PDB 5OKZ
X-RAY DIFFRACTION3.20 Å0 chains80 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsChain Zview chain
2 domainsAll Domains (80)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5okza1 | a:1-63 | Rrp40_N | 325 → 325.1 → 325.1.8 |
| 2 | a | e5okza2 | a:152-235 | KH_6 | 327 → 327.11 → 327.11.2 |
| 3 | a | e5okza3 | a:62-151 | RRP40_S1 | 2 → 2.1 → 2.1.1 |
| 4 | A | e5okzA1 | A:3-186 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 5 | A | e5okzA2 | A:187-297 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 6 | b | e5okzb1 | b:196-243,b:275-355 | KH_6 | 327 → 327.11 → 327.11.2 |
| 7 | b | e5okzb2 | b:51-101 | ECR1_N | 325 → 325.1 → 325.1.8 |
| 8 | b | e5okzb3 | b:102-196 | RRP4_S1 | 2 → 2.1 → 2.1.1 |
| 9 | B | e5okzB1 | B:153-244 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 10 | B | e5okzB2 | B:3-152 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 11 | c | e5okzc1 | c:126-162,c:185-291 | EXOSC1 | 2 → 2.1 → 2.1.1 |
| 12 | c | e5okzc2 | c:1-65,c:109-115 | CSL4_N | 325 → 325.1 → 325.1.8 |
| 13 | C | e5okzC1 | C:16-99,C:121-249,C:270-286 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 14 | C | e5okzC2 | C:287-306,C:326-393 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 15 | D | e5okzD1 | D:126-222 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 16 | D | e5okzD2 | D:2-125 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 17 | e | e5okze1 | e:3-186 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 18 | e | e5okze2 | e:187-297 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 19 | E | e5okzE1 | E:181-263 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 20 | E | e5okzE2 | E:0-180 | 212.1.1.0 | 212 → 212.1 → 212.1.1 |
| 21 | f | e5okzf1 | f:3-152 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 22 | f | e5okzf2 | f:153-244 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 23 | F | e5okzF1 | F:6-21,F:44-185 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 24 | F | e5okzF2 | F:183-247 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 25 | g | e5okzg1 | g:14-99,g:121-249,g:270-286 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 26 | g | e5okzg2 | g:287-306,g:326-393 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 27 | G | e5okzG1 | G:62-151 | RRP40_S1 | 2 → 2.1 → 2.1.1 |
| 28 | G | e5okzG2 | G:0-63 | Rrp40_N | 325 → 325.1 → 325.1.8 |
| 29 | G | e5okzG3 | G:152-237 | KH_6 | 327 → 327.11 → 327.11.2 |
| 30 | h | e5okzh1 | h:126-223 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 31 | h | e5okzh2 | h:1-125 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 32 | H | e5okzH1 | H:102-196 | RRP4_S1 | 2 → 2.1 → 2.1.1 |
| 33 | H | e5okzH2 | H:52-101 | ECR1_N | 325 → 325.1 → 325.1.8 |
| 34 | H | e5okzH3 | H:196-244,H:277-355 | KH_6 | 327 → 327.11 → 327.11.2 |
| 35 | i | e5okzi1 | i:181-265 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 36 | i | e5okzi2 | i:1-180 | 212.1.1.0 | 212 → 212.1 → 212.1.1 |
| 37 | I | e5okzI1 | I:11-68,I:106-115 | CSL4_N | 325 → 325.1 → 325.1.8 |
| 38 | I | e5okzI2 | I:126-160,I:187-290 | EXOSC1 | 2 → 2.1 → 2.1.1 |
| 39 | j | e5okzj1 | j:183-247 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 40 | j | e5okzj2 | j:5-20,j:43-185 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 41 | k | e5okzk1 | k:152-235 | KH_6 | 327 → 327.11 → 327.11.2 |
| 42 | k | e5okzk2 | k:2-63 | Rrp40_N | 325 → 325.1 → 325.1.8 |
| 43 | k | e5okzk3 | k:62-151 | RRP40_S1 | 2 → 2.1 → 2.1.1 |
| 44 | K | e5okzK1 | K:3-186 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 45 | K | e5okzK2 | K:187-297 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 46 | l | e5okzl1 | l:196-245,l:276-355 | KH_6 | 327 → 327.11 → 327.11.2 |
| 47 | l | e5okzl2 | l:102-196 | RRP4_S1 | 2 → 2.1 → 2.1.1 |
| 48 | l | e5okzl3 | l:52-101 | ECR1_N | 325 → 325.1 → 325.1.8 |
| 49 | L | e5okzL1 | L:153-241 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 50 | L | e5okzL2 | L:2-152 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 51 | m | e5okzm1 | m:120-161,m:187-291 | EXOSC1 | 2 → 2.1 → 2.1.1 |
| 52 | m | e5okzm2 | m:8-65,m:107-119 | CSL4_N | 325 → 325.1 → 325.1.8 |
| 53 | M | e5okzM1 | M:19-99,M:121-249,M:270-286 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 54 | M | e5okzM2 | M:287-306,M:326-393 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 55 | N | e5okzN1 | N:2-125 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 56 | N | e5okzN2 | N:126-223 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 57 | O | e5okzO1 | O:181-265 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 58 | O | e5okzO2 | O:0-180 | 212.1.1.0 | 212 → 212.1 → 212.1.1 |
| 59 | P | e5okzP1 | P:183-247 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 60 | P | e5okzP2 | P:5-20,P:43-185 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 61 | Q | e5okzQ1 | Q:2-63 | Rrp40_N | 325 → 325.1 → 325.1.8 |
| 62 | Q | e5okzQ2 | Q:62-151 | RRP40_S1 | 2 → 2.1 → 2.1.1 |
| 63 | Q | e5okzQ3 | Q:152-235 | KH_6 | 327 → 327.11 → 327.11.2 |
| 64 | R | e5okzR1 | R:196-245,R:278-355 | KH_6 | 327 → 327.11 → 327.11.2 |
| 65 | R | e5okzR2 | R:51-101 | ECR1_N | 325 → 325.1 → 325.1.8 |
| 66 | R | e5okzR3 | R:102-196 | RRP4_S1 | 2 → 2.1 → 2.1.1 |
| 67 | S | e5okzS1 | S:126-162,S:185-291 | EXOSC1 | 2 → 2.1 → 2.1.1 |
| 68 | S | e5okzS2 | S:1-68,S:106-115 | CSL4_N | 325 → 325.1 → 325.1.8 |
| 69 | U | e5okzU1 | U:187-297 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 70 | U | e5okzU2 | U:3-186 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 71 | V | e5okzV1 | V:153-243 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 72 | V | e5okzV2 | V:3-152 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 73 | W | e5okzW1 | W:287-304,W:326-394 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 74 | W | e5okzW2 | W:15-99,W:121-249,W:270-286 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 75 | X | e5okzX1 | X:1-125 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 76 | X | e5okzX2 | X:126-223 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 77 | Y | e5okzY1 | Y:1-180 | 212.1.1.0 | 212 → 212.1 → 212.1.1 |
| 78 | Y | e5okzY2 | Y:181-265 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 79 | Z | e5okzZ1 | Z:5-21,Z:43-185 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 80 | Z | e5okzZ2 | Z:183-247 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors