ELECTRON MICROSCOPY0 chains46 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain aview chain
1 domainChain Aview chain
5 domainsChain bview chain
1 domainChain cview chain
2 domainsChain Cview chain
5 domainsChain dview chain
1 domainChain eview chain
1 domainChain gview chain
1 domainChain hview chain
1 domainChain Hview chain
1 domainChain iview chain
1 domainChain jview chain
1 domainChain Jview chain
1 domainChain kview chain
1 domainChain lview chain
1 domainChain mview chain
1 domainChain nview chain
1 domainChain oview chain
1 domainChain Oview chain
1 domainChain pview chain
1 domainChain qview chain
2 domainsChain Qview chain
2 domainsChain rview chain
1 domainChain Rview chain
2 domainsChain sview chain
1 domainChain Tview chain
1 domainChain uview chain
1 domainChain vview chain
1 domainChain wview chain
1 domainChain xview chain
1 domainChain yview chain
1 domainChain zview chain
1 domainChain Zview chain
2 domainsAll Domains (46)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5gmka1 | a:29-111 | RRM_5 | 304 → 304.9 → 304.9.1 |
| 2 | A | e5gmkA1 | A:127-884 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 3 | A | e5gmkA2 | A:885-1255 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 4 | A | e5gmkA3 | A:1829-2085 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 5 | A | e5gmkA4 | A:1575-1577,A:1599-1828 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 6 | A | e5gmkA5 | A:1256-1574 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 7 | b | e5gmkb1 | b:1-162 | LRR_9 | 207 → 207.1 → 207.1.1 |
| 8 | c | e5gmkc1 | c:60-111 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 9 | c | e5gmkc2 | c:9-59 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 10 | C | e5gmkC1 | C:102-439 | GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 11 | C | e5gmkC2 | C:440-510,C:530-589 | 1.1.7.0 | 1 → 1.1 → 1.1.7 |
| 12 | C | e5gmkC3 | C:859-975 | EFG_C | 304 → 304.24 → 304.24.1 |
| 13 | C | e5gmkC4 | C:590-674 | 304.24.1.0 | 304 → 304.24 → 304.24.1 |
| 14 | C | e5gmkC5 | C:675-858 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 15 | d | e5gmkd1 | d:36-275 | HAT, HAT_Syf1_CNRKL1_N | 109 → 109.4 → 109.4.1 |
| 16 | e | e5gmke1 | e:44-108 | LSM | 4 → 4.1 → 4.1.1 |
| 17 | g | e5gmkg1 | g:15-108 | LSM | 4 → 4.1 → 4.1.1 |
| 18 | h | e5gmkh1 | h:12-83 | LSM | 4 → 4.1 → 4.1.1 |
| 19 | H | e5gmkH1 | H:30-96 | Isy1 | 192 → 192.13 → 192.13.1 |
| 20 | i | e5gmki1 | i:10-92 | LSM | 4 → 4.1 → 4.1.1 |
| 21 | j | e5gmkj1 | j:2-76 | LSM | 4 → 4.1 → 4.1.1 |
| 22 | J | e5gmkJ1 | J:60-111 | cwf21 | 6026 → 6026.1 → 6026.1.1 |
| 23 | k | e5gmkk1 | k:4-55,k:75-102 | LSM | 4 → 4.1 → 4.1.1 |
| 24 | l | e5gmkl1 | l:4-85 | LSM | 4 → 4.1 → 4.1.1 |
| 25 | m | e5gmkm1 | m:1-48,m:76-109 | LSM | 4 → 4.1 → 4.1.1 |
| 26 | n | e5gmkn1 | n:151-455 | WD40 | 5 → 5.1 → 5.1.4 |
| 27 | o | e5gmko1 | o:1-52 | U-box | 376 → 376.1 → 376.1.1 |
| 28 | O | e5gmkO1 | O:111-447 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 29 | p | e5gmkp1 | p:1-52 | U-box | 376 → 376.1 → 376.1.1 |
| 30 | q | e5gmkq1 | q:144-493 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 31 | q | e5gmkq2 | q:1-61 | U-box | 376 → 376.1 → 376.1.1 |
| 32 | Q | e5gmkQ1 | Q:3-126 | STL11_N | 376 → 376.1 → 376.1.3 |
| 33 | Q | e5gmkQ2 | Q:202-264,Q:288-296 | 304.9.1.0 | 304 → 304.9 → 304.9.1 |
| 34 | r | e5gmkr1 | r:1-51 | U-box | 376 → 376.1 → 376.1.1 |
| 35 | R | e5gmkR1 | R:130-227 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 36 | R | e5gmkR2 | R:1-129 | Torus | 906 → 906.1 → 906.1.1 |
| 37 | s | e5gmks1 | s:6-55,s:75-102 | LSM | 4 → 4.1 → 4.1.1 |
| 38 | T | e5gmkT1 | T:1-157 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 39 | u | e5gmku1 | u:10-92 | LSM | 4 → 4.1 → 4.1.1 |
| 40 | v | e5gmkv1 | v:569-734 | HAT_Syf1_CNRKL1_C | 109 → 109.4 → 109.4.1 |
| 41 | w | e5gmkw1 | w:12-83 | LSM | 4 → 4.1 → 4.1.1 |
| 42 | x | e5gmkx1 | x:2-76 | LSM | 4 → 4.1 → 4.1.1 |
| 43 | y | e5gmky1 | y:4-85 | LSM | 4 → 4.1 → 4.1.1 |
| 44 | z | e5gmkz1 | z:1-48,z:76-109 | LSM | 4 → 4.1 → 4.1.1 |
| 45 | Z | e5gmkZ1 | Z:8-247 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 46 | Z | e5gmkZ2 | Z:279-485 | MA3 | 109 → 109.4 → 109.4.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors