Citrus Sinensis ID: 000047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2693 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UTN6 | 1199 | Chromatin structure-remod | yes | no | 0.273 | 0.614 | 0.432 | 0.0 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | no | no | 0.296 | 0.475 | 0.406 | 1e-178 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.310 | 0.509 | 0.382 | 1e-175 | |
| P22082 | 1703 | Transcription regulatory | yes | no | 0.306 | 0.484 | 0.394 | 1e-174 | |
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.219 | 0.374 | 0.498 | 1e-169 | |
| P32597 | 1359 | Nuclear protein STH1/NPS1 | no | no | 0.304 | 0.604 | 0.399 | 1e-168 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.219 | 0.371 | 0.5 | 1e-168 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.227 | 0.372 | 0.457 | 1e-168 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.228 | 0.383 | 0.480 | 1e-167 | |
| Q3TKT4 | 1613 | Transcription activator B | no | no | 0.228 | 0.381 | 0.480 | 1e-167 |
| >sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 | Back alignment and function desciption |
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Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/783 (43%), Positives = 504/783 (64%), Gaps = 46/783 (5%)
Query: 849 SAKTKSVIELKKLQLLGLQRRLRNDFLND--FFKPITTDMDRLKSYKKHRHGRRIKQLEK 906
+ K +++ELKKL+L+ Q LR+ ++ + I ++R+ + + + E
Sbjct: 192 TIKRNALVELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEV 251
Query: 907 FEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIH 966
E++ + +R++R++++Q ++ + AH ++ K + R + N+ V +H E+
Sbjct: 252 LERQQRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEE 311
Query: 967 REKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGS--KLQEAKS 1024
+ + +R ++++ LK ND E YL+++ AK R+ LL++T+ YL L + K+Q+++
Sbjct: 312 QRRAERNAKQRLQALKENDEEAYLKLIDQAKDTRITHLLRQTDHYLDSLAAAVKVQQSQF 371
Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
S ++ +MD + P E++ + D YY +AH+I+E V+EQP+
Sbjct: 372 GESAYDEDMDR--------RMNP--EDDRKID-----------YYNVAHNIREVVTEQPS 410
Query: 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFL 1144
L GGKL+EYQ+ GL+W++SLYNN LNGILADEMGLGKT+Q I+LI +L+E K GPFL
Sbjct: 411 ILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFL 470
Query: 1145 VVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204
V+VP S L W E WAP I KIVY GPP+ R+ L + + H F VLLTTYEY++
Sbjct: 471 VIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIK- 528
Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWAL 1263
DRP LS+I+W Y+IIDEGHR+KN KL L +Y S +RL+LTGTPLQNNL ELWAL
Sbjct: 529 -DRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWAL 587
Query: 1264 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323
LNF+LP IFNS + F +WFN PF + G D+ L+EEE+LL+I RLH+VLRPF+LRRL
Sbjct: 588 LNFVLPRIFNSIKSFDEWFNTPFANTG--GQDKMELTEEESLLVIRRLHKVLRPFLLRRL 645
Query: 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-------GNSKGRSVHNSVMEL 1376
K VE ELP+K+E+++RC+ S Q+ L +++++ G + G + + + N+VM+L
Sbjct: 646 KKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKH-GMLYVEDAKRGKTGIKGLQNTVMQL 704
Query: 1377 RNICNHPYLSQLHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM 1435
+ ICNHP++ + +D P + + R+ GK E+LDR+LPKL + HR+L F M
Sbjct: 705 KKICNHPFVFEDVERSID---PTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQM 761
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
T+++++MEDYL ++Q+RYLRLDG T DR L+ FN + +FLLS RAGG+G+NL
Sbjct: 762 TQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNL 821
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
Q ADTVIIFD+DWNP DLQAQ RAHRIGQ ++V + R T ++VEE + A A++KL +
Sbjct: 822 QTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDID 881
Query: 1556 NQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPV---LDDDALNDLLARSESEIDVF 1612
+ I AG FDN ++ E+R +L SLL EE LDDD LN++LAR + E+ +F
Sbjct: 882 GKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEILARGDDELRLF 941
Query: 1613 ESV 1615
+ +
Sbjct: 942 KQM 944
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Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
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Score = 626 bits (1615), Expect = e-178, Method: Compositional matrix adjust.
Identities = 360/886 (40%), Positives = 523/886 (59%), Gaps = 88/886 (9%)
Query: 851 KTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQ------- 903
K+KS+IEL+ L+LL QR LR + + D L + R +K+
Sbjct: 641 KSKSMIELRCLRLLEKQRSLR-----ETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEAN 695
Query: 904 -LEKFEQKMKEERQKRIRERQKEFFSEIEAHKE----RLDEVFKIKRERWRGVNKYVKEF 958
+ +K K E R +E+ I H++ ++D+ K K +R + + F
Sbjct: 696 LVLALAEKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDI----INF 751
Query: 959 HKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKL--G 1016
H E+ +++I+R R+++ L+ +D YL+++ AK R+ LLK+T++YL+ L
Sbjct: 752 HAHLEKEEKKRIERSARQRLQALRADDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRA 811
Query: 1017 SKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIK 1076
++Q++ + + + + + E + ED+ N Y+ +AH I
Sbjct: 812 VRIQQSNIHSGNTSGKGSNSAEL------EAPISEEDK----------NLDYFKVAHRIH 855
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136
E V EQP GG L++YQ+ GL W++SLYNN LNGILADEMGLGKT+Q IA I YL+E
Sbjct: 856 EEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEK 914
Query: 1137 KNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLT 1196
KN +GPFL++VP S L W E WAP + KI Y GPP+ R+ L + +I FNVLLT
Sbjct: 915 KNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTL-QSQIRSSNFNVLLT 973
Query: 1197 TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQN 1255
T+EY++ DRP LS+I+W ++IIDEGHRIKN KL + L +Y S +RL+LTGTPLQN
Sbjct: 974 TFEYIIK--DRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQN 1031
Query: 1256 NLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315
NL ELWALLNF+LP IFNS + F +WFN PF + G D+ L+EEE LLII RLH+VL
Sbjct: 1032 NLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQ--DKIGLNEEEALLIIKRLHKVL 1089
Query: 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQ-KLLMKRVEENLGSIGNSKGRS----VH 1370
RPF+ RRLK VE ELP+K+E++++C S Q KL + + + + KG++ +
Sbjct: 1090 RPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGIKGLQ 1149
Query: 1371 NSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIVRLCGKLEMLDRLLPKLKATDHR 1428
N+VM+L+ ICNHP++ E+V+ I + + R GK E+LDR+LPKL T H+
Sbjct: 1150 NTVMQLKKICNHPFI----FEDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFLTGHK 1205
Query: 1429 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488
L F MT+++ +MEDYL K ++YLRLDG T DR +L+ +FN S +IF+LS RA
Sbjct: 1206 TLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRA 1265
Query: 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548
GG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHRIGQ ++V +LR T +++EE + + A
Sbjct: 1266 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRA 1325
Query: 1549 EHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPV---LDDDALNDLLARS 1605
++KL + + I AG FDN ++ E+R +L SLL ++ L DD LN+L++R+
Sbjct: 1326 QYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRT 1385
Query: 1606 ESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYD 1665
+ E+ +F+ +DK+R + I G G+PL RL+T ++L Y
Sbjct: 1386 DEELVLFKKLDKERAATD-------IYG---KGKPL----ERLLTVNELPDFY------- 1424
Query: 1666 APKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEE 1711
K V + V+ E L+ Q+ R +R R SY E +E
Sbjct: 1425 --KVEVD-SFAVQSSSE----LEDQYLERKRRRRNSISYTELTLDE 1463
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Helicase. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
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Score = 617 bits (1590), Expect = e-175, Method: Compositional matrix adjust.
Identities = 376/983 (38%), Positives = 560/983 (56%), Gaps = 148/983 (15%)
Query: 843 SSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMD-RLKSYKK-HRHG-R 899
+ SED+ + ++ IEL+ L++L QR+LR +F+ + T + +K YK+ R G R
Sbjct: 432 TMSEDL--RLQAAIELRALRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLR 489
Query: 900 RIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFH 959
+ EK E++ K E +++ R++ EF + + H + L E + + + +NK V H
Sbjct: 490 EARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHH 549
Query: 960 --------KRKERIHREKIDRI--------------QREKINLLKINDVEGYL----RMV 993
K +ERI +E++ R+ +++K ++ + Y+ +MV
Sbjct: 550 ANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMV 609
Query: 994 QDAKSDRVNKLLKETEKYLQ------------------------------KLGSKLQ-EA 1022
+ K D++ K +E ++ +Q G KL +
Sbjct: 610 KQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDD 669
Query: 1023 KSMASHFENEM----------DETQTVSVVEKYEPAVE-----NEDESDQAK-------- 1059
M H + DE + + ++P VE ED +D+A+
Sbjct: 670 APMLKHLHRWLNMHPGWDWIDDEEDSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDA 729
Query: 1060 ------------HYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYN 1107
Y + YY +AH+I E V EQ + + G L+EYQ+ GL WLVSLYN
Sbjct: 730 KDLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYN 789
Query: 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167
N LNGILADEMGLGKT+Q I+L+ YLM+ K GP+L++VP S LP W E WAP +
Sbjct: 790 NNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVG 849
Query: 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227
+ Y G P+ RR L + ++ KFNVLLTTYEY++ D+ L+KIQW Y+IIDEGHR+K
Sbjct: 850 VVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIK--DKAVLAKIQWKYMIIDEGHRMK 906
Query: 1228 NASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPF 1286
N CKL L HY + +RLLLTGTPLQN L ELWALLNFLLP+IF S F QWFN PF
Sbjct: 907 NHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPF 966
Query: 1287 ESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAY 1346
+ G+ + L+EEE +LII RLH+VLRPF+LRRLK +VE++LP+K+E +++C+ SA
Sbjct: 967 ATTGE----KVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSAL 1022
Query: 1347 QKLLMKRVEEN--LGSIGNSKGRS-------VHNSVMELRNICNHPYLSQLHAEEVDTLI 1397
Q++L K ++ L + G+ KG+ + N++++LR +CNHP++ Q E+
Sbjct: 1023 QRVLYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHT 1082
Query: 1398 PKHYL---PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL 1454
H + P + R+ GK E+LDR+LPKLKAT+HRVL F MT+ + ++EDYL ++Q+ YL
Sbjct: 1083 GGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYL 1142
Query: 1455 RLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDL 1514
RLDG T DRG L+ KFN + S F+FLLS RAGG+G+NLQ ADTV+IFD+DWNP DL
Sbjct: 1143 RLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDL 1202
Query: 1515 QAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRR 1574
QAQ RAHRIGQ+ +V VLR TV +VEE++ A+A +KL + + I AG FD ++ +R+
Sbjct: 1203 QAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQ 1262
Query: 1575 EYLESLLRE--CKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIR 1632
++L+++L + ++EE V DD+ +N ++ARSE EI++F+ +D +R++E+
Sbjct: 1263 QFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKED--------- 1313
Query: 1633 GLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHY 1692
E + P RL+ + +L P + V+R H +
Sbjct: 1314 ------EEIHPGRERLIDESEL------------PDWLTKDDDEVERF--HYQYDEDTIL 1353
Query: 1693 GRGKRAREVRSYEEQWTEEEFEK 1715
GRG R R+ Y + TE+E+ K
Sbjct: 1354 GRGSRQRKEVDYTDSLTEKEWLK 1376
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Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1 | Back alignment and function description |
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Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust.
Identities = 372/942 (39%), Positives = 545/942 (57%), Gaps = 117/942 (12%)
Query: 831 MSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLN-------------- 876
++ C +KL + S + ++ + LQLL LQ+ +R L
Sbjct: 509 VNDCLDKLLNDECTE---STRENALYDYYALQLLPLQKAVRGHVLQFEWHQNSLLTNTHP 565
Query: 877 DFFKPI--TTDMDRLKS---YKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIE 931
+F I D L + YK H +L K E+K K E R++ K S I
Sbjct: 566 NFLSKIRNINVQDALLTNQLYKNH-------ELLKLERK-KTEAVARLKSMNK---SAIN 614
Query: 932 AHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLR 991
+ R D+ K +R + ++ + H ER +++ ++ +E++ LK ND E Y++
Sbjct: 615 QYNRRQDK----KNKRLKFGHRLIAT-HTNLERDEQKRAEKKAKERLQALKANDEEAYIK 669
Query: 992 MVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS-----MASHFENEMDETQTVSVVEKYE 1046
++ K R+ LL++T +L L +++ + + SH + +E +S+V K +
Sbjct: 670 LLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDDLSMVPKMK 729
Query: 1047 PAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLY 1106
++D+ + YY +AH IKE + +QP+ L GG L++YQ+ GL+W+VSL+
Sbjct: 730 DEEYDDDDDNSNV-------DYYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLF 782
Query: 1107 NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRI 1166
NN LNGILADEMGLGKT+Q I+L+ YL E KN RGP+LV+VP S L W SE WAP +
Sbjct: 783 NNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTL 842
Query: 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI 1226
I + G P ER+ + KI +F+V+LTT+EY++ +R LSK++W ++IIDEGHR+
Sbjct: 843 RTISFKGSPNERKAK-QAKIRAGEFDVVLTTFEYIIK--ERALLSKVKWVHMIIDEGHRM 899
Query: 1227 KNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKP 1285
KNA KL+ L HY + +RL+LTGTPLQNNL ELWALLNF+LP IFNS + F +WFN P
Sbjct: 900 KNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTP 959
Query: 1286 FESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASA 1345
F + G D+ LSEEE LL+I RLH+VLRPF+LRRLK VE ELP+K+E++V+C+ SA
Sbjct: 960 FANTG--GQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSA 1017
Query: 1346 YQKLLMKRVEEN----LGSIGNSKG---RSVHNSVMELRNICNHPYLSQLHAEEVDTLI- 1397
Q+++ +++ + +G N K R +N +M+L+ ICNHP++ EEV+ I
Sbjct: 1018 LQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFV----FEEVEDQIN 1073
Query: 1398 -PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRL 1456
+ I R+ GK E+LDR+LPKLKAT HRVL F MT+++D+MED+L + +YLRL
Sbjct: 1074 PTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRL 1133
Query: 1457 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 1516
DGHT +R L+ FN DS + F+LS RAGG+G+NLQ ADTVIIFDTDWNP DLQA
Sbjct: 1134 DGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQA 1193
Query: 1517 QARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 1576
Q RAHRIGQK +V +LR T +VEE + A KL + + I AG FDN +++E++
Sbjct: 1194 QDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEAL 1253
Query: 1577 LESLL-----RECKKEEAA---PVLDDDALNDLLARSESEIDVFESVDKQR--REEEMAT 1626
L SLL R K+E L D +N++LAR++ E+ V +D+ R +EEE+
Sbjct: 1254 LRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELG- 1312
Query: 1627 WRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVG--VKRKGEHL 1684
+ SRL+ +L +Y S ++G +KR+
Sbjct: 1313 -----------------VKSRLLEKSELPDIY-------------SRDIGAELKREESES 1342
Query: 1685 GALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPK 1726
A+ + GRG R R+ +Y + +EE++ + Q E SD K
Sbjct: 1343 AAV---YNGRGARERKTATYNDNMSEEQW--LRQFEVSDDEK 1379
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Involved in transcriptional activation. Catalytic component of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 312/626 (49%), Positives = 415/626 (66%), Gaps = 35/626 (5%)
Query: 1046 EPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSL 1105
E A ++ D+ ++ ++ YY +AH+I E V +Q L G L+ YQ+ GL W+VSL
Sbjct: 684 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 743
Query: 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPR 1165
YNN LNGILADEMGLGKT+Q IALI YLME K GP+L++VP S L W E + WAP
Sbjct: 744 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 803
Query: 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHR 1225
+ KI Y G P RR L + + KFNVLLTTYEY++ D+ L+KI+W Y+I+DEGHR
Sbjct: 804 VVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIK--DKHILAKIRWKYMIVDEGHR 860
Query: 1226 IKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284
+KN CKL L HY + R+LLTGTPLQN L ELWALLNFLLP IF S F QWFN
Sbjct: 861 MKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNA 920
Query: 1285 PFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEAS 1344
PF G+ L+EEE +LII RLH+VLRPF+LRRLK +VE++LPEK+E +++C+ S
Sbjct: 921 PFAMTGERVD----LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 976
Query: 1345 AYQKLLMKRVEEN--LGSIGN-------SKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395
A QK+L + ++ L + G+ +++ N++M+LR ICNHPY+ Q H EE
Sbjct: 977 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-HIEES-- 1033
Query: 1396 LIPKH--YLPPIV------RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1447
+H Y ++ R GK E+LDR+LPKL+AT+HRVL F MT L+ +MEDY
Sbjct: 1034 -FAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFA 1092
Query: 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507
F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS RAGG+G+NLQAADTV+IFD+D
Sbjct: 1093 FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSD 1152
Query: 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN 1567
WNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++ A+A++KL V + I AG FD
Sbjct: 1153 WNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1212
Query: 1568 TSAEDRREYLESLL-RECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMAT 1626
+S+ +RR +L+++L E + EE V DD+ LN ++AR E E D+F +D RR E+
Sbjct: 1213 SSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARN 1272
Query: 1627 WRKLIRGLGTDGEPLPPLPSRLVTDD 1652
++ R + D LPS ++ DD
Sbjct: 1273 PKRKPRLMEEDE-----LPSWIIKDD 1293
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 365/913 (39%), Positives = 542/913 (59%), Gaps = 92/913 (10%)
Query: 831 MSTCFNKL-KESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLND----------FF 879
+ C + K+ +SS D + K K+++ELK L+LL Q+ +R +N+ +
Sbjct: 218 LDDCLEFITKDDLSSRMD-TFKIKALVELKSLKLLTKQKSIRQKLINNVASQAHHNIPYL 276
Query: 880 K--PITTDMDRLKSYKKH----RHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAH 933
+ P T R + + R ++LE+ Q++ E+R+K ++ S I+
Sbjct: 277 RDSPFTAAAQRSVQIRSKVIVPQTVRLAEELER--QQLLEKRKKERNLHLQKINSIIDFI 334
Query: 934 KERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMV 993
KER E + ++ER + H + E+ +++I+R ++++ LK ND E YL+++
Sbjct: 335 KERQSEQWS-RQERCFQFGRLGASLHNQMEKDEQKRIERTAKQRLAALKSNDEEAYLKLL 393
Query: 994 QDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENED 1053
K R+ +LL++T +L L ++ ++ A E + +P + E
Sbjct: 394 DQTKDTRITQLLRQTNSFLDSLSEAVRAQQNEAKILHGE-----------EVQPITDEER 442
Query: 1054 ESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGI 1113
E YY +AH IKE + +QP+ L GG L+EYQ+ GL W+VSLYNN LNGI
Sbjct: 443 EKTD----------YYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGI 492
Query: 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCG 1173
LADEMGLGKT+Q I+LI YL E K D GPFLV+VP S + W E WAP ++ I+Y G
Sbjct: 493 LADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKG 552
Query: 1174 PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233
P +R L + +I F+VLLTTYEY++ D+ LSK W ++IIDEGHR+KNA KL
Sbjct: 553 TPNQRHSL-QHQIRVGNFDVLLTTYEYIIK--DKSLLSKHDWAHMIIDEGHRMKNAQSKL 609
Query: 1234 NADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDN 1292
+ + HY ++ +RL+LTGTPLQNNL ELWALLNF+LP IFNS++ F WFN PF + G
Sbjct: 610 SFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTG-- 667
Query: 1293 SPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK 1352
+ ++ L+EEE LLII RLH+VLRPF+LRRLK +VE +LP+K+E++++C+ S Q+ L +
Sbjct: 668 TQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQ 727
Query: 1353 RVEEN------LGSIGNSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLI--PKHYL 1402
++ ++ G+ G +KG + ++N +M+LR ICNHP++ +EV+ ++ +
Sbjct: 728 QMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFV----FDEVEGVVNPSRGNS 783
Query: 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSG 1462
+ R+ GK E+LDR+LPK KA+ HRVL F MT+++D+MED+L K +Y+RLDG T
Sbjct: 784 DLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKT 843
Query: 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 1522
+R +++ FN DS +F FLLS RAGG+G+NLQ ADTVIIFDTDWNP DLQAQ RAHR
Sbjct: 844 EERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHR 903
Query: 1523 IGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
IGQK +V +LR T +VEE + A KL + + I AG FDN ++AE++ +L L+
Sbjct: 904 IGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIE 963
Query: 1583 E--CKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEP 1640
+ ++ LDDD LND LARS E +F+ +DK+R +E A + G
Sbjct: 964 SETNRDDDDKAELDDDELNDTLARSADEKILFDKIDKERMNQERADAK-------AQGLR 1016
Query: 1641 LPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRARE 1700
+P P RL+ D+L P V + EH D++ GR ++ +
Sbjct: 1017 VP--PPRLIQLDEL------------------PKVFREDIEEHFKKEDSEPLGRIRQKKR 1056
Query: 1701 VRSYEEQWTEEEF 1713
V Y++ TEE+F
Sbjct: 1057 V-YYDDGLTEEQF 1068
|
Catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. RSC is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodeling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signaling pathway, for organization of the cellular cytoskeleton. This subunit is the essential ATPase of the complex. It is a DNA translocase capable of nucleosome remodeling. Required for full expression of early meiotic genes. Essential for mitotic growth and repression of CHA1 expression. Also involved in G2 phase control. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust.
Identities = 313/626 (50%), Positives = 416/626 (66%), Gaps = 35/626 (5%)
Query: 1046 EPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSL 1105
E A ++ D+ ++ ++ YY +AH+I E V +Q L G L+ YQ+ GL W+VSL
Sbjct: 679 ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL 738
Query: 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPR 1165
YNN LNGILADEMGLGKT+Q IALI YLME K GP+L++VP S L W E + WAP
Sbjct: 739 YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS 798
Query: 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHR 1225
+ KI Y G P RR L + + KFNVLLTTYEY++ D+ L+KI+W Y+I+DEGHR
Sbjct: 799 VVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIK--DKHILAKIRWKYMIVDEGHR 855
Query: 1226 IKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284
+KN CKL L HY + R+LLTGTPLQN L ELWALLNFLLP IF S F QWFN
Sbjct: 856 MKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNA 915
Query: 1285 PFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEAS 1344
PF G+ L+EEE +LII RLH+VLRPF+LRRLK +VE++LPEK+E +++C+ S
Sbjct: 916 PFAMTGERVD----LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
Query: 1345 AYQKLLMKRVEEN--LGSIGNSKGR-------SVHNSVMELRNICNHPYLSQLHAEEVDT 1395
A QK+L + ++ L + G+ K + ++ N++M+LR ICNHPY+ Q H EE
Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-HIEES-- 1028
Query: 1396 LIPKH--YLPPIV------RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1447
+H Y ++ R GK E+LDR+LPKL+AT+HRVL F MT L+ +MEDY
Sbjct: 1029 -FAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFA 1087
Query: 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507
F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS RAGG+G+NLQAADTV+IFD+D
Sbjct: 1088 FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSD 1147
Query: 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNN 1567
WNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++ A+A++KL V + I AG FD
Sbjct: 1148 WNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207
Query: 1568 TSAEDRREYLESLL-RECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMAT 1626
+S+ +RR +L+++L E + EE V DD+ LN ++AR E E D+F +D RR E+
Sbjct: 1208 SSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARN 1267
Query: 1627 WRKLIRGLGTDGEPLPPLPSRLVTDD 1652
++ R + D LPS ++ DD
Sbjct: 1268 PKRKPRLMEED-----ELPSWIIKDD 1288
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 593 bits (1528), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/688 (45%), Positives = 428/688 (62%), Gaps = 74/688 (10%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPFL++VP S L W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARR-AFVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNL 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTPLQN L
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317
ELWALLNFLLP IF S F QWFN PF G+ + L+EEE +LII RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE----KVDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGN-------SKGRS 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L + G+ ++
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL--------REC-------- 1584
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L R C
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSAS 1270
Query: 1585 --------------------KKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEM 1624
K+E+ P DD+ +N ++AR E E D+F +D RR EE
Sbjct: 1271 FAHTAPPPAGVNPDLEEPPLKEEDEVP--DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1625 ATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
++ R + D LPS ++ DD
Sbjct: 1329 RNPKRKPRLMEED-----ELPSWIIKDD 1351
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues (By similarity). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust.
Identities = 314/653 (48%), Positives = 426/653 (65%), Gaps = 37/653 (5%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 676 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 733
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 734 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 793
Query: 1139 DRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPFL++VP S L W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARR-AFVPQLRSGKFNVLLTTY 852
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNL 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTPLQN L
Sbjct: 853 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 910
Query: 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317
ELWALLNFLLP IF S F QWFN PF G+ + L+EEE +LII RLH+VLRP
Sbjct: 911 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE----KVDLNEEETILIIRRLHKVLRP 966
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGN-------SKGRS 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L + G+ ++
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1026
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1027 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1142
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1143 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1202
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL-RECKKEEAAPVLDDDALN 1599
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE V DD+ +N
Sbjct: 1203 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVN 1262
Query: 1600 DLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
++AR E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1263 QMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1310
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-fOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust.
Identities = 314/653 (48%), Positives = 426/653 (65%), Gaps = 37/653 (5%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 741
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 742 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 801
Query: 1139 DRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPFL++VP S L W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARR-AFVPQLRSGKFNVLLTTY 860
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNL 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTPLQN L
Sbjct: 861 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317
ELWALLNFLLP IF S F QWFN PF G+ + L+EEE +LII RLH+VLRP
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE----KVDLNEEETILIIRRLHKVLRP 974
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGN-------SKGRS 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L + G+ ++
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1034
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1035 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL-RECKKEEAAPVLDDDALN 1599
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE V DD+ +N
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVN 1270
Query: 1600 DLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
++AR E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1271 QMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDE-----LPSWIIKDD 1318
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2693 | ||||||
| 357478577 | 3312 | Helicase swr1 [Medicago truncatula] gi|3 | 0.789 | 0.642 | 0.562 | 0.0 | |
| 357478579 | 3310 | Helicase swr1 [Medicago truncatula] gi|3 | 0.789 | 0.642 | 0.562 | 0.0 | |
| 224100259 | 3427 | chromatin remodeling complex subunit [Po | 0.604 | 0.475 | 0.690 | 0.0 | |
| 449433367 | 2086 | PREDICTED: uncharacterized protein LOC10 | 0.604 | 0.779 | 0.650 | 0.0 | |
| 297736923 | 2266 | unnamed protein product [Vitis vinifera] | 0.502 | 0.597 | 0.751 | 0.0 | |
| 449495482 | 2108 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.660 | 0.843 | 0.603 | 0.0 | |
| 255551623 | 3502 | conserved hypothetical protein [Ricinus | 0.589 | 0.453 | 0.631 | 0.0 | |
| 20197603 | 3571 | putative SNF2 subfamily transcription re | 0.395 | 0.297 | 0.745 | 0.0 | |
| 30683830 | 3574 | ATPase splayed [Arabidopsis thaliana] gi | 0.396 | 0.298 | 0.746 | 0.0 | |
| 30683833 | 3529 | ATPase splayed [Arabidopsis thaliana] gi | 0.396 | 0.302 | 0.746 | 0.0 |
| >gi|357478577|ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|355510629|gb|AES91771.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2368 bits (6136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1356/2412 (56%), Positives = 1614/2412 (66%), Gaps = 285/2412 (11%)
Query: 1 MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60
MA+P NVELEAAKFLHKLIQDSKDEP KLATKLYVILQHMKSSGKEHSMPYQVISRAMET
Sbjct: 18 MASPQNVELEAAKFLHKLIQDSKDEPVKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 77
Query: 61 VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIE 120
VINQ+GLD+EALKSSRLPLT QIG SSSQ G KDS+ LAE+E K+E
Sbjct: 78 VINQHGLDIEALKSSRLPLTGVPQIG---------SSSQAVGGAKDSRPSLAESEAPKME 128
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER--------- 171
PFTS RPP+AP+G DYYQ S RS+QSFD ESPSSLD+RSANS SQ++
Sbjct: 129 PFTSGRPPIAPTGGAPDYYQGSVAQRSNQSFDQESPSSLDSRSANSLSQDKRDTVIWDKQ 188
Query: 172 --QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGA 229
QKDGKK +TKRKRGDS+ E ++ ++ RN+ VN RKGKM K + G K
Sbjct: 189 ANQKDGKKGNTKRKRGDSTSPVEMHVDSSSLVEPRNTGVNTRKGKMTKTEPSDGIPAKSG 248
Query: 230 EQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFP 289
E +NF++VP+ QME+ S+ SGNM ++LR EG ++ K DS N+ N RA NSK+P
Sbjct: 249 EMTNFSVVPNNSQMENISTFSGNMKTMLRANPEGHHLLAKQTDSTNIGNPTGRAPNSKYP 308
Query: 290 EEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPT 349
E++EV SSA+ PG QQ
Sbjct: 309 EDLEV-----------SSAHIA------------------------PGK-------QQ-- 324
Query: 350 VSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLE 409
A+ +VHG M + + +S + +FS++ + G L
Sbjct: 325 ------GAYARVHGGMVV-----------PANVSAMNEPVFSSS--------MQYGVPLN 359
Query: 410 HDG-SSNTLSDANRAVQVGRQNSVPGTAMLRT-MASRDTGKSSVSQTPVFSGMPFKEQQL 467
DG SSNTL+D ++ Q+GRQNS MLR + RDTGKS V S MPFKE QL
Sbjct: 360 RDGGSSNTLADGHQISQIGRQNSGSEMTMLRQGVPPRDTGKSPVPAAS--STMPFKENQL 417
Query: 468 KQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTM-KVQSSNDPS 526
KQLRAQCLVFLAFRNGL PKKLHLE+A G F RE DGS ++ D K QS ++P
Sbjct: 418 KQLRAQCLVFLAFRNGLPPKKLHLEVAFGTFFARE----DGSNKDSNDPKGKSQSFSEPG 473
Query: 527 SAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMM-DKSGPPADHSIH 585
+ PGV P+G N R TD+ P GSS+G FLEA+S K + +++ DK +D
Sbjct: 474 NMPGVIMPFGSSSNLRPTDK-NPSGSSAGKFLEAESFMKGTDGTRLLEDKGNLHSDIQTP 532
Query: 586 AEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFI 645
+E+ K LA K + E + QE +Q+ + QQ +S+S+RG + + ++D +NG L
Sbjct: 533 SEDSKHLA-AKRDVERRIQERVAAQSSSATPYQQKDSSSSRGIVVGNSNLDDSDNGILTA 591
Query: 646 GRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHEL---VKDNDPTQFKSF 702
GRAN SV G N +WTG +E + P T QHEL ++N PT F+S
Sbjct: 592 GRANQPSVVGPN--------NWTGFAGPSEASKGPPQVSTSQHELPIERRENIPTHFQSV 643
Query: 703 GHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDG 762
+S S N ++ +HL+S+S+++ WKPV G DS+ + + + + +
Sbjct: 644 VNSRGSWNPNSVNHLTSYSLKEHWKPVPGIDSNHHGGVTTMNGNVL-------------- 689
Query: 763 SRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWIL 822
G +++ EQ DK L + P+ K+TMSE+WIMD QK++LLV+QNW+
Sbjct: 690 ------------GKNVSAEQGGNDK-LASADLPSKKFTMSERWIMDQQKKRLLVQQNWMQ 736
Query: 823 KQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPI 882
KQQK K+RM+TCF+KLKE+VSS EDISAKTKSVIELKKLQLL LQRRLR+DFLNDFFKP+
Sbjct: 737 KQQKAKERMTTCFHKLKENVSSCEDISAKTKSVIELKKLQLLDLQRRLRSDFLNDFFKPV 796
Query: 883 TTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFK 942
T++++ LKS+KK+RHGRR+KQLE++E KMKEERQKRIRERQKEFF+EIE HKE+LD+VFK
Sbjct: 797 TSELEHLKSFKKNRHGRRVKQLERYELKMKEERQKRIRERQKEFFTEIEVHKEKLDDVFK 856
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
IKRERW+GVN+YVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV
Sbjct: 857 IKRERWKGVNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVK 916
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
+LLK TEKYLQKLGSKLQEAK+ A ++DE + + +E E + +EDESDQAKHY+
Sbjct: 917 QLLKATEKYLQKLGSKLQEAKAAAERSGQDVDEGGSTNFLENSETTLVDEDESDQAKHYM 976
Query: 1063 ESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGK 1122
ESNEKYY MAHS+KES++EQP+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGK
Sbjct: 977 ESNEKYYKMAHSVKESIAEQPSILHGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGK 1036
Query: 1123 TVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLF 1182
TVQVI+LICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAP IHKIVY GPPEERRRLF
Sbjct: 1037 TVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPSIHKIVYAGPPEERRRLF 1096
Query: 1183 KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
KE+IVH KFNVLLTTYEYLMNKHDRPKLSK+ WHYIIIDEGHRIKNASCKLNADLKHYQS
Sbjct: 1097 KERIVHHKFNVLLTTYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYQS 1156
Query: 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302
SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES GDNSPDEALLSEE
Sbjct: 1157 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESAGDNSPDEALLSEE 1216
Query: 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 1362
ENLLIINRLHQVLRPFVLRRLKHKVEN+LP KIERL+RCEAS+YQKLLMKRVE+NLG+IG
Sbjct: 1217 ENLLIINRLHQVLRPFVLRRLKHKVENQLPSKIERLIRCEASSYQKLLMKRVEDNLGAIG 1276
Query: 1363 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 1422
SK RSVHNSVMELRNICNHPYLSQLH+EEVD IPKHYLPPI+RLCGKLEMLDR+LPKL
Sbjct: 1277 TSKARSVHNSVMELRNICNHPYLSQLHSEEVDHYIPKHYLPPIIRLCGKLEMLDRVLPKL 1336
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KATDHRVLFFSTMTRLLDVME+YLT KQYRYLRLDGHTSGGDRGALID FN+ DSP+FIF
Sbjct: 1337 KATDHRVLFFSTMTRLLDVMEEYLTSKQYRYLRLDGHTSGGDRGALIDLFNKPDSPYFIF 1396
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET------ 1536
LLSIRAGGVGVNLQAADTVI+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFET
Sbjct: 1397 LLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVSNGEM 1456
Query: 1537 ------------------------VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED
Sbjct: 1457 GFWNQEVKGGEVRDSRFSNSLGTVVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1516
Query: 1573 RREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIR 1632
RREYLESLLRECKKEEAAPVL+DDALND+LARSE+E+DVFE+VD+ R+E E+ATW+ L+
Sbjct: 1517 RREYLESLLRECKKEEAAPVLEDDALNDVLARSEAELDVFEAVDRNRKESELATWKNLVL 1576
Query: 1633 GLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIY-DAPKTGVSPNVGVKRKGEHLGALDTQ 1690
G DG + +PPLPSRLVTD+DLK EAMKIY D PK + N GVKRK LG DTQ
Sbjct: 1577 GHSADGSDVIPPLPSRLVTDEDLKQFNEAMKIYDDVPKGEIDSN-GVKRKRGALGGPDTQ 1635
Query: 1691 HYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPT-----VVSSSAP 1745
HYGRGKRAREVRSYEEQWTEEEFEKMCQ E+ DSPK+K G E S PT VVS++
Sbjct: 1636 HYGRGKRAREVRSYEEQWTEEEFEKMCQTETPDSPKVK--GSEVSHPTNTTGSVVSATVK 1693
Query: 1746 AVYSTEPPAPLLPPPP----------PSLDPPQLQQSKEVTPPSKRGRGRPRR--ADKSP 1793
+ P AP+LPP PS++ +Q KE+TPP+KRGRGRP+R +DKSP
Sbjct: 1694 KPAAVPPVAPMLPPVAPILPSVVPILPSVESLPVQHVKEITPPAKRGRGRPKRIASDKSP 1753
Query: 1794 VPVVLPAPS--GTVKVEKDAMTGQSTSASASLPG-STTVSGVSGSAQHVMVGIAPSSQPT 1850
V+ P S V+++K G TS++ G S V+GV G Q G+ + P
Sbjct: 1754 AAVIPPVTSRIAEVQLQKGNEPGHLTSSAPDTVGHSAEVTGVGGPMQQSTTGVTANIPPA 1813
Query: 1851 TAFVPVAP-GSQSA-------------------------------SACPSTPMQPKGRGR 1878
T P P SQSA SA S P+ KGRGR
Sbjct: 1814 TPM-PTNPLNSQSAATPMPTNTGPVQQSNTEVAANVLSATPMLSQSAAASVPIHAKGRGR 1872
Query: 1879 RIQSGEQVPRRRGKKIGLVLPAASDDIP--SPGPDPKTNEQPQSESLNPSGGESTATDGN 1936
+ QSG + PRRRGKK ++ P +P S GPD K NEQ + + ++PSG ++
Sbjct: 1873 KTQSGREWPRRRGKKQVVMSPP----VPASSVGPDVKINEQLEDKIVSPSGQVIPQSE-- 1926
Query: 1937 VSSIPTA-----PVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPS--- 1988
++P+A P SVS S + +D LNS+L P +P PS
Sbjct: 1927 --TVPSATAVHHPTAVSVSASNCGNDNLGVD-----VVLNSQL-------PLLPLPSVTT 1972
Query: 1989 -----PQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSEN 2043
P SV MQ+KGQ K+Q G TPRRRGK+QA SPP+ V LQS +
Sbjct: 1973 LSPTVPSDPSVQMQSKGQIGKSQVGAGTPRRRGKKQATMSPPVPVVLG-------LQSMD 2025
Query: 2044 NSGGLRLSK-SVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQ 2102
+ L S +VS K+ LS L N +Q C + A K ++S + + Q
Sbjct: 2026 PTSNLPTSSDAVSGDKRTELSNLLENNVQESKCIIQDQASQNNQALKTLDESDDLAK--Q 2083
Query: 2103 PINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI-----PILALS 2157
+ P+ DS+ G +V + D+ + S K SE + SK V L+++
Sbjct: 2084 AVISPSCEDSTVNSQGQDLEKVKNADVHD--SSVKINSSETTPSKIAVCDNSENESLSVT 2141
Query: 2158 NMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHVPGAVAA 2217
+ E Q ++K A SK + +D T GS TE IS ++ V +
Sbjct: 2142 TLATTEVTKDQHSDDKIHQTAVASKISPSVVDPQTNSLAGSATTESISQSVDPVTAKIVP 2201
Query: 2218 RTPSISTSAPAASLSIPPQASVSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVF 2277
T + +P S S P + SV KR GRKT E PRRRGKK S P++P S
Sbjct: 2202 STLTTVYPSPPGSES-NPSSYESVSAKRQGRKTQNRLEPPRRRGKK--SAPALPVASDAL 2258
Query: 2278 ---DAKLNQHSQ 2286
D KL+ H+Q
Sbjct: 2259 IGQDPKLSHHAQ 2270
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478579|ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|355510630|gb|AES91772.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2368 bits (6136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1356/2412 (56%), Positives = 1614/2412 (66%), Gaps = 285/2412 (11%)
Query: 1 MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60
MA+P NVELEAAKFLHKLIQDSKDEP KLATKLYVILQHMKSSGKEHSMPYQVISRAMET
Sbjct: 18 MASPQNVELEAAKFLHKLIQDSKDEPVKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 77
Query: 61 VINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIE 120
VINQ+GLD+EALKSSRLPLT QIG SSSQ G KDS+ LAE+E K+E
Sbjct: 78 VINQHGLDIEALKSSRLPLTGVPQIG---------SSSQAVGGAKDSRPSLAESEAPKME 128
Query: 121 PFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER--------- 171
PFTS RPP+AP+G DYYQ S RS+QSFD ESPSSLD+RSANS SQ++
Sbjct: 129 PFTSGRPPIAPTGGAPDYYQGSVAQRSNQSFDQESPSSLDSRSANSLSQDKRDTVIWDKQ 188
Query: 172 --QKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGA 229
QKDGKK +TKRKRGDS+ E ++ ++ RN+ VN RKGKM K + G K
Sbjct: 189 ANQKDGKKGNTKRKRGDSTSPVEMHVDSSSLVEPRNTGVNTRKGKMTKTEPSDGIPAKSG 248
Query: 230 EQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFP 289
E +NF++VP+ QME+ S+ SGNM ++LR EG ++ K DS N+ N RA NSK+P
Sbjct: 249 EMTNFSVVPNNSQMENISTFSGNMKTMLRANPEGHHLLAKQTDSTNIGNPTGRAPNSKYP 308
Query: 290 EEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPT 349
E++EV SSA+ PG QQ
Sbjct: 309 EDLEV-----------SSAHIA------------------------PGK-------QQ-- 324
Query: 350 VSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLE 409
A+ +VHG M + + +S + +FS++ + G L
Sbjct: 325 ------GAYARVHGGMVV-----------PANVSAMNEPVFSSS--------MQYGVPLN 359
Query: 410 HDG-SSNTLSDANRAVQVGRQNSVPGTAMLRT-MASRDTGKSSVSQTPVFSGMPFKEQQL 467
DG SSNTL+D ++ Q+GRQNS MLR + RDTGKS V S MPFKE QL
Sbjct: 360 RDGGSSNTLADGHQISQIGRQNSGSEMTMLRQGVPPRDTGKSPVPAAS--STMPFKENQL 417
Query: 468 KQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTM-KVQSSNDPS 526
KQLRAQCLVFLAFRNGL PKKLHLE+A G F RE DGS ++ D K QS ++P
Sbjct: 418 KQLRAQCLVFLAFRNGLPPKKLHLEVAFGTFFARE----DGSNKDSNDPKGKSQSFSEPG 473
Query: 527 SAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMM-DKSGPPADHSIH 585
+ PGV P+G N R TD+ P GSS+G FLEA+S K + +++ DK +D
Sbjct: 474 NMPGVIMPFGSSSNLRPTDK-NPSGSSAGKFLEAESFMKGTDGTRLLEDKGNLHSDIQTP 532
Query: 586 AEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFI 645
+E+ K LA K + E + QE +Q+ + QQ +S+S+RG + + ++D +NG L
Sbjct: 533 SEDSKHLA-AKRDVERRIQERVAAQSSSATPYQQKDSSSSRGIVVGNSNLDDSDNGILTA 591
Query: 646 GRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHEL---VKDNDPTQFKSF 702
GRAN SV G N +WTG +E + P T QHEL ++N PT F+S
Sbjct: 592 GRANQPSVVGPN--------NWTGFAGPSEASKGPPQVSTSQHELPIERRENIPTHFQSV 643
Query: 703 GHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDG 762
+S S N ++ +HL+S+S+++ WKPV G DS+ + + + + +
Sbjct: 644 VNSRGSWNPNSVNHLTSYSLKEHWKPVPGIDSNHHGGVTTMNGNVL-------------- 689
Query: 763 SRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWIL 822
G +++ EQ DK L + P+ K+TMSE+WIMD QK++LLV+QNW+
Sbjct: 690 ------------GKNVSAEQGGNDK-LASADLPSKKFTMSERWIMDQQKKRLLVQQNWMQ 736
Query: 823 KQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPI 882
KQQK K+RM+TCF+KLKE+VSS EDISAKTKSVIELKKLQLL LQRRLR+DFLNDFFKP+
Sbjct: 737 KQQKAKERMTTCFHKLKENVSSCEDISAKTKSVIELKKLQLLDLQRRLRSDFLNDFFKPV 796
Query: 883 TTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFK 942
T++++ LKS+KK+RHGRR+KQLE++E KMKEERQKRIRERQKEFF+EIE HKE+LD+VFK
Sbjct: 797 TSELEHLKSFKKNRHGRRVKQLERYELKMKEERQKRIRERQKEFFTEIEVHKEKLDDVFK 856
Query: 943 IKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVN 1002
IKRERW+GVN+YVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV
Sbjct: 857 IKRERWKGVNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVK 916
Query: 1003 KLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
+LLK TEKYLQKLGSKLQEAK+ A ++DE + + +E E + +EDESDQAKHY+
Sbjct: 917 QLLKATEKYLQKLGSKLQEAKAAAERSGQDVDEGGSTNFLENSETTLVDEDESDQAKHYM 976
Query: 1063 ESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGK 1122
ESNEKYY MAHS+KES++EQP+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGK
Sbjct: 977 ESNEKYYKMAHSVKESIAEQPSILHGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGK 1036
Query: 1123 TVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLF 1182
TVQVI+LICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAP IHKIVY GPPEERRRLF
Sbjct: 1037 TVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPSIHKIVYAGPPEERRRLF 1096
Query: 1183 KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
KE+IVH KFNVLLTTYEYLMNKHDRPKLSK+ WHYIIIDEGHRIKNASCKLNADLKHYQS
Sbjct: 1097 KERIVHHKFNVLLTTYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYQS 1156
Query: 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302
SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES GDNSPDEALLSEE
Sbjct: 1157 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESAGDNSPDEALLSEE 1216
Query: 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 1362
ENLLIINRLHQVLRPFVLRRLKHKVEN+LP KIERL+RCEAS+YQKLLMKRVE+NLG+IG
Sbjct: 1217 ENLLIINRLHQVLRPFVLRRLKHKVENQLPSKIERLIRCEASSYQKLLMKRVEDNLGAIG 1276
Query: 1363 NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 1422
SK RSVHNSVMELRNICNHPYLSQLH+EEVD IPKHYLPPI+RLCGKLEMLDR+LPKL
Sbjct: 1277 TSKARSVHNSVMELRNICNHPYLSQLHSEEVDHYIPKHYLPPIIRLCGKLEMLDRVLPKL 1336
Query: 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482
KATDHRVLFFSTMTRLLDVME+YLT KQYRYLRLDGHTSGGDRGALID FN+ DSP+FIF
Sbjct: 1337 KATDHRVLFFSTMTRLLDVMEEYLTSKQYRYLRLDGHTSGGDRGALIDLFNKPDSPYFIF 1396
Query: 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET------ 1536
LLSIRAGGVGVNLQAADTVI+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFET
Sbjct: 1397 LLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVSNGEM 1456
Query: 1537 ------------------------VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1572
VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED
Sbjct: 1457 GFWNQEVKGGEVRDSRFSNSLGTVVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAED 1516
Query: 1573 RREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIR 1632
RREYLESLLRECKKEEAAPVL+DDALND+LARSE+E+DVFE+VD+ R+E E+ATW+ L+
Sbjct: 1517 RREYLESLLRECKKEEAAPVLEDDALNDVLARSEAELDVFEAVDRNRKESELATWKNLVL 1576
Query: 1633 GLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIY-DAPKTGVSPNVGVKRKGEHLGALDTQ 1690
G DG + +PPLPSRLVTD+DLK EAMKIY D PK + N GVKRK LG DTQ
Sbjct: 1577 GHSADGSDVIPPLPSRLVTDEDLKQFNEAMKIYDDVPKGEIDSN-GVKRKRGALGGPDTQ 1635
Query: 1691 HYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPT-----VVSSSAP 1745
HYGRGKRAREVRSYEEQWTEEEFEKMCQ E+ DSPK+K G E S PT VVS++
Sbjct: 1636 HYGRGKRAREVRSYEEQWTEEEFEKMCQTETPDSPKVK--GSEVSHPTNTTGSVVSATVK 1693
Query: 1746 AVYSTEPPAPLLPPPP----------PSLDPPQLQQSKEVTPPSKRGRGRPRR--ADKSP 1793
+ P AP+LPP PS++ +Q KE+TPP+KRGRGRP+R +DKSP
Sbjct: 1694 KPAAVPPVAPMLPPVAPILPSVVPILPSVESLPVQHVKEITPPAKRGRGRPKRIASDKSP 1753
Query: 1794 VPVVLPAPS--GTVKVEKDAMTGQSTSASASLPG-STTVSGVSGSAQHVMVGIAPSSQPT 1850
V+ P S V+++K G TS++ G S V+GV G Q G+ + P
Sbjct: 1754 AAVIPPVTSRIAEVQLQKGNEPGHLTSSAPDTVGHSAEVTGVGGPMQQSTTGVTANIPPA 1813
Query: 1851 TAFVPVAP-GSQSA-------------------------------SACPSTPMQPKGRGR 1878
T P P SQSA SA S P+ KGRGR
Sbjct: 1814 TPM-PTNPLNSQSAATPMPTNTGPVQQSNTEVAANVLSATPMLSQSAAASVPIHAKGRGR 1872
Query: 1879 RIQSGEQVPRRRGKKIGLVLPAASDDIP--SPGPDPKTNEQPQSESLNPSGGESTATDGN 1936
+ QSG + PRRRGKK ++ P +P S GPD K NEQ + + ++PSG ++
Sbjct: 1873 KTQSGREWPRRRGKKQVVMSPP----VPASSVGPDVKINEQLEDKIVSPSGQVIPQSE-- 1926
Query: 1937 VSSIPTA-----PVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPS--- 1988
++P+A P SVS S + +D LNS+L P +P PS
Sbjct: 1927 --TVPSATAVHHPTAVSVSASNCGNDNLGVD-----VVLNSQL-------PLLPLPSVTT 1972
Query: 1989 -----PQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSEN 2043
P SV MQ+KGQ K+Q G TPRRRGK+QA SPP+ V LQS +
Sbjct: 1973 LSPTVPSDPSVQMQSKGQIGKSQVGAGTPRRRGKKQATMSPPVPVVLG-------LQSMD 2025
Query: 2044 NSGGLRLSK-SVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQ 2102
+ L S +VS K+ LS L N +Q C + A K ++S + + Q
Sbjct: 2026 PTSNLPTSSDAVSGDKRTELSNLLENNVQESKCIIQDQASQNNQALKTLDESDDLAK--Q 2083
Query: 2103 PINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKGGVI-----PILALS 2157
+ P+ DS+ G +V + D+ + S K SE + SK V L+++
Sbjct: 2084 AVISPSCEDSTVNSQGQDLEKVKNADVHD--SSVKINSSETTPSKIAVCDNSENESLSVT 2141
Query: 2158 NMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHVPGAVAA 2217
+ E Q ++K A SK + +D T GS TE IS ++ V +
Sbjct: 2142 TLATTEVTKDQHSDDKIHQTAVASKISPSVVDPQTNSLAGSATTESISQSVDPVTAKIVP 2201
Query: 2218 RTPSISTSAPAASLSIPPQASVSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSAVF 2277
T + +P S S P + SV KR GRKT E PRRRGKK S P++P S
Sbjct: 2202 STLTTVYPSPPGSES-NPSSYESVSAKRQGRKTQNRLEPPRRRGKK--SAPALPVASDAL 2258
Query: 2278 ---DAKLNQHSQ 2286
D KL+ H+Q
Sbjct: 2259 IGQDPKLSHHAQ 2270
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100259|ref|XP_002311805.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222851625|gb|EEE89172.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2367 bits (6135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1240/1796 (69%), Positives = 1386/1796 (77%), Gaps = 168/1796 (9%)
Query: 58 METVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMS 117
METVINQ+GLD+EAL+SSRLPLTSG+Q+GDSSTAQ GSS Q GV KDSKAG AENE+S
Sbjct: 1 METVINQHGLDIEALRSSRLPLTSGTQMGDSSTAQYGGSS-QAVGVGKDSKAGSAENEIS 59
Query: 118 KIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER---QKD 174
KI+ F SSRPPV P AGHDYYQ SGT RSSQSFDHESPSSLDTRSANSQSQER QKD
Sbjct: 60 KIDTFASSRPPVGPGTAGHDYYQGSGTQRSSQSFDHESPSSLDTRSANSQSQERGVNQKD 119
Query: 175 GKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNF 234
GKKA+ KRKR DSS+ E +NPQQL+ RN++VNPR+GKMNKVD+PGG+ V+G E ++F
Sbjct: 120 GKKAAAKRKRVDSSLHSEMHGDNPQQLNPRNTIVNPRRGKMNKVDSPGGYPVRGGENTSF 179
Query: 235 NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
N VP+ GQ+E SS V
Sbjct: 180 NKVPNSGQLEVSSSF--------------------------------------------V 195
Query: 295 SASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRF-----PGNMMIETPMQQPT 349
SA GQQQG SL SA+ L SRG WNQN+AG P ERS +PRF GN E +QQ
Sbjct: 196 SA-GQQQGGSLPSAHESLTSRGMWNQNKAGLPLERSHIPRFSSNAVSGNTTAEIQLQQSA 254
Query: 350 VSSLGANAFGKVHGAMPI--------------GPSSYPT----------GELGSSALSPV 385
+SSLG++AF KVHG MP+ GP Y + G + SSA
Sbjct: 255 ISSLGSSAFSKVHGGMPVTSNPTGPMGELGFAGPVQYSSSEHQKHGLTKGAVASSAEKTS 314
Query: 386 ESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRD 445
E F+ NR D+ LS+GK+LE+ GSSN ++A++ VQ GRQ S M+R+ + RD
Sbjct: 315 EGHFFAANRVDDFPTSLSTGKILENGGSSNMFAEASKIVQGGRQTSNSELTMIRSTSPRD 374
Query: 446 TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGN 505
GKS V Q SGMPF EQQL+QLRAQCLVFLAFRN L+PKKLHL+IALGN ++GG
Sbjct: 375 VGKSPVFQGSALSGMPFNEQQLRQLRAQCLVFLAFRNDLMPKKLHLDIALGNAVSKDGGT 434
Query: 506 VDGSRRELVDTM-KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSS 564
+DG R+EL+D K QSSN+ +S P V GRL NA+E+D++ PG S F++ +
Sbjct: 435 LDGPRKELIDYKGKAQSSNESTSIPEVLMSCGRLNNAKESDKVLPG--SGARFVDGNYVP 492
Query: 565 KEVENLKMMDKSGPPADHSIHAEERKQ-LATGKLEAEMQSQETAESQAFFTSASQQLESA 623
KE + LKM++ PP+D I A+ERK L+T K +AEMQSQE ESQ FF SA QQ +SA
Sbjct: 493 KEADTLKMVED--PPSDPLILADERKYLLSTRKPDAEMQSQEAVESQGFFPSAMQQPDSA 550
Query: 624 STRGTLAITNPVNDVENGHLFIGRANVASVTG-INKPMNSEINSWTGIGSQNEVPRRPLP 682
RG L ++NPV+ ++N L +G+ + AS T +NK N E SWTGIG+Q+ LP
Sbjct: 551 --RGGLLLSNPVDGMDNTCLHVGKTDHASSTSFVNKQANLEAVSWTGIGNQS------LP 602
Query: 683 APTVQHELV---KDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSL 739
+VQ LV KDN +QF S G+S ASGN+ + S+ ++W P SG D+D ++
Sbjct: 603 FRSVQLGLVPDRKDNASSQFHSLGNSIASGNKSGYNGFYCISLNERWDPRSGVDNDHPTV 662
Query: 740 IPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKY 799
+KDA R + DG + +PVD S+RNGIS TTEQD+EDKS TDS P+PKY
Sbjct: 663 ALMKDADDDSRLSEFQTRYAPDGYKVVPVDVSLRNGISFTTEQDDEDKSASTDSQPSPKY 722
Query: 800 TMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELK 859
TMSEKWIMD Q++KLL EQNW+LKQQ+TKQR+STCF KLKE+VS S+DISAKTKSVIELK
Sbjct: 723 TMSEKWIMDHQRKKLLTEQNWVLKQQRTKQRISTCFYKLKETVSFSKDISAKTKSVIELK 782
Query: 860 KLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRI 919
KLQLL LQRRLR+DFLNDFFKPIT DMDRLKS KKH+HGRRI+QLEK+EQKMKEERQKRI
Sbjct: 783 KLQLLELQRRLRSDFLNDFFKPITNDMDRLKSCKKHKHGRRIRQLEKYEQKMKEERQKRI 842
Query: 920 RERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKIN 979
RERQKEFF EIE HKERLD+VFKIKRERW+G NKYVKEFHKRKERIHREKIDRIQREKIN
Sbjct: 843 RERQKEFFDEIEVHKERLDDVFKIKRERWKGFNKYVKEFHKRKERIHREKIDRIQREKIN 902
Query: 980 LLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTV 1039
LLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQEAKSMAS FEN+MDE++T
Sbjct: 903 LLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMASRFENDMDESRTA 962
Query: 1040 SVVEKYEPAVENEDESDQAK------------------HYLESNEKYYLMAHSIKESVSE 1081
+VVEK E A ENEDESDQAK HY+ESNEKYYLMAHS+KES++E
Sbjct: 963 TVVEKNETAAENEDESDQAKAGCLAFSGFFCFFWGPFYHYMESNEKYYLMAHSVKESIAE 1022
Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
QPTCLQGGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRG
Sbjct: 1023 QPTCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRG 1082
Query: 1142 PFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
PFLVVVPSSVLPGWE+EINFWAP I +I+Y GPPEERRRLFKEKIVHQKFNVLLTTYEYL
Sbjct: 1083 PFLVVVPSSVLPGWETEINFWAPGILRIIYSGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1142
Query: 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELW 1261
MNKHDRPKLSKI WHYIIIDEGHRIKNASCKLNA+LKHYQSSHRLLLTGTPLQNNLEELW
Sbjct: 1143 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAELKHYQSSHRLLLTGTPLQNNLEELW 1202
Query: 1262 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321
ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNS DEALLSEEENLLIINRLHQVLRPFVLR
Sbjct: 1203 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSADEALLSEEENLLIINRLHQVLRPFVLR 1262
Query: 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICN 1381
RLKHKVENELPEKIERLVRCEASAYQKLLMKRVE+NLGSIGN K RSVHNSVMELRNICN
Sbjct: 1263 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEDNLGSIGNPKARSVHNSVMELRNICN 1322
Query: 1382 HPYLSQLHAEE-----VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT 1436
HPYLSQLHA+E VDTLIPKH+LPPI+RLCGKLEMLDRLLPKLKATDHRVLFFSTMT
Sbjct: 1323 HPYLSQLHADEACSSLVDTLIPKHFLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMT 1382
Query: 1437 RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL------------ 1484
RLLDVME+YLT+KQYRYLRLDGHTSGGDRG+LID FNQQDSP+FIFLL
Sbjct: 1383 RLLDVMEEYLTWKQYRYLRLDGHTSGGDRGSLIDSFNQQDSPYFIFLLRSFILTNQIFPS 1442
Query: 1485 ----------------------------SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 1516
SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA
Sbjct: 1443 LCFCPGDSLSCMLGVLDALFGVYQGVVVSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 1502
Query: 1517 QARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 1576
QARAHRIGQKR+ VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY
Sbjct: 1503 QARAHRIGQKRE--------VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 1554
Query: 1577 LESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGT 1636
LESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQR+ +EMATW+ L+ G G
Sbjct: 1555 LESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRQAKEMATWKNLLLGQGM 1614
Query: 1637 DG-EPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRG 1695
D E PPLPSRLVTDDDLKA Y+AM +YD PK GV N GVKRKG+ LG LDTQHYGRG
Sbjct: 1615 DALEHQPPLPSRLVTDDDLKAFYKAMNLYDVPKAGVESNAGVKRKGQSLGGLDTQHYGRG 1674
Query: 1696 KRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE 1751
KRAREVRSYEEQWTEEEFEKMC+AES DSP KEE E++L S S A+ S+E
Sbjct: 1675 KRAREVRSYEEQWTEEEFEKMCEAESPDSPMRKEETGERNLLKDASGSLLAIGSSE 1730
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433367|ref|XP_004134469.1| PREDICTED: uncharacterized protein LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2059 bits (5334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1732 (65%), Positives = 1310/1732 (75%), Gaps = 105/1732 (6%)
Query: 384 PVESQLFSTNRGDETSAMLSSGKVLEHD--GSSNTLSDANRAVQVGRQNSVPGTAMLRTM 441
P++ QL+S NRGD TS S+ KVLE + S + DA + +Q +N+ P +MLR
Sbjct: 255 PIDPQLYSVNRGDGTST--SNEKVLESELPMPSTSSVDATKMIQGTWRNNGPEMSMLRNS 312
Query: 442 ASRDTGKSSVSQ--TPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIF 499
SR+ GK VSQ TP S +PFKEQQLKQLRAQCLVFLAFRNGL+PKKLHLEIALGN F
Sbjct: 313 VSREAGKLPVSQVPTPSQSRLPFKEQQLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNNF 372
Query: 500 PREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLE 559
P+E +G R+++ QS N+ S+ P G+L RET + PG S+G E
Sbjct: 373 PKE----EGLRKDVDPRGISQSFNEARSSNEGMMPSGKLDAGRETGMVAPGAVSAGRTFE 428
Query: 560 ADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQ 619
ADS K+++N ++ +K +D+S+ AE RK A G M+ + TA Q +S S
Sbjct: 429 ADSM-KDIDNRRVEEKKVTSSDYSVQAEVRKAEAEG-----MREKTTA--QTCLSSGSHP 480
Query: 620 LESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRR 679
+ + TRG L NPV D+EN +L + GI+KP+N E WTGIGS NE+ R
Sbjct: 481 PDFSGTRGVLTANNPVEDLENSNL-----QATAAAGISKPLNPETVGWTGIGSTNEISRV 535
Query: 680 PLPAPTVQHELVKD--NDPT-QFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDR 736
LPA QHELV D ND + Q ++ G+QH +S SSFS+ ++WKP+SGT
Sbjct: 536 SLPAFASQHELVVDRKNDVSAQLHIVRNNSGLGSQHIDSQ-SSFSMGERWKPISGTYDQY 594
Query: 737 YSLIPVKDASGMLRHTSQDDPKFSDG-SRTIPVDNSV------RNGISLTTEQDEEDKSL 789
++++P +DAS + S DD + SR I V +NG T EQ++ KS+
Sbjct: 595 HAVMPSRDASVIPNIASHDDMHVPESESRCITEVQKVASIDEGKNGSLNTMEQEDNGKSM 654
Query: 790 HTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDIS 849
+D P +PK TMSEKWIMD QK+KLL EQNW+LKQQKT++R+ TCF+KLKE+VSSSEDIS
Sbjct: 655 PSDLPMSPKNTMSEKWIMDRQKKKLLNEQNWLLKQQKTEKRIITCFDKLKETVSSSEDIS 714
Query: 850 AKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQ 909
AKT+SVIELKKLQLL LQRRLRNDFLNDFFKPI+T+MDRLKS+KKH+HGRRIKQLEKFEQ
Sbjct: 715 AKTRSVIELKKLQLLQLQRRLRNDFLNDFFKPISTEMDRLKSFKKHKHGRRIKQLEKFEQ 774
Query: 910 KMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREK 969
+MKEERQKRIRERQKEFF EIE HKERLD+VFK+KRERW+G NKYVKEFHKRKERIHREK
Sbjct: 775 RMKEERQKRIRERQKEFFGEIEVHKERLDDVFKVKRERWKGFNKYVKEFHKRKERIHREK 834
Query: 970 IDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHF 1029
IDRIQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQEAKSMAS
Sbjct: 835 IDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMAS-- 892
Query: 1030 ENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGG 1089
+MD+ V+V EK E A+ENEDE AKHYLESNEKYY+MAHS+KES++EQP+CLQGG
Sbjct: 893 --DMDDGGAVNVAEKSEAAIENEDE---AKHYLESNEKYYMMAHSVKESIAEQPSCLQGG 947
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149
KLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGPFLVVVPS
Sbjct: 948 KLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPS 1007
Query: 1150 SVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK 1209
SVLPGWESEINFWAP + KIVY GPPEERR+LFKE+IVHQKFNVLLTTYEYLMNKHDRPK
Sbjct: 1008 SVLPGWESEINFWAPSVLKIVYSGPPEERRKLFKERIVHQKFNVLLTTYEYLMNKHDRPK 1067
Query: 1210 LSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 1269
LSKI WHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP
Sbjct: 1068 LSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 1127
Query: 1270 NIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN 1329
NIFNSSEDFSQWFNKPFESNGDNS D+ALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN
Sbjct: 1128 NIFNSSEDFSQWFNKPFESNGDNSADQALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN 1187
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH 1389
ELPEKIERLVRCEASAYQKLLM+RVE+NLGSIG++K RSVHNSVMELRNICNHPYLSQLH
Sbjct: 1188 ELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPYLSQLH 1247
Query: 1390 AEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK 1449
AEEVD LIPKHYLPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVME+YL +K
Sbjct: 1248 AEEVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLQWK 1307
Query: 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWN 1509
QYRYLRLDGHTSGGDRGALI+ FN+Q+SP+FIFLLSIRAGGVGVNLQAADTVIIFDTDWN
Sbjct: 1308 QYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWN 1367
Query: 1510 PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTS 1569
PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA+AEHKLGVANQSITAGFFDNNTS
Sbjct: 1368 PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFFDNNTS 1427
Query: 1570 AEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRK 1629
AEDRREYLESLLRECKKEEA+PVLDDDALNDLLARSESEIDVFE+VDK+R+E EMATW+K
Sbjct: 1428 AEDRREYLESLLRECKKEEASPVLDDDALNDLLARSESEIDVFETVDKERQEHEMATWKK 1487
Query: 1630 LIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY-DAPKTGVSPNVGVKRKGEHLGALD 1688
L+ G G EP+P +PSRLVTDDDLK YE MKI + PK G + + GVKRK E+LG+LD
Sbjct: 1488 LVLGHGI-SEPVPSIPSRLVTDDDLKVFYETMKITEEVPKAGEASHAGVKRKSEYLGSLD 1546
Query: 1689 TQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVY 1748
TQHYGRGKRAREVRSYEEQWTEEEFEKMC+ +S +SP+ KE + +V S AV
Sbjct: 1547 TQHYGRGKRAREVRSYEEQWTEEEFEKMCKVDSPESPRSKEAVAGEPSASVSGSVEAAVL 1606
Query: 1749 STEPPA--PLLPPPPPS----LDP-----PQLQQSKEVTPPSKRGRGRPRRA--DKSPVP 1795
TE PA PL P P + L P P + TPPSKRGRGRP+R+ DK P P
Sbjct: 1607 KTEEPASSPLAPAQPLAPVQPLAPVQPLAPVQPMPQHQTPPSKRGRGRPKRSTVDKLPAP 1666
Query: 1796 VV-LPAPSGTVKVEKDAMTGQSTSASA------SLPGSTTVSGVSGSAQHVMVGIAPSSQ 1848
VV LP+ S T K E + G++ S+ + SLPG G++G + G AP+S
Sbjct: 1667 VVPLPSLSITAKTET-GLQGETISSISKTGCLDSLPG----QGITG---QIASGAAPNSL 1718
Query: 1849 PTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIP-S 1907
TT + P S+SA AC P+Q KG GR+ Q+G++ PRRRGKK G+V P +P S
Sbjct: 1719 LTTPVPSIIPASESAPACSPAPIQAKGHGRKTQTGQEAPRRRGKKQGIVPPP----VPCS 1774
Query: 1908 PGPDPKTNEQPQSESLNPSGGESTATDGNVS-------------SIPTAPVPDSVSPSAV 1954
D + ++ + NP G+ VS S P+ PV A+
Sbjct: 1775 QSSDLRQDDLSPGKLTNPVAGQVNVASEVVSNASATQPPTSFPGSTPSKPVTGPNDQPAI 1834
Query: 1955 KGQSGTIDPSSAVAALN--SELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTP 2012
G S ++PS+A+ +++ S++ NL +P+P +Q +G RKTQS P
Sbjct: 1835 -GVSSNLEPSAAMPSVSSTSQIAPNL-----IPKP--------VQPRGPYRKTQSAAGAP 1880
Query: 2013 RRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQ 2064
RRRGK+QA +P + + A SN+ + N SK+V K++ ++Q
Sbjct: 1881 RRRGKKQAGPTPALPNTMAAASLSSNMNLQKNHMDSSSSKAVVSPKENIVNQ 1932
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736923|emb|CBI26124.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2043 bits (5294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1043/1387 (75%), Positives = 1173/1387 (84%), Gaps = 33/1387 (2%)
Query: 385 VESQLFSTNRGDETSAMLSSGKVLEHDG-SSNTLSDANRAVQVGRQNSVPGTAMLRTMAS 443
+E+Q+ S N G+E S LS GKVL+H+G +SNT +AN+ Q G N V +MLR+
Sbjct: 329 IEAQMLSGNHGEEESKTLSIGKVLDHEGGTSNTSGNANKMAQGGGANMVTEMSMLRSATF 388
Query: 444 RDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
RD GKS + Q FSGMPFKEQ LKQLRAQCLVFLA RN L+PKKLHLEIALGNI+P+EG
Sbjct: 389 RDAGKSPIPQALPFSGMPFKEQHLKQLRAQCLVFLAIRNNLMPKKLHLEIALGNIYPKEG 448
Query: 504 GNVDGSRRELVDTM-KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADS 562
G DG R+EL+D K S N+PS+ P V P+GRL N R+T+RIPPG SSSG LE DS
Sbjct: 449 GITDGPRKELIDHKGKDYSLNEPSNVPEVPVPFGRLSNVRDTERIPPGSSSSGSLLETDS 508
Query: 563 SSKEVENLKMMDKSGPPADHSIHAEERKQLAT--GKLEAEMQSQETAESQAFFTSASQQL 620
SK EN K+M+ + + AEER+ + K EA+M +QE AESQAF ++ASQ
Sbjct: 509 MSKAGENTKIMED-----NLTGIAEERRHILAMRRKPEADMHTQEVAESQAFPSTASQP- 562
Query: 621 ESASTRGTLAITNPVNDVENGHLFIGRANVAS-VTGINKPMNSEINSWTGIGSQNEVPRR 679
+S+S G A + N +E+ HL +GRAN AS + GIN+ + E+ +WTGIG+ N+ R
Sbjct: 563 DSSSIMGLTASPHEDN-LESSHLQVGRANQASSLMGINRQIQPELINWTGIGNHNDASRG 621
Query: 680 PLPAPTVQHELV---KDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDR 736
LP +QHE + KDN P+Q +SFG + GNQH+ +HLS F +RD WKPVSG D+D
Sbjct: 622 QLPVSAIQHEPLLERKDNTPSQSQSFGDTSVQGNQHSENHLSPFLLRDHWKPVSGMDNDH 681
Query: 737 YSLIPVKDASGMLRHTSQDDPK--------FSDGSRTIPVDNSVRNG-----ISLTTEQD 783
+ + K+A+ +++H S+DD K SDG + + +D++ +NG + + EQ
Sbjct: 682 HKIFQTKEANLLIKHVSRDDSKVTEIQTRCISDGCKAVAIDDTTKNGYPYKMVEKSAEQG 741
Query: 784 EEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVS 843
+ED+ + + PP+PK T SEKWIMD QKR+L VEQNW+LK+QKT+++++ CF KLK +VS
Sbjct: 742 DEDRPMLVNLPPSPKCTTSEKWIMDQQKRRLHVEQNWLLKEQKTEKKIAACFEKLKGTVS 801
Query: 844 SSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQ 903
SSEDISAKTKSVIELKKLQLL LQRRLR DFLNDFFKPI ++DRLKS+KKHRHGRRIKQ
Sbjct: 802 SSEDISAKTKSVIELKKLQLLALQRRLRRDFLNDFFKPIAIELDRLKSFKKHRHGRRIKQ 861
Query: 904 LEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKE 963
LEKFEQKMKEERQKRIRERQKEFFSEIE HKERLD+VFK KRERW+ +KYVKEFHKRKE
Sbjct: 862 LEKFEQKMKEERQKRIRERQKEFFSEIEVHKERLDDVFKFKRERWKSFSKYVKEFHKRKE 921
Query: 964 RIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAK 1023
RIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQEAK
Sbjct: 922 RIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAK 981
Query: 1024 SMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
SM HFE +MDE +T +VVEK E AV+NEDESDQAKHYLESNEKYYLMAHSIKES++EQP
Sbjct: 982 SMTRHFEVDMDENRTANVVEKNETAVDNEDESDQAKHYLESNEKYYLMAHSIKESIAEQP 1041
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
TCLQGGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVIALICYLMETKNDRGPF
Sbjct: 1042 TCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1101
Query: 1144 LVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMN 1203
LVVVPSSVL GWESEINFWAP ++KIVY GPPEERR+LFKE+IVHQKFNVLLTTYEYLMN
Sbjct: 1102 LVVVPSSVLSGWESEINFWAPSVNKIVYSGPPEERRKLFKERIVHQKFNVLLTTYEYLMN 1161
Query: 1204 KHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWAL 1263
KHDRPKLSKI WHYI+IDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWAL
Sbjct: 1162 KHDRPKLSKIHWHYIVIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWAL 1221
Query: 1264 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323
LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL
Sbjct: 1222 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1281
Query: 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHP 1383
KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG++K RSVHNSVMELRNICNHP
Sbjct: 1282 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGSTKARSVHNSVMELRNICNHP 1341
Query: 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443
YLSQLHA+EVD LIPKH+LPP+VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME
Sbjct: 1342 YLSQLHADEVDNLIPKHFLPPVVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1401
Query: 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503
+YL +KQYRYLRLDGHTSGGDRGALI++FNQ DSP+FIFLLSIRAGGVGVNLQAADTVII
Sbjct: 1402 EYLHWKQYRYLRLDGHTSGGDRGALIEQFNQPDSPYFIFLLSIRAGGVGVNLQAADTVII 1461
Query: 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF 1563
FDTDWNPQVDLQAQARAHRIGQKRDVLVLR ETVQTVEEQVRASAEHKLGVANQSITAGF
Sbjct: 1462 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRLETVQTVEEQVRASAEHKLGVANQSITAGF 1521
Query: 1564 FDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEE 1623
FDNNTSAEDRREYLESLLRE KKEEA PVLDDDALNDLLARSESEID+FES+DK+R+E E
Sbjct: 1522 FDNNTSAEDRREYLESLLRESKKEEAMPVLDDDALNDLLARSESEIDIFESIDKKRQEAE 1581
Query: 1624 MATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEH 1683
MATW+KL+ G E PPLPSRLVTDDDLK Y+AMKIY+ GV NVGVKRKGE+
Sbjct: 1582 MATWKKLV---GQGMELAPPLPSRLVTDDDLKVFYQAMKIYEESNAGVISNVGVKRKGEY 1638
Query: 1684 LGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 1743
LG LDTQ YGRGKRAREVRSYEEQWTEEEFEK+CQ +S +SPKLKEE +E +LP + SS
Sbjct: 1639 LGGLDTQQYGRGKRAREVRSYEEQWTEEEFEKLCQVDSPESPKLKEEMVETNLP--IDSS 1696
Query: 1744 APAVYST 1750
P V ++
Sbjct: 1697 GPVVATS 1703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449495482|ref|XP_004159854.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2043 bits (5292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1169/1936 (60%), Positives = 1378/1936 (71%), Gaps = 157/1936 (8%)
Query: 384 PVESQLFSTNRGDETSAMLSSGKVLEHD--GSSNTLSDANRAVQVGRQNSVPGTAMLRTM 441
P++ QL+S NRGD TS S+ KVLE + S + DA + +Q +N+ P +MLR
Sbjct: 255 PIDPQLYSVNRGDGTST--SNEKVLESELPMPSTSSVDATKMIQGTWRNNGPEMSMLRNS 312
Query: 442 ASRDTGKSSVSQTPVF-------SGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIA 494
SR+ GK PV S +PFKEQQLKQLRAQCLVFLAFRNGL+PKKLHLEIA
Sbjct: 313 VSREAGK-----LPVLRFLPHPNSRLPFKEQQLKQLRAQCLVFLAFRNGLMPKKLHLEIA 367
Query: 495 LGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSS 554
LGN F ++G D R + QS N+ S+ P G+L RET + PG S+
Sbjct: 368 LGNNFLKKGLRKDVDPRGIS-----QSFNEARSSNEGMMPSGKLDAGRETGMVAPGAVSA 422
Query: 555 GGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFT 614
G EADS K+++N ++ +K +D+S+ AE RK A G M+ + TA Q +
Sbjct: 423 GRTFEADSM-KDIDNRRVEEKKVTSSDYSVQAEVRKAEAEG-----MREKTTA--QTCLS 474
Query: 615 SASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQN 674
S S + + TRG L NPV D+EN +L + GI+KP+N E WTGIGS N
Sbjct: 475 SGSHPPDFSGTRGVLTANNPVEDLENSNL-----QATAAAGISKPLNPETVGWTGIGSTN 529
Query: 675 EVPRRPLPAPTVQHELVKD--NDPT-QFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSG 731
E+ R LPA QHELV D ND + Q ++ G+QH +S SSFS+ ++WKP+SG
Sbjct: 530 EISRVSLPAFASQHELVVDRKNDVSAQLHIVRNNSGLGSQHIDSQ-SSFSMGERWKPISG 588
Query: 732 TDSDRYSLIPVKDASGMLRHTSQDDPKFSDG-SRTIPVDNSV------RNGISLTTEQDE 784
T ++++P +DAS + S DD + SR I V +NG T EQ++
Sbjct: 589 TYDQYHAVMPSRDASVIPNIASHDDMHVPESESRCITEVQKVASIDEGKNGSLNTMEQED 648
Query: 785 EDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSS 844
KS+ +D P +PK TMSEKWIMD QK+KLL EQNW+LKQQKT++R+ TCF+KLKE+VSS
Sbjct: 649 NGKSMPSDLPMSPKNTMSEKWIMDRQKKKLLNEQNWLLKQQKTEKRIITCFDKLKETVSS 708
Query: 845 SEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQL 904
SEDISAKT+SVIELKKLQLL LQRRLRNDFLNDFFKPI+T+MDRLKS+KKH+HGRRIKQL
Sbjct: 709 SEDISAKTRSVIELKKLQLLQLQRRLRNDFLNDFFKPISTEMDRLKSFKKHKHGRRIKQL 768
Query: 905 EKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKER 964
EKFEQ+MKEERQKRIRERQKEFF EIE HKERLD+VFK+KRERW+G NKYVKEFHKRKER
Sbjct: 769 EKFEQRMKEERQKRIRERQKEFFGEIEVHKERLDDVFKVKRERWKGFNKYVKEFHKRKER 828
Query: 965 IHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS 1024
IHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQEAKS
Sbjct: 829 IHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKS 888
Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
MAS +MD+ V+V EK E A+ENEDE AKHYLESNEKYY+MAHS+KES++EQP+
Sbjct: 889 MAS----DMDDGGAVNVAEKSEAAIENEDE---AKHYLESNEKYYMMAHSVKESIAEQPS 941
Query: 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFL 1144
CLQGGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGPFL
Sbjct: 942 CLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFL 1001
Query: 1145 VVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204
VVVPSSVLPGWESEINFWAP + KIVY GPPEERR+LFKE+IVHQKFNVLLTTYEYLMNK
Sbjct: 1002 VVVPSSVLPGWESEINFWAPSVLKIVYSGPPEERRKLFKERIVHQKFNVLLTTYEYLMNK 1061
Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALL 1264
HDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALL
Sbjct: 1062 HDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALL 1121
Query: 1265 NFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324
NFLLPNIFNSSEDFSQWFNKPFESNGDNS D+ALLSEEENLLIINRLHQVLRPFVLRRLK
Sbjct: 1122 NFLLPNIFNSSEDFSQWFNKPFESNGDNSADQALLSEEENLLIINRLHQVLRPFVLRRLK 1181
Query: 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPY 1384
HKVENELPEKIERLVRCEASAYQKLLM+RVE+NLGSIG++K RSVHNSVMELRNICNHPY
Sbjct: 1182 HKVENELPEKIERLVRCEASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPY 1241
Query: 1385 LSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED 1444
LSQLHAEEVD LIPKHYLPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVME+
Sbjct: 1242 LSQLHAEEVDNLIPKHYLPPIVRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEE 1301
Query: 1445 YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504
YL +KQYRYLRLDGHTSGGDRGALI+ FN+Q+SP+FIFLLSIRAGGVGVNLQAADTVIIF
Sbjct: 1302 YLQWKQYRYLRLDGHTSGGDRGALIELFNRQNSPYFIFLLSIRAGGVGVNLQAADTVIIF 1361
Query: 1505 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA+AEHKLGVANQSITAGFF
Sbjct: 1362 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFF 1421
Query: 1565 DNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEM 1624
DNNTSAEDRREYLESLLRECKKEEA+PVLDDDALNDLLARSESEIDVFE+VDK+R+E EM
Sbjct: 1422 DNNTSAEDRREYLESLLRECKKEEASPVLDDDALNDLLARSESEIDVFETVDKERQEHEM 1481
Query: 1625 ATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY-DAPKTGVSPNVGVKRKGEH 1683
ATW+KL+ G G EP+P +PSRLVTDDDLK YE MKI + PK G + + GVKRK E+
Sbjct: 1482 ATWKKLVLGHGI-SEPVPSIPSRLVTDDDLKVFYETMKITEEVPKAGEASHAGVKRKSEY 1540
Query: 1684 LGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSS 1743
LG+LDTQHYGRGKRAREVRSYEEQWTEEEFEKMC+ +S +SP+ KE + +V S
Sbjct: 1541 LGSLDTQHYGRGKRAREVRSYEEQWTEEEFEKMCKVDSPESPRSKEAVAGEPSASVSGSV 1600
Query: 1744 APAVYSTEPPA--PLLPPPPPS----LDP-----PQLQQSKEVTPPSKRGRGRPRRA--D 1790
AV TE PA PL P P + L P P + TPPSKRGRGRP+R+ D
Sbjct: 1601 EAAVLKTEEPASSPLAPAQPLAPVQPLAPVQPLAPVQPMPQHQTPPSKRGRGRPKRSTVD 1660
Query: 1791 KSPVPVV-LPAPSGTVKVEKDAMTGQSTSASA------SLPGSTTVSGVSGSAQHVMVGI 1843
K P PVV LP+ S T K E + G++ S+ + SLPG G++G + G
Sbjct: 1661 KLPAPVVPLPSLSITAKTET-GLQGETISSISKTGCLDSLPG----QGITG---QIASGA 1712
Query: 1844 APSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASD 1903
AP+S TT + P S+SA AC P+Q KG GR+ Q+G++ PRRRGKK G+V P
Sbjct: 1713 APNSLLTTPVPSIIPASESAPACSPAPIQAKGHGRKTQTGQEAPRRRGKKQGIVPPP--- 1769
Query: 1904 DIP-SPGPDPKTNEQPQSESLNPSGGESTATDGNVS-------------SIPTAPVPDSV 1949
+P S D + ++ + NP G+ VS S P+ PV
Sbjct: 1770 -VPCSQSSDLRQDDLSPGKLTNPVAGQVNVASEVVSNASATQPPTSFPGSTPSKPVTGPN 1828
Query: 1950 SPSAVKGQSGTIDPSSAVAALN--SELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQS 2007
A+ G S ++PS+A+ +++ S++ NL +P+P +Q +G RKTQS
Sbjct: 1829 DQPAI-GVSSNLEPSAAMPSVSSTSQIAPNL-----IPKP--------VQPRGPYRKTQS 1874
Query: 2008 GGVTPRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELS 2067
PRRRGK+QA +P + + A SN+ + N SK+V K++ ++Q +
Sbjct: 1875 AAGAPRRRGKKQAGPTPALPNTMAAASLSSNMNLQKNHMDSSSSKAVVSPKENIVNQA-T 1933
Query: 2068 NKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSM 2127
N I Q + GP + ++ + Q + ++L +T S+ P G T
Sbjct: 1934 NIISEQ------LHQITGPGLESSKSTDNSNQGKETVSL-STSVSTVGPQGCTE------ 1980
Query: 2128 DLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATLPA 2187
S E LS+++ G +SN NI +E T++ + +P
Sbjct: 1981 -----QSQNTEHLSKST----GAAQDATISN-------NI--VDETLKTHSLQDTPAVPV 2022
Query: 2188 LDSITEPYTGSTNTEGISNTIHHVPGAVAART------PSISTSAPAASLSIPPQASVSV 2241
T + S E T+ V A + PS++++ AS S PP V
Sbjct: 2023 CGPPTTSLSSSVTVELSPKTVIDVAPETAPSSQSIHSLPSVASTLQPASQSPPPGF---V 2079
Query: 2242 PVKRHGRKTPTTGEAP 2257
KR GRKTP + P
Sbjct: 2080 QPKRQGRKTPRNRDEP 2095
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551623|ref|XP_002516857.1| conserved hypothetical protein [Ricinus communis] gi|223543945|gb|EEF45471.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1769 (63%), Positives = 1273/1769 (71%), Gaps = 181/1769 (10%)
Query: 743 KDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMS 802
K+A G L T+ D P R G +++ EQDEEDKS +DSPP+PKYTMS
Sbjct: 651 KEARGSLPSTAVQHELVPDRKDNCPRQFQSRGGSNIS-EQDEEDKSASSDSPPSPKYTMS 709
Query: 803 EKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQ 862
EKWIMD QK+KLLVEQNW+LKQQKTKQR++TCF KLKE+V+SSEDI AKTKSVIELKKLQ
Sbjct: 710 EKWIMDQQKKKLLVEQNWVLKQQKTKQRIATCFAKLKETVNSSEDICAKTKSVIELKKLQ 769
Query: 863 LLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRER 922
LL LQRRLR+DFLNDFFKPIT+DMDRLKS+KKH+HGRRIKQLEKFE KMK+ERQKRIRER
Sbjct: 770 LLELQRRLRSDFLNDFFKPITSDMDRLKSFKKHKHGRRIKQLEKFELKMKDERQKRIRER 829
Query: 923 QKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLK 982
QKEFF+EIE HKERL++VFKIKRERW+G NKYVKEFHKRKERIHREKIDRIQREKINLLK
Sbjct: 830 QKEFFAEIEVHKERLEDVFKIKRERWKGFNKYVKEFHKRKERIHREKIDRIQREKINLLK 889
Query: 983 INDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVV 1042
INDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQ+AK MA FEN+MDET+ + V
Sbjct: 890 INDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQDAKVMAKRFENDMDETRIATTV 949
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWL 1102
EK E A +NEDESDQAKHY+ESNEKYY+MAHS+KES+SEQPTCL GGKLREYQM+GLRWL
Sbjct: 950 EKNEAAFDNEDESDQAKHYMESNEKYYMMAHSVKESISEQPTCLHGGKLREYQMNGLRWL 1009
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162
VSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGPFLVVVPSSVLPGWESEINFW
Sbjct: 1010 VSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1069
Query: 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDE 1222
AP IHKIVY GPPEERR+LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKI WHYIIIDE
Sbjct: 1070 APSIHKIVYSGPPEERRKLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDE 1129
Query: 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF 1282
GHRIKNASCKLNA+LKHYQS+HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF
Sbjct: 1130 GHRIKNASCKLNAELKHYQSAHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF 1189
Query: 1283 NKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCE 1342
NKPFESN D+S DEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERL+RC
Sbjct: 1190 NKPFESNADSSADEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCN 1249
Query: 1343 ASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402
ASAYQKLLMKRVEENLGSIGNSK RSVHNSVMELRNICNHPYLSQLH +EVD LIPKH+L
Sbjct: 1250 ASAYQKLLMKRVEENLGSIGNSKARSVHNSVMELRNICNHPYLSQLHVDEVDNLIPKHFL 1309
Query: 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSG 1462
PPI+RLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVME+YLT K+YRYLRLDGHTSG
Sbjct: 1310 PPIIRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLTMKKYRYLRLDGHTSG 1369
Query: 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 1522
+RGALI++FN+ +SP+FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR
Sbjct: 1370 NERGALIEQFNKSNSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR 1429
Query: 1523 IGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1582
IGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR
Sbjct: 1430 IGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR 1489
Query: 1583 ECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEP-L 1641
ECKKEEAAPVLDDDALND+LARSESEIDVFESVDKQRRE+E ATW L+ G G D L
Sbjct: 1490 ECKKEEAAPVLDDDALNDILARSESEIDVFESVDKQRREDERATWNSLLLGHGMDVPGLL 1549
Query: 1642 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPN--VGVKRKGEHLGALDTQHYGRGKRAR 1699
PPLPSRLVTDDDLK+ YE MK+YD PKTG + N VGVKRKG+ +G LDTQHYGRGKRAR
Sbjct: 1550 PPLPSRLVTDDDLKSFYEVMKLYDVPKTGPASNIGVGVKRKGQSVGGLDTQHYGRGKRAR 1609
Query: 1700 EVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE-------- 1751
EVRSYEEQWTEEEFEKMCQ +S +SP +KEE E++LP S A+ TE
Sbjct: 1610 EVRSYEEQWTEEEFEKMCQVDSPESPSMKEEITERNLPKDDSVPVVAICVTEAQAPLPPL 1669
Query: 1752 -------PPAPLLPPPPPSLDPPQLQQSKEVTPPSK--RGRGRPRRADKSPVPVVLPAPS 1802
PP + PPP +++PP LQQSKEVTPPSK RGR R +DKSP VV PA S
Sbjct: 1670 PPPQAMEPPPQAMEPPPQAVEPPPLQQSKEVTPPSKRGRGRPRRTTSDKSPTAVVHPASS 1729
Query: 1803 GTVKVEKDAMTGQSTSASAS-LPGSTTVS--GVSG-SAQHVMVGIAPSSQPTTAFVPVAP 1858
G K + G S S +P S++ S GV+ +A +GIAP S+PTT V V P
Sbjct: 1730 GNGKADSGLQKGIELIPSKSFVPDSSSGSDIGVTNIAAPQASIGIAPCSEPTTPSVSVTP 1789
Query: 1859 GSQSASACPSTP------------------------------------------------ 1870
SQS +A TP
Sbjct: 1790 SSQSTAASVVTPGLQSNSASVVTPGSQSTSASVVTPGFLSNSASVITPGVQSAPAGSPVL 1849
Query: 1871 MQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGES 1930
+Q +GRGR+ QSG Q PRRRGKK +LPA + P P N+Q S+N
Sbjct: 1850 IQSRGRGRKAQSGVQAPRRRGKKQEAILPAPQN---LAVPAPSINDQSHDTSVNQL---V 1903
Query: 1931 TATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVP----- 1985
+ T G VSS+P A S+S + + SGT + S V AL+S+ +APP+
Sbjct: 1904 SVTSGTVSSVPMAHCQSSLSAATTELTSGTTN-SEPVIALDSK------SAPPISSNSTT 1956
Query: 1986 -QPSPQFSSVSMQTKGQSRKTQS--GGVTPRRRGKRQALGSPPISDVSAG---PESKSNL 2039
Q S S Q KGQ RKTQS G TPRRRG++QA+ SP D + +
Sbjct: 1957 VQCSAPCPSAPTQMKGQGRKTQSGAGAGTPRRRGRKQAMISPVYPDALVSQVISDKLLQM 2016
Query: 2040 QSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQ 2099
+SE SG +V M Q+ ++ + + + S +G D+K A+Q V Q
Sbjct: 2017 KSEEPSGS---KATVVMSSQE------THGCEQKDIDLDKSTKFSGQDKKSAKQLDDVAQ 2067
Query: 2100 SNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKG--------GVI 2151
+ QPI SS+ G++P Q+ S D+ + AS T E +ENS SK G I
Sbjct: 2068 TRQPIC------SSAMNIGTSPGQILSADMRDAASLTMEFSAENSPSKAKVGEQGNVGSI 2121
Query: 2152 PIL--ALSNMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIH 2209
+L ++N + E V Q E+KAC PA+ E + GS EG + ++
Sbjct: 2122 SLLTPTITNT-STEVVLSQCSEDKAC----------PAVGHPRESFPGSAAVEGSAKSVP 2170
Query: 2210 HVPGAVAARTPSIST--SAPAASLSIPPQASVSVPVKRHGRKTPTTGEAPRRRGKKQGSG 2267
V + + + I++ S +S SI P+A + VKR GRKT EAP+ RGKKQ
Sbjct: 2171 QVAVEITSSSQPIASCPSVSPSSQSILPEA---IQVKRQGRKTLNRAEAPKHRGKKQVPV 2227
Query: 2268 PSIPDGSAVFDAKLNQHSQNKSRDSFGSKTISLRSKQ----------------------- 2304
+ D A D+++N S NKSRD G +T+SLRS+Q
Sbjct: 2228 STAVDALAGQDSEINSQSHNKSRDLSGRRTMSLRSRQDSDLKEAAHIVQEVCLPSSLVGQ 2287
Query: 2305 ----------------ETADVNDVARVMKEIFSETCSSKAKTGDSSLNEGKDASIRALSS 2348
+TADV DVARVMKEIFSETC+SK+K G+S NEG SI L S
Sbjct: 2288 DPKRKETTGIPAFSRIQTADVTDVARVMKEIFSETCTSKSKMGESFRNEGTSTSITPLLS 2347
Query: 2349 SSAIAEVAKKQSSDDKTCSVTPTVETPPP 2377
+ + EV K Q ++K S T+E P P
Sbjct: 2348 KTHV-EVVKNQRLEEKLPS---TLEAPIP 2372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197603|gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1631 bits (4224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1102 (74%), Positives = 927/1102 (84%), Gaps = 38/1102 (3%)
Query: 783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
DEE+ +L P+PKYTMS+KWIM Q ++LLV+++W LKQQK Q + + FN+LKESV
Sbjct: 451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506
Query: 843 SSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
S S+DISAKTKSVIELKKLQLL LQRRLR++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct: 507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566
Query: 903 QLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
QLEK+EQKMKEERQ+RIRERQKEFF +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct: 567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct: 627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686
Query: 1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
K + S FENE DET+T + + E +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct: 687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 1143 FLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
FLVVVPSSVLPGW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 1262
NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTPLQNNLEELWA
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1263 LLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322
LLNFLLPNIFNSSEDFSQWFNKPF+SNG++S ALLSEEENLLIINRLHQVLRPFVLRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESS---ALLSEEENLLIINRLHQVLRPFVLRR 982
Query: 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct: 983 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1042
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct: 1043 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1102
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
EDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct: 1103 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1162
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct: 1163 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1222
Query: 1563 FFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREE 1622
FFDNNTSAEDR+EYLESLLRE KKEE APVLDDDALNDL+AR ESEID+FES+DKQR+E
Sbjct: 1223 FFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKEN 1282
Query: 1623 EMATWRKLIRGLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG 1681
EM TW L+ G G+D +P +PSRLVT+DDLK LYE MK+ D P VG+KRK
Sbjct: 1283 EMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKD 1342
Query: 1682 EHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 1741
+G LDT YGRGKRAREVRSYEE+ TEEEFEK+CQ ES DSP+ K EG E+SL +
Sbjct: 1343 GSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQGKGEGSERSLAN-DT 1401
Query: 1742 SSAPAVYSTEPPAPLLPPPPPSLDP-----PQLQQSKEVTPPSKRGRGRPRRADKSPVPV 1796
S+ P S++ P P ++ P PQ KE T P KRGRGRP+R DK+ PV
Sbjct: 1402 SNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEETQPIKRGRGRPKRTDKALTPV 1461
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPV 1856
L A V + TG + S++A T + VS + + +S PT++
Sbjct: 1462 SLSA------VSRTQATGNAISSAA-----TGLDFVSSDKR-----LEAASHPTSSLALT 1505
Query: 1857 A------PGSQSASACPS-TPM 1871
+ PG QS A P+ TP+
Sbjct: 1506 SPDLSGPPGFQSLPASPAPTPI 1527
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683830|ref|NP_850116.1| ATPase splayed [Arabidopsis thaliana] gi|330253006|gb|AEC08100.1| ATPase splayed [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1617 bits (4186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1102 (74%), Positives = 929/1102 (84%), Gaps = 35/1102 (3%)
Query: 783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
DEE+ +L P+PKYTMS+KWIM Q ++LLV+++W LKQQK Q + + FN+LKESV
Sbjct: 451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506
Query: 843 SSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
S S+DISAKTKSVIELKKLQLL LQRRLR++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct: 507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566
Query: 903 QLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
QLEK+EQKMKEERQ+RIRERQKEFF +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct: 567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct: 627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686
Query: 1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
K + S FENE DET+T + + E +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct: 687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 1143 FLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
FLVVVPSSVLPGW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 1262
NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTPLQNNLEELWA
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1263 LLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322
LLNFLLPNIFNSSEDFSQWFNKPF+SNG++S +EALLSEEENLLIINRLHQVLRPFVLRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct: 986 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1045
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct: 1046 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1105
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
EDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct: 1106 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1165
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct: 1166 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1225
Query: 1563 FFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREE 1622
FFDNNTSAEDR+EYLESLLRE KKEE APVLDDDALNDL+AR ESEID+FES+DKQR+E
Sbjct: 1226 FFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKEN 1285
Query: 1623 EMATWRKLIRGLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG 1681
EM TW L+ G G+D +P +PSRLVT+DDLK LYE MK+ D P VG+KRK
Sbjct: 1286 EMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKD 1345
Query: 1682 EHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 1741
+G LDT YGRGKRAREVRSYEE+ TEEEFEK+CQ ES DSP+ K EG E+SL +
Sbjct: 1346 GSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQGKGEGSERSLAN-DT 1404
Query: 1742 SSAPAVYSTEPPAPLLPPPPPSLDP-----PQLQQSKEVTPPSKRGRGRPRRADKSPVPV 1796
S+ P S++ P P ++ P PQ KE T P KRGRGRP+R DK+ PV
Sbjct: 1405 SNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEETQPIKRGRGRPKRTDKALTPV 1464
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPV 1856
L A V + TG + S++A T + VS + + +S PT++
Sbjct: 1465 SLSA------VSRTQATGNAISSAA-----TGLDFVSSDKR-----LEAASHPTSSLALT 1508
Query: 1857 A------PGSQSASACPS-TPM 1871
+ PG QS A P+ TP+
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPI 1530
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683833|ref|NP_850117.1| ATPase splayed [Arabidopsis thaliana] gi|330253005|gb|AEC08099.1| ATPase splayed [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1616 bits (4185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1102 (74%), Positives = 929/1102 (84%), Gaps = 35/1102 (3%)
Query: 783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
DEE+ +L P+PKYTMS+KWIM Q ++LLV+++W LKQQK Q + + FN+LKESV
Sbjct: 451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506
Query: 843 SSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
S S+DISAKTKSVIELKKLQLL LQRRLR++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct: 507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566
Query: 903 QLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
QLEK+EQKMKEERQ+RIRERQKEFF +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct: 567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct: 627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686
Query: 1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
K + S FENE DET+T + + E +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct: 687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 1143 FLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
FLVVVPSSVLPGW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 1262
NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTPLQNNLEELWA
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1263 LLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322
LLNFLLPNIFNSSEDFSQWFNKPF+SNG++S +EALLSEEENLLIINRLHQVLRPFVLRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct: 986 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1045
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct: 1046 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1105
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
EDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct: 1106 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1165
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct: 1166 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1225
Query: 1563 FFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREE 1622
FFDNNTSAEDR+EYLESLLRE KKEE APVLDDDALNDL+AR ESEID+FES+DKQR+E
Sbjct: 1226 FFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKEN 1285
Query: 1623 EMATWRKLIRGLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG 1681
EM TW L+ G G+D +P +PSRLVT+DDLK LYE MK+ D P VG+KRK
Sbjct: 1286 EMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKD 1345
Query: 1682 EHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 1741
+G LDT YGRGKRAREVRSYEE+ TEEEFEK+CQ ES DSP+ K EG E+SL +
Sbjct: 1346 GSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQGKGEGSERSLAN-DT 1404
Query: 1742 SSAPAVYSTEPPAPLLPPPPPSLDP-----PQLQQSKEVTPPSKRGRGRPRRADKSPVPV 1796
S+ P S++ P P ++ P PQ KE T P KRGRGRP+R DK+ PV
Sbjct: 1405 SNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEETQPIKRGRGRPKRTDKALTPV 1464
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPV 1856
L A V + TG + S++A T + VS + + +S PT++
Sbjct: 1465 SLSA------VSRTQATGNAISSAA-----TGLDFVSSDKR-----LEAASHPTSSLALT 1508
Query: 1857 A------PGSQSASACPS-TPM 1871
+ PG QS A P+ TP+
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPI 1530
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2693 | ||||||
| TAIR|locus:2062840 | 3574 | SYD "SPLAYED" [Arabidopsis tha | 0.486 | 0.366 | 0.577 | 0.0 | |
| UNIPROTKB|A7Z019 | 1606 | SMARCA4 "Transcription activat | 0.228 | 0.383 | 0.439 | 6.2e-152 | |
| ZFIN|ZDB-GENE-030131-5964 | 1568 | smarca2 "SWI/SNF related, matr | 0.228 | 0.392 | 0.444 | 6.5e-152 | |
| UNIPROTKB|A5PKK5 | 1554 | SMARCA2 "SMARCA2 protein" [Bos | 0.256 | 0.445 | 0.415 | 5.5e-151 | |
| ZFIN|ZDB-GENE-030605-1 | 1627 | smarca4 "SWI/SNF related, matr | 0.233 | 0.385 | 0.427 | 3.4e-150 | |
| MGI|MGI:99603 | 1577 | Smarca2 "SWI/SNF related, matr | 0.256 | 0.438 | 0.415 | 6.5e-150 | |
| UNIPROTKB|E9PTG1 | 1597 | Smarca2 "Protein Smarca2" [Rat | 0.256 | 0.433 | 0.415 | 1e-149 | |
| UNIPROTKB|P51531 | 1590 | SMARCA2 "Probable global trans | 0.256 | 0.435 | 0.415 | 1.1e-149 | |
| UNIPROTKB|F1MJ46 | 1604 | SMARCA4 "Transcription activat | 0.227 | 0.382 | 0.437 | 4.1e-149 | |
| UNIPROTKB|J9P5P2 | 1574 | SMARCA2 "Uncharacterized prote | 0.256 | 0.439 | 0.415 | 7.4e-149 |
| TAIR|locus:2062840 SYD "SPLAYED" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3651 (1290.3 bits), Expect = 0., Sum P(5) = 0.
Identities = 785/1359 (57%), Positives = 921/1359 (67%)
Query: 783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
DEE+ +L P+PKYTMS+KWIM Q ++LLV+++W LKQQK Q + + FN+LKESV
Sbjct: 451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506
Query: 843 SSSEDISAKTKSVIEXXXXXXXXXXXXXXNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
S S+DISAKTKSVIE ++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct: 507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566
Query: 903 QLXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
QL FF +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct: 567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626
Query: 963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct: 627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686
Query: 1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
K + S FENE DET+T + + E +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct: 687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745
Query: 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
F GW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXX 1262
NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTP
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1263 XXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRR 1322
IFNSSEDFSQWFNKPF+SNG++S + IINRLHQVLRPFVLRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct: 986 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1045
Query: 1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct: 1046 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1105
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
EDYLT K Y+YLRLDG TSGGDRGALID FN+ SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct: 1106 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1165
Query: 1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
+FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct: 1166 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1225
Query: 1563 FFDNNTSAEDRREYLESLLRECKKEEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREE 1622
FFDNNTSAEDR+EYLESLLRE KKEE R ESEID+FES+DKQR+E
Sbjct: 1226 FFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKEN 1285
Query: 1623 EMATWRKLIRGLGTDG-EPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKG 1681
EM TW L+ G G+D +P +PSRLVT+DDLK LYE MK+ D P VG+KRK
Sbjct: 1286 EMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKD 1345
Query: 1682 EHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVS 1741
+G LDT YGRGKRAREVRSYEE+ TEEEFEK+CQ ES DSP+ K EG E+SL +
Sbjct: 1346 GSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQGKGEGSERSLAND-T 1404
Query: 1742 SSAPAVYSTEXXXXXXXXXXXXXXXXX-----XXXSKEVTPPSKXXXXXXXXADKSPVPV 1796
S+ P S++ KE T P K DK+ PV
Sbjct: 1405 SNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEETQPIKRGRGRPKRTDKALTPV 1464
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPXXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPV 1856
L A S T TG + S++A+ A H +A +S + P
Sbjct: 1465 SLSAVSRT------QATGNAISSAATGLDFVSSDKRLEAASHPTSSLALTSPDLSG--P- 1515
Query: 1857 APGSQSASACPS-TPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTN 1915
PG QS A P+ TP++ +GRGR G RG+++ VL ++ I + + T+
Sbjct: 1516 -PGFQSLPASPAPTPIRGRGRGRSRGRGAG----RGRRVEGVLHGSNSSI-TQRTETATS 1569
Query: 1916 EQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKG-QSGTIDPSSAVAALNSEL 1974
+E+ + S + VS +P A + +P V S T S AA + +L
Sbjct: 1570 LASDAEATKFALPRSASEI--VSRVPKANEGSTSNPDQVSPVHSATTALRSDKAA-DKDL 1626
Query: 1975 NTNLATAXXXXXXXXXXXXXXMQTKGQSRKTQS--GGVTPRRRG-KRQALGSPPISD--- 2028
+ + K + K + GV+ + G +Q L P +
Sbjct: 1627 DAPPGFDSGSHVQTLNVLENSSERKAFAVKKRPLIQGVSSQHPGPNKQPLDLPVSTSSTL 1686
Query: 2029 VSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATS-ADVAGP- 2086
+ GP N S G SKS S G+ Q ++ +++ +D P
Sbjct: 1687 LGGGPVQNQNAVSSVCDG----SKSPSEGRTYTALQGVTTAPSDATLPMSSQPSDATLPM 1742
Query: 2087 DQKPAEQSVRVVQSNQP---INLPATHDSSSQPS-GSTP 2121
+P +V ++N P LPA + PS G TP
Sbjct: 1743 SSQPVGSTVEAQEANVPSLPAALPAKRRVRNLPSRGETP 1781
|
|
| UNIPROTKB|A7Z019 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 6.2e-152, Sum P(6) = 6.2e-152
Identities = 287/653 (43%), Positives = 389/653 (59%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 676 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 733
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 734 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 793
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 852
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 853 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 910
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 911 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 966
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1026
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1027 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1142
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
IFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1143 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1202
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXX 1599
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1203 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVN 1262
Query: 1600 XXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1263 QMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1310
|
|
| ZFIN|ZDB-GENE-030131-5964 smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 6.5e-152, Sum P(6) = 6.5e-152
Identities = 288/648 (44%), Positives = 395/648 (60%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + +E+ ET ++E + V++E S QA S++ YY +AH++ E V
Sbjct: 659 EEKKVIDPNSDEVSETAAKHIIESAKQDVDDE-YSSQAGQ--TSSQSYYGVAHAVIERVD 715
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q T L G L++YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q I LI YLME K
Sbjct: 716 KQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRLN 775
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E++ WAP I KI Y G P RR L + + KFNVL+TTYEY
Sbjct: 776 GPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQ-LRSGKFNVLITTYEY 834
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 835 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 892
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 893 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 948
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE-ENL----GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ + + GS + KG+ ++
Sbjct: 949 LRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLM 1008
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTL-IPKHYL--PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+L+ ICNHPY+ Q H EE + L P + P + R GK E+LDR+LPKLKAT
Sbjct: 1009 NTIMQLKKICNHPYMFQ-HIEESFAEHLGFPNGIISGPDLYRASGKFELLDRILPKLKAT 1067
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ ++EDY ++ + YLRLDG T DR L+ KFN++ S +FIFLLS
Sbjct: 1068 NHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLS 1127
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1128 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1187
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + E R
Sbjct: 1188 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVPDDETLNQMIAR 1247
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
+E E ++F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1248 NEDEFELFMRMDLDRRREDARNPKRKPRLMEED-----ELPSWILKDD 1290
|
|
| UNIPROTKB|A5PKK5 SMARCA2 "SMARCA2 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.5e-151, Sum P(6) = 5.5e-151
Identities = 304/731 (41%), Positives = 419/731 (57%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 639 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 695
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 696 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 755
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 756 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 814
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 815 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 872
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 873 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 928
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 929 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 988
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 989 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1047
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1048 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1107
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1108 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1167
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + EE R
Sbjct: 1168 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1227
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY 1664
E E D+F +D RR E+ ++ R + D LPS ++ DD A E +
Sbjct: 1228 REEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD---AEVERLTCE 1279
Query: 1665 DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 1724
+ + +R ++ AL + + RA E + EE E +K + + D
Sbjct: 1280 EEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKKRKRRRNVDK 1336
Query: 1725 PKLKEEGLEKS 1735
KE+ +EK+
Sbjct: 1337 DPAKED-VEKA 1346
|
|
| ZFIN|ZDB-GENE-030605-1 smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1276 (454.2 bits), Expect = 3.4e-150, Sum P(6) = 3.4e-150
Identities = 285/666 (42%), Positives = 394/666 (59%)
Query: 1006 KETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESN 1065
++ E+ Q + +E K + ++ E ++E + V++E + A ++
Sbjct: 684 EDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEHAKQDVDDE-YGNSA--FIRGL 740
Query: 1066 EKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQ 1125
+ YY +AH++ E V +Q + L G+L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q
Sbjct: 741 QSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQ 800
Query: 1126 VIALICYLMETKNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185
IALI YLME K GPF W E + WAP + K+ Y G P RR F
Sbjct: 801 TIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRA-FLPI 859
Query: 1186 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSH 1244
+ KFNVL+TTYEY++ D+ L+K++W Y+I+DEGHR+KN CKL L HY +
Sbjct: 860 LRSGKFNVLVTTYEYIIK--DKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPR 917
Query: 1245 RLLLTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXX 1304
R+LLTGTP IF S F QWFN PF G+
Sbjct: 918 RVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEET 973
Query: 1305 XXIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--G 1359
II RLH+VLRPF+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L G
Sbjct: 974 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1033
Query: 1360 SIGNSKGR----SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------R 1407
S + KG+ ++ N++M+LR ICNHPY+ Q H EE +H + IV R
Sbjct: 1034 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGSDLYR 1089
Query: 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGA 1467
GK E+LDR+LPKL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG
Sbjct: 1090 ASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGM 1149
Query: 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527
L+ FN +FIFLLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+
Sbjct: 1150 LLKNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1209
Query: 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKK 1586
+V VLR TV +VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E +
Sbjct: 1210 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQD 1269
Query: 1587 EEXXXXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPS 1646
EE RSE E D F +D RR EE ++ R + D LP+
Sbjct: 1270 EEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEED-----ELPT 1324
Query: 1647 RLVTDD 1652
++ DD
Sbjct: 1325 WIMKDD 1330
|
|
| MGI|MGI:99603 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 6.5e-150, Sum P(5) = 6.5e-150
Identities = 304/731 (41%), Positives = 420/731 (57%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 662 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 718
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 719 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 778
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 779 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 837
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 838 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 895
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 896 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 951
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 952 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1011
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1012 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1070
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1071 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1130
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1131 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1190
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + EE R
Sbjct: 1191 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1250
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY 1664
E E D+F +D RR E+ ++ R + D LPS ++ DD A E +
Sbjct: 1251 REEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD---AEVERLTCE 1302
Query: 1665 DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 1724
+ + +R ++ AL + + RA E + EE E +K + + D
Sbjct: 1303 EEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKKRKRRRNVDK 1359
Query: 1725 PKLKEEGLEKS 1735
+KE+ +EK+
Sbjct: 1360 DPVKED-VEKA 1369
|
|
| UNIPROTKB|E9PTG1 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 1.0e-149, Sum P(5) = 1.0e-149
Identities = 304/731 (41%), Positives = 420/731 (57%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 664 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 720
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 721 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 780
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 839
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 840 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 953
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 954 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1014 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1072
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + EE R
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1252
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY 1664
E E D+F +D RR E+ ++ R + D LPS ++ DD A E +
Sbjct: 1253 REEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD---AEVERLTCE 1304
Query: 1665 DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 1724
+ + +R ++ AL + + RA E + EE E +K + + D
Sbjct: 1305 EEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKKRKRRRNVDK 1361
Query: 1725 PKLKEEGLEKS 1735
+KE+ +EK+
Sbjct: 1362 DPVKED-VEKA 1371
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| UNIPROTKB|P51531 SMARCA2 "Probable global transcription activator SNF2L2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 1.1e-149, Sum P(5) = 1.1e-149
Identities = 304/731 (41%), Positives = 419/731 (57%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 657 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 713
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 714 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 773
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 774 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 832
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 833 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 891 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 946
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 947 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 1007 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1065
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1066 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1125
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1126 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1185
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + EE R
Sbjct: 1186 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1245
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY 1664
E E D+F +D RR E+ ++ R + D LPS ++ DD A E +
Sbjct: 1246 REEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD---AEVERLTCE 1297
Query: 1665 DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 1724
+ + +R ++ AL + + RA E + EE E +K + + D
Sbjct: 1298 EEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKKRKRRRNVDK 1354
Query: 1725 PKLKEEGLEKS 1735
KE+ +EK+
Sbjct: 1355 DPAKED-VEKA 1364
|
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| UNIPROTKB|F1MJ46 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 4.1e-149, Sum P(6) = 4.1e-149
Identities = 286/653 (43%), Positives = 388/653 (59%)
Query: 1019 LQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKES 1078
++E K + +++ E ++E + V++E QA + YY +AH++ E
Sbjct: 676 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA--LARGLQSYYAVAHAVTER 733
Query: 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN 1138
V +Q + G L++YQ+ GL WLVSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 734 VDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 793
Query: 1139 DRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTY 1198
GPF W E + WAP + K+ Y G P RR F ++ KFNVLLTTY
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA-FVPQLRSGKFNVLLTTY 852
Query: 1199 EYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXX 1257
EY++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + RLLLTGTP
Sbjct: 853 EYIIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 910
Query: 1258 XXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRP 1317
IF S F QWFN PF G+ II RLH+VLRP
Sbjct: 911 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEK----VDLNEEETILIIRRLHKVLRP 966
Query: 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--L---GSIGNSKGR----S 1368
F+LRRLK +VE +LPEK+E +++C+ SA Q++L + ++ L GS + KG+ +
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKT 1026
Query: 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLLP 1420
+ N++M+LR ICNHPY+ Q H EE +H + IV R GK E+LDR+LP
Sbjct: 1027 LMNTIMQLRKICNHPYMFQ-HIEES---FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KL+AT+H+VL F MT L+ +MEDY ++ ++YLRLDG T DRG L+ FN+ S +F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPGSEYF 1141
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
I LLS RAGG+G+NLQ+ADTVIIFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +V
Sbjct: 1142 I-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1200
Query: 1541 EEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXX 1599
EE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE
Sbjct: 1201 EEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVN 1260
Query: 1600 XXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 1652
R E E D+F +D RR EE ++ R + D LPS ++ DD
Sbjct: 1261 QMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED-----ELPSWIIKDD 1308
|
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| UNIPROTKB|J9P5P2 SMARCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 7.4e-149, Sum P(5) = 7.4e-149
Identities = 304/731 (41%), Positives = 419/731 (57%)
Query: 1021 EAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVS 1080
E K + E+ E ++E A ++ D+ ++ ++ YY +AH+I E V
Sbjct: 641 EEKILLDPNSEEVSEKDAKQIIET---AKQDVDDEYSMQYSARGSQSYYTVAHAISERVE 697
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+Q L G L+ YQ+ GL W+VSLYNN LNGILADEMGLGKT+Q IALI YLME K
Sbjct: 698 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 1141 GPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
GP+ W E + WAP + KI Y G P RR L + + KFNVLLTTYEY
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEY 816
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPXXXXXXX 1259
++ D+ L+KI+W Y+I+DEGHR+KN CKL L HY + R+LLTGTP
Sbjct: 817 IIK--DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 1260 XXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFV 1319
IF S F QWFN PF G+ II RLH+VLRPF+
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER----VDLNEEETILIIRRLHKVLRPFL 930
Query: 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---L--GSIGNSKGR----SVH 1370
LRRLK +VE++LPEK+E +++C+ SA QK+L + ++ L GS + KG+ ++
Sbjct: 931 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 990
Query: 1371 NSVMELRNICNHPYLSQLHAEE--VDTLIPKHYL---PPIVRLCGKLEMLDRLLPKLKAT 1425
N++M+LR ICNHPY+ Q H EE + L + + + R GK E+LDR+LPKL+AT
Sbjct: 991 NTIMQLRKICNHPYMFQ-HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT 1049
Query: 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485
+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +FIFLLS
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 1486 IRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545
RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +VEE++
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 1546 ASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR-ECKKEEXXXXXXXXXXXXXXXR 1604
A+A++KL V + I AG FD +S+ +RR +L+++L E + EE R
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1229
Query: 1605 SESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIY 1664
E E D+F +D RR E+ ++ R + D LPS ++ DD A E +
Sbjct: 1230 REEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD---AEVERLTCE 1281
Query: 1665 DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDS 1724
+ + +R ++ AL + + RA E + EE E +K + + D
Sbjct: 1282 EEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAIEDGNLEEMEEEVRLKKRKRRRNVDK 1338
Query: 1725 PKLKEEGLEKS 1735
KE+ +EK+
Sbjct: 1339 DPAKED-VEKA 1348
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00019834001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1491 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2693 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 1e-153 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-113 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-108 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 9e-32 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-27 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-26 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 3e-20 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-20 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-10 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-08 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 3e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 3e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 9e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 2e-04 | |
| pfam03879 | 105 | pfam03879, Cgr1, Cgr1 family | 2e-04 | |
| smart00951 | 36 | smart00951, QLQ, QLQ is named after the conserved | 4e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.003 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 0.004 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 505 bits (1301), Expect = e-153
Identities = 261/612 (42%), Positives = 360/612 (58%), Gaps = 60/612 (9%)
Query: 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNK 1003
KRE+ R +KE K+K +++I +I E+ N D+ + R+
Sbjct: 59 KREKAR-----LKELKKQK----KQEIQKI-LEQQNAAIDADMNNKGK-------GRLKY 101
Query: 1004 LLKETEKYLQKL-GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
LL++TE + G + AK + T+ E EDE YL
Sbjct: 102 LLQQTEIFAHFAKGDQSASAKKAKGRGRHASKLTE------------EEEDEE-----YL 144
Query: 1063 ESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGK 1122
+ E + + V QP+C++G K+R+YQ++GL WL+ LY N +NGILADEMGLGK
Sbjct: 145 KEEEDGLGGSGGTRLLV--QPSCIKG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGK 201
Query: 1123 TVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLF 1182
T+Q I+L+ YL E + GP +VV P S L W +EI + P + + + G PEER
Sbjct: 202 TLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQR 261
Query: 1183 KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
+E +V KF+V +T++E M ++ L + W YIIIDE HRIKN + L+ ++ + +
Sbjct: 262 EELLVAGKFDVCVTSFE--MAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 319
Query: 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302
++RLL+TGTPLQNNL ELWALLNFLLP IF+S+E F +WF + E
Sbjct: 320 NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF--------------QISGEN 365
Query: 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 1362
+ ++ +LH+VLRPF+LRRLK VE LP K E +++ S QK K + + +
Sbjct: 366 DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVV 425
Query: 1363 NSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 1420
N+ G + + N M+LR CNHPYL Q AE +L V GK+ +LD+LLP
Sbjct: 426 NAGGERKRLLNIAMQLRKCCNHPYLFQ-GAEPGPPYTTGEHL---VENSGKMVLLDKLLP 481
Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
KLK D RVL FS MTRLLD++EDYL ++ Y+Y R+DG+T G DR A ID FN+ S F
Sbjct: 482 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
+FLLS RAGG+G+NL AD VI++D+DWNPQVDLQAQ RAHRIGQK++V V RF T T+
Sbjct: 542 VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601
Query: 1541 EEQVRASAEHKL 1552
EE+V A KL
Sbjct: 602 EEKVIERAYKKL 613
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Length = 1033 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-113
Identities = 239/785 (30%), Positives = 348/785 (44%), Gaps = 72/785 (9%)
Query: 835 FNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDF-----LNDFFKP---ITTDM 886
S SSS S +L + + LR L D
Sbjct: 67 NGLRYRSPSSSLPGSRFILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKE 126
Query: 887 DRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRE 946
L+ K K L E+ + + F +
Sbjct: 127 LLLRGEIKRVLILVPKTLRAQWVVELLEKFNIRLAVLDKEGLRYLLKQYDAYNPFSTEDL 186
Query: 947 RWRGVNKYVKEFHKRKE---RIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNK 1003
++ + KR+E + D + ++ + L ++ L ++ + + + +
Sbjct: 187 VLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLEYELLKQ 246
Query: 1004 LLKETEKYLQKLG----SKLQEAKSMASHF--ENEMDETQTVSVVEKYEPAVENEDESDQ 1057
L ++ L L S E F +D + + + E V +
Sbjct: 247 LAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLADLSQILEKFVRETLKLSA 306
Query: 1058 AKHYLESNEKYYLMAHSIKESVSEQPTC-LQGGKLREYQMSGLRWLVS-LYNNQLNGILA 1115
E E L + E + P +LR YQ+ G+ WL L +N L GILA
Sbjct: 307 RDLKDELKE--LLAELRLSEDLLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILA 364
Query: 1116 DEMGLGKTVQVIALICYLME-TKNDRGPFLVVVPSSVLPGWESEI-NFWAPRIHKIVYCG 1173
D+MGLGKTVQ IAL+ L+E K GP L+VVP+S+L W+ E F +VY G
Sbjct: 365 DDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHG 424
Query: 1174 PP-------EERRRLFKEKIVHQKFNVLLTTYEYLMNKH-DRPKLSKIQWHYIIIDEGHR 1225
E R L K +V F+V++TTYE L D L KI+W +++DE HR
Sbjct: 425 EKSELDKKREALRDLLKLHLV-IIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHR 483
Query: 1226 IKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN-FLLPNIFNSSED-FSQWFN 1283
IKN L+ ++ +RL LTGTPL+N L ELW+LL FL P + +S F++ F
Sbjct: 484 IKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFE 543
Query: 1284 KPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKH--KVENELPEKIERLVRC 1341
KP ++ D P EA L I L ++L PF+LRR K +V ELP KIE+++ C
Sbjct: 544 KPIQAEEDIGPLEARE------LGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLEC 597
Query: 1342 EASAYQ----KLLMKRVEENLGSIGNSKGRSVH------------NSVMELRNICNHPYL 1385
E S Q + L++ E+N + + + + LR ICNHP L
Sbjct: 598 ELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPAL 657
Query: 1386 ---------SQLHAEEVDTLIPKHYLPPIVRLC-GKLEMLDRLLP---KLKATDHRVLFF 1432
++ + + P+++L GKL+ LD LL + H+VL F
Sbjct: 658 VDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIF 717
Query: 1433 STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
S T +LD++EDYL +Y+RLDG T R LID+FN D +FLLS++AGG+G
Sbjct: 718 SQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNA-DEEEKVFLLSLKAGGLG 776
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+NL ADTVI+FD WNP V+LQA RAHRIGQKR V V R T T+EE++ E K
Sbjct: 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQ 836
Query: 1553 GVANQ 1557
+ +
Sbjct: 837 ELLDS 841
|
Length = 866 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-108
Identities = 142/304 (46%), Positives = 185/304 (60%), Gaps = 16/304 (5%)
Query: 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI-CYLMETKNDRGPFLVVVPSSVL 1152
YQ+ G+ WL+SL +N L GILADEMGLGKT+Q IAL+ YL E K+ RGP LVV P S L
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 1153 PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI-VHQKFNVLLTTYEYLM-NKHDRPKL 1210
W +E WAP + +VY G ER +L + ++V++TTYE L +K L
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPN 1270
+K++W +++DE HR+KN+ KL LK ++ +RLLLTGTP+QNNLEELWALLNFL P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENE 1330
F S + F +WFN P + DN E+ INRLH++L+PF+LRR K VE
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKN----LEKGKEGINRLHKLLKPFLLRRTKDDVEKS 236
Query: 1331 LPEKIERLVRCEASA-----YQKLLMKRVE----ENLGSIGNSKGRSVHNSVMELRNICN 1381
LP K E ++ C S Y+KLL KR G N S+ N +M+LR ICN
Sbjct: 237 LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICN 296
Query: 1382 HPYL 1385
HPYL
Sbjct: 297 HPYL 300
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 9e-32
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149
LR YQ + L+S + ILA G GKT+ + ++ + G LV+VP+
Sbjct: 8 PLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEALK-RGKGGRVLVLVPT 63
Query: 1150 SVL-PGWESEINFWAPRIHKI---VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH 1205
L W E+ P + +Y G + +R K+ K ++L+TT L++
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGG---DSKREQLRKLESGKTDILVTTPGRLLDLL 120
Query: 1206 DRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKH-YQSSHRLLLTGTPLQNNLEELWA 1262
+ KLS +I+DE HR+ + +L LK ++ LLL+ TP + L
Sbjct: 121 ENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180
Query: 1263 LLN--FLLPNIFNSSEDFSQW 1281
LN + F E Q+
Sbjct: 181 FLNDPVFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 1469
KLE L LL + +VL F ++LD + + L + L G S +R ++
Sbjct: 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVL 71
Query: 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529
F + + + L++ G++L VI +D W+P LQ RA R GQK
Sbjct: 72 KDFREGE---IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128
Query: 1530 LVL 1532
++L
Sbjct: 129 ILL 131
|
Length = 131 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE-INFWAPRIHKI 1169
+ +LA G GKT+ + I L++ G LV+ P+ L +E + K+
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229
Y +EK++ K ++++ T L+++ +R KLS + +I+DE HR+ N
Sbjct: 61 GYLI--GGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118
Query: 1230 SCK---LNADLKHYQSSHRLLLTGTP 1252
L LK + LLL+ TP
Sbjct: 119 GFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-20
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1440 DVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 1499
+ + + L + RL G S +R ++DKFN L++ G++L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKI---KVLVATDVAERGLDLPGVD 57
Query: 1500 TVIIFDTDWNPQVDLQAQARAHRIG 1524
VII+D W+P +Q RA R G
Sbjct: 58 LVIIYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-20
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503
L + RL G S +R +++ F S L++ G G++L + VI
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKV---LVATDVAGRGIDLPDVNLVIN 57
Query: 1504 FDTDWNPQVDLQAQARAHRIG 1524
+D WNP +Q RA R G
Sbjct: 58 YDLPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-10
Identities = 78/437 (17%), Positives = 113/437 (25%), Gaps = 53/437 (12%)
Query: 1737 PTVVSSSAPAVYSTEPPAPLLP-PPPPSLDPPQLQQSKEVTPPSKRGRGRPRRADKSPVP 1795
P AP +P P P P PP P ++ P P
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 1796 VVLPAPSGTVKVEKDAMTGQSTSASASLPGST------TVSGVSGSAQHVMVGIAPSSQP 1849
PAP + + G++ AS+ TV ++ A P P
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712
Query: 1850 --TTAFVPVAPGSQSA-SACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIP 1906
+ P+ PG +A A P+ P P P G P
Sbjct: 2713 HALVSATPLPPGPAAARQASPALPAAP------------AP--PAVPAGPATPGGPARPA 2758
Query: 1907 SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSA 1966
P P P + +G T A S S ++ DP +A
Sbjct: 2759 RP-PTTAGPPAPAPPAAPAAGPPRRLT-------RPAVASLSESRESLPSPWDPADPPAA 2810
Query: 1967 VAALNSELNTNLATAPPVPQPSPQFSSVSMQTKG--QSRKTQSGGVTP----RRRGKRQA 2020
V A + L + A P+P P+ + G G V P RRR ++
Sbjct: 2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
Query: 2021 LGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCGVATS 2080
A P + + +S+S E + Q P
Sbjct: 2871 --PAAKPAAPARPPVRRLARPA-------VSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921
Query: 2081 ADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVL 2140
P +P Q P + +G VP LG + V
Sbjct: 2922 QPPPPPQPQPPPPPPPRPQP------PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
Query: 2141 SENSSSKGGVIPILALS 2157
A S
Sbjct: 2976 RFRVPQPAPSREAPASS 2992
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 6e-08
Identities = 60/331 (18%), Positives = 83/331 (25%), Gaps = 29/331 (8%)
Query: 1719 AESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPP 1778
A+ P E + PA PA P PP++ P
Sbjct: 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA 2758
Query: 1779 SKRGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQH 1838
P P P T + + S P + V A
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA-VLAPAAA 2817
Query: 1839 VMVGIAPSS--QPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGL 1896
+ +P+ P T+ P AP PS P+ G + G V RR +
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL-----GGSVAPGGDVRRRPPSRSPA 2872
Query: 1897 VLPAASDDIP-SPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVK 1955
PAA P P + +S +L P E P AP P P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ-------PQAPPPPQPQPQPPP 2925
Query: 1956 GQSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRR 2015
P P P P + + G + G + P R
Sbjct: 2926 PPQPQPPPPPP----------PRPQPPLAPTTDPAGAG---EPSGAVPQPWLGALVPGRV 2972
Query: 2016 GKRQALGSPPISDVSAGPESKSNLQSENNSG 2046
+ P A S L + S
Sbjct: 2973 AVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
|
Length = 3151 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-06
Identities = 46/325 (14%), Positives = 79/325 (24%), Gaps = 20/325 (6%)
Query: 1718 QAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTP 1777
A P + S + +S AP P S PP P
Sbjct: 60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPP--------GP 111
Query: 1778 PSKRGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQ 1837
S P V ++ +A + S + S Q
Sbjct: 112 SSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQ 171
Query: 1838 -HVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPR---RRGKK 1893
+ + + P +P ++ + P P+ R G+
Sbjct: 172 AALPLSSPEETARA----PSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS 227
Query: 1894 IGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 1953
A+S D S P++E P + T + S P
Sbjct: 228 AADDAGASSSD-SSSSESSGCGWGPENE--CPLPRPAPITLPTRIWEASGWNGPSSRPGP 284
Query: 1954 VKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPR 2013
S + S + + + ++ S S S T S ++ V+P
Sbjct: 285 ASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG 344
Query: 2014 RRGKRQALGSPPISDVSAGPESKSN 2038
R S P + +
Sbjct: 345 PSPSRSPSPSRP-PPPADPSSPRKR 368
|
Length = 1352 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-06
Identities = 55/340 (16%), Positives = 80/340 (23%), Gaps = 37/340 (10%)
Query: 1710 EEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQL 1769
E S S + PT S+P PP PP P L
Sbjct: 79 APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEML 138
Query: 1770 QQSKEVTPPSKRGR-------------GRPRRADKSPVPVV------LPAPSGTVKVEKD 1810
+ PP R P+ +P
Sbjct: 139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198
Query: 1811 AMTGQSTSASASLPGST-TVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPST 1869
S P S S + SS +++ G + CP
Sbjct: 199 PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLP 258
Query: 1870 PMQPKGRGRRIQSGEQ-VPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGG 1928
P RI G ++S SP P P +P G
Sbjct: 259 RPAPITLPTRIWEASGWNGPSSRP--GPASSSSSPRERSPSPSPS----------SPGSG 306
Query: 1929 ESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPS 1988
+ ++ SS + +S S S + + + S + PP S
Sbjct: 307 PAPSSPRASSSS--SSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364
Query: 1989 PQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPISD 2028
P+ + S G RRR + G D
Sbjct: 365 PRKRPRPSRAPSSPA--ASAGRPTRRRARAAVAGRARRRD 402
|
Length = 1352 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-06
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 17/195 (8%)
Query: 1059 KHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEM 1118
K YL S L + + E + + +LR YQ L LV + G++
Sbjct: 5 KQYLSSKGAEELADYVLDEGLPLKLIVAFEFELRPYQEEALDALVKNRRTERRGVIVLPT 64
Query: 1119 GLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEER 1178
G GKTV I L + LV+VP+ L ++ WA + K + +E
Sbjct: 65 GAGKTVVAAEAIAEL------KRSTLVLVPTKEL------LDQWAEALKK--FLLLNDEI 110
Query: 1179 RRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238
+ + V + T + L + + ++ II DE H + S L+
Sbjct: 111 GIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--YRRILE 168
Query: 1239 HYQSSHRLL-LTGTP 1252
+++ L LT TP
Sbjct: 169 LLSAAYPRLGLTATP 183
|
Length = 442 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-06
Identities = 32/226 (14%), Positives = 92/226 (40%), Gaps = 23/226 (10%)
Query: 835 FNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKK 894
+L+E E++ A+ + L+ ++R + L + + + ++++ ++
Sbjct: 241 LAELEEEKERLEELKARLLEIESLELEA-----LKIREEELRELERLLEELEEKIERLEE 295
Query: 895 H------------RHGRRIKQLEKFEQKMKEERQ--KRIRERQKEFFSEIEAHKERLDEV 940
+++LE+ +K+K + +++ E+ ++ SE+E E +E+
Sbjct: 296 LEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNEL 355
Query: 941 FKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDR 1000
K+ ER + + + ++E K E + Q E+ ++ +++ +
Sbjct: 356 AKLLEERLKELEERLEELEKELE---KALERLKQLEEAIQELKEELAELSAALEEIQE-E 411
Query: 1001 VNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYE 1046
+ +L KE E+ ++L +E K + + ++ +
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAG 457
|
Length = 908 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-05
Identities = 50/247 (20%), Positives = 68/247 (27%), Gaps = 34/247 (13%)
Query: 1737 PTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPPSKRGRGRPRRADKSPVPV 1796
P V + A A+ PA LPPP + T P P P
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQP----------TAPPP---------PPGPPPP 2848
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPV 1856
LP G+V D + + A+ P + V A+ P+ +T +
Sbjct: 2849 SLP-LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR-------PAVSRSTESFAL 2900
Query: 1857 APGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNE 1916
P P P P Q Q P + P +P DP
Sbjct: 2901 PPDQPERPPQPQAPPPP-------QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953
Query: 1917 QPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNT 1976
+P P G V S A T S V++ S L
Sbjct: 2954 EPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLAL 3013
Query: 1977 NLATAPP 1983
+ T PP
Sbjct: 3014 HEETDPP 3020
|
Length = 3151 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-05
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 899 RRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEF 958
+ I+QLE+ E+K+KE R + + E EIE K L E+ E ++K +
Sbjct: 723 KEIEQLEQEEEKLKE-RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
Query: 959 HKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSK 1018
+ + R+ +I IQ E ++ +E + R+ L+E E+ L +L +
Sbjct: 782 NDLEARLSHSRIPEIQAE------LSKLEEEVS--------RIEARLREIEQKLNRLTLE 827
Query: 1019 LQEAKSMASHFENEMDETQ 1037
+ + + + + +
Sbjct: 828 KEYLEKEIQELQEQRIDLK 846
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-05
Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 11/190 (5%)
Query: 1814 GQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSAS-ACPSTPMQ 1872
G + ++P + + A P+ T A ++A+ A +
Sbjct: 371 GVPARVAGAVPAPGARAAAAVGAS-----AVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425
Query: 1873 PKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTA 1932
P + ++ + A + D + + P SG S
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-----SGSASAP 480
Query: 1933 TDGNVSSIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQFS 1992
P P + +PSA + + A A+ AP P+P +
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
Query: 1993 SVSMQTKGQS 2002
+ + + G +
Sbjct: 541 APAARAGGAA 550
|
Length = 830 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-04
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 887 DRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRE 946
L K RRI++LEKF ++ E ++ I+E++KE + E E+ +++ E
Sbjct: 165 KNLGEVIKEIK-RRIERLEKFIKR-TENIEELIKEKEKELEEVLREINEISSELPELREE 222
Query: 947 RWRGVNKYVKEFHKRKERIH--------REKIDRIQREKINLL--KINDVEGYLRMVQDA 996
+ K VKE + KE I E R EKI L +I +++ + +++
Sbjct: 223 L-EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE- 280
Query: 997 KSDRVNKLLKETEKY------LQKLGSKLQEAKSMASHFENEMDETQTV-----SVVEKY 1045
K + +L ++ E+Y ++ +L+E + S E E++ + E+
Sbjct: 281 KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
Query: 1046 EPAVENEDESDQAKHYLESNEKYYLMAHSIK---ESVSEQPTCLQGGKLRE 1093
E + E ++ LE + Y A + K E + ++ T L KL +
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
|
Length = 880 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 1214 QWHYIIIDEGHRI--KNASCKLNADLKHYQSSHRLLLTGTP 1252
Q IIIDE H K K+ L+ ++ + L LT TP
Sbjct: 61 QALVIIIDEAHHSSAKTKYRKI---LEKFKPAFLLGLTATP 98
|
Length = 100 |
| >gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 899 RRIKQLEKFEQKMKEER-QKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKE 957
R +L +E++M++ Q+ I+ R+KE E EA ++R + K +R K KE
Sbjct: 22 RPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAA-----KEEKE 76
Query: 958 -FHKRKERIHREKIDRIQ-REKIN 979
+ K ++H +K++R++ REK N
Sbjct: 77 RYEKMAAKMHAKKVERLKRREKRN 100
|
Members of this family are coiled-coil proteins that are involved in pre-rRNA processing. Length = 105 |
| >gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 4e-04
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 461 PFKEQQLKQLRAQCLVF--LAFRNGLVPKKLHLEI 493
PF QL+ LRAQ L + L RN VP +L I
Sbjct: 2 PFTPAQLELLRAQILAYKYLLARNQPVPPELLQAI 36
|
QLQ is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions. Length = 36 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-04
Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 55/280 (19%)
Query: 837 KLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHR 896
+L+E V +++ K + I+L + F ++ + RL ++
Sbjct: 277 ELEEKVKELKELKEKAEEYIKLSE-------------FYEEYLDELREIEKRLSRLEEEI 323
Query: 897 HG--RRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIK---------R 945
+G RIK+LE+ KEER + ++++ KE +E +ER + + K +
Sbjct: 324 NGIEERIKELEE-----KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLK 378
Query: 946 ERWRG-----VNKYVKEFHKRKERIHREKIDRIQREKINL-LKINDVEGYLRMVQDAKS- 998
+R G + K ++E K KE I E+I +I L +I +++ + ++ AK
Sbjct: 379 KRLTGLTPEKLEKELEELEKAKEEI-EEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
Query: 999 -----------DRVNKL------LKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSV 1041
R L LK EK L+++ K ++ + E + + +
Sbjct: 438 CPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK 497
Query: 1042 VEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSE 1081
+++ ++ E E K+ LE EK +KE + +
Sbjct: 498 LKELAEQLK-ELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536
|
Length = 880 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-04
Identities = 41/229 (17%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 806 IMDMQKRKLLVEQ---NWILKQQKTKQRMSTC---FNKLKESVSSSEDISAKTKSVIELK 859
+ + ++R +E+ + ++++ +Q + +L+E + E+ + + +E
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861
Query: 860 KLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRI 919
K +L L+ L D LK ++ + ++L + E ++ E +++
Sbjct: 862 KEELEELEAEKEE--LED----------ELKELEEEKEELE-EELRELESELAELKEEI- 907
Query: 920 RERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKIN 979
E+ +E E+EA ERL+ E + E + + I R + + +N
Sbjct: 908 -EKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET-ELEREIERLEEEIEALGPVN 965
Query: 980 LLKINDVEGYLRMVQDAKSDR------VNKLLKETEKYLQKLGSKLQEA 1022
L I + E ++ KS R KLL+ E+ ++ + +E
Sbjct: 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014
|
Length = 1163 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 7e-04
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 894 KHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERL------DEVFKI-KRE 946
+ R R + +++++E ++R E + E E E E + DE KRE
Sbjct: 63 RKRKEERREGRAVLQEQIEEREKRRQEEYE-ERLQEREQMDEIIERIQEEDEAEAQEKRE 121
Query: 947 RWRGVNKYVKEFHK-RKERIHREKIDRIQREKINLLKINDVEGYLRMVQ------DAKSD 999
+ + + + + EF++ R ER EK +RE+ LKI + Y R +A+
Sbjct: 122 KQKKLREEIDEFNEERIERKEEEK----EREREEELKILE---YQREKAEREEEREAERR 174
Query: 1000 RVNKLLKETEKYLQKLGSKLQEAKSMASHFEN 1031
+E E+ + +L ++ +EA+ +
Sbjct: 175 ERK---EEKEREVARLRAQQEEAEDEREELDE 203
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 0.001
Identities = 79/388 (20%), Positives = 116/388 (29%), Gaps = 38/388 (9%)
Query: 1896 LVLPAASD-DIPSPGPDPKTNEQP-QSESLNPSGGESTATDGNVSSIPTAPVPDSVSPSA 1953
PAA D +P P P P+ +E S + P +A PS
Sbjct: 2558 AAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR-PRAPVDDRGDPRGPAPPSP 2616
Query: 1954 VKGQSGTIDP--SSAVAALNSELNTNLATAPPVPQ----PSPQFSSVSMQTKGQSRKTQS 2007
+ + DP S A N T PP + P+P S + + R Q+
Sbjct: 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQA 2676
Query: 2008 GGVT--PRRRGKRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQE 2065
PRRR R +GS P L + +Q + +
Sbjct: 2677 SSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736
Query: 2066 LSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVP 2125
+ P G AT A P + P A + + P+
Sbjct: 2737 AAPAPPAVPAGPATPGGPARPARPPT---------------TAGPPAPAPPAAPAAGPPR 2781
Query: 2126 SMDLGNVASDTKEVLSENSSSKGGVIPILALSNMKAVERVNIQSFEEKACTNASKSKATL 2185
+ VAS ++ S S P L+ A+ + T+A +
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841
Query: 2186 PALDSITEPYTGSTNTEGISNTIHHVPGA-VAARTPSISTSAPAASLSIPPQASVSVP-V 2243
P P S G PG V R PS S +A A+ + PP ++ P V
Sbjct: 2842 P-----PGPPPPSLPLGGSV-----APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891
Query: 2244 KRHGRKTPTTGEAPRRRGKKQGSGPSIP 2271
R + P R + Q P P
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQP 2919
|
Length = 3151 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 0.001
Identities = 38/246 (15%), Positives = 84/246 (34%), Gaps = 23/246 (9%)
Query: 836 NKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRL-KSYKK 894
KL+ + + E + + + K+L+ L Q + + ++ L +
Sbjct: 179 RKLERTEENLERLEDLLEEL--EKQLEKLERQAEKAERYQE-----LKAELRELELALLL 231
Query: 895 HRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKY 954
+ K+LE+ E++ R + E +E E E E L + RE +
Sbjct: 232 AKLKELRKELEELEEE--LSRLEEELEELQEELEEAEKEIEELKSELEELREEL---EEL 286
Query: 955 VKEFHKRKERIHR--EKIDRIQREKINLLK-INDVEGYLRMVQDAKSDRVNKLLKETEKY 1011
+E + KE I +I ++ L + ++E L +++ +L +
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346
Query: 1012 LQ------KLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESN 1065
+ +L +E + S E++E ++ E+ E L+
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFE-ALREELAELEAELAEIRNELEELKRE 405
Query: 1066 EKYYLM 1071
+
Sbjct: 406 IESLEE 411
|
Length = 1163 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.002
Identities = 49/233 (21%), Positives = 73/233 (31%), Gaps = 28/233 (12%)
Query: 1742 SSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVT---PPSKRGRGRPRRADKSPVPVVL 1798
AP P AP P PP+ P + Q+ T P GR R +P
Sbjct: 688 QWAPGTMQPPPRAPT-PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746
Query: 1799 PAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAP 1858
PA + A G++ +A+ PG+ T AP +P A P P
Sbjct: 747 PAAAPGRARPPAAAPGRARPPAAA-PGAPT------PQPPPQAPPAPQQRPRGAPTPQPP 799
Query: 1859 GSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP 1918
++ P G+ + + G K G P +
Sbjct: 800 PQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRG---------------RPSLKKPA 844
Query: 1919 QSESLNPSGGESTATDGNVSSIPTAPV--PDSVSPSAVKGQSGTIDPSSAVAA 1969
E +G + G I APV P + P V Q G++ ++A
Sbjct: 845 ALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQLGSVRAAAASTV 897
|
Length = 991 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.003
Identities = 91/569 (15%), Positives = 135/569 (23%), Gaps = 109/569 (19%)
Query: 1740 VSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSK--EVTPPSKRG--RGRPRRADKS--- 1792
+ +AP PP P PP P L P L E P RG A
Sbjct: 2491 AAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGD 2550
Query: 1793 PVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTA 1852
P P + PA A +S P S + +++ P Q
Sbjct: 2551 PPPPLPPAA-------PPAAPDRSVPPPRPAPRP---SEPAVTSRARRPDAPP--QSARP 2598
Query: 1853 FVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDP 1912
PV P +P+ P P + P P P
Sbjct: 2599 RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658
Query: 1913 ---------KTNEQPQSESLNPSGGESTATDGNVSSI-------PTAPVPDSVSPSAVKG 1956
+ + S P A V S+ P P P+ + V
Sbjct: 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718
Query: 1957 QSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRRG 2016
P++A A + A P P P + P R
Sbjct: 2719 TPLPPGPAAARQASPA------LPAAPAPPAVPAGPATP--------------GGPARPA 2758
Query: 2017 KRQALGSPPISDVSAGPESKSNLQSENNSGGLRLSKSVSMGKQDALSQELSNKIQVQPCG 2076
+ PP A P + G L++ V
Sbjct: 2759 RPPTTAGPPAPAPPAAPAA---------------------GPPRRLTRP-----AVASLS 2792
Query: 2077 VATSADVAGPDQKPAEQSVRVVQSNQPINLPATHDSSSQPSGSTPAQVPSMDLGNVASDT 2136
+ + + D +V + P PA + P ++
Sbjct: 2793 ESRESLPSPWDPADPPAAVLAPAAALP---PAASPAGPLPPPTSAQPTAP-------PPP 2842
Query: 2137 KEVLSENSSSKGGVIP----------ILALSNMKAVERVNIQSFEEKACTNASKSKATLP 2186
+ G V P + A R ++ A + +++S A P
Sbjct: 2843 PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902
Query: 2187 ALDSITEPYTGSTNTEGISNTIHHVPG--AVAARTPSISTS--APAASLSIPPQASVSVP 2242
D P P P AP + + S +VP
Sbjct: 2903 --DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 2243 VKRHGRKTPTTGEAPRRRGKKQGSGPSIP 2271
G P PR R + PS
Sbjct: 2961 QPWLGALVPGRVAVPRFRVPQ--PAPSRE 2987
|
Length = 3151 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.003
Identities = 38/194 (19%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 889 LKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRER- 947
K + +K++ K + EE + ++ E ++ +EA +E L E+ K++ +
Sbjct: 164 FGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE 223
Query: 948 ----------WRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAK 997
+ + + E + KER+ K ++ E + L + E LR ++
Sbjct: 224 EQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLL 283
Query: 998 SDRVNKL--LKETEKYLQKLGSKLQEAKSMASHFENEMDETQTV-SVVEKYEPAVENEDE 1054
+ K+ L+E E+ +++L +L+ +++ E +++ +++ +EK E +E + E
Sbjct: 284 EELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLE-KLE 342
Query: 1055 SDQAKHYLESNEKY 1068
S+ + E NE
Sbjct: 343 SELEELAEEKNELA 356
|
Length = 908 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.003
Identities = 35/216 (16%), Positives = 53/216 (24%), Gaps = 23/216 (10%)
Query: 1776 TPPSKRGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGS 1835
P G P S P P+ A + +A+A S + +
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 1836 AQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIG 1895
+H P VP A + P
Sbjct: 650 PEH---------HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA--- 697
Query: 1896 LVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDS-VSPSAV 1954
PA P+ P + P ++ + G S + +P P PD P+
Sbjct: 698 ---PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754
Query: 1955 KGQSGTIDPSSAVAALNSELNTNLATAPPVPQPSPQ 1990
Q + AA A PP P +
Sbjct: 755 PAQPPPPPAPAPAAA-------PAAAPPPSPPSEEE 783
|
Length = 824 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.004
Identities = 36/247 (14%), Positives = 62/247 (25%), Gaps = 24/247 (9%)
Query: 1719 AESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPP 1778
+S P + ++A A + P P PP + D + P
Sbjct: 391 VGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVP 450
Query: 1779 SK---RGRGRPRRADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGS 1835
+K R R ++ P A + +A P + + +
Sbjct: 451 AKANARASADSRCDERDAQPPADSGS-------ASAPASDAPPDAAFEPAPRAAAPSAAT 503
Query: 1836 AQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRR----------IQSGEQ 1885
V AP++ P A + A P TP R +G +
Sbjct: 504 PAAVPDARAPAAASRED-APAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMR 562
Query: 1886 VPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPV 1945
V RG + AA + + P +T +
Sbjct: 563 VSSDRGARAA---AAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQA 619
Query: 1946 PDSVSPS 1952
+S
Sbjct: 620 AESRGAP 626
|
Length = 830 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.004
Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 893 KKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVN 952
KK ++ ++ +K E+ K E K + R+ E + E + R++EV K+ E +
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE--EARIEEVMKLYEEEKKMKA 1609
Query: 953 KYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETE--- 1009
+ K+ + K + K +++K+ LK + E + + K++ NK+ E
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 1010 -----KYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLES 1064
K ++ ++ K A + E +E + ++K E +E +A+ ++
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE-----AEEKKKAEELKKA 1724
Query: 1065 NEKYYLMAHSIKESVSEQ 1082
E+ + A K+ E
Sbjct: 1725 EEENKIKAEEAKKEAEED 1742
|
Length = 2084 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2693 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.96 | |
| PTZ00110 | 545 | helicase; Provisional | 99.95 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.94 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.94 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.94 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.94 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.93 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.93 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.93 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.93 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.92 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.92 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.91 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.9 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.89 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.88 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.88 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.88 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.88 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.87 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.86 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.85 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.85 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.84 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.84 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.84 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.84 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.82 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.81 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.81 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.8 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.79 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.79 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.79 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.79 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.78 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.78 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.77 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.77 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.76 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.75 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.75 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.74 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.74 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.74 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.73 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.73 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.73 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.72 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.72 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.72 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.7 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.7 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.69 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.67 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.66 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.66 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.66 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.65 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.63 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.63 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.63 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.63 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.62 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.62 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.61 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.59 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.59 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.58 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.57 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.55 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.55 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.54 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.51 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.51 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.51 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.5 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.47 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.47 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.45 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.45 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.45 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.44 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.44 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.42 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.4 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.4 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.36 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.34 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.31 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.31 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.3 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.29 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.23 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.19 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.19 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.12 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.11 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.03 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.0 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.99 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.94 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.94 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.94 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.92 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.89 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.84 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.83 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.83 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.78 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.74 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.7 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.69 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.6 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.58 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.56 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.53 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.51 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 98.49 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 98.47 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.42 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.4 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.32 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.26 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.22 | |
| PF14619 | 74 | SnAC: Snf2-ATP coupling, chromatin remodelling com | 98.2 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 98.18 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.17 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.14 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 98.12 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 97.98 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.98 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.89 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.89 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.85 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.85 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.61 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.58 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 97.56 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.49 | |
| PF07529 | 73 | HSA: HSA; InterPro: IPR006562 This domain of unkno | 97.34 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.27 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.2 | |
| smart00573 | 73 | HSA domain in helicases and associated with SANT d | 97.09 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.97 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.95 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 96.55 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 96.38 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.33 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.29 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.29 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 96.2 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.19 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 95.93 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.72 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.65 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 95.4 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.37 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.33 | |
| KOG0442 | 892 | consensus Structure-specific endonuclease ERCC1-XP | 95.31 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.31 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.17 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 94.42 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 94.4 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 94.01 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.16 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 92.96 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 92.95 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 92.89 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 92.83 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.81 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 92.66 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 92.65 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.52 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.32 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 92.19 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 91.75 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 91.49 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.44 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 91.4 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 91.25 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 91.25 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 91.13 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 90.85 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 90.83 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 90.69 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 90.52 | |
| PRK08181 | 269 | transposase; Validated | 90.4 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 90.16 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 89.81 | |
| PRK06526 | 254 | transposase; Provisional | 89.76 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 89.39 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 88.58 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 88.4 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 88.29 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 87.78 | |
| PRK08116 | 268 | hypothetical protein; Validated | 87.55 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 87.49 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 87.32 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 87.1 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 86.98 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 86.93 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 86.88 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 86.83 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 86.81 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 86.66 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 86.63 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 86.51 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 86.42 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 86.17 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 86.11 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 86.03 | |
| PF13173 | 128 | AAA_14: AAA domain | 85.98 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 85.95 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 85.87 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 85.29 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 85.27 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 84.92 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 84.79 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 84.73 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 84.62 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 84.61 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 84.24 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 84.23 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 84.05 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 84.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 83.99 | |
| PRK08727 | 233 | hypothetical protein; Validated | 83.94 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 83.87 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 83.73 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 83.67 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.64 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 83.59 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 83.56 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 83.29 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 83.1 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 82.99 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 82.93 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 82.8 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 82.21 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 82.2 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 82.18 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 81.95 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 81.83 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 81.27 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 81.24 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 81.14 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 81.14 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 80.95 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 80.87 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 80.73 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 80.56 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 80.31 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 80.09 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-151 Score=1420.08 Aligned_cols=857 Identities=47% Similarity=0.769 Sum_probs=750.3
Q ss_pred chhHHHHH--HHHHHHHHHHHHHHhhhccCCCcChhhHhhHHHHHHhccCcHHHHHHHHHHHHHhhcccccch-hhhhhh
Q 000047 816 VEQNWILK--QQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDM-DRLKSY 892 (2693)
Q Consensus 816 ~~~~~il~--~~k~kqrI~~rl~eLke~~s~~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~vl~~~~~~~~~~~-~~~~~~ 892 (2693)
++++|++. +..+..+|..+++++...+....+ ..|++|++|+++|+|+.+|++||..++.++....+.+. ...+.|
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~~-~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~ 206 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLMG-ELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF 206 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcchH-HHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence 44444444 334566777777777776665433 57999999999999999999999999998665433221 223455
Q ss_pred hhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHH
Q 000047 893 KKHR--HGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI 970 (2693)
Q Consensus 893 k~~~--~~r~~k~~e~~e~k~k~e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~ 970 (2693)
++.+ ..+.++.+|+||++++.|++++.|.++.+|+..++.|.+++.++++..+.+..+++++++.||.+.||++++++
T Consensus 207 ~R~~~q~~~~~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~ 286 (1157)
T KOG0386|consen 207 KRGKRQTLSEARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRI 286 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5542 24567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhcccccccc
Q 000047 971 DRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050 (2693)
Q Consensus 971 er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~~~k~~~~~~e~e~de~~~~sv~E~~e~a~e 1050 (2693)
+|++|+|+.+||.+|+|+|++|+|++|++||++||+||++|+++|+..|..++....+.. .+.+...+.... .
T Consensus 287 ~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~~~~~---~~~d~~~i~~~a----k 359 (1157)
T KOG0386|consen 287 DRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSENPDAN---SASDISGISGSA----K 359 (1157)
T ss_pred HHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhccccccc---hhhhhhhhhhhh----c
Confidence 999999999999999999999999999999999999999999999999998875211111 111111111111 1
Q ss_pred cccchhHHhHHHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHH
Q 000047 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI 1130 (2693)
Q Consensus 1051 ~ede~~~~k~~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALI 1130 (2693)
++++ +..+...+||.++|.|+|.+.+||.++.||+|++||+.||+||++||+|++|||||||||||||||+|++|
T Consensus 360 --~~~~---d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi 434 (1157)
T KOG0386|consen 360 --ADVD---DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI 434 (1157)
T ss_pred --chhh---hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH
Confidence 1111 14567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc
Q 000047 1131 CYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210 (2693)
Q Consensus 1131 a~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L 1210 (2693)
+||++.+...||+|||||+++|.||..||.+|+|++..+.|.|++..|..+.. .+..++|+|++|||+++++ |+..|
T Consensus 435 tYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~-qir~gKFnVLlTtyEyiik--dk~lL 511 (1157)
T KOG0386|consen 435 TYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTK-QQRHGKFNVLLTTYEYIIK--DKALL 511 (1157)
T ss_pred HHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHH-HHhcccceeeeeeHHHhcC--CHHHH
Confidence 99999999999999999999999999999999999999999999999987754 5667999999999999999 88999
Q ss_pred cccCccEEEEccccccccccchHHHHHH-hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCC
Q 000047 1211 SKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESN 1289 (2693)
Q Consensus 1211 ~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~ 1289 (2693)
.+++|.||||||+|||||+.|++...|. .|.+.+||||||||+||++.|||+|||||.|.||+++..|.+||+.||...
T Consensus 512 sKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFant 591 (1157)
T KOG0386|consen 512 SKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANT 591 (1157)
T ss_pred hccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhc
Confidence 9999999999999999999999999998 789999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-----CCC
Q 000047 1290 GDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-----GNS 1364 (2693)
Q Consensus 1290 g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-----~~s 1364 (2693)
| .+.++++++.+++|+|||+|||||+|||+|++|+.+||+|++.+++|.||++|+.+|+++....... +..
T Consensus 592 G----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~ 667 (1157)
T KOG0386|consen 592 G----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKK 667 (1157)
T ss_pred C----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccc
Confidence 8 3478899999999999999999999999999999999999999999999999999999998654333 445
Q ss_pred CCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC-ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH
Q 000047 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443 (2693)
Q Consensus 1365 k~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l-~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILe 1443 (2693)
..+.++|.+|+||+||||||+|....+.+. .++. ..+++.||||++|+++|++|+++|||||+|||||.++++|+
T Consensus 668 g~k~L~N~imqLRKiCNHP~lf~~ve~~~~----~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimE 743 (1157)
T KOG0386|consen 668 GYKPLFNTIMQLRKLCNHPYLFANVENSYT----LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILE 743 (1157)
T ss_pred cchhhhhHhHHHHHhcCCchhhhhhccccc----cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHH
Confidence 567899999999999999999965433332 3333 48999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1444 d~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
+||..++|+|+||||+|+.++|..+++.||.++++||+||+||+|||+|||||.||+||+||++|||+++.||.+|||||
T Consensus 744 dyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 744 DYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred HHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCcccCCCCHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHH
Q 000047 1524 GQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLA 1603 (2693)
Q Consensus 1524 GQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~fD~~ss~eE~~elLe~LLee~~~eE~~evlDDeeLndLLa 1603 (2693)
||+++|+|+||++.+++||+|++++.+|++++.+||++|.||++++.++++++|+.+++....++..++.+++.||++|+
T Consensus 824 gq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~la 903 (1157)
T KOG0386|consen 824 GQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLA 903 (1157)
T ss_pred hchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888777789999999999999
Q ss_pred hChhHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhHHHHH-HHHhhccCCCCCCCCCCcccccccc
Q 000047 1604 RSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL-YEAMKIYDAPKTGVSPNVGVKRKGE 1682 (2693)
Q Consensus 1604 RseeEle~Fe~~D~er~eee~~~w~~~~~g~g~d~~~l~~~p~rl~~~~El~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1682 (2693)
|+++|+++|++||.+++.++-.. +.+.|++++.|++++ |.... +.++..
T Consensus 904 rseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~i~~~~~-------------~~~~~~- 953 (1157)
T KOG0386|consen 904 RSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPADIYKRDQ-------------GVERLS- 953 (1157)
T ss_pred cchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHHHHhcch-------------hhhhhh-
Confidence 99999999999999987644221 114689999999854 43211 101111
Q ss_pred ccccccccccCCCccccccccccccCCHHHHHHHhhccCCCChhh
Q 000047 1683 HLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKL 1727 (2693)
Q Consensus 1683 ~~~~~~~~~~GRG~r~rk~~~Y~d~~te~q~lk~~~~~~~d~~~~ 1727 (2693)
.+.......|||.|+|+.++|.|.|||+||++.++.+..+..+.
T Consensus 954 -~~~~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~~ 997 (1157)
T KOG0386|consen 954 -EEEEEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSEE 997 (1157)
T ss_pred -hhhhhhccccccccccceeecccccchhhhhhhccccccccchh
Confidence 11112223799999999999999999999999998876555443
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-108 Score=1011.77 Aligned_cols=511 Identities=47% Similarity=0.787 Sum_probs=452.9
Q ss_pred ccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1076 KESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1076 kEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+....+|.++.++.||+||++|++||+++|.++.|||||||||||||+|+|+++.||....+..||||||||.+++.||
T Consensus 153 ~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW 232 (971)
T KOG0385|consen 153 QNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNW 232 (971)
T ss_pred hccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHH
Confidence 33344589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHH
Q 000047 1156 ESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNA 1235 (2693)
Q Consensus 1156 ~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsr 1235 (2693)
..||.+|+|++.+++|+|+..+|..+.+..+..+.|+||||||+.+++ ++..|..+.|.|+||||||||||..|++++
T Consensus 233 ~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~--dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 233 MNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIK--DKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHh--hHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 999999999999999999999999988887888899999999999999 678999999999999999999999999999
Q ss_pred HHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1236 DLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1236 aLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
.|+.|.+.+||||||||+||||.|||+|||||.|.+|++.+.|..||..... +.+...+.+||.+|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~--------------~~~~e~v~~Lh~vL 376 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC--------------EGDQELVSRLHKVL 376 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc--------------ccCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999975311 11223688999999
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHH-hhccC---CCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN-LGSIG---NSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~-l~si~---~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
+||+|||+|.+|+..||+|.|.+++|.|+..|+..|+.+... +.... ......++|++|+||+||||||||...+.
T Consensus 377 ~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 377 RPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred hHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 999999999999999999999999999999999999987543 32222 22346799999999999999999976221
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
-.+......++..||||.+|+++|++|++.||||||||||+.++|||++|+.+++|.|+||||+|+.++|...|+.
T Consensus 457 ----g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 457 ----GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred ----CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 1233345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
||.+++..|||||||+|||+||||.+||+||+||+||||++++||++|||||||+|.|+|||||+++||||+|++|+..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCcccCCCCHHHHHHHHHHHHHHHhhh---ccCCCCCHHHHHHHHHhChh
Q 000047 1552 LGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE---EAAPVLDDDALNDLLARSES 1607 (2693)
Q Consensus 1552 l~Li~kVIqaG~fD~~ss~eE~~elLe~LLee~~~e---E~~evlDDeeLndLLaRsee 1607 (2693)
+.|.+.||+.|.....-+.......+..+++..... -......+ +|..+|.+.+.
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEE 670 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhh
Confidence 999999999995443333223333344454433221 11122233 88888888664
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-98 Score=930.01 Aligned_cols=522 Identities=42% Similarity=0.729 Sum_probs=443.0
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
..|..| .|.||+||+.||.||+.||++++|||||||||||||||+|+|++||...++++||+|||||++++.||..||+
T Consensus 607 pvPsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 445544 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1161 FWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1161 KwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+|||+++++.|+|...+|+...+.|...+-||||||+|..+.. |...|...+|.|+||||||+|||+.+++|++|..|
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~q--d~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnf 763 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQ--DLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNF 763 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHh--HHHHHHhhccceeehhhhhhhcchhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999988 55689999999999999999999999999999999
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
++.+||||||||+||++.|||+|++||+|.+|.+.+.|..||..|+......+ .+.....+.|||++|+||+|
T Consensus 764 nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs-------qeyn~klV~RLHkVlrPfiL 836 (1958)
T KOG0391|consen 764 NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS-------QEYNHKLVIRLHKVLRPFIL 836 (1958)
T ss_pred chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc-------hhhchHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999987543322 22334578899999999999
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh---ccCCCCCcchhHHHHHHHHhhCCccccchhh-------
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG---SIGNSKGRSVHNSVMELRNICNHPYLSQLHA------- 1390 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~---si~~sk~rslln~LmqLRKICnHPyL~~~~~------- 1390 (2693)
||+|.||+++||.|.|++++|.|+..|+.||+.+...-. .+...+..+++|++|+||++||||.||...-
T Consensus 837 RRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~ 916 (1958)
T KOG0391|consen 837 RRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVA 916 (1958)
T ss_pred HHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCccccc
Confidence 999999999999999999999999999999998854332 2333455678999999999999997642100
Q ss_pred --------------------------------------------------------------------------------
Q 000047 1391 -------------------------------------------------------------------------------- 1390 (2693)
Q Consensus 1391 -------------------------------------------------------------------------------- 1390 (2693)
T Consensus 917 e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa 996 (1958)
T KOG0391|consen 917 EPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAA 996 (1958)
T ss_pred CceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchh
Confidence
Q ss_pred -------hh--------------------------------hh-----------------------------cc------
Q 000047 1391 -------EE--------------------------------VD-----------------------------TL------ 1396 (2693)
Q Consensus 1391 -------EE--------------------------------id-----------------------------~l------ 1396 (2693)
++ .+ .+
T Consensus 997 ~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p 1076 (1958)
T KOG0391|consen 997 SATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGP 1076 (1958)
T ss_pred cccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCC
Confidence 00 00 00
Q ss_pred ----C--------------------------------------CCCCCC-------------------------------
Q 000047 1397 ----I--------------------------------------PKHYLP------------------------------- 1403 (2693)
Q Consensus 1397 ----i--------------------------------------~~~~l~------------------------------- 1403 (2693)
+ +..+..
T Consensus 1077 ~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~ 1156 (1958)
T KOG0391|consen 1077 VVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLR 1156 (1958)
T ss_pred cceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhh
Confidence 0 000000
Q ss_pred --------------------------------------------------------------------------------
Q 000047 1404 -------------------------------------------------------------------------------- 1403 (2693)
Q Consensus 1404 -------------------------------------------------------------------------------- 1403 (2693)
T Consensus 1157 ~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~ 1236 (1958)
T KOG0391|consen 1157 ICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYF 1236 (1958)
T ss_pred hhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhcccc
Confidence
Q ss_pred -----------------hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Q 000047 1404 -----------------PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1404 -----------------~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq 1466 (2693)
-+...|||++.|.-+|.+|+..|||||||+||+.|+|+|+.||.++||-|+||||+++.++|+
T Consensus 1237 ~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQ 1316 (1958)
T KOG0391|consen 1237 QQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQ 1316 (1958)
T ss_pred chhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHH
Confidence 001246899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
.++++||. |..+||||+||+.||+||||+.||||||||.||||.++.||++|||||||+++|+|||||.+.||||+|+.
T Consensus 1317 aLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLk 1395 (1958)
T KOG0391|consen 1317 ALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILK 1395 (1958)
T ss_pred HHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHh
Confidence 99999976 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCcccCCC-CHHHHHHHHHHHHHHH-h----hhccCCCCCH-HHHHHHHHhChhHHHHHH
Q 000047 1547 SAEHKLGVANQSITAGFFDNNT-SAEDRREYLESLLREC-K----KEEAAPVLDD-DALNDLLARSESEIDVFE 1613 (2693)
Q Consensus 1547 raekKl~Li~kVIqaG~fD~~s-s~eE~~elLe~LLee~-~----~eE~~evlDD-eeLndLLaRseeEle~Fe 1613 (2693)
++..|..|.+.+|++|.|.... .....+++++.-+.+. . ..+..-+..+ ..+...|+..++|-++-.
T Consensus 1396 kanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~~ad~~v~~see~~le~alA~aede~dV~A 1469 (1958)
T KOG0391|consen 1396 KANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPAKADEFVVASEEPSLEVALAPAEDEEDVEA 1469 (1958)
T ss_pred hhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCccchhhhhhcCcchHHHHhhhhcchHHHHH
Confidence 9999999999999999775432 2222333333222111 0 0111112222 337788888777765543
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-99 Score=963.99 Aligned_cols=505 Identities=45% Similarity=0.762 Sum_probs=451.1
Q ss_pred ccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1078 SVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1078 ev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
.+..||.++.|.+||+||++||+||+.+|.++.|||||||||||||||+|+||.||+......||||||||.+++.+|.+
T Consensus 358 Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ 437 (1373)
T KOG0384|consen 358 KLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWER 437 (1373)
T ss_pred HhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcC------CccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC 1231 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~------kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS 1231 (2693)
||..|+ .+++++|+|+...|.-+........ +|+++||||+++.+ |+..|..++|.+++||||||+||..|
T Consensus 438 ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk--Dk~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 438 EFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK--DKAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc--cHhhhccCCcceeeecHHhhcCchHH
Confidence 999999 9999999999988876554443322 59999999999998 88999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
+++..|..|...+||||||||+||++.|||+|||||+|+.|.++.+|...|.. +....+..|
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc------------------hhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887732 223357889
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHH-HHhhccCC---CCCcchhHHHHHHHHhhCCccccc
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE-ENLGSIGN---SKGRSVHNSVMELRNICNHPYLSQ 1387 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Le-e~l~si~~---sk~rslln~LmqLRKICnHPyL~~ 1387 (2693)
|.+|+||||||+|+||++.||+|.|+++.++||..|+.+|+.|. +++..+.. .....++|++|+|++|||||||+.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~ 656 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIK 656 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccC
Confidence 99999999999999999999999999999999999999999875 44544332 223589999999999999999999
Q ss_pred hhhhhhhccCCC----CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHH
Q 000047 1388 LHAEEVDTLIPK----HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463 (2693)
Q Consensus 1388 ~~~EEid~li~~----~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~e 1463 (2693)
..++.+...+.. ..+..++..|||+.+|++||.+|++.||||||||||+.|||||++||..++|.|.||||++..+
T Consensus 657 gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrge 736 (1373)
T KOG0384|consen 657 GAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGE 736 (1373)
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchH
Confidence 877765544432 3566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
-|+.+|+.||+++++.|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.||||||.+|+||.
T Consensus 737 lRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 737 LRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred HHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCcccC------CCCHHHHHHHHHHHHHHHh----hh-c-cCCCCCHHHHHHHHHhChh
Q 000047 1544 VRASAEHKLGVANQSITAGFFDN------NTSAEDRREYLESLLRECK----KE-E-AAPVLDDDALNDLLARSES 1607 (2693)
Q Consensus 1544 IleraekKl~Li~kVIqaG~fD~------~ss~eE~~elLe~LLee~~----~e-E-~~evlDDeeLndLLaRsee 1607 (2693)
|++++..|+.|++.||+.+.... ..+.+| |+.||+-.+ ++ + ....++..+|++||.|.+.
T Consensus 817 ilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E----LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 817 ILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEE----LSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHH----HHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 99999999999999999875422 223344 445554321 22 2 2235666789999998654
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-95 Score=876.97 Aligned_cols=592 Identities=41% Similarity=0.683 Sum_probs=480.4
Q ss_pred HHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000047 947 RWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMA 1026 (2693)
Q Consensus 947 ~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~~~k~~~ 1026 (2693)
+.++.-+.|.-|+++.||.++....+.+||-+++.|-+.|+.--+. ...+|.+||.||+-|-.+++++....-..+
T Consensus 404 rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskR----QarklnfLltQTELySHFi~rK~d~n~se~ 479 (1185)
T KOG0388|consen 404 RAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKR----QARKLNFLLTQTELYSHFIGRKNDCNLSEA 479 (1185)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhhcccCCcccc
Confidence 3456677788899999999999888899998888877666544332 356899999999999999998754321111
Q ss_pred hhcccccccccccchhcccccccccccchhH------------HhHHHHhhh-HHHHh-----------------hhccc
Q 000047 1027 SHFENEMDETQTVSVVEKYEPAVENEDESDQ------------AKHYLESNE-KYYLM-----------------AHSIK 1076 (2693)
Q Consensus 1027 ~~~e~e~de~~~~sv~E~~e~a~e~ede~~~------------~k~~~e~~~-~yy~l-----------------ah~ik 1076 (2693)
-..+ ....+..|. ....+.+++..+ +++.-.... .|-.. ...+.
T Consensus 480 lp~~-----~ne~sa~e~-n~~~d~eea~l~~~~lraAq~Av~a~~~t~afd~e~~~~~ntse~e~~e~e~n~q~~t~i~ 553 (1185)
T KOG0388|consen 480 LPAE-----RNEISAGEP-NGMKDYEEAMLQKLRLRAAQDAVSAKQITDAFDTEFGAERNTSEFEGPENEGNFQGPTNID 553 (1185)
T ss_pred CCcc-----cccccccCc-ccCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhccccccccCccccccccCCcccc
Confidence 0000 001111110 000000000000 000000000 01000 01111
Q ss_pred -cccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1077 -ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1077 -Eev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
....+||.+|. ++|++||++||+||+.+|.++.|||||||||||||+|+|+++++|.+..+.+||||||+|.++|.||
T Consensus 554 ~t~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NW 632 (1185)
T KOG0388|consen 554 TTRTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNW 632 (1185)
T ss_pred ceeeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHH
Confidence 22347888876 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHhhh------hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1156 ESEINFWAPRIHKIVYCGPPEERRRLFKEKI------VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1156 ~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i------~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
..||.+|+|.++++.|.|+..+|+.+.+-+. ....|+||||||+.+.. |...|.+++|.|+|+|||+-||..
T Consensus 633 aqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--Deky~qkvKWQYMILDEAQAIKSS 710 (1185)
T KOG0388|consen 633 AQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DEKYLQKVKWQYMILDEAQAIKSS 710 (1185)
T ss_pred HHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hHHHHHhhhhhheehhHHHHhhhh
Confidence 9999999999999999999999976654222 35689999999999987 667899999999999999999999
Q ss_pred cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHH
Q 000047 1230 SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIIN 1309 (2693)
Q Consensus 1230 sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~ 1309 (2693)
.|.+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|.+.++|.+||.+-|+....... .+ +...+.
T Consensus 711 sS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~---tl----neqqL~ 783 (1185)
T KOG0388|consen 711 SSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT---TL----NEQQLQ 783 (1185)
T ss_pred hhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC---Cc----CHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776543221 11 223478
Q ss_pred HHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1310 RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
|||.+|+||||||.|++|..+|-.|++..+.|.++-.|+.+|+.+...+... ...+++|+||++||||.||...
T Consensus 784 RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~------E~~~~vmQlrKVCNHPdLFer~ 857 (1185)
T KOG0388|consen 784 RLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSM------EMENLVMQLRKVCNHPDLFERL 857 (1185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHH------HHHHHHHHHHHhcCChHHHhhc
Confidence 9999999999999999999999999999999999999999999998766532 2346999999999999875321
Q ss_pred hh---------------------------------h-h-----------------hc-----------------------
Q 000047 1390 AE---------------------------------E-V-----------------DT----------------------- 1395 (2693)
Q Consensus 1390 ~E---------------------------------E-i-----------------d~----------------------- 1395 (2693)
+. + + ..
T Consensus 858 e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~ 937 (1185)
T KOG0388|consen 858 EPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGY 937 (1185)
T ss_pred CCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCc
Confidence 00 0 0 00
Q ss_pred ---------------cC-CC-----------------------CC-----------------------------------
Q 000047 1396 ---------------LI-PK-----------------------HY----------------------------------- 1401 (2693)
Q Consensus 1396 ---------------li-~~-----------------------~~----------------------------------- 1401 (2693)
++ +. .|
T Consensus 938 ~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~ 1017 (1185)
T KOG0388|consen 938 VFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYV 1017 (1185)
T ss_pred ccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceec
Confidence 00 00 00
Q ss_pred --CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1402 --LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1402 --l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
...++..|||+..|+++|.+|++.|||||+|+||+.|+|+|++||..+||.|+||||+.+..+|..++..|+. +++
T Consensus 1018 Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdi 1095 (1185)
T KOG0388|consen 1018 PPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDI 1095 (1185)
T ss_pred CcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--Cce
Confidence 0012456799999999999999999999999999999999999999999999999999999999999999976 779
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
||||+||+|||+||||++||+|||||++|||..+.||++||||+||+++|+||||++.+||||+|++++.+|-.+...|+
T Consensus 1096 FvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388|consen 1096 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred EEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccC
Q 000047 1560 TAGFFDN 1566 (2693)
Q Consensus 1560 qaG~fD~ 1566 (2693)
.++.|..
T Consensus 1176 ~G~~~qg 1182 (1185)
T KOG0388|consen 1176 HGNIFQG 1182 (1185)
T ss_pred cCCcccC
Confidence 8887654
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-87 Score=887.53 Aligned_cols=509 Identities=46% Similarity=0.795 Sum_probs=445.4
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
+..+|.++. ++|||||++||+||+.++.++.|||||||||||||+|+|+++.++.......+|+|||||.+++.||..|
T Consensus 159 l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 159 LLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred eccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 457898887 7999999999999999999999999999999999999999999998877788999999999999999999
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
|.+|+|.++++.|+|....|..+....+....|+||||||+.+.+ +...|..+.|++|||||||+|||..++++++++
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~--e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIK--EKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHH--HHHHhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 999999999999999998887665555556789999999999988 456788999999999999999999999999999
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~--------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN--------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc--------------chHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999762110 1123577899999999
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh-hccC-CCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL-GSIG-NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l-~si~-~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
++||+|.+|...||++.+.+++|.|++.|+.+|+.+.... ..+. ......+++.+|+||++|+||||+.......
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~--- 458 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP--- 458 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC---
Confidence 9999999999999999999999999999999999875432 1111 1223468899999999999999986432111
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
+......++..++|+.+|+++|.++...|+||||||||+.++++|+++|..+|+.|++|||+++.++|+.+|+.||.++
T Consensus 459 -~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~ 537 (1033)
T PLN03142 459 -PYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPG 537 (1033)
T ss_pred -cccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcccc
Confidence 1112245678899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~ 1556 (2693)
+..+||||||+|||+||||+.||+||+||+||||..++||+||||||||+++|+|||||+.+||||+|++++..|+.++.
T Consensus 538 s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~ 617 (1033)
T PLN03142 538 SEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDA 617 (1033)
T ss_pred CCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcccCC--CCHHHHHHHHHHHHHHHhh---hccCCCCCHHHHHHHHHhChhHHHHH
Q 000047 1557 QSITAGFFDNN--TSAEDRREYLESLLRECKK---EEAAPVLDDDALNDLLARSESEIDVF 1612 (2693)
Q Consensus 1557 kVIqaG~fD~~--ss~eE~~elLe~LLee~~~---eE~~evlDDeeLndLLaRseeEle~F 1612 (2693)
.||+.|.+... .+.++ |..|++.... ......+.+++|+.||+|+++....+
T Consensus 618 ~Vi~~g~~~~~~~~~~~e----L~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~~~ 674 (1033)
T PLN03142 618 LVIQQGRLAEQKTVNKDE----LLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 674 (1033)
T ss_pred HHHhcCcccccccCCHHH----HHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHHHH
Confidence 99998876543 33333 3344442211 22345689999999999998776533
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-88 Score=838.60 Aligned_cols=476 Identities=44% Similarity=0.702 Sum_probs=412.7
Q ss_pred cccCCCccC-CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1079 VSEQPTCLQ-GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1079 v~eqP~~L~-ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
+.+||..+. +.+|++||+.||+||.-+|+++.+||||||||||||||+|+|++||++.+. .||+|||||.+++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 556888875 689999999999999999999999999999999999999999999988765 899999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhc--CCccEEEEcHHHHHhc-cCCCcccccCccEEEEccccccccccchHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVH--QKFNVLLTTYEYLMNK-HDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~--~kfdVVITTYE~Lik~-~Dr~~L~kikWd~VIIDEAHRIKN~sSKls 1234 (2693)
||.+|||.+++..|+|+..+|+.+.. .+.. .+|+|+||||..+... .|+..|...+|+|+|+||||.+||..|.+|
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~-~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRE-RIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHH-HHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHH
Confidence 99999999999999999999987743 3332 3899999999988643 367789999999999999999999999999
Q ss_pred HHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCC-hhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS-SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S-~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+-|..+++.+||||||||+||||.|||+||.|++|.+|.+ .+++...|..--.. +.......+.++ .|.|-..
T Consensus 545 ~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~--d~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 545 KHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS--DGDIENALLSQE----RISRAKT 618 (941)
T ss_pred HHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc--cchhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999976 46677777653222 222233333333 4778889
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc----cCCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS----IGNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s----i~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
++.||+|||+|.+|.++||+|..++.+|+|+..|+.+|..+.+.+.. ........-.+.+|+||++++||.|++..
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 99999999999999999999999999999999999999988766521 11111112256999999999999987532
Q ss_pred hh--hhh----ccC------------------------------------CCCCCChhhhcccHHHHHHHHHHHhhcCCC
Q 000047 1390 AE--EVD----TLI------------------------------------PKHYLPPIVRLCGKLEMLDRLLPKLKATDH 1427 (2693)
Q Consensus 1390 ~E--Eid----~li------------------------------------~~~~l~~Lvr~SgKLelLdeLL~kLkatGh 1427 (2693)
-. .+. .++ ....-...|-.|||+..|..+|++++..|+
T Consensus 699 Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~ 778 (941)
T KOG0389|consen 699 YTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGD 778 (941)
T ss_pred ccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCC
Confidence 11 000 000 001123567889999999999999999999
Q ss_pred eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC
Q 000047 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507 (2693)
Q Consensus 1428 KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp 1507 (2693)
|||||||||.++|||+.+|..++|.|+||||+|...+|+.+|+.||. +.++||||+||+|||.||||+.||+||+||.+
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecC
Confidence 99999999999999999999999999999999999999999999975 56699999999999999999999999999999
Q ss_pred CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCc
Q 000047 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF 1563 (2693)
Q Consensus 1508 WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~ 1563 (2693)
+||..+.||.+||||+||+|+|+|||||+.+||||.|+++++.|+.|...+...+.
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999988887653
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-86 Score=817.08 Aligned_cols=465 Identities=36% Similarity=0.638 Sum_probs=410.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|++||++||+||++||.++.||||+||||||||||+|+|+..|...+...+|.|||||.+++.||..||.+|+|.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 58999999999999999999999999999999999999999999998877779999999999999999999999999999
Q ss_pred EEEcCChHH----------HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH
Q 000047 1169 IVYCGPPEE----------RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1169 Ivy~Gs~~e----------Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
.+|+++... ...+..........+|+||||+.+.. ....+..+.|+|+|+||+|+|||.+++++.+++
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCccHHHHHHH
Confidence 999997652 11111122334567899999999987 445789999999999999999999999999999
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+++.+||+||||||||+|.|||+|++|+.|+.+++...|.+.|..||..++........ ....+.+...|+.+|+||
T Consensus 362 ki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q--v~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 362 KIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ--VQTAYKCAVALRDLISPY 439 (923)
T ss_pred hccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH--HHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999998887654432 334455667899999999
Q ss_pred hhhhhHhHHhh-cCccceeEeeeccccHHHHHHHHHHHHH--hhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1319 VLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1319 LLRRtKkDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~--l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+|||+|.+|.. .||.|.|++++|.|+++|+.+|.++... +..+.+. ....+..+.-||++||||.|+....+....
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng-~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG-KRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC-CccceechHHHHhhcCCcccccCccccccc
Confidence 99999999999 9999999999999999999999987543 2222222 234566788899999999998654321111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~-~rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
..-....+..|||+++|..+|..+...|+|||+|+|...|+|||+.+|. ..||.|+|+||.|+...|+.+|++||+
T Consensus 519 ---~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 519 ---GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ---CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC
Confidence 1111245788999999999999999999999999999999999999999 799999999999999999999999987
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~L 1554 (2693)
+. .++|||++|+|||+||||+.||.||||||+|||..+.||..||+||||+|+|.||||++.+||||+||.++-+|..|
T Consensus 596 ~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~L 674 (923)
T KOG0387|consen 596 DE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFL 674 (923)
T ss_pred CC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 55 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccC
Q 000047 1555 ANQSITAG 1562 (2693)
Q Consensus 1555 i~kVIqaG 1562 (2693)
.++++..-
T Consensus 675 tn~il~~p 682 (923)
T KOG0387|consen 675 TNRILKNP 682 (923)
T ss_pred HHHHhcCH
Confidence 99998654
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-79 Score=776.85 Aligned_cols=465 Identities=38% Similarity=0.662 Sum_probs=402.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+||.||++||+||..|+..+++|||||+||||||+|+|++++.-.... -...|.|||||.+|...|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 6899999999999999999999999999999999999999987533222 1345789999999999999999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
+|.++++.|.|.+..|..+.. ...+.+|+||+|+.+++ |...|.++.|.|+|+||+|-|||..++++++++.+++
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~---q~~~~~iiVtSYDv~Rn--D~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRD---QYKNANIIVTSYDVVRN--DVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRA 1128 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHh---hccccceEEeeHHHHHH--HHHHHHhcccceEEecCcceecchHHHHHHHHHHHhh
Confidence 999999999999999876643 23567999999999998 4568999999999999999999999999999999999
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.|||+|||||+|||+.|||+||+||+|+++++.+.|...|.+|+....+.... .-..+...+.+..||+.+-||+|||
T Consensus 1129 ~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~S--ske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1129 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSS--SKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccc--hhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876654322 2334566778999999999999999
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-----------CCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-----------GNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-----------~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
+|.||.++||+|+.+-++|+|++.|++||+.+....... .......++..+..||+.|+||.|......
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 999999999999999999999999999999987652110 000133577889999999999988643200
Q ss_pred -hhhccCC--CCCCC--hhhhcccHHHHHHHHHHHhh--------------cCCCeEEEEEcchHHHHHHHHHHhh---c
Q 000047 1392 -EVDTLIP--KHYLP--PIVRLCGKLEMLDRLLPKLK--------------ATDHRVLFFSTMTRLLDVMEDYLTF---K 1449 (2693)
Q Consensus 1392 -Eid~li~--~~~l~--~Lvr~SgKLelLdeLL~kLk--------------atGhKVLIFSQft~tLDILed~L~~---r 1449 (2693)
+...... .+... .-+..++|+.+|.++|.++- ..+||+|||||++.++|++++-|-. .
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0000000 00111 22678899999999998863 1479999999999999999998854 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+.|+||||++.+.+|++++++||++ .-+.|+|++|.+||+||||+.||||||++-||||..++||++||||||||+.|
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 57899999999999999999999864 44889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
.|||||+.||+||+|+..++.|+++++.||+.
T Consensus 1446 NVyRlItrGTLEEKVMgLQkFKmnvAntvInq 1477 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKFKMNVANTVINQ 1477 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHHhhHHHHHHHhc
Confidence 99999999999999999999999999999975
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=670.95 Aligned_cols=472 Identities=32% Similarity=0.471 Sum_probs=393.1
Q ss_pred CCcchHHHHHHHHHHHHHhh------cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-----CCCEEEEecCchHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYN------NQLNGILADEMGLGKTVQVIALICYLMETKND-----RGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~------n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-----~gP~LIVVPtSLL~QW~ 1156 (2693)
...|||||++|++||..... +..|||+||+||+|||+|+|+||..+++..+. .+ .|||||.+|+.||+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k-~lVV~P~sLv~nWk 314 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINK-PLVVAPSSLVNNWK 314 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccc-cEEEccHHHHHHHH
Confidence 46899999999999976432 45678999999999999999999999999887 55 49999999999999
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHH----HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERR----RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk----~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s 1230 (2693)
.||.+|.. .+..+.+.|...... .++......-..-|+|.+|+.+.+ ....+....+++||+||+|++||..
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~--~~~~il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASD--YCRKILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHH--HHHHHhcCCCCeEEECCCCCccchh
Confidence 99999986 577777777665411 111111223346788999999986 3346788899999999999999999
Q ss_pred chHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHH
Q 000047 1231 CKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINR 1310 (2693)
Q Consensus 1231 SKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~R 1310 (2693)
++++++|..+.+++||+|||||+||++.|+|++|+|++|+++++...|...|..|+...++.......... ..-+.+
T Consensus 393 s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~---~~rl~e 469 (776)
T KOG0390|consen 393 SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER---EERLQE 469 (776)
T ss_pred hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887665433333222 223888
Q ss_pred HHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhh
Q 000047 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHA 1390 (2693)
Q Consensus 1311 LhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~ 1390 (2693)
|..+...|++||+-..+.+.||.+.++++.|.+++.|..+|+.+.... .........+..+..|.++|+||+|.....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~--~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM--KMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH--HhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 999999999999999999999999999999999999999999997753 111112236777889999999999975221
Q ss_pred hhhh--cc-------CCC--CCCChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1391 EEVD--TL-------IPK--HYLPPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1391 EEid--~l-------i~~--~~l~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.... .. ... .........++|+..|+.+|...++ ...++++.++++.++++++..++++|+.+++|||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 1110 00 000 1111123357899999999865543 3456667778999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.|+..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+.+.||++||+|.||+|+|+||||++.+
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccCcccCC
Q 000047 1539 TVEEQVRASAEHKLGVANQSITAGFFDNN 1567 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqaG~fD~~ 1567 (2693)
|+||+||+++.+|..|-..|++.......
T Consensus 708 tiEEk~~qrq~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 708 TIEEKIYQRQTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred CchHHHHHHHHHhhhhhheEEeccccccc
Confidence 99999999999999999999987644433
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=641.51 Aligned_cols=533 Identities=26% Similarity=0.395 Sum_probs=423.4
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhh---------cCCCeEEEcCCCCChHHHHHHHHHHHHH-hcCCCCCEEEEec
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYN---------NQLNGILADEMGLGKTVQVIALICYLME-TKNDRGPFLVVVP 1148 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~---------n~lnGILADEMGLGKTIQAIALIa~Lle-~k~~~gP~LIVVP 1148 (2693)
....+..|. .+|+|||..||+||+.... .+.|||||+-||||||+|+|+|++.++. .+.....+|||||
T Consensus 658 ~VqV~rslv-~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~P 736 (1567)
T KOG1015|consen 658 LVQVHRSLV-IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCP 736 (1567)
T ss_pred hhhccHhHH-hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcc
Confidence 334455554 6899999999999987532 4779999999999999999999987554 3445567999999
Q ss_pred CchHHHHHHHHHHHCCCCc------EEEE--cCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-------------C
Q 000047 1149 SSVLPGWESEINFWAPRIH------KIVY--CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-------------R 1207 (2693)
Q Consensus 1149 tSLL~QW~eEfeKwaPsLk------VIvy--~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-------------r 1207 (2693)
.+++.||..||.+|.+++. |..+ +-.+..|..++..|. ..-.|+|+-|++++.... .
T Consensus 737 lNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~--~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 737 LNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ--EDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred hHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH--hcCCEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 9999999999999998532 2211 223345555555544 455899999999864221 1
Q ss_pred CcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCccc
Q 000047 1208 PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE 1287 (2693)
Q Consensus 1208 ~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e 1287 (2693)
..|..-..|+|||||||.|||..+.++++|..+.+++||+|||||+||||.|+|.+++|+.|+++++..+|..+|..||.
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 23555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCC----
Q 000047 1288 SNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGN---- 1363 (2693)
Q Consensus 1288 ~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~---- 1363 (2693)
++...+.....+. ....-..-|+.+|..|+-|+-...+...||+|.+++|.+.|++.|..||..+.......+.
T Consensus 895 nGq~~dST~~DVr--~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg 972 (1567)
T KOG1015|consen 895 NGQCADSTMVDVR--VMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEG 972 (1567)
T ss_pred cCccCCCcHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcccc
Confidence 9876654332221 1112234588999999999999999999999999999999999999999998774432222
Q ss_pred --CCCcchhHHHHHHHHhhCCccccchhhhh-----------hhccCC--------------------------------
Q 000047 1364 --SKGRSVHNSVMELRNICNHPYLSQLHAEE-----------VDTLIP-------------------------------- 1398 (2693)
Q Consensus 1364 --sk~rslln~LmqLRKICnHPyL~~~~~EE-----------id~li~-------------------------------- 1398 (2693)
..+..++..+.-|++|++|||........ .+.++.
T Consensus 973 ~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss 1052 (1567)
T KOG1015|consen 973 GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSS 1052 (1567)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccccccc
Confidence 23456888888999999999875432110 000000
Q ss_pred -----------------------C--------------------------------CC-------CChhhhcccHHHHHH
Q 000047 1399 -----------------------K--------------------------------HY-------LPPIVRLCGKLEMLD 1416 (2693)
Q Consensus 1399 -----------------------~--------------------------------~~-------l~~Lvr~SgKLelLd 1416 (2693)
. +| ....+..|+|+.+|.
T Consensus 1053 ~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLl 1132 (1567)
T KOG1015|consen 1053 GSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLL 1132 (1567)
T ss_pred ccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHH
Confidence 0 00 001245789999999
Q ss_pred HHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----------------------cCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----------------------KQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1417 eLL~kLkatGhKVLIFSQft~tLDILed~L~~----------------------rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
+||..+.+-|.|+|||+|....||+|++||.. +|..|.||||++...+|+++.+.||+
T Consensus 1133 eIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1133 EILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999953 46789999999999999999999998
Q ss_pred CCC-CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000047 1475 QDS-PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLG 1553 (2693)
Q Consensus 1475 ~dS-d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~ 1553 (2693)
+.. ..++|||||+||++||||-+|+.|||||-.|||..+.|+|-|++|+||+|+|+|||||+.+|+||+||.|+-.|..
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqs 1292 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQS 1292 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhh
Confidence 654 5689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCcccCCCCHHHHHHHHHHH---HHHHhhhccCCCCCHHHHHHHHHhChhHHHHHHHhh
Q 000047 1554 VANQSITAGFFDNNTSAEDRREYLESL---LRECKKEEAAPVLDDDALNDLLARSESEIDVFESVD 1616 (2693)
Q Consensus 1554 Li~kVIqaG~fD~~ss~eE~~elLe~L---Lee~~~eE~~evlDDeeLndLLaRseeEle~Fe~~D 1616 (2693)
+..+|++........+..+..+++.-- +....+.+...++.|..+.+++...+..+..+.++|
T Consensus 1293 ls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehd 1358 (1567)
T KOG1015|consen 1293 LSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHD 1358 (1567)
T ss_pred hhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhh
Confidence 999999876555555555544443311 100111133456788889999988888777776665
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=657.59 Aligned_cols=476 Identities=43% Similarity=0.684 Sum_probs=407.2
Q ss_pred cccCCC-ccCCCcchHHHHHHHHHHH-HHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCchHHHH
Q 000047 1079 VSEQPT-CLQGGKLREYQMSGLRWLV-SLYNNQLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1079 v~eqP~-~L~ggkLRPYQleGL~WLl-sLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSLL~QW 1155 (2693)
+...|. ......|++||.+|++|+. .++..+.+|||||+||+|||+|+|+++.+++..... .+|+|||||.+++.||
T Consensus 326 ~~~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw 405 (866)
T COG0553 326 LLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNW 405 (866)
T ss_pred hhccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHH
Confidence 334443 3345789999999999999 899999999999999999999999999987766665 5799999999999999
Q ss_pred HHHHHHHCCCCc-EEEEcCChHH---HHHHHHhhhhc---CCccEEEEcHHHHHhc-cCCCcccccCccEEEEccccccc
Q 000047 1156 ESEINFWAPRIH-KIVYCGPPEE---RRRLFKEKIVH---QKFNVLLTTYEYLMNK-HDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1156 ~eEfeKwaPsLk-VIvy~Gs~~e---Rk~l~ke~i~~---~kfdVVITTYE~Lik~-~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.+||.+|+|.++ ++.|+|.... +...+...... ..|++++|||+++.+. .+...+..+.|+++|+||||++|
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999999999 9999998752 12222222211 1389999999999872 14467999999999999999999
Q ss_pred cccchHHHHHHhhcccccccccccCCCCCHHHHHHHhh-hccCCCCC-ChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1228 NASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN-FLLPNIFN-SSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1228 N~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLn-FL~P~iF~-S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
|..+..++++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+...
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~------~~~~~ 559 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP------LEARE 559 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc------hhhHH
Confidence 99999999999999999999999999999999999999 99999999 568999999999877665432 12233
Q ss_pred HHHHHHHHHhhhhhhhhhHhH--HhhcCccceeEeeeccccHHHHHHHHHHHH---Hh----hccCCC---------CCc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASAYQKLLMKRVEE---NL----GSIGNS---------KGR 1367 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkD--VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee---~l----~si~~s---------k~r 1367 (2693)
..+.+|+.+++||++||+|.+ +..+||++.+.++.|.++..|..+|+.+.. .. ...... ...
T Consensus 560 ~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (866)
T COG0553 560 LGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSEL 639 (866)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Confidence 445669999999999999999 899999999999999999999999988765 21 111111 144
Q ss_pred chhHHHHHHHHhhCCccccchh-hhhhhcc--------CCCCCCChhhhcc-cHHHHHHHHH-HHhhcCCC--eEEEEEc
Q 000047 1368 SVHNSVMELRNICNHPYLSQLH-AEEVDTL--------IPKHYLPPIVRLC-GKLEMLDRLL-PKLKATDH--RVLFFST 1434 (2693)
Q Consensus 1368 slln~LmqLRKICnHPyL~~~~-~EEid~l--------i~~~~l~~Lvr~S-gKLelLdeLL-~kLkatGh--KVLIFSQ 1434 (2693)
.+++.++.||++|+||+++... ....+.. ........++..+ +|+..|.++| ..+...++ |||||+|
T Consensus 640 ~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq 719 (866)
T COG0553 640 NILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQ 719 (866)
T ss_pred HHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeC
Confidence 6789999999999999998654 2111110 1111234567788 9999999999 89999999 9999999
Q ss_pred chHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchh
Q 000047 1435 MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDL 1514 (2693)
Q Consensus 1435 ft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~di 1514 (2693)
|+.++++|+++|...++.|+++||+++..+|+.++++|+++ ..++|||++++|||.||||+.|++||+||+||||..+.
T Consensus 720 ~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~ 798 (866)
T COG0553 720 FTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVEL 798 (866)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHH
Confidence 99999999999999999999999999999999999999886 56889999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1515 QAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1515 QAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
||++|+|||||++.|.||+|++.+|+||+|+.++..|..+...++++
T Consensus 799 Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 799 QAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999985
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=571.60 Aligned_cols=463 Identities=32% Similarity=0.486 Sum_probs=372.4
Q ss_pred ccCCCccCCCcchHHHHHHHHHHHHHhh-cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1080 SEQPTCLQGGKLREYQMSGLRWLVSLYN-NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1080 ~eqP~~L~ggkLRPYQleGL~WLlsLy~-n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
.+||..|. ..|.|||++||.|+..... .-.|||||||||.|||||+|+|+.. .....|.|||||.-.+.||.+|
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHH
Confidence 47888887 7899999999999988765 4578999999999999999999865 3455679999999999999999
Q ss_pred HHHHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc---------------CCCcccccCccEEEEcc
Q 000047 1159 INFWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH---------------DRPKLSKIQWHYIIIDE 1222 (2693)
Q Consensus 1159 feKwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~---------------Dr~~L~kikWd~VIIDE 1222 (2693)
|.++.. .+++++|+|...... .+ ...+||||+|||..+-... .+..|..++|..||+||
T Consensus 250 I~~~T~gslkv~~YhG~~R~~n--ik---el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKN--IK---ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHhccCceEEEEEecccccCC--HH---HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 999974 688999999764432 11 2358999999998874322 12357889999999999
Q ss_pred ccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCCh---------------------------
Q 000047 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSS--------------------------- 1275 (2693)
Q Consensus 1223 AHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~--------------------------- 1275 (2693)
||.||+..+...+++..+.+.+||+|||||+||.+.|||+|++||....|.-+
T Consensus 325 AH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 325 AHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred hcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchh
Confidence 99999999999999999999999999999999999999999999977655321
Q ss_pred ----hHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhh--cCccceeEeeeccccHHHHH
Q 000047 1276 ----EDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN--ELPEKIERLVRCEASAYQKL 1349 (2693)
Q Consensus 1276 ----k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVek--eLP~KiE~vV~ceLSa~Qk~ 1349 (2693)
..|..++.+|+...+..... .......|.+|+.+|+||+|-.-.. .||+++..+-.--++.....
T Consensus 405 m~h~~~~n~~mlk~IqkfG~eGpG---------k~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D 475 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFGVEGPG---------KEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKD 475 (791)
T ss_pred hhhhhhhcccccccchhhcccCch---------HHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHH
Confidence 12223334455444433222 2234578899999999999976554 48998887776667777777
Q ss_pred HHHHHHHH----hh-c----cCCCCCcchhHHHHHHHHhhCCccccchhhh---------h-------------h-----
Q 000047 1350 LMKRVEEN----LG-S----IGNSKGRSVHNSVMELRNICNHPYLSQLHAE---------E-------------V----- 1393 (2693)
Q Consensus 1350 LYk~Lee~----l~-s----i~~sk~rslln~LmqLRKICnHPyL~~~~~E---------E-------------i----- 1393 (2693)
+|+.+-.. +. . ....++..++..+.+||++..||||...... + +
T Consensus 476 ~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~Ch 555 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCH 555 (791)
T ss_pred HHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhh
Confidence 77665322 11 1 1123456788889999999999998543110 0 0
Q ss_pred ------------hccCC------------------CC------------------CCChhhhcccHHHHHHHHHHHhhcC
Q 000047 1394 ------------DTLIP------------------KH------------------YLPPIVRLCGKLEMLDRLLPKLKAT 1425 (2693)
Q Consensus 1394 ------------d~li~------------------~~------------------~l~~Lvr~SgKLelLdeLL~kLkat 1425 (2693)
..+.. .+ ..-.-|+.|.|+++|.+-|..+.+.
T Consensus 556 H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r 635 (791)
T KOG1002|consen 556 HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRER 635 (791)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHc
Confidence 00000 00 0001256778999999999888765
Q ss_pred C--CeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE
Q 000047 1426 D--HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503 (2693)
Q Consensus 1426 G--hKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi 1503 (2693)
+ -|.|||+||+.++|+|.-.|.+.|+..+.|.|+|+...|...|+.|. ++.+|.|||+|.+|||..|||+.|..|++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEEEEeccCceEeeechhceeEe
Confidence 5 58899999999999999999999999999999999999999999995 57889999999999999999999999999
Q ss_pred ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1504 yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
+||||||....||++|+|||||.++|+|.|||.++|||++|++.+++|.+|++..|+..
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999753
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=583.54 Aligned_cols=481 Identities=30% Similarity=0.470 Sum_probs=389.1
Q ss_pred hhhccc--cccccCCCccCCCcchHHHHHHHHHHHHHhhc-CCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCC
Q 000047 1071 MAHSIK--ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN-QLNGILADEMGLGKTVQVIALICYLMETK-------NDR 1140 (2693)
Q Consensus 1071 lah~ik--Eev~eqP~~L~ggkLRPYQleGL~WLlsLy~n-~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~ 1140 (2693)
..|.+. +.+++.|..+. ..|.|||+.|+.||+..... +.||||||+||||||+.+|++|..-.... ...
T Consensus 305 ~~e~~P~et~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a 383 (901)
T KOG4439|consen 305 ATETIPGETDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESA 383 (901)
T ss_pred HhhcCCCcccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 345554 34567787775 79999999999999876544 57899999999999999999998754332 122
Q ss_pred CCEEEEecCchHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc--------cCCCcc
Q 000047 1141 GPFLVVVPSSVLPGWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK--------HDRPKL 1210 (2693)
Q Consensus 1141 gP~LIVVPtSLL~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~--------~Dr~~L 1210 (2693)
.+.|||||.++++||..||++-.- -+.|++|+|+.. | .+-. -....||||||||..+.+. .+...|
T Consensus 384 ~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-~i~~--~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL 459 (901)
T KOG4439|consen 384 SKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNK-R-EISA--KELRKYDVVITTYNLVANKPDDELEEGKNSSPL 459 (901)
T ss_pred CCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc-c-cCCH--HHHhhcceEEEeeeccccCCchhhhcccCccHH
Confidence 358999999999999999987753 578999999874 2 1211 1236899999999988762 133468
Q ss_pred cccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCC
Q 000047 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNG 1290 (2693)
Q Consensus 1211 ~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g 1290 (2693)
..+.|.+||+||||.+||..++-+.++-.+.+.+||+|||||+||++-|+|+||.||+...|++.+.|.+|+..+-..
T Consensus 460 ~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~-- 537 (901)
T KOG4439|consen 460 ARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG-- 537 (901)
T ss_pred HHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998653221
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhh-----cCccceeEeeeccccHHHHHHHHHHHHHhhc-----
Q 000047 1291 DNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN-----ELPEKIERLVRCEASAYQKLLMKRVEENLGS----- 1360 (2693)
Q Consensus 1291 ~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVek-----eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s----- 1360 (2693)
..+||.-+.++.||||+|..... .||.+...++.++|+......|..+......
T Consensus 538 ----------------g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~ 601 (901)
T KOG4439|consen 538 ----------------GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQF 601 (901)
T ss_pred ----------------chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHH
Confidence 23567778899999999998876 8999999999999998887777655322100
Q ss_pred ---------cCC--C-----------------------------CCcchhHHHHHHHHhhCCccccchhhh---------
Q 000047 1361 ---------IGN--S-----------------------------KGRSVHNSVMELRNICNHPYLSQLHAE--------- 1391 (2693)
Q Consensus 1361 ---------i~~--s-----------------------------k~rslln~LmqLRKICnHPyL~~~~~E--------- 1391 (2693)
.+. . ....++..+++||++|+|+-+.....+
T Consensus 602 L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~ 681 (901)
T KOG4439|consen 602 LLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGG 681 (901)
T ss_pred HHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCc
Confidence 000 0 001247778999999999955321100
Q ss_pred ---h-----hhcc------------------CCCC---CCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHH
Q 000047 1392 ---E-----VDTL------------------IPKH---YLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDV 1441 (2693)
Q Consensus 1392 ---E-----id~l------------------i~~~---~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDI 1441 (2693)
+ .+.+ .+.. ..-...+.+.|+..+.++|..+ .....|++|.+||+.++++
T Consensus 682 ~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLni 761 (901)
T KOG4439|consen 682 DDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNI 761 (901)
T ss_pred chhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHH
Confidence 0 0000 0000 0112345778999999999887 6678999999999999999
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhc
Q 000047 1442 MEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 1521 (2693)
Q Consensus 1442 Led~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAH 1521 (2693)
++..|...|+.|..++|.....+|+.+++.||..+...+|+|||..|||.||||..|+++|++|+.|||+.+.||.+|++
T Consensus 762 v~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIY 841 (901)
T KOG4439|consen 762 VRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIY 841 (901)
T ss_pred HHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCc--ccCCCCHHHHH
Q 000047 1522 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF--FDNNTSAEDRR 1574 (2693)
Q Consensus 1522 RIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~--fD~~ss~eE~~ 1574 (2693)
|+||+|+|.||||++.+|||++|...+..|++++..|+.+.. -.++.+..+.+
T Consensus 842 R~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk 896 (901)
T KOG4439|consen 842 RMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLK 896 (901)
T ss_pred HhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHH
Confidence 999999999999999999999999999999999999997532 23444544443
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=539.56 Aligned_cols=481 Identities=31% Similarity=0.501 Sum_probs=377.2
Q ss_pred CcchHHHHHHHHHHHH-------Hhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVS-------LYN--NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLls-------Ly~--n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|+|||+-||+||.. .|+ .+.|||||+.||||||+|+|+|+--++..... +.+|+|+|-.+|.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~A-KtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKA-KTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCcc-ceEEEEEehHHHHHHHHHh
Confidence 4789999999999853 222 36799999999999999999999888765554 4599999999999999999
Q ss_pred HHHCCCC-----------cEEEEcCC---hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC------------------
Q 000047 1160 NFWAPRI-----------HKIVYCGP---PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR------------------ 1207 (2693)
Q Consensus 1160 eKwaPsL-----------kVIvy~Gs---~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr------------------ 1207 (2693)
..|.|.+ .+++.... -..|.+++..|. ..-.|+++-|++++-..-+
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv--~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV--QTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh--ccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 9999852 23333222 234545544443 5667999999988521110
Q ss_pred ------------------CcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1208 ------------------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1208 ------------------~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
..|.+-..|+|||||+|||||.....+.+|+.++.++||.|||-|+||||-|+|.+++|++|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 12455568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcCcccCCCCCC--chhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHH
Q 000047 1270 NIFNSSEDFSQWFNKPFESNGDNS--PDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 1347 (2693)
Q Consensus 1270 ~iF~S~k~F~e~F~kP~e~~g~~s--~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Q 1347 (2693)
+++++..+|...|.+||.++.-.+ .+...+.. .-...||.+|..|+-||.-..+...||.+.|++|.+.++..|
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmr----yRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQ 565 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMR----YRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQ 565 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHHHHH----HHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHH
Confidence 999999999999999999876433 33333322 234579999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhccCCCCCc--chhHHHHHHHHhhCCccccchhhh------h----hhccC---------C-----C-
Q 000047 1348 KLLMKRVE-ENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAE------E----VDTLI---------P-----K- 1399 (2693)
Q Consensus 1348 k~LYk~Le-e~l~si~~sk~r--slln~LmqLRKICnHPyL~~~~~E------E----id~li---------~-----~- 1399 (2693)
+.||+.+. .....++..... ..+.++.-..+|+|||.+.....+ + ++.+. + .
T Consensus 566 R~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~ 645 (1387)
T KOG1016|consen 566 RQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSN 645 (1387)
T ss_pred HHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCC
Confidence 99999875 333333333222 344555567888999976432111 0 10000 0 0
Q ss_pred -----------------------------------------------CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEE
Q 000047 1400 -----------------------------------------------HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFF 1432 (2693)
Q Consensus 1400 -----------------------------------------------~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIF 1432 (2693)
.|-..++..+.|+..+.+++.+-..-|.|+|||
T Consensus 646 ~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~f 725 (1387)
T KOG1016|consen 646 PSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIF 725 (1387)
T ss_pred CCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEe
Confidence 000001112234444444444445568999999
Q ss_pred EcchHHHHHHHHHHhhc------------------CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccC
Q 000047 1433 STMTRLLDVMEDYLTFK------------------QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN 1494 (2693)
Q Consensus 1433 SQft~tLDILed~L~~r------------------GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLN 1494 (2693)
+|....+|.|+++|..+ ...|+++||.++..+|+++|++||.+-+=.+.|||||++|..|||
T Consensus 726 Sq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGin 805 (1387)
T KOG1016|consen 726 SQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGIN 805 (1387)
T ss_pred ecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccce
Confidence 99999999999999753 346999999999999999999998866545799999999999999
Q ss_pred ccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCcccCCCCHHHHH
Q 000047 1495 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRR 1574 (2693)
Q Consensus 1495 LQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~fD~~ss~eE~~ 1574 (2693)
|-.|+.+|+||..|||..+.||++|++|+||+|+|+|||||..+++|.+||.|+..|..|.++|+++-.-+.+.+..|.+
T Consensus 806 LIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~e 885 (1387)
T KOG1016|consen 806 LISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELE 885 (1387)
T ss_pred eeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666666665544
Q ss_pred HH
Q 000047 1575 EY 1576 (2693)
Q Consensus 1575 el 1576 (2693)
.+
T Consensus 886 nL 887 (1387)
T KOG1016|consen 886 NL 887 (1387)
T ss_pred HH
Confidence 43
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-53 Score=556.24 Aligned_cols=438 Identities=19% Similarity=0.205 Sum_probs=325.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|.|||+..+.++... ...+.||||||||||||+|++++.+++..+ ..+|+|||||.+|+.||..|+.+|+ ++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 57999999998876553 356789999999999999999998887654 4567999999999999999998887 3566
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEccccccccc---cchHHHHHHhh--cc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNA---SCKLNADLKHY--QS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~---sSKlsraLk~L--ka 1242 (2693)
.+|.+........ ........++++|+||+++.+... ...+....|++|||||||+++|. .++.++.+..+ ++
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 6665543221100 011223467899999999986321 23466789999999999999963 56678888777 56
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC--cc-------cCCCCCCc-hhhhhHHH----------
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK--PF-------ESNGDNSP-DEALLSEE---------- 1302 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k--P~-------e~~g~~s~-~e~~LseE---------- 1302 (2693)
+++|+|||||++|+..|+|++|+||+|..|.++..|.+.+.. ++ ........ ....+...
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 899999999999999999999999999999999999875542 11 01111000 00011000
Q ss_pred ------------HHHHHHHHHHH--HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1303 ------------ENLLIINRLHQ--VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1303 ------------e~lliI~RLhk--VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
.....+..|.. -...+|+|+++.+|. .+|.+..+.+.+++.......+...
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~-------------- 450 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVS-------------- 450 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHh--------------
Confidence 00011111111 112678899999986 5899988888888865333222210
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-h
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-T 1447 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L-~ 1447 (2693)
....+++ +.+|..... ... .....+..+.|+++|.++|..+. ++||||||++..+++.|.++| .
T Consensus 451 ---~~~~~~~-~l~pe~~~~---~~~------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 451 ---LEARARD-MLYPEQIYQ---EFE------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred ---HHHHHHh-hcCHHHHHH---HHh------hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhh
Confidence 0011222 222211000 000 00112445689999999998654 789999999999999999999 5
Q ss_pred hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1448 ~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
..|++++.|||+++..+|.++++.|+.++..+. |||+|++||+||||+.|++||+||+||||..|+||+||+||+||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCc
Confidence 679999999999999999999999987543444 5788999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1528 eV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
+|.||+++..+|++++|++....|+++++.++..+
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999765
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=494.45 Aligned_cols=420 Identities=27% Similarity=0.372 Sum_probs=325.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|.|||++||+|.+. ++.++|||||||||||+|||+++.|+. ..+|+|||||.++...|.++|.+|+|.+.-
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyr----aEwplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYR----AEWPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHh----hcCcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 4799999999999876 677889999999999999999998875 357999999999999999999999998765
Q ss_pred E-EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh--ccccc
Q 000047 1169 I-VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHR 1245 (2693)
Q Consensus 1169 I-vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L--ka~~R 1245 (2693)
+ +..+.. ++- .....-..|.|.+|+.+.... ..|..-+|.+||+||+|++|+..+++.+++.-+ .+.|.
T Consensus 270 i~vv~~~~-D~~-----~~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 270 IFVVDKSS-DPL-----PDVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHV 341 (689)
T ss_pred eEEEeccc-CCc-----cccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhhe
Confidence 2 222221 110 011123568899999998744 367777899999999999999999999888765 67899
Q ss_pred ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh-hhhhhhhH
Q 000047 1246 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR-PFVLRRLK 1324 (2693)
Q Consensus 1246 LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr-PFLLRRtK 1324 (2693)
|||||||--..+.|||.++..+++.+|..+.+|...|+..-....-.+ ........+|+-+|. -.|+||+|
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D--------ykg~tnl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD--------YKGCTNLEELAALLFKRLMIRRLK 413 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee--------cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886422211110 111122445666665 46899999
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
.+|+.+||+|...++.+ ....+....+.+....... . ..+ .|+-.+.|---+..
T Consensus 414 ~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~-----t-~~~-~~e~~~~~l~l~y~------------------ 467 (689)
T KOG1000|consen 414 ADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADY-----T-KVN-SMERKHESLLLFYS------------------ 467 (689)
T ss_pred HHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhhc-----c-hhh-hhhhhhHHHHHHHH------------------
Confidence 99999999996555443 2222322222222111110 0 000 11111111100000
Q ss_pred hhhcccHHHHHHHHHHH----hhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1405 IVRLCGKLEMLDRLLPK----LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~k----LkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
...-.|+..+.+.|.. ..+.+.|+|||+++..++|-|+.++..+++.++||||+|+..+|..+++.|+. +.++.
T Consensus 468 -~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~ 545 (689)
T KOG1000|consen 468 -LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVR 545 (689)
T ss_pred -HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceE
Confidence 0112366666666655 45678999999999999999999999999999999999999999999999954 56799
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
|-+||..|+|.||+|++|+.|+|..++|||...+||.+|+|||||+..|.||+||+++|+||.+|..++.|++++..+-
T Consensus 546 VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 546 VAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887654
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=510.85 Aligned_cols=391 Identities=43% Similarity=0.679 Sum_probs=343.5
Q ss_pred ccCCCccC--CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1080 SEQPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1080 ~eqP~~L~--ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
..||..+. ++.|.+||.+|++|+...+..+..+|||||||+|||+++|.+++.++......+|+|+++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46787776 5899999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHh-------------------hhhcCCccEEEEcHHHHHhccCCCcccccCccEE
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKE-------------------KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke-------------------~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~V 1218 (2693)
|+..|+|.+.++.|.|+...|.-+... ......|+|.+++|+.+.. +...+..+.|.++
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~l 440 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLL 440 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhccee
Confidence 999999999999999998766533211 1124578999999999976 7778999999999
Q ss_pred EEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhh
Q 000047 1219 IIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEAL 1298 (2693)
Q Consensus 1219 IIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~ 1298 (2693)
|+||+||++|..+++.+.+..+...++++|||||++|++.||+++|+||.|+.|++...|.+.|..
T Consensus 441 ivde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d-------------- 506 (696)
T KOG0383|consen 441 IVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD-------------- 506 (696)
T ss_pred EeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch--------------
Confidence 999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHH-hhccC-CCCCcchhHHHHHH
Q 000047 1299 LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN-LGSIG-NSKGRSVHNSVMEL 1376 (2693)
Q Consensus 1299 LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~-l~si~-~sk~rslln~LmqL 1376 (2693)
......++.||.++.|+|+||+|.||.+.+|.|.+.++.+.|+..|+.+|+.+... +..+. ....-.++|++|+|
T Consensus 507 ---~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel 583 (696)
T KOG0383|consen 507 ---ISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMEL 583 (696)
T ss_pred ---hhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHH
Confidence 11234578999999999999999999999999999999999999999999988542 22221 22234678999999
Q ss_pred HHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEE
Q 000047 1377 RNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRL 1456 (2693)
Q Consensus 1377 RKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRL 1456 (2693)
||+|+|||++...+..... .......+++.++|+.+|..++++++..|||||||+||+.++|+|++||...+ .|.|+
T Consensus 584 ~K~~~hpy~~~~~e~~~~~--~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~ 660 (696)
T KOG0383|consen 584 RKQCNHPYLSPLEEPLEEN--GEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERI 660 (696)
T ss_pred HHhhcCcccCccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceec
Confidence 9999999999762211100 01123457889999999999999999999999999999999999999999999 99999
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1457 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1457 DGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
||.....+|+.+|++||.+++.-||||+||+|||+|
T Consensus 661 dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 661 DGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999999999999999999999999999988
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=473.30 Aligned_cols=443 Identities=32% Similarity=0.448 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHhh-cCCCeEEEcCCCCChHHHHHHHHHHHHHhcC------CCCCEEEEecCchHHHHHHHHHHHCC-
Q 000047 1093 EYQMSGLRWLVSLYN-NQLNGILADEMGLGKTVQVIALICYLMETKN------DRGPFLVVVPSSVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~-n~lnGILADEMGLGKTIQAIALIa~Lle~k~------~~gP~LIVVPtSLL~QW~eEfeKwaP- 1164 (2693)
.+|..+..|+..... .-.+||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444443322 2368999999999999999999875433322 34558999999999999999965553
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
.+.+.+|+| |.+ .......++||||||..+.. ..+..+.|-.||+||||.++|..++.++++..+.+.
T Consensus 215 ~~l~v~v~~g----r~k---d~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~ 283 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTK---DKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAK 283 (674)
T ss_pred cceEEEEecc----ccc---ccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchHhhhhheeeccc
Confidence 467788888 211 12223678899999999974 467779999999999999999999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+||.|||||+||++.|||+++.|+.-..|..+..|...+..|+..+.. .....+++.+|+.+++||+
T Consensus 284 ~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-------------~~~~k~l~~~L~~v~lrrt 350 (674)
T KOG1001|consen 284 YRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-------------KEGVKTLQGILKKVMLRRT 350 (674)
T ss_pred eeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-------------HHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999888887765431 2346788999999999999
Q ss_pred HhHH-----hhcCccceeEeeeccccHHHHHHHHHHHHHhhcc---------CCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1324 KHKV-----ENELPEKIERLVRCEASAYQKLLMKRVEENLGSI---------GNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1324 KkDV-----ekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si---------~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
|..- ...||++...++.+.++...+.+|+.+..+.... ....+..++..+.+||++|+||+++...
T Consensus 351 K~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~ 430 (674)
T KOG1001|consen 351 KEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYE 430 (674)
T ss_pred ccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhh
Confidence 8632 3479999999999999999999998876543211 1123446677788999999999885422
Q ss_pred hhhh--------------hcc----C---CCCC----------------------------------------------C
Q 000047 1390 AEEV--------------DTL----I---PKHY----------------------------------------------L 1402 (2693)
Q Consensus 1390 ~EEi--------------d~l----i---~~~~----------------------------------------------l 1402 (2693)
.... ..+ . .... .
T Consensus 431 ~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~ 510 (674)
T KOG1001|consen 431 MDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPL 510 (674)
T ss_pred hhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccc
Confidence 1100 000 0 0000 0
Q ss_pred Chhhh----cccHHHHHHHHHHHhhcCCC-eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1403 PPIVR----LCGKLEMLDRLLPKLKATDH-RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1403 ~~Lvr----~SgKLelLdeLL~kLkatGh-KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
...+. .+.|+..+.++|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..|+ .+.
T Consensus 511 ~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~ 589 (674)
T KOG1001|consen 511 PSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDP 589 (674)
T ss_pred cchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCc
Confidence 00011 14567777777775544444 9999999999999999999999999999999999999999999997 677
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhh
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQ 1557 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~k 1557 (2693)
.+.|+|+|.+||+.||||+.|++||++|++|||..+.||++|||||||+++|.|+||+..+|+||+|+..+++|+.+...
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~ 669 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNAS 669 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hcc
Q 000047 1558 SIT 1560 (2693)
Q Consensus 1558 VIq 1560 (2693)
+..
T Consensus 670 a~~ 672 (674)
T KOG1001|consen 670 AFG 672 (674)
T ss_pred hcc
Confidence 654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=376.26 Aligned_cols=275 Identities=41% Similarity=0.725 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHh---------hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCC--CEEEEecCchHHHHHHHHHHH
Q 000047 1094 YQMSGLRWLVSLY---------NNQLNGILADEMGLGKTVQVIALICYLMETKNDRG--PFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1094 YQleGL~WLlsLy---------~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~g--P~LIVVPtSLL~QW~eEfeKw 1162 (2693)
||++||.||+.++ ....|||||||||+|||+++|+++.++.......+ ++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77889999999999999999999998877655443 699999999999999999999
Q ss_pred C-C-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH---hccCCCcccccCccEEEEccccccccccchHHHHH
Q 000047 1163 A-P-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM---NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1163 a-P-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li---k~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
+ + .+++++|.|....+. ........++|+|+||+.+. .......+...+|++|||||+|++||..++.++++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR---LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH---TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccc---ccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 688999988762222 12234568999999999998 11244567778899999999999999999999999
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
..+.+.++|+|||||++|++.|||.+++||.|..+.....|.++|..+ ..........+|..++++
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~--------------~~~~~~~~~~~L~~~l~~ 223 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP--------------DKENSYENIERLRELLSE 223 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH--------------HHTHHHHHHHHHHHHHCC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh--------------ccccccccccccccccch
Confidence 999999999999999999999999999999999999999999988653 122344567899999999
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCC-------CCcchhHHHHHHHHhhCCccc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNS-------KGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~s-------k~rslln~LmqLRKICnHPyL 1385 (2693)
|++||.+.++...||+..+.++.|+|++.|+.+|+.+.......... ....++..+++||++|+||+|
T Consensus 224 ~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 224 FMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp CEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred hhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCccc
Confidence 99999999998899999999999999999999999887655432221 234678889999999999987
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=386.77 Aligned_cols=349 Identities=19% Similarity=0.293 Sum_probs=252.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP-- 1164 (2693)
...|||||.++|.|+.. .....+|||+++||+|||++++++++.+ .+++|||||..+ +.||.++|.+|+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 47899999999998863 1122589999999999999999988765 356999999875 7899999999973
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------CcccccCccEEEEccccccccccchHHHH
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------PKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
...+..|.|..... ......|+|+||+++.....+ ..|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 45566677653221 123578999999998643211 234556899999999999954 334456
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
+..+.+.+||+|||||++++ +.+..|+|+ .|.+|.. .|. .++
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~---------------------------------eLi 438 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWM---------------------------------ELQ 438 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHH---------------------------------HHH
Confidence 77789999999999999876 334445544 3433211 000 000
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+ ...|.+.....++|+|++.....|..... . .+..+
T Consensus 439 ~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------~-----------~k~~l--------------- 474 (732)
T TIGR00603 439 K-----------KGFIANVQCAEVWCPMTPEFYREYLRENS-------R-----------KRMLL--------------- 474 (732)
T ss_pred h-----------CCccccceEEEEEecCCHHHHHHHHHhcc-------h-----------hhhHH---------------
Confidence 0 11233444566889999754333321100 0 00000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
......|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.+++++|+.+
T Consensus 475 ---------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 475 ---------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred ---------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhC
Confidence 001235889988888876678999999999999888887776 33 4589999999999999999754
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCccc-----EEEEEEEeCCCHHHHHHHHHH
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRD-----VLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKe-----V~VyRLIT~gSIEEkIlerae 1549 (2693)
. .+. +|++|++|++||||+.|++||++++++ ++..++||+||+.|.+..+. ..+|.|++.+|.|+....+.+
T Consensus 541 ~-~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq 618 (732)
T TIGR00603 541 P-KVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQ 618 (732)
T ss_pred C-Ccc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHH
Confidence 2 222 577779999999999999999999986 99999999999999987654 789999999999998765444
Q ss_pred H
Q 000047 1550 H 1550 (2693)
Q Consensus 1550 k 1550 (2693)
+
T Consensus 619 ~ 619 (732)
T TIGR00603 619 R 619 (732)
T ss_pred H
Confidence 3
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=383.10 Aligned_cols=435 Identities=18% Similarity=0.174 Sum_probs=283.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs-- 1165 (2693)
.++|+||.+.+..++. .|+|++++||+|||++++.++.+++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4789999998887764 38999999999999999988887773 334679999998 6778999999988642
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh---cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY---QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L---ka 1242 (2693)
..+..+.|......+. . .....+|+|+|++.+........+....|++|||||||++.+..+..+..-..+ +.
T Consensus 87 ~~v~~~~g~~~~~~r~---~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---E-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHHH---H-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 3677787754332211 1 123579999999999876544556667899999999999987554333222212 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCCh----hHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSS----EDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~----k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.++++|||||..+ ...+..+++.|....+..+ ..+..++..+- .......+. ..+..++..|..+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~-----v~~~~v~l~-----~~~~~i~~~l~~~ 231 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK-----IEWVRVELP-----EELKEIRDLLNEA 231 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce-----eEEEEeCCc-----HHHHHHHHHHHHH
Confidence 5689999999765 5666666665543322111 12222222110 000001111 1244677778888
Q ss_pred hhhhhHhHHhhcC-ccceeEeeeccccHHHHHHHHHHHHHhh--------------------ccCCCCCcchhHHHHHHH
Q 000047 1319 VLRRLKHKVENEL-PEKIERLVRCEASAYQKLLMKRVEENLG--------------------SIGNSKGRSVHNSVMELR 1377 (2693)
Q Consensus 1319 LLRRtKkDVekeL-P~KiE~vV~ceLSa~Qk~LYk~Lee~l~--------------------si~~sk~rslln~LmqLR 1377 (2693)
+.+|++....... +.....+....+...++.++..+...-. .........+...+..++
T Consensus 232 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 232 LKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7777766543222 1221122223333334333333221000 000000000111111111
Q ss_pred HhhCCccccchhhhhhhccCCCC-------CCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1378 NICNHPYLSQLHAEEVDTLIPKH-------YLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1378 KICnHPyL~~~~~EEid~li~~~-------~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
..+.++-.. .....++... ....+....+|+..|.++|.++. ..+.|+||||++.+++++|.++|..
T Consensus 312 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 312 EEARSSGGS----KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred hhccccCCc----HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 111000000 0000000000 00111234679999999998876 5789999999999999999999999
Q ss_pred cCCeEEEEeCC--------CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh
Q 000047 1449 KQYRYLRLDGH--------TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 1520 (2693)
Q Consensus 1449 rGikylRLDGS--------TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA 1520 (2693)
.|+.+.+++|. ++..+|.+++++|+.+... +|++|+++++|+|++.|++||+||++||+..++||.||+
T Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 388 EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999987 8889999999999887654 789999999999999999999999999999999999999
Q ss_pred cccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000047 1521 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1521 HRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li 1555 (2693)
+|.|+ +.||.|++.+|+||.+|....+|...+
T Consensus 465 gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 465 GRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 88875 678999999999999988777665544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=301.82 Aligned_cols=428 Identities=20% Similarity=0.181 Sum_probs=277.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--Ps 1165 (2693)
.+.|.||.....-.+. .|.+++.+||||||++|+.++.+.+...+. .+|+++|+ -|+.|...-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4789999998876664 489999999999999999999877665543 58999997 66788888888776 45
Q ss_pred CcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH--HHHHhhc
Q 000047 1166 IHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN--ADLKHYQ 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls--raLk~Lk 1241 (2693)
..++.+.|.. .+|...| .+-+|+++|++.+.+++-...+...++.+||+|||||.-+..+-.+ +....+.
T Consensus 87 ~~i~~ltGev~p~~R~~~w------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 87 DEIAALTGEVRPEEREELW------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hheeeecCCCChHHHHHHH------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 6778888854 4454443 4679999999999998877788888999999999999866544322 2222333
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCC--C--hhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFN--S--SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~--S--~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
..+.|+||||| -++.+.+...++-|.-+-.. + ..+...+... ......+..+.. +-..+...|..+|+
T Consensus 161 k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-----~kve~ikV~lp~-e~~~ir~~l~~~l~ 233 (542)
T COG1111 161 KNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-----IKVEWIKVDLPE-EIKEIRDLLRDALK 233 (542)
T ss_pred cCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-----ceeEEEeccCcH-HHHHHHHHHHHHHH
Confidence 34679999999 56777777777666433221 1 1111111110 000011111221 22234445555555
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh-ccC--------------------------CCCCcch
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIG--------------------------NSKGRSV 1369 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~-si~--------------------------~sk~rsl 1369 (2693)
+.+ +.--... .....++ ..++.+.......+. ... ...-..+
T Consensus 234 ~~L----k~L~~~g-----~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~ 302 (542)
T COG1111 234 PRL----KPLKELG-----VIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPF 302 (542)
T ss_pred HHH----HHHHHcC-----ceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 433 2211111 1111111 111211111100000 000 0000011
Q ss_pred hHHHHHHHHh------------hCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcc
Q 000047 1370 HNSVMELRNI------------CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTM 1435 (2693)
Q Consensus 1370 ln~LmqLRKI------------CnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQf 1435 (2693)
.+.+..|..- ...|+......... .....--..+|++.|.++|.+.. ..+.|||||++|
T Consensus 303 ~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~-------~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~y 375 (542)
T COG1111 303 YQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLI-------RADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEY 375 (542)
T ss_pred HHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHH-------HhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 1111111111 11111110000000 00001112479999999999876 557899999999
Q ss_pred hHHHHHHHHHHhhcCCeEE-EEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC
Q 000047 1436 TRLLDVMEDYLTFKQYRYL-RLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506 (2693)
Q Consensus 1436 t~tLDILed~L~~rGikyl-RLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp 1506 (2693)
+++++.|.++|...|.... ++-| +|++.+..++|++|++++-+ +|++|.+|.+|||++++|.|||||+
T Consensus 376 RdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEp 452 (542)
T COG1111 376 RDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEP 452 (542)
T ss_pred HhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecC
Confidence 9999999999999888775 6655 59999999999999988765 8999999999999999999999999
Q ss_pred CCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1507 pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
--++...+||.||++|- +.-+||-|++++|-||.-|....+|...+...|.
T Consensus 453 vpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 453 VPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred CcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 6678999999999999999999888766655553
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=298.18 Aligned_cols=367 Identities=20% Similarity=0.242 Sum_probs=260.4
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
...+||+||.+++..++..+.....||+...||.|||+.++.++..+. ..+|||||. .++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 357899999999988887666688999999999999999999888763 238999997 5569999888888754
Q ss_pred C-cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1166 I-HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1166 L-kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
. .+-.|.|..... .. ..|+|+||+++.+......+...+|++||+|||||+-+... ...+..+...+
T Consensus 107 ~~~~g~~~~~~~~~---------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~--~~~~~~~~~~~ 174 (442)
T COG1061 107 NDEIGIYGGGEKEL---------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY--RRILELLSAAY 174 (442)
T ss_pred ccccceecCceecc---------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH--HHHHHhhhccc
Confidence 3 344444432111 01 57999999999874222344455899999999999865443 33445566666
Q ss_pred -cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1245 -RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1245 -RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+|+|||||...+...+..++.++.|.++.- ++
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~-----------------------------------------------~~ 207 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGPIVYEV-----------------------------------------------SL 207 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcCCeEeec-----------------------------------------------CH
Confidence 999999997554333333333332221110 01
Q ss_pred HhHHh-hcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1324 KHKVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1324 KkDVe-keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
+..+. ..|.+.....+.+.++......|................ .......+.
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------------ 261 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT--LRAENEARR------------------------ 261 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--hhHHHHHHH------------------------
Confidence 11122 356667777788878777776666543322111110000 000000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.......|+..+..++.... .+.++|||+......+.|...|...|+ ...++|.++..+|..++++|+.++.+ +
T Consensus 262 -~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~---~ 335 (442)
T COG1061 262 -IAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK---V 335 (442)
T ss_pred -HhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC---E
Confidence 11223457788888888766 789999999999999999999998888 89999999999999999999887643 8
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-CCccc--EEEEEEEeCCCHHHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQKRD--VLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-GQkKe--V~VyRLIT~gSIEEkIleraek 1550 (2693)
|++++++.+|+|+++|+++|+..+.-++..++|++||+.|. ..+.. +..|-++...+.+..+......
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 99999999999999999999999999999999999999994 44444 7778888888888776655443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=300.86 Aligned_cols=340 Identities=15% Similarity=0.184 Sum_probs=228.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--C
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--P 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--P 1164 (2693)
.+.||+||.+++..++. +.++||...||+|||++++.++.+++... ..++|||||+ .|+.||.++|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36899999999976664 66789999999999999877766655432 3369999998 66799999999876 3
Q ss_pred CCcE-EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cc
Q 000047 1165 RIHK-IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QS 1242 (2693)
Q Consensus 1165 sLkV-Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka 1242 (2693)
...+ .++.|... ....+|+|+|++.+.+... ..+ .+|++|||||||++... .+...+..+ ++
T Consensus 186 ~~~~~~i~~g~~~-----------~~~~~I~VaT~qsl~~~~~-~~~--~~~~~iIvDEaH~~~~~--~~~~il~~~~~~ 249 (501)
T PHA02558 186 REAMHKIYSGTAK-----------DTDAPIVVSTWQSAVKQPK-EWF--DQFGMVIVDECHLFTGK--SLTSIITKLDNC 249 (501)
T ss_pred ccceeEEecCccc-----------CCCCCEEEeeHHHHhhchh-hhc--cccCEEEEEchhcccch--hHHHHHHhhhcc
Confidence 3333 34444321 1357899999999976321 122 47899999999999753 345556666 57
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
+++++|||||...... .+.+..++.|-.... . ...++.
T Consensus 250 ~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~v--~---------------------------------~~~li~------ 287 (501)
T PHA02558 250 KFKFGLTGSLRDGKAN-ILQYVGLFGDIFKPV--T---------------------------------TSQLME------ 287 (501)
T ss_pred ceEEEEeccCCCcccc-HHHHHHhhCCceEEe--c---------------------------------HHHHHh------
Confidence 8899999999543221 111111111100000 0 000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+.......+.+..+......+ ....... .+..
T Consensus 288 -----~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~---~~~~------------------------ 322 (501)
T PHA02558 288 -----EGQVTDLKINSIFLRYPDEDRVKL-------------KGEDYQE---EIKY------------------------ 322 (501)
T ss_pred -----CCCcCCceEEEEeccCCHHHhhhh-------------cccchHH---HHHH------------------------
Confidence 001111111122222221100000 0000000 0000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
+.....+..++.+++..+...++++||||..++.++.|.+.|...|+++..|+|.++.++|..+++.|+.+. ..|+
T Consensus 323 --l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~vL 398 (501)
T PHA02558 323 --ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GIII 398 (501)
T ss_pred --HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--CeEE
Confidence 112233566777777777778899999999999999999999999999999999999999999999997543 3454
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc-EEEEEEEeCCCH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD-VLVLRFETVQTV 1540 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe-V~VyRLIT~gSI 1540 (2693)
|.+++.+++|+|++.+|+||+++|..+...++|++||++|.+..|. +.||.|+..-.+
T Consensus 399 vaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 399 VASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred EEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 5555999999999999999999999999999999999999988765 899999875443
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=321.37 Aligned_cols=257 Identities=25% Similarity=0.422 Sum_probs=194.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH------------hc---CCCCCEEEEecCchHHHHHHHHHHHCCCC-cEEEEc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME------------TK---NDRGPFLVVVPSSVLPGWESEINFWAPRI-HKIVYC 1172 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle------------~k---~~~gP~LIVVPtSLL~QW~eEfeKwaPsL-kVIvy~ 1172 (2693)
+..+++|||||+|||...+++...-.. .+ ...|..|||||.+++.||..||.++++.. +|..|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 445699999999999998877653211 01 12356899999999999999999999876 999999
Q ss_pred CChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------------------CcccccCccEEEEccccccccccch
Q 000047 1173 GPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------------------PKLSKIQWHYIIIDEGHRIKNASCK 1232 (2693)
Q Consensus 1173 Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------------------~~L~kikWd~VIIDEAHRIKN~sSK 1232 (2693)
|-... .+........+|||+|||+.|+..... ..|..+.|..||+|||+-+....+.
T Consensus 454 Girk~---~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~ 530 (1394)
T KOG0298|consen 454 GIRKT---FWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSA 530 (1394)
T ss_pred chhhh---cccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHH
Confidence 95432 222223456899999999999754321 2366678999999999999999999
Q ss_pred HHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1233 LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1233 lsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.++.+.++++.++|++||||+++ +.+|+.||+||.-..|+...+|.+.+..++... .....++
T Consensus 531 ~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r----------------a~~~~~~ 593 (1394)
T KOG0298|consen 531 AAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR----------------AKCEPLL 593 (1394)
T ss_pred HHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH----------------hhhhhHH
Confidence 99999999999999999999999 999999999999888999999988876544322 2234677
Q ss_pred HHhhhhhhhhhHhHHhh--cCccceeEeeeccccHHHHHHHHHHH--------HHh-----hccCCC---------CCcc
Q 000047 1313 QVLRPFVLRRLKHKVEN--ELPEKIERLVRCEASAYQKLLMKRVE--------ENL-----GSIGNS---------KGRS 1368 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVek--eLP~KiE~vV~ceLSa~Qk~LYk~Le--------e~l-----~si~~s---------k~rs 1368 (2693)
.++...+-|+.|.+|+. .+|+..+.+....+++.+..+|+..- ..+ ..++.. ....
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 88888899999998876 46887777777777777666665321 111 011111 1235
Q ss_pred hhHHHHHHHHhhCCccc
Q 000047 1369 VHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL 1385 (2693)
+.+.+.+||++|+||..
T Consensus 674 i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHhhccccc
Confidence 67788899999999843
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=293.55 Aligned_cols=323 Identities=18% Similarity=0.266 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-HHHHhc---CCCCC-EEEEecCch-HHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-YLMETK---NDRGP-FLVVVPSSV-LPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-~Lle~k---~~~gP-~LIVVPtSL-L~QW~eEfeKw 1162 (2693)
.++.++|.+++..++. +.+.|+..+||+|||++++..+. ++.... ...+| +|||||+.. ..||..++.+|
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 3688999999988775 78999999999999998765433 333221 11233 799999855 57899999988
Q ss_pred CCC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHH
Q 000047 1163 APR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLK 1238 (2693)
Q Consensus 1163 aPs--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk 1238 (2693)
... +++.+.+|......+.. ......+|+|+|++.|........+...++++|||||||+|..... .+.+.+.
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~ 303 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVS 303 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHH
Confidence 753 45555555443332221 1235689999999999876555455556789999999999976542 2334444
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. ...+++|||.- .++..+. .+|
T Consensus 304 ~~~~~~q~l~~SAT~p----~~v~~l~---------------~~l----------------------------------- 329 (545)
T PTZ00110 304 QIRPDRQTLMWSATWP----KEVQSLA---------------RDL----------------------------------- 329 (545)
T ss_pred hCCCCCeEEEEEeCCC----HHHHHHH---------------HHH-----------------------------------
Confidence 4433 34578899951 1111100 000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
+ ...|.. +.+.. ........ + .+.+
T Consensus 330 -~---------~~~~v~----i~vg~-----------------~~l~~~~~-------i----~q~~------------- 354 (545)
T PTZ00110 330 -C---------KEEPVH----VNVGS-----------------LDLTACHN-------I----KQEV------------- 354 (545)
T ss_pred -h---------ccCCEE----EEECC-----------------CccccCCC-------e----eEEE-------------
Confidence 0 000000 00000 00000000 0 0000
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
.++....|...|..+|..+...+.++||||+....++.|...|...|+..+.+||.++.++|.++++.|+.+..
T Consensus 355 ------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 355 ------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred ------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 00112347788888888877678999999999999999999999999999999999999999999999988766
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
. +||+|+++++|||++++++||+||+++++..|+||+||++|.|.+-. +|.|++.+
T Consensus 429 ~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 429 P---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred c---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 5 79999999999999999999999999999999999999999997644 45556554
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=283.79 Aligned_cols=318 Identities=20% Similarity=0.302 Sum_probs=224.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa---P 1164 (2693)
..+.|+|.+++..++. +.+.|+..+||+|||..++..+...+........+|||||+.. ..||.+++++++ +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4688999999998775 7889999999999998877666655543332334799999855 578999988764 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka 1242 (2693)
.+++..++|......+. .....+.+|+|+|++.+.....+..+...++++|||||||+|.+... .+...+..+..
T Consensus 101 ~~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred CcEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc
Confidence 67887777765443322 11236789999999999876655555566789999999999876432 23334444433
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...|++|||+- .++..+. ..|..
T Consensus 178 ~~q~ll~SAT~~----~~~~~l~---------------~~~~~------------------------------------- 201 (460)
T PRK11776 178 RRQTLLFSATYP----EGIAAIS---------------QRFQR------------------------------------- 201 (460)
T ss_pred ccEEEEEEecCc----HHHHHHH---------------HHhcC-------------------------------------
Confidence 34688999972 1111100 00000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
-|.. +.+... ..... ..+-|+.
T Consensus 202 ---------~~~~----i~~~~~-------------------~~~~~-----------i~~~~~~--------------- 223 (460)
T PRK11776 202 ---------DPVE----VKVEST-------------------HDLPA-----------IEQRFYE--------------- 223 (460)
T ss_pred ---------CCEE----EEECcC-------------------CCCCC-----------eeEEEEE---------------
Confidence 0000 000000 00000 0000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
+....|+..|..+|... ...++||||+....++.+.++|...|+.+..+||.++..+|+.+++.|+++...
T Consensus 224 ----~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--- 294 (460)
T PRK11776 224 ----VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--- 294 (460)
T ss_pred ----eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---
Confidence 01122777888888643 357899999999999999999999999999999999999999999999887665
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+||+|+++++|||++++++||+||+++++..|+||+||++|.|+.- .+|.|++.+
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 8999999999999999999999999999999999999999999753 455555543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=281.99 Aligned_cols=313 Identities=17% Similarity=0.251 Sum_probs=215.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC------CCCEEEEecCch-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND------RGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~------~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
..+.++|.+++..++. +.+.|+..+||+|||+.++..+...+..... ...+|||||+.. ..||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 4688999999987775 7889999999999999987766655433221 113799999855 5789999988
Q ss_pred HCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHH
Q 000047 1162 WAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADL 1237 (2693)
Q Consensus 1162 waP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraL 1237 (2693)
|+. .++++.++|......+.. .....++|+|+|++.|........+...++++|||||||+|..... .+...+
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il 174 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMM---KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHH---HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHH
Confidence 764 456666666554333221 2246789999999999765544455566789999999999876442 223334
Q ss_pred Hhhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1238 KHYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1238 k~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
..+.. ...|++|||.-. .+.++ ... ++..|....
T Consensus 175 ~~l~~~~q~l~~SAT~~~-~~~~l---~~~--------------~~~~~~~i~--------------------------- 209 (456)
T PRK10590 175 AKLPAKRQNLLFSATFSD-DIKAL---AEK--------------LLHNPLEIE--------------------------- 209 (456)
T ss_pred HhCCccCeEEEEeCCCcH-HHHHH---HHH--------------HcCCCeEEE---------------------------
Confidence 44433 346889999621 11111 100 000000000
Q ss_pred hhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1317 PFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+.++ ........ .+..
T Consensus 210 --~~~~------~~~~~~i~~~~~~------------------------------------------------------- 226 (456)
T PRK10590 210 --VARR------NTASEQVTQHVHF------------------------------------------------------- 226 (456)
T ss_pred --Eecc------cccccceeEEEEE-------------------------------------------------------
Confidence 0000 00000000 0000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
+....|.++|..++.. ...+++||||.....++.|.++|...|+....+||.++.++|..+++.|+++
T Consensus 227 ----------~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g 294 (456)
T PRK10590 227 ----------VDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG 294 (456)
T ss_pred ----------cCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0001234444554442 2357899999999999999999999999999999999999999999999887
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
... +||+|+++++|||++++++||+||+++++..|+|++||++|.|.+..+.+
T Consensus 295 ~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 295 DIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred CCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 655 89999999999999999999999999999999999999999997655443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=278.90 Aligned_cols=317 Identities=16% Similarity=0.210 Sum_probs=218.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCCEEEEecCc-hHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGPFLVVVPSS-VLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP~LIVVPtS-LL~QW~eEfeKwa 1163 (2693)
..++++|.+++..++. +.+.|+...||+|||+.++..+...+... .....+|||+|+. |..||.+.+..|+
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4688999999988774 77899999999999999876655443221 1123589999986 4577888887775
Q ss_pred C--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHh
Q 000047 1164 P--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKH 1239 (2693)
Q Consensus 1164 P--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~ 1239 (2693)
. ++.+..+.|....... .......++|+|+|++.|........+....+++|||||||+|..... .+...+..
T Consensus 98 ~~~~~~v~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~ 174 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNH---AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAE 174 (434)
T ss_pred ccCCcEEEEEECCCCHHHH---HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh
Confidence 3 4677777776543321 123345789999999999876655556666789999999999976442 22222222
Q ss_pred hc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1240 YQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1240 Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
+. ....+++|||+-...+.+ |..++..
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~---------------------------------- 202 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQD------------------FAERLLN---------------------------------- 202 (434)
T ss_pred CccccEEEEEEeecCHHHHHH------------------HHHHHcc----------------------------------
Confidence 22 234588999973211111 1111100
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
-| .. +.+..... . +....|.+..
T Consensus 203 ------------~~--~~--i~~~~~~~------------------~-----------~~~i~~~~~~------------ 225 (434)
T PRK11192 203 ------------DP--VE--VEAEPSRR------------------E-----------RKKIHQWYYR------------ 225 (434)
T ss_pred ------------CC--EE--EEecCCcc------------------c-----------ccCceEEEEE------------
Confidence 00 00 00000000 0 0000000000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.-....|..+|..++.. ....++||||.....++.|..+|...|+....++|.++..+|..+++.|+++...
T Consensus 226 ------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~ 297 (434)
T PRK11192 226 ------ADDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN 297 (434)
T ss_pred ------eCCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc
Confidence 00012366777777753 2467999999999999999999999999999999999999999999999887665
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|+++++|||++++++||+||+++++..|+||+||++|.|.+..+.++
T Consensus 298 ---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 298 ---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred ---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 899999999999999999999999999999999999999999976554444
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=278.95 Aligned_cols=319 Identities=17% Similarity=0.266 Sum_probs=217.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-------CCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND-------RGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-------~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..++++|.+++..++. +.+.|++..||+|||+.++..+...+..... ....|||+|+.. ..||.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4689999999987664 8899999999999999887655544333211 234799999855 577888888
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNAD 1236 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--Klsra 1236 (2693)
.++. ++.+..++|........ ..+....++|+|+|+++|........+...++++|||||||++.+... .+.+.
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i 261 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQI 261 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHH
Confidence 7754 46677777754332221 223345789999999999765544444555678999999999976432 23333
Q ss_pred HHhhc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1237 LKHYQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1237 Lk~Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+..+. ....+++|||... ++.++.. .|...
T Consensus 262 ~~~~~~~~~~q~i~~SAT~~~-~~~~~~~-----------------~~~~~----------------------------- 294 (475)
T PRK01297 262 IRQTPRKEERQTLLFSATFTD-DVMNLAK-----------------QWTTD----------------------------- 294 (475)
T ss_pred HHhCCCCCCceEEEEEeecCH-HHHHHHH-----------------HhccC-----------------------------
Confidence 44332 2356888888521 1111100 00000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
|. .+.+... ...... + . .|-+
T Consensus 295 ------------------~~----~v~~~~~---------------~~~~~~---~-------~---~~~~--------- 315 (475)
T PRK01297 295 ------------------PA----IVEIEPE---------------NVASDT---V-------E---QHVY--------- 315 (475)
T ss_pred ------------------CE----EEEeccC---------------cCCCCc---c-------c---EEEE---------
Confidence 00 0000000 000000 0 0 0000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+....|..+|..+|.. ....++||||+....++.|.++|...|+.+..++|.++.++|.++++.|+
T Consensus 316 -----------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr 382 (475)
T PRK01297 316 -----------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR 382 (475)
T ss_pred -----------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh
Confidence 01123466677777653 33579999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+++.. +||+|+++++|||+.++++||+||++++...|+|++||++|.|+.-. ++.|+..
T Consensus 383 ~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 383 EGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred CCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 87765 79999999999999999999999999999999999999999997543 3444443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=275.35 Aligned_cols=318 Identities=15% Similarity=0.193 Sum_probs=217.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..+.+.|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+.. ..||.+++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 3677899999987765 789999999999999998766554332211 1224799999855 478888887
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNAD 1236 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--Klsra 1236 (2693)
.++. ++++..++|........ ......++|+|+|++.|........+...++.+|||||||+|.+... .+...
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i 181 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWL 181 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHH
Confidence 7753 46777777654433221 12235689999999999876655566667889999999999865432 22222
Q ss_pred HHhhcc---cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1237 LKHYQS---SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1237 Lk~Lka---~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+..+.. ...+++|||.-. .+.++. ..++.
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~------------------------------ 213 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMN------------------------------ 213 (423)
T ss_pred HHhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCC------------------------------
Confidence 333321 223677887521 000000 00000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
-|... .+. ... ..... ..+.++.
T Consensus 214 -----------------~p~~i--~v~-~~~-------------------~~~~~-----------i~~~~~~------- 236 (423)
T PRK04837 214 -----------------NPEYV--EVE-PEQ-------------------KTGHR-----------IKEELFY------- 236 (423)
T ss_pred -----------------CCEEE--EEc-CCC-------------------cCCCc-----------eeEEEEe-------
Confidence 01000 000 000 00000 0000000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.....|+.+|..++.. ....++||||+....++.|..+|...|+.+..++|.++.++|.++++.|+
T Consensus 237 ------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~ 302 (423)
T PRK04837 237 ------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT 302 (423)
T ss_pred ------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH
Confidence 0112377777777764 24679999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+++.. +||+|+++++|||++++++||+||+|+++..|+||+||++|.|+.-. ++.|++.
T Consensus 303 ~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 303 RGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred cCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 88766 89999999999999999999999999999999999999999996644 3444443
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=277.82 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=215.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..++|+|.+++..++. +.+.|+..+||+|||+.++..+.. ..+..|||+|+ +|+.+|...+..+. +.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 5799999999998775 678999999999999877544432 13458999998 55677888887654 44
Q ss_pred EEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhcc-CCCcc-cccCccEEEEccccccccccch---HHH----H
Q 000047 1168 KIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKH-DRPKL-SKIQWHYIIIDEGHRIKNASCK---LNA----D 1236 (2693)
Q Consensus 1168 VIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~-Dr~~L-~kikWd~VIIDEAHRIKN~sSK---lsr----a 1236 (2693)
...+.+... .+..++ ..+..+.++|+++|++.+.... ....+ ...++.+|||||||++..+... .+. .
T Consensus 78 ~~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 555555432 222232 3345677999999999986532 11123 4457899999999999765422 112 2
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
...+.....++||||+-.....++...+.+-.|.++.. .|.
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~--------------------------------- 197 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD--------------------------------- 197 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC---------------------------------
Confidence 23345567899999996555555555444332222100 000
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.|.. ...+..
T Consensus 198 --------------r~nl-~~~v~~------------------------------------------------------- 207 (470)
T TIGR00614 198 --------------RPNL-YYEVRR------------------------------------------------------- 207 (470)
T ss_pred --------------CCCc-EEEEEe-------------------------------------------------------
Confidence 0000 000000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.....+..|.++|.+ ...+.++||||.....++.|.++|...|+.+..+||+++.++|..+++.|..+.
T Consensus 208 ----------~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~ 276 (470)
T TIGR00614 208 ----------KTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE 276 (470)
T ss_pred ----------CCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC
Confidence 000012223333332 234667899999999999999999999999999999999999999999998776
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.. +|++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+|
T Consensus 277 ~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 277 IQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred Cc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 65 799999999999999999999999999999999999999999988776555
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=280.07 Aligned_cols=320 Identities=17% Similarity=0.220 Sum_probs=218.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-------NDRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..++|+|.+++..++. +.+.|+..+||+|||+.++..+...+... ......|||+|+.. ..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 4789999999988874 78999999999999998876554332211 12234799999865 477888888
Q ss_pred HHCCC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHH
Q 000047 1161 FWAPR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNAD 1236 (2693)
Q Consensus 1161 KwaPs--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsra 1236 (2693)
.+... +++..+.|......... . ...+++|+|+|++.|.....+..+...+..+|||||||+|.... ..+.+.
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~--~-l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY--R-IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH--H-hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 77643 44444444433222221 1 23568999999999876655555556678999999999997643 233444
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
+..+.....+++|||.-. .+.. +..++..
T Consensus 295 ~~~l~~~q~l~~SATl~~-~v~~------------------l~~~~~~-------------------------------- 323 (518)
T PLN00206 295 FQALSQPQVLLFSATVSP-EVEK------------------FASSLAK-------------------------------- 323 (518)
T ss_pred HHhCCCCcEEEEEeeCCH-HHHH------------------HHHHhCC--------------------------------
Confidence 555666677899999621 1110 1111100
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
... .+.+.- .. ..... +.+ -++
T Consensus 324 ----------------~~~--~i~~~~-----------------~~-~~~~~-------v~q----~~~----------- 345 (518)
T PLN00206 324 ----------------DII--LISIGN-----------------PN-RPNKA-------VKQ----LAI----------- 345 (518)
T ss_pred ----------------CCE--EEEeCC-----------------CC-CCCcc-------eeE----EEE-----------
Confidence 000 000000 00 00000 000 000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
.+....|...|.++|........++|||+.....++.|...|.. .|+++..+||+++.++|..+++.|+++
T Consensus 346 --------~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G 417 (518)
T PLN00206 346 --------WVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG 417 (518)
T ss_pred --------eccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC
Confidence 01112355667777766555567899999999999999999974 699999999999999999999999988
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
..+ +||+|+++++|||+..+++||+||+|.+...|+||+||++|.|..- .++.|++.
T Consensus 418 ~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~ 474 (518)
T PLN00206 418 EVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNE 474 (518)
T ss_pred CCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEch
Confidence 766 8999999999999999999999999999999999999999999653 44445554
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=274.39 Aligned_cols=440 Identities=19% Similarity=0.188 Sum_probs=259.7
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs 1165 (2693)
....||+||.+.+.-.+ +.|.|+|.+||+|||++|+-++..+++.... +.+++.+|+.- +.|....|..++-.
T Consensus 59 ~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred CcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc
Confidence 34689999999887665 6899999999999999998888888877665 66999999854 56666777777644
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccc-cCccEEEEccccccccccchHHHHHHhh----
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSK-IQWHYIIIDEGHRIKNASCKLNADLKHY---- 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~k-ikWd~VIIDEAHRIKN~sSKlsraLk~L---- 1240 (2693)
-.+....|+...+... .......+|+|.|++.+.+.+....... -.|.+||||||||..... .+...++.|
T Consensus 133 ~~~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~-~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH-PYNNIMREYLDLK 208 (746)
T ss_pred ccceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccc-cHHHHHHHHHHhh
Confidence 5555555553222111 1223567999999999999776666555 679999999999974322 223333222
Q ss_pred -cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 -QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 -ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
...+.|+|||||= ++..+..+.+.=|... +.-... .-...++............+. .+......+|..+++|++
T Consensus 209 ~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~--ssi~~~y~~lr~~~~i~v~~~-~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 209 NQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTE--SSIKSNYEELREHVQIPVDLS-LCERDIEDPFGMIIEPLL 283 (746)
T ss_pred hccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchh--hhhhhhHHHHhccCcccCcHH-HhhhhhhhhHHHHHHHHH
Confidence 2336799999997 7777777666655444 211100 000111111111111111111 122234556777777776
Q ss_pred hhhhHhHHhhcCccceeEeeecccc-------------HHHH------HHHHHHHHHhhccCCCCCcchhHHHHHHHHhh
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEAS-------------AYQK------LLMKRVEENLGSIGNSKGRSVHNSVMELRNIC 1380 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLS-------------a~Qk------~LYk~Lee~l~si~~sk~rslln~LmqLRKIC 1380 (2693)
.+-... .|.+....-...... .-|+ .+++.....+.. .+-...+.+..+....
T Consensus 284 ~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~----~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 284 QQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS----DGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHhc----CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh----cchhhHHHHhhhhhhc
Confidence 443211 111111000000000 0011 001100000000 0000111111111111
Q ss_pred CCccccc------------hhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhc--CCCeEEEEEcchHHHHHHHHHH
Q 000047 1381 NHPYLSQ------------LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1381 nHPyL~~------------~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLka--tGhKVLIFSQft~tLDILed~L 1446 (2693)
..-++.. ...+....+ .+.....-...+|++.|.++|.+... ...|+|||+.++..++.|..+|
T Consensus 356 ~e~~~~k~~~~~~e~~~~~~~~~~m~~~--~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l 433 (746)
T KOG0354|consen 356 EEVALKKYLKLELEARLIRNFTENMNEL--EHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWL 433 (746)
T ss_pred cccchhHHHHHHhcchhhHHHHHHHHhh--hhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHH
Confidence 0000000 000000000 00001111346799999999987754 4689999999999999999998
Q ss_pred h---hcCCeEEEEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhh
Q 000047 1447 T---FKQYRYLRLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1447 ~---~rGikylRLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQ 1515 (2693)
. ..|++...+-| ++++.+.+++|++|++|+.+ +||+|.+|.||||+..||.||.||..-||...+|
T Consensus 434 ~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQ 510 (746)
T KOG0354|consen 434 LQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQ 510 (746)
T ss_pred HhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHH
Confidence 7 23455555555 58889999999999998877 8999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHHHHHHH-HHHHHHHHhhhcc
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEEQVRAS-AEHKLGVANQSIT 1560 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEEkIler-aekKl~Li~kVIq 1560 (2693)
|+|| +|.-+. +++-|.+ +.+..-+++ ...|..+.+..|.
T Consensus 511 rrGR-gRa~ns---~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 511 RRGR-GRARNS---KCVLLTT--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred Hhcc-ccccCC---eEEEEEc--chhHHHHHHHHHhHHHHHHHHHH
Confidence 9999 775444 4444444 444443333 4556666665554
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=275.13 Aligned_cols=315 Identities=20% Similarity=0.308 Sum_probs=225.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCC-EEEEecCchH-HHHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGP-FLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP-~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.|.|..+...++. +.++|..+.||+|||+..+..+...+... ...+| +||++|+..| .|...++..+
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 566778888777776 88999999999999998876554444431 22345 8999999777 5578888888
Q ss_pred CCCCc--EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 APRIH--KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aPsLk--VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
...+. .++++|......++. ....+++|+|+|+.+|+..++...+...++.|+|+|||++|.... .+..+.+.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 76544 555555443333322 224679999999999999888888888899999999999997644 45556666
Q ss_pred hh-cccc-cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1239 HY-QSSH-RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1239 ~L-ka~~-RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
.+ .+.+ .|+.|||-- .| ++.+-.
T Consensus 266 ~i~~~~rQtlm~saTwp--------------------------~~-----------------------------v~~lA~ 290 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWP--------------------------KE-----------------------------VRQLAE 290 (519)
T ss_pred hcCCCcccEEEEeeecc--------------------------HH-----------------------------HHHHHH
Confidence 66 3332 455555530 00 011111
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.|+ . .|..+... .. +.......+.++-..|.
T Consensus 291 ~fl---------~-~~~~i~ig-~~-----------------------~~~~a~~~i~qive~~~--------------- 321 (519)
T KOG0331|consen 291 DFL---------N-NPIQINVG-NK-----------------------KELKANHNIRQIVEVCD--------------- 321 (519)
T ss_pred HHh---------c-CceEEEec-ch-----------------------hhhhhhcchhhhhhhcC---------------
Confidence 111 1 11111110 00 00001111122222221
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
..+|...|..+|.++. ..+.||||||+....++.|..+|...+|+.+.|||..++.+|..+++.|+++
T Consensus 322 -----------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 322 -----------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred -----------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC
Confidence 2358888888888876 4567999999999999999999999999999999999999999999999988
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+.+ +||+|+++++|||+.++|+||+||+|-|...|+||+||++|.|++-..
T Consensus 391 ~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 391 KSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred Ccc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 877 899999999999999999999999999999999999999998876443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=281.46 Aligned_cols=314 Identities=16% Similarity=0.252 Sum_probs=213.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..+.|.|.++|..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+.. ..|+.+++.
T Consensus 30 ~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4688999999998875 889999999999999998776654432211 1235899999855 578988998
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLNA 1235 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Klsr 1235 (2693)
+|.. ++++..++|......+ .......++|+|+|++.|....... .+....+++|||||||+|..... .+..
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q---~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~ 182 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQ---RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRF 182 (572)
T ss_pred HHhccCCceEEEEECCCCHHHH---HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHH
Confidence 8865 3566666665443221 1122357899999999987654332 34445678999999999865332 2223
Q ss_pred HHHhhc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1236 DLKHYQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1236 aLk~Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.+..+. ....|++|||.-. . +..++. .++..
T Consensus 183 il~~lp~~~~~q~ll~SATl~~-~---v~~l~~--------------~~l~~---------------------------- 216 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSH-R---VLELAY--------------EHMNE---------------------------- 216 (572)
T ss_pred HHHhcccccCceEEEEeCCccH-H---HHHHHH--------------HHhcC----------------------------
Confidence 333333 2345788888521 1 111100 00000
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
|... ++.... ... . .+ .|-+++
T Consensus 217 -------------------p~~i--~v~~~~-----------------~~~---~-------~i----~q~~~~------ 238 (572)
T PRK04537 217 -------------------PEKL--VVETET-----------------ITA---A-------RV----RQRIYF------ 238 (572)
T ss_pred -------------------CcEE--Eecccc-----------------ccc---c-------ce----eEEEEe------
Confidence 0000 000000 000 0 00 000000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
.....|+.+|..+|.. ..+.++||||+....++.|.++|...|+.+..|||.++..+|.++++.|
T Consensus 239 -------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 239 -------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred -------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 0011255666666653 3478999999999999999999999999999999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+++... +||+|+++++|||+..+++||+||.+|++..|+||+||++|.|..-.+.+
T Consensus 304 r~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 304 QKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 887665 89999999999999999999999999999999999999999997654433
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=274.38 Aligned_cols=314 Identities=14% Similarity=0.189 Sum_probs=219.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwa---P 1164 (2693)
.++.|+|.+++.+++. +.+.|+...||+|||++++..+...+........+|||||+. |..||.++|.+|. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4789999999988775 778999999999999987655554443333333479999985 4588988887764 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka 1242 (2693)
++.++.++|......++. ......+|||+|++.|...+.+..+...++.+|||||||.|.+... .+...+..+..
T Consensus 103 ~i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~ 179 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 (629)
T ss_pred CceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC
Confidence 677777777654332221 1235789999999999876666566666789999999999866542 23344445543
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...+++|||.- ..+.++. ..| +
T Consensus 180 ~~q~llfSAT~p-~~i~~i~------------------~~~------------------------------------l-- 202 (629)
T PRK11634 180 GHQTALFSATMP-EAIRRIT------------------RRF------------------------------------M-- 202 (629)
T ss_pred CCeEEEEEccCC-hhHHHHH------------------HHH------------------------------------c--
Confidence 34578888851 0000000 000 0
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
.......+.... .... ...+-|+
T Consensus 203 ----------~~~~~i~i~~~~--------------------~~~~-----------~i~q~~~---------------- 225 (629)
T PRK11634 203 ----------KEPQEVRIQSSV--------------------TTRP-----------DISQSYW---------------- 225 (629)
T ss_pred ----------CCCeEEEccCcc--------------------ccCC-----------ceEEEEE----------------
Confidence 000000000000 0000 0000010
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.+....|++.|.++|.. ....++||||.....++.|..+|...||....|+|.+++.+|..++++|+.+..+
T Consensus 226 ---~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--- 297 (629)
T PRK11634 226 ---TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--- 297 (629)
T ss_pred ---EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---
Confidence 01112377778887764 2356899999999999999999999999999999999999999999999887765
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|+++++|||++.+++||+||+++++..|+||+||++|.|..-.+.+
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 89999999999999999999999999999999999999999997654333
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=264.92 Aligned_cols=321 Identities=17% Similarity=0.262 Sum_probs=216.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--s 1165 (2693)
..+.++|.+++..++. +.+.|+..+||+|||++++..+...+........+|||+|...| .||...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 4689999999998775 77899999999999998876666655443334458999998554 667777766653 3
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka- 1242 (2693)
+.+..+.|....+... .......+|+|+|++.+........+...++++|||||||++.... ..+...++.+..
T Consensus 125 ~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~ 201 (401)
T PTZ00424 125 VRCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPD 201 (401)
T ss_pred ceEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCC
Confidence 4455555654433222 1123457999999999876554445556678999999999986533 234444555533
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
...+++|||+-. .+.+ +...| + +
T Consensus 202 ~~~i~~SAT~~~-~~~~------------------~~~~~------------------------------------~-~- 224 (401)
T PTZ00424 202 VQVALFSATMPN-EILE------------------LTTKF------------------------------------M-R- 224 (401)
T ss_pred cEEEEEEecCCH-HHHH------------------HHHHH------------------------------------c-C-
Confidence 456889999621 1110 00000 0 0
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
-|.. ..+.. . .. ... .++ +-++. .
T Consensus 225 --------~~~~--~~~~~--~---------------~~---~~~-------~~~----~~~~~-~-------------- 248 (401)
T PTZ00424 225 --------DPKR--ILVKK--D---------------EL---TLE-------GIR----QFYVA-V-------------- 248 (401)
T ss_pred --------CCEE--EEeCC--C---------------Cc---ccC-------Cce----EEEEe-c--------------
Confidence 0000 00000 0 00 000 000 00000 0
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.....++..|..++..+ ...++||||.....++.+..+|...++.+..+||+++.++|..+++.|+.+... +
T Consensus 249 ---~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---v 320 (401)
T PTZ00424 249 ---EKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---V 320 (401)
T ss_pred ---ChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---E
Confidence 00011344555555432 357899999999999999999999999999999999999999999999887765 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|++|+++++|||++++++||+||++++...|.|++||++|.|.. -.+|.|++.+.
T Consensus 321 LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 321 LITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred EEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999854 44566666543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=275.02 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+||+|.+++..++. +.+.|++.+||.|||+.++..+. + ..+..|||+|. +|+.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 5799999999988775 77899999999999998764432 2 13458999997 5668888888775 355
Q ss_pred EEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-------hHHHHHH
Q 000047 1168 KIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-------KLNADLK 1238 (2693)
Q Consensus 1168 VIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-------KlsraLk 1238 (2693)
+..+.+... ++..++ ..+..+.++|++.|++.+........+...++++|||||||++..+.. ++.....
T Consensus 80 ~~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 666655432 222222 334567899999999998654333455667899999999999865432 2222233
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.....++||||+-.....+++..|.+-.+..|.. .|
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~------------------------------------ 196 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF------------------------------------ 196 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC------------------------------------
Confidence 444555899999996555555544433222211100 00
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
..|.....+
T Consensus 197 -----------~r~nl~~~v------------------------------------------------------------ 205 (591)
T TIGR01389 197 -----------DRPNLRFSV------------------------------------------------------------ 205 (591)
T ss_pred -----------CCCCcEEEE------------------------------------------------------------
Confidence 000000000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.....+...|.++|... .+.++||||.....++.|.++|...|+.+..+||+++.++|..+++.|..+...
T Consensus 206 -------~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~ 276 (591)
T TIGR01389 206 -------VKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK 276 (591)
T ss_pred -------EeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 00011334444455432 267899999999999999999999999999999999999999999999887654
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|.++|+|||++++++||+||+++|...|.|++||++|.|....+.+
T Consensus 277 ---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 277 ---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred ---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 89999999999999999999999999999999999999999997666543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=274.31 Aligned_cols=305 Identities=18% Similarity=0.173 Sum_probs=212.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..++|+|.+++..++. +.++|+..+||.|||++++..+. +. .+.+|||+|. +|+.+|...|.... +.
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999987764 78999999999999987754443 21 3458999997 55677888887653 44
Q ss_pred EEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch---HHHHH----H
Q 000047 1168 KIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK---LNADL----K 1238 (2693)
Q Consensus 1168 VIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK---lsraL----k 1238 (2693)
...+.+.... ....+ ..+..+..+++++|++.+........+...++++|||||||++-.+... .++.+ .
T Consensus 92 ~~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~ 170 (607)
T PRK11057 92 AACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (607)
T ss_pred EEEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH
Confidence 5555444322 22222 2344567899999999987533233455567899999999998764321 12223 2
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.....++||||+-.....+++..+.+..|.++.. .|.
T Consensus 171 ~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~----------------------------------- 209 (607)
T PRK11057 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD----------------------------------- 209 (607)
T ss_pred hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC-----------------------------------
Confidence 334556799999986555555554443322211100 000
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
.|.. .+.+
T Consensus 210 ------------r~nl-~~~v----------------------------------------------------------- 217 (607)
T PRK11057 210 ------------RPNI-RYTL----------------------------------------------------------- 217 (607)
T ss_pred ------------CCcc-eeee-----------------------------------------------------------
Confidence 0000 0000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+....++..|..++.. ..+.++||||..+..++.+...|...|+.+..+||+++.++|.++++.|..+...
T Consensus 218 -------~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 218 -------VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred -------eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 0000012223333332 3467999999999999999999999999999999999999999999999887665
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+
T Consensus 289 ---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 289 ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred ---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 79999999999999999999999999999999999999999997765443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-26 Score=265.34 Aligned_cols=372 Identities=22% Similarity=0.318 Sum_probs=247.4
Q ss_pred cccccccccchhcccccccccccchhHHhHHHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCC
Q 000047 1031 NEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQL 1110 (2693)
Q Consensus 1031 ~e~de~~~~sv~E~~e~a~e~ede~~~~k~~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~l 1110 (2693)
..|.+.+...+...|....+.++.+..++.|.+....-..+ .-+++.-.. ...|.|.+|+.-+++ ++
T Consensus 142 r~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L-~~lk~KGI~--------~PTpIQvQGlPvvLs----GR 208 (610)
T KOG0341|consen 142 RKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLL-RGLKKKGIV--------HPTPIQVQGLPVVLS----GR 208 (610)
T ss_pred HHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHH-HHHHhcCCC--------CCCceeecCcceEee----cC
Confidence 34555555556667788888888888888877654332221 112222222 334568889887776 77
Q ss_pred CeEEEcCCCCChHHHHHHHHHHH-HHh------cCCCCCE-EEEecCchHHHHHHH-HHHH--------CCCCcEEEEcC
Q 000047 1111 NGILADEMGLGKTVQVIALICYL-MET------KNDRGPF-LVVVPSSVLPGWESE-INFW--------APRIHKIVYCG 1173 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~L-le~------k~~~gP~-LIVVPtSLL~QW~eE-feKw--------aPsLkVIvy~G 1173 (2693)
..|-..-+|+|||++....+..+ ++. ....||+ |||||...|.....+ ++.| +|.++..++.|
T Consensus 209 DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciG 288 (610)
T KOG0341|consen 209 DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIG 288 (610)
T ss_pred ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Confidence 77777789999998765433322 221 1234565 999999877543333 3333 37788888888
Q ss_pred ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcccc-cccccc
Q 000047 1174 PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSSH-RLLLTG 1250 (2693)
Q Consensus 1174 s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~~-RLLLTG 1250 (2693)
....+.++ .....+.+|||+|+.+|+..+.+..+...-+.|+++|||+||-.... -....+..|++.+ .||+||
T Consensus 289 G~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSA 365 (610)
T KOG0341|consen 289 GVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSA 365 (610)
T ss_pred CccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeec
Confidence 77766543 34457899999999999988888788888899999999999966442 1222222333322 244444
Q ss_pred cCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhc
Q 000047 1251 TPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENE 1330 (2693)
Q Consensus 1251 TPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVeke 1330 (2693)
|-
T Consensus 366 TM------------------------------------------------------------------------------ 367 (610)
T KOG0341|consen 366 TM------------------------------------------------------------------------------ 367 (610)
T ss_pred cc------------------------------------------------------------------------------
Confidence 42
Q ss_pred CccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhccc
Q 000047 1331 LPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 1410 (2693)
Q Consensus 1331 LP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~Sg 1410 (2693)
|.|+..+. ...|.+-+.-+++..+ ..-++.+.++ .+++..+
T Consensus 368 -P~KIQ~FA-------kSALVKPvtvNVGRAG----AAsldViQev---------------------------EyVkqEa 408 (610)
T KOG0341|consen 368 -PKKIQNFA-------KSALVKPVTVNVGRAG----AASLDVIQEV---------------------------EYVKQEA 408 (610)
T ss_pred -cHHHHHHH-------HhhcccceEEeccccc----ccchhHHHHH---------------------------HHHHhhh
Confidence 11110000 0000000000111111 1112222111 1233445
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
|+.+|.+.| .++..+|||||....-+|.|.+||-.+|+..+.|||+.++++|...|..|+.+..+ +|++|++++
T Consensus 409 KiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVAS 482 (610)
T KOG0341|consen 409 KIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVAS 482 (610)
T ss_pred hhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchh
Confidence 666666655 56778999999999999999999999999999999999999999999999999888 899999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
.|||++++.+||+||+|-...+|.+||||++|-|.+-- .-.||..++-|..
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esv 533 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESV 533 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHH
Confidence 99999999999999999999999999999999997643 2334555544433
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=258.61 Aligned_cols=425 Identities=18% Similarity=0.233 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccccccccchhcccccccccccchhHHhHHHHhhhHHHHhhhcc
Q 000047 1000 RVNKLLKETEKYLQKLGSKLQEAKSMASHFEN----EMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSI 1075 (2693)
Q Consensus 1000 rL~~LL~QTe~yl~~L~~~v~~~k~~~~~~e~----e~de~~~~sv~E~~e~a~e~ede~~~~k~~~e~~~~yy~lah~i 1075 (2693)
|.....+|.+..+.+....-....|+..||.. +|.+.++..+.|.|........-+.+...|.+.......+. -|
T Consensus 182 ~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~-~I 260 (673)
T KOG0333|consen 182 RTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLS-VI 260 (673)
T ss_pred cchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHH-HH
Confidence 44556677777777777776777788888854 67777788888888888888777788888877764333221 12
Q ss_pred ccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh--------cCCCCC-EEEE
Q 000047 1076 KESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET--------KNDRGP-FLVV 1146 (2693)
Q Consensus 1076 kEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~--------k~~~gP-~LIV 1146 (2693)
.+.- ....-|.|+.++--++. +.+.|+..|+|+|||...+--|.-.+.. ....+| .+|+
T Consensus 261 ~~~~--------y~eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 261 KKPG--------YKEPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred HhcC--------CCCCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 2221 22445679998875554 7888999999999996555443333322 223355 4899
Q ss_pred ecCchHH-HHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccc
Q 000047 1147 VPSSVLP-GWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223 (2693)
Q Consensus 1147 VPtSLL~-QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEA 1223 (2693)
+|+..|. |..+|-.+|.- +++++.+.|...-..+-|+ ...+.+|+|.|+..|+..+....|....+.|||+|||
T Consensus 329 aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq---ls~gceiviatPgrLid~Lenr~lvl~qctyvvldea 405 (673)
T KOG0333|consen 329 APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ---LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA 405 (673)
T ss_pred chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh---hhccceeeecCchHHHHHHHHHHHHhccCceEeccch
Confidence 9997775 46778777753 4677777776543332222 2357899999999999988888899999999999999
Q ss_pred cccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHH
Q 000047 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEE 1303 (2693)
Q Consensus 1224 HRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe 1303 (2693)
.+|..... ...+.=+|+.-|..|--. +.+++..|
T Consensus 406 drmiDmgf---------E~dv~~iL~~mPssn~k~---------------~tde~~~~---------------------- 439 (673)
T KOG0333|consen 406 DRMIDMGF---------EPDVQKILEQMPSSNAKP---------------DTDEKEGE---------------------- 439 (673)
T ss_pred hhhhcccc---------cHHHHHHHHhCCccccCC---------------CccchhhH----------------------
Confidence 99976542 111111222223222100 00011100
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh--ccCCCCCcchhHHHHHHHHhhC
Q 000047 1304 NLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG--SIGNSKGRSVHNSVMELRNICN 1381 (2693)
Q Consensus 1304 ~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~--si~~sk~rslln~LmqLRKICn 1381 (2693)
.++ +..|.-. ---.+...+...|.+.-..|.+.+..... .++.... +
T Consensus 440 -----~~~---~~~~~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk--------------~ 488 (673)
T KOG0333|consen 440 -----ERV---RKNFSSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK--------------P 488 (673)
T ss_pred -----HHH---Hhhcccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC--------------C
Confidence 011 1111100 00011223334455554444444322110 0110000 0
Q ss_pred CccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 1461 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS 1461 (2693)
+|.+-+ .-..+..+.|+..|.++|... ...++|||.+..+.+|.|.+.|.+.||++++|||+-+
T Consensus 489 ~~rveQ--------------~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~ 552 (673)
T KOG0333|consen 489 TPRVEQ--------------KVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKS 552 (673)
T ss_pred ccchhe--------------EEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCcc
Confidence 111100 001234466899999999875 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++|+.++..|+.+..+ +|++|+++|+|||++++.+||+||+..+...|.+||||++|.|+.-.+ ..|++..
T Consensus 553 qeQRe~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 553 QEQRENALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 99999999999998887 899999999999999999999999999999999999999999976543 3444543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=263.55 Aligned_cols=333 Identities=20% Similarity=0.303 Sum_probs=231.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh-cCCCCC-EEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET-KNDRGP-FLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~-k~~~gP-~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
....|.|..++..++. +.+.|..+.||+|||...+..+...+.. ...... .||++|+..| .|..+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 3567789999987776 7889999999999999887766665542 222222 8999999776 567777777754
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L 1240 (2693)
.++++.++|......+. ..+.. +.+|||.|+.++.....+..|...+..++|+|||++|.+... .+...+..+
T Consensus 126 ~~~~~~~~i~GG~~~~~q~--~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~ 202 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQI--EALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL 202 (513)
T ss_pred cCCccEEEEECCCCHHHHH--HHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC
Confidence 56777777766555544 22223 599999999999988887788888899999999999977632 222333333
Q ss_pred cc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 QS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 ka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.. ...++.|||--. +++. +.+.++
T Consensus 203 p~~~qtllfSAT~~~----~i~~---------------------------------------------------l~~~~l 227 (513)
T COG0513 203 PPDRQTLLFSATMPD----DIRE---------------------------------------------------LARRYL 227 (513)
T ss_pred CcccEEEEEecCCCH----HHHH---------------------------------------------------HHHHHc
Confidence 32 334556666410 0000 000000
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
. -|. . +.+... ... .. ..+ ..+.|+.
T Consensus 228 ---------~-~p~--~--i~v~~~--------------------~~~---~~---~~~-i~q~~~~------------- 253 (513)
T COG0513 228 ---------N-DPV--E--IEVSVE--------------------KLE---RT---LKK-IKQFYLE------------- 253 (513)
T ss_pred ---------c-CCc--E--EEEccc--------------------ccc---cc---ccC-ceEEEEE-------------
Confidence 0 010 0 000000 000 00 000 0011110
Q ss_pred CCCChhhhc-ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1400 HYLPPIVRL-CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1400 ~~l~~Lvr~-SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+.. ..|+.+|..+|..... .++||||.....++.|...|..+|+++..|||++++++|.++++.|+++...
T Consensus 254 ------v~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~ 325 (513)
T COG0513 254 ------VESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325 (513)
T ss_pred ------eCCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 111 1499999999986543 3799999999999999999999999999999999999999999999987766
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||+...++||+||++.++..|+||+||++|.|. .-..+.|++. .-|...+..++..
T Consensus 326 ---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~--~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 326 ---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR--KGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred ---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCC--CCeEEEEeCc-HHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999994 3455666665 2255555555544
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=243.07 Aligned_cols=326 Identities=19% Similarity=0.201 Sum_probs=230.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--sL 1166 (2693)
.+-+.|.+++..++. +..+|.+.+||+|||...+..|..-+-..+..-..||++|+..|.+ ....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 344569999988875 8889999999999999887666543333333334699999988855 5666777643 57
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEcccccccccc--chHHHHHHhhccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~ 1243 (2693)
++.++.|......... ....+.+|+|+|++.|+++.. ...|..-...|+|+|||+++.|.. ..+.+.|+.++..
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8888888877655432 235689999999999998765 344666678899999999998754 3455555555443
Q ss_pred cc-ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1244 HR-LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1244 ~R-LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
++ +|.|||=
T Consensus 236 rqt~LfsATM---------------------------------------------------------------------- 245 (476)
T KOG0330|consen 236 RQTFLFSATM---------------------------------------------------------------------- 245 (476)
T ss_pred ceEEEEEeec----------------------------------------------------------------------
Confidence 33 4555553
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
+..-.+|.....++...+.. ......+..|.+ -|+|
T Consensus 246 ---------------------t~kv~kL~rasl~~p~~v~~---s~ky~tv~~lkQ----~ylf---------------- 281 (476)
T KOG0330|consen 246 ---------------------TKKVRKLQRASLDNPVKVAV---SSKYQTVDHLKQ----TYLF---------------- 281 (476)
T ss_pred ---------------------chhhHHHHhhccCCCeEEec---cchhcchHHhhh----heEe----------------
Confidence 11111111000000000000 001111111111 1222
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
+...-|-.+|..+|.++. |..+||||..-.+.+.+.-+|+..|+....|+|.|++..|..+++.|+++..+ +
T Consensus 282 ---v~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---i 353 (476)
T KOG0330|consen 282 ---VPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---I 353 (476)
T ss_pred ---ccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---E
Confidence 111225567888888654 58999999999999999999999999999999999999999999999887666 8
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
|++|+++++|||++.+|.||+||.|-+-..|++|.||+.|.| +.-.++.||+.-.|| ++++.
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qrI 415 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQRI 415 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHHH
Confidence 999999999999999999999999999999999999999999 566778888874444 44443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=268.31 Aligned_cols=311 Identities=18% Similarity=0.156 Sum_probs=210.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
...|||+|.++|..++. +.++|+...||.|||+.+...+... .+..|||+|+ +|+.++...+... ++
T Consensus 458 ~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~~--GI 525 (1195)
T PLN03137 458 NHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQA--NI 525 (1195)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHhC--CC
Confidence 45899999999998875 8899999999999999876554321 3568999998 4555465555443 45
Q ss_pred cEEEEcCChH--HHHHHHHhh-hhcCCccEEEEcHHHHHhccC-CCcc----cccCccEEEEccccccccccch---HHH
Q 000047 1167 HKIVYCGPPE--ERRRLFKEK-IVHQKFNVLLTTYEYLMNKHD-RPKL----SKIQWHYIIIDEGHRIKNASCK---LNA 1235 (2693)
Q Consensus 1167 kVIvy~Gs~~--eRk~l~ke~-i~~~kfdVVITTYE~Lik~~D-r~~L----~kikWd~VIIDEAHRIKN~sSK---lsr 1235 (2693)
....+.+... ....++... ...+.++||++|++.|..... ...+ ....+.+|||||||++-.+... -++
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 5555555432 222232221 113679999999999863210 0111 1234789999999998765422 122
Q ss_pred H---H-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1236 D---L-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1236 a---L-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
. + ..+.....++||||.-.....|+...|.+..+.+|.. -|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccCc---------------------------
Confidence 2 2 2345566789999986665555555544332221110 0000
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
|.....++. . .
T Consensus 653 --------------------pNL~y~Vv~-k-~----------------------------------------------- 663 (1195)
T PLN03137 653 --------------------PNLWYSVVP-K-T----------------------------------------------- 663 (1195)
T ss_pred --------------------cceEEEEec-c-c-----------------------------------------------
Confidence 000000000 0 0
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
...+..|.++|... ..+...||||..+..++.|..+|...|+....+||+++.++|..++++
T Consensus 664 -----------------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~ 725 (1195)
T PLN03137 664 -----------------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQ 725 (1195)
T ss_pred -----------------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHH
Confidence 00011222222211 124578999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
|..+... +||+|.++|+|||++++++||+||+|.+...|.|++|||+|.|....+..|+
T Consensus 726 F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 726 WSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9887765 7999999999999999999999999999999999999999999887766554
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=252.02 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=203.5
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+.. ...+||++|+..| .||.++|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 47999999999998875433 2467999999999999987666655543 2358999998665 789999999987
Q ss_pred -CCcEEEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc-
Q 000047 1165 -RIHKIVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk- 1241 (2693)
++++.+++|...... ......+..+..+|+|+|+..+... +.-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----~~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----VEFKRLALVIIDEQHRFGVE--QRKKLREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----ccccccceEEEechhhccHH--HHHHHHHhccc
Confidence 478888888653322 2223445567899999999988642 22245789999999997422 1222222222
Q ss_pred --ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1242 --SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1242 --a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
..+.|+|||||+...+. +..+ . +..
T Consensus 384 ~~~~~~l~~SATp~prtl~----l~~~----------------~-------~l~-------------------------- 410 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLA----LTVY----------------G-------DLD-------------------------- 410 (630)
T ss_pred CCCCCEEEEeCCCCcHHHH----HHhc----------------C-------Ccc--------------------------
Confidence 56789999999653221 1000 0 000
Q ss_pred hhhhHhHHhhcCcccee--EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1320 LRRLKHKVENELPEKIE--RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE--~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
..+...+|.... ....+..
T Consensus 411 -----~~~i~~~p~~r~~i~~~~~~~------------------------------------------------------ 431 (630)
T TIGR00643 411 -----TSIIDELPPGRKPITTVLIKH------------------------------------------------------ 431 (630)
T ss_pred -----eeeeccCCCCCCceEEEEeCc------------------------------------------------------
Confidence 000011111000 0000000
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcch--------HHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHH
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT--------RLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGA 1467 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft--------~tLDILed~L~~--rGikylRLDGSTS~eERqe 1467 (2693)
.+...+.+.+.+....+++++|||... ..+..+.+.|.. .++.+..+||.++.++|.+
T Consensus 432 ------------~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 499 (630)
T TIGR00643 432 ------------DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEA 499 (630)
T ss_pred ------------chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHH
Confidence 001122222333334577888888654 233444555543 4788999999999999999
Q ss_pred HHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEE
Q 000047 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1468 iId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
++++|+++..+ +||+|.+.++|||++++++||+||.+. +...+.|+.||++|-|....|.
T Consensus 500 i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 500 VMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99999987766 899999999999999999999999985 6788999999999998655444
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=258.24 Aligned_cols=328 Identities=20% Similarity=0.200 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC-----CCCCEEEEecCchH-HHHHHH---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN-----DRGPFLVVVPSSVL-PGWESE--- 1158 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~-----~~gP~LIVVPtSLL-~QW~eE--- 1158 (2693)
..|+|+|.+++..+.. +.++|++.+||+|||+.++..+.. ++.... ....+|+|+|+..| .++...
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987654 789999999999999998765544 332211 12238999998555 555543
Q ss_pred ----HHHHC-------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc--ccCccEEEEccccc
Q 000047 1159 ----INFWA-------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHR 1225 (2693)
Q Consensus 1159 ----feKwa-------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~--kikWd~VIIDEAHR 1225 (2693)
+..|+ +.+++.+++|+.....+. .......+|+|||++.+........+. ..+.++|||||+|.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~ 183 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS 183 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh
Confidence 33443 367788888875443221 122346899999999986433222221 23568999999999
Q ss_pred ccccc--chHHHHHHh---h--cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhh
Q 000047 1226 IKNAS--CKLNADLKH---Y--QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEAL 1298 (2693)
Q Consensus 1226 IKN~s--SKlsraLk~---L--ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~ 1298 (2693)
+.+.. ..+...+.+ + ....+|+||||. .++.++.. ||...... +..
T Consensus 184 l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~------ 236 (876)
T PRK13767 184 LAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEP------ 236 (876)
T ss_pred hccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCC------
Confidence 97532 222223322 2 235679999997 23343322 22110000 000
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 000047 1299 LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRN 1378 (2693)
Q Consensus 1299 LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRK 1378 (2693)
+++.+ +...........+.++...
T Consensus 237 -----------------r~~~i------v~~~~~k~~~i~v~~p~~~--------------------------------- 260 (876)
T PRK13767 237 -----------------RDCEI------VDARFVKPFDIKVISPVDD--------------------------------- 260 (876)
T ss_pred -----------------CceEE------EccCCCccceEEEeccCcc---------------------------------
Confidence 00000 0000000000001010000
Q ss_pred hhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh------cCCe
Q 000047 1379 ICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF------KQYR 1452 (2693)
Q Consensus 1379 ICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~------rGik 1452 (2693)
+.... .......+...|.++...++++||||+.+..++.+...|.. .+..
T Consensus 261 ------l~~~~------------------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 261 ------LIHTP------------------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred ------ccccc------------------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 00000 00001122233334444578999999999999999988875 2467
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-CCcccEEE
Q 000047 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQKRDVLV 1531 (2693)
Q Consensus 1453 ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-GQkKeV~V 1531 (2693)
+..+||+++.++|..+++.|+++... +||+|.++++|||+..+|+||+||+|.+...|+||+||++|- |......+
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~i 393 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRI 393 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEE
Confidence 88999999999999999999887654 799999999999999999999999999999999999999976 44455555
Q ss_pred EE
Q 000047 1532 LR 1533 (2693)
Q Consensus 1532 yR 1533 (2693)
+-
T Consensus 394 i~ 395 (876)
T PRK13767 394 IV 395 (876)
T ss_pred EE
Confidence 53
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=253.46 Aligned_cols=336 Identities=15% Similarity=0.133 Sum_probs=216.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA-PRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa-PsL 1166 (2693)
..|+++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....|||+|+..| .|-..+|.++. .++
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 3699999999987765 889999999999999998776665554332 2358999998666 56777788775 357
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc----ccccCccEEEEccccccccc-cchHHHHHHhh-
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK----LSKIQWHYIIIDEGHRIKNA-SCKLNADLKHY- 1240 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~----L~kikWd~VIIDEAHRIKN~-sSKlsraLk~L- 1240 (2693)
++.+|.|......+. .+ ..+.+|+|||++++....-... ....+.++|||||||++.+. .+.+...+.++
T Consensus 110 ~v~~~~Gdt~~~~r~---~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 110 RPATYDGDTPTEERR---WA-REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEEeCCCCHHHHH---HH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 788888876543221 11 2357999999999864211100 01235689999999999762 33333333332
Q ss_pred --c-----ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1241 --Q-----SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1241 --k-----a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
. ....+++|||- ++..++.. . ++..++....
T Consensus 186 ri~~~~g~~~q~i~~SATi--~n~~~~~~---~--------------l~g~~~~~i~----------------------- 223 (742)
T TIGR03817 186 RLCARYGASPVFVLASATT--ADPAAAAS---R--------------LIGAPVVAVT----------------------- 223 (742)
T ss_pred HHHHhcCCCCEEEEEecCC--CCHHHHHH---H--------------HcCCCeEEEC-----------------------
Confidence 1 23568899995 22333221 1 1111110000
Q ss_pred HhhhhhhhhhHhHHhhcCccce-eEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKI-ERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~Ki-E~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
....|... ...+..+ . + +. + ..... .+
T Consensus 224 --------------~~~~~~~~~~~~~~~p-~-~----~~-~-------~~~~~---------------~~--------- 251 (742)
T TIGR03817 224 --------------EDGSPRGARTVALWEP-P-L----TE-L-------TGENG---------------AP--------- 251 (742)
T ss_pred --------------CCCCCcCceEEEEecC-C-c----cc-c-------ccccc---------------cc---------
Confidence 00001100 0111000 0 0 00 0 00000 00
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--------CCeEEEEeCCCCHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--------QYRYLRLDGHTSGGD 1464 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--------GikylRLDGSTS~eE 1464 (2693)
. .......+..+|..++. .+.++||||+.+..++.|..+|... +.++..++|++..++
T Consensus 252 ---------~-r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 252 ---------V-RRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ---------c-ccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 0 00001124445555543 4789999999999999999888653 567788999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHH
Q 000047 1465 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1465 RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkI 1544 (2693)
|.+++++|+++... +|++|+++++|||+...|+||+||.|-+...|+||+||++|.|+.. .++-++..+..|..+
T Consensus 318 R~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 318 RRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYL 392 (742)
T ss_pred HHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHH
Confidence 99999999887654 7999999999999999999999999999999999999999999654 344455556677665
Q ss_pred HH
Q 000047 1545 RA 1546 (2693)
Q Consensus 1545 le 1546 (2693)
+.
T Consensus 393 ~~ 394 (742)
T TIGR03817 393 VH 394 (742)
T ss_pred Hh
Confidence 44
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=260.75 Aligned_cols=359 Identities=18% Similarity=0.209 Sum_probs=210.4
Q ss_pred CCcchHHHHHHHHHHHHHhhc-CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNN-QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n-~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
+..||+||.++|..+...+.+ +.++||++.||+|||+++++++..++..... +.+|||||. .|+.||..+|..+...
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhcccc
Confidence 367999999999887765543 4678999999999999999999888765443 469999996 6779999999887432
Q ss_pred Cc-EE--EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-----CcccccCccEEEEccccccccc--------
Q 000047 1166 IH-KI--VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-----PKLSKIQWHYIIIDEGHRIKNA-------- 1229 (2693)
Q Consensus 1166 Lk-VI--vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-----~~L~kikWd~VIIDEAHRIKN~-------- 1229 (2693)
.. .+ +|.. .. + ..........|+|+||+.+.+.... ..+....|++||||||||....
T Consensus 490 ~~~~~~~i~~i-~~----L-~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 490 GDQTFASIYDI-KG----L-EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccchhhhhch-hh----h-hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 11 11 1111 10 1 1112234679999999999764321 1134467899999999996311
Q ss_pred ---------cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhH
Q 000047 1230 ---------SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300 (2693)
Q Consensus 1230 ---------sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Ls 1300 (2693)
.++..+.|..|. ..+|+|||||..++ ...|+.|+..+.
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----------------------~~~FG~pv~~Ys---------- 610 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----------------------TEIFGEPVYTYS---------- 610 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----------------------hHHhCCeeEEee----------
Confidence 123334444444 58899999996432 122333221110
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhhHhHHhhcCccceeEeee---cccc-HHHHHHHHHHHHHhhccCCCCCcchhHHHHH
Q 000047 1301 EEENLLIINRLHQVL-RPFVLRRLKHKVENELPEKIERLVR---CEAS-AYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375 (2693)
Q Consensus 1301 eEe~lliI~RLhkVL-rPFLLRRtKkDVekeLP~KiE~vV~---ceLS-a~Qk~LYk~Lee~l~si~~sk~rslln~Lmq 1375 (2693)
+.+.+ ..+++.. ..|-..+..+. +... ..+...|+.....+.. ... ...+......
T Consensus 611 ----------l~eAI~DG~Lv~~-------~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~-~~l-~d~~~~~~~~ 671 (1123)
T PRK11448 611 ----------YREAVIDGYLIDH-------EPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDL-ATL-EDEVDFEVED 671 (1123)
T ss_pred ----------HHHHHhcCCcccC-------cCCEEEEEEeccccccccccchhhhcchhhhhhhh-ccC-cHHHhhhHHH
Confidence 00000 1111100 01111111100 0000 0001111111000000 000 0000000000
Q ss_pred HHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHH-HHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhc----
Q 000047 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD-RLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFK---- 1449 (2693)
Q Consensus 1376 LRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLd-eLL~kLk-atGhKVLIFSQft~tLDILed~L~~r---- 1449 (2693)
+-+. ++ .....+.+. .++..+. ..+.|+||||....+++.|.+.|...
T Consensus 672 ~~~~-------------------------vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 672 FNRR-------------------------VI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred HHHH-------------------------Hh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0000 00 000111111 2222221 12479999999999999888877542
Q ss_pred --CC---eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC
Q 000047 1450 --QY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1450 --Gi---kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG 1524 (2693)
++ .+..++|.++ ++.+++++|.++.. ..+|++++.+++|+|++.+++||++++.-+...|+|++||+.|+.
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~--p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERL--PNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCC--CeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3467999886 68899999976543 368999999999999999999999999999999999999999987
Q ss_pred C---cccEEEEEEE
Q 000047 1525 Q---KRDVLVLRFE 1535 (2693)
Q Consensus 1525 Q---kKeV~VyRLI 1535 (2693)
- |..+.||.++
T Consensus 802 ~~~~K~~f~I~D~v 815 (1123)
T PRK11448 802 PEIGKTHFRIFDAV 815 (1123)
T ss_pred ccCCCceEEEEehH
Confidence 5 5558888764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=250.51 Aligned_cols=304 Identities=18% Similarity=0.234 Sum_probs=202.7
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
.+|.++|.+++..+..-... ..+.||..+||+|||++++..+...+.. ...+||++|+..| .|+.+.|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 47999999999988774432 2467999999999999988766555432 2358999998665 7799999999864
Q ss_pred --CcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1166 --IHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1166 --LkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
+++.+++|.... +...+ ..+..+..+|+|+|+..+... +...+..+|||||+|++.- .....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~-----v~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~ 407 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDD-----VEFHNLGLVIIDEQHRFGV---EQRLALREKG 407 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhccc-----chhcccceEEEechhhhhH---HHHHHHHhcC
Confidence 678888887543 33332 344556799999999888542 2223568999999999832 223333332
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.|+|||||+...+ .+..+ . +.. .
T Consensus 408 ~~~~iL~~SATp~prtl----~~~~~----------------g-------~~~-----------------------~--- 434 (681)
T PRK10917 408 ENPHVLVMTATPIPRTL----AMTAY----------------G-------DLD-----------------------V--- 434 (681)
T ss_pred CCCCEEEEeCCCCHHHH----HHHHc----------------C-------CCc-----------------------e---
Confidence 34678999999953211 10000 0 000 0
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
.+...+|.....+..
T Consensus 435 -----s~i~~~p~~r~~i~~------------------------------------------------------------ 449 (681)
T PRK10917 435 -----SVIDELPPGRKPITT------------------------------------------------------------ 449 (681)
T ss_pred -----EEEecCCCCCCCcEE------------------------------------------------------------
Confidence 000011110000000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHH
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~~r--GikylRLDGSTS~eERqeiId 1470 (2693)
.+....+...+.+.+.+....+++++|||...+ .+..+.+.|... ++++..+||.++.++|.++++
T Consensus 450 ----~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 450 ----VVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred ----EEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHH
Confidence 000001112222333333466889999997542 234455555543 578999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccE
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV 1529 (2693)
+|.++..+ +||+|++.++|||++++++||+||.+. ....+.|+.||++|-|....|
T Consensus 526 ~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 526 AFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 99987765 899999999999999999999999985 568889999999999865444
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=255.46 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=208.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP 1164 (2693)
+.++.++|.+++..+..-...+ .+.||+.+||+|||.+++..+...+..+ ..+||+||+..| .|+...|.+++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4679999999999887644332 4679999999999999876655544432 358999998665 778889988875
Q ss_pred C--CcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 R--IHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 s--LkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
. +++.++.|... ++++++ ..+..+..+|||+|+..+.+. +.-.+..+|||||+|++. ......++.+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~-----v~f~~L~llVIDEahrfg---v~~~~~L~~~ 596 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD-----VKFKDLGLLIIDEEQRFG---VKQKEKLKEL 596 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC-----CCcccCCEEEeecccccc---hhHHHHHHhc
Confidence 4 45555555432 333332 334556799999999766432 222356899999999973 2334455555
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....|+|||||+...+...+ ..+.++.++
T Consensus 597 ~~~~~vL~~SATpiprtl~~~l--~g~~d~s~I----------------------------------------------- 627 (926)
T TIGR00580 597 RTSVDVLTLSATPIPRTLHMSM--SGIRDLSII----------------------------------------------- 627 (926)
T ss_pred CCCCCEEEEecCCCHHHHHHHH--hcCCCcEEE-----------------------------------------------
Confidence 3 45789999999643322100 000000000
Q ss_pred hhhhHhHHhhcCccc---eeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1320 LRRLKHKVENELPEK---IERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1320 LRRtKkDVekeLP~K---iE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
...|.. +... .+...
T Consensus 628 ---------~~~p~~R~~V~t~-v~~~~---------------------------------------------------- 645 (926)
T TIGR00580 628 ---------ATPPEDRLPVRTF-VMEYD---------------------------------------------------- 645 (926)
T ss_pred ---------ecCCCCccceEEE-EEecC----------------------------------------------------
Confidence 000000 0000 00000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
...+...++.. ...+.+++|||+....++.+.+.|... ++++..+||.++.++|.+++++|.+
T Consensus 646 --------------~~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 646 --------------PELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred --------------HHHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 00000111122 234789999999999999999999874 7899999999999999999999998
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+..+ +||+|++.++|||++++++||++|.+. ....+.|+.||++|.|.. -++|-|+..
T Consensus 711 Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 8776 899999999999999999999999864 567889999999998864 444555543
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=251.96 Aligned_cols=303 Identities=17% Similarity=0.232 Sum_probs=202.7
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..+.+.|.+++.-++.-... ..+.|++.+||+|||.+++..+...+. ....+||+||+..| .|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 47889999999987764333 257899999999999988754443332 23458999999776 6788888876643
Q ss_pred --CcEEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1166 --IHKIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1166 --LkVIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
+++.++.|. ..++...+. .+..+..+|||+|++.+.+. +...++++|||||+|++.. +....++.+.
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~-----v~~~~L~lLVIDEahrfG~---~~~e~lk~l~ 746 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD-----VKWKDLGLLIVDEEHRFGV---RHKERIKAMR 746 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC-----CCHhhCCEEEEechhhcch---hHHHHHHhcC
Confidence 445445443 333333322 34456789999999877532 2234679999999999832 2334455543
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
....|+|||||+...+.... ..+.++.++
T Consensus 747 ~~~qvLl~SATpiprtl~l~~--~gl~d~~~I------------------------------------------------ 776 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAM--SGMRDLSII------------------------------------------------ 776 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHH--hhCCCcEEE------------------------------------------------
Confidence 45779999999654321100 000000000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
..|+.....+ .. ++..
T Consensus 777 ---------~~~p~~r~~v-------------------------------------~~-----~~~~------------- 792 (1147)
T PRK10689 777 ---------ATPPARRLAV-------------------------------------KT-----FVRE------------- 792 (1147)
T ss_pred ---------ecCCCCCCCc-------------------------------------eE-----EEEe-------------
Confidence 0000000000 00 0000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+ ........++.++. .+++++|||+.+..++.+.+.|... ++++..+||.++.++|.+++.+|.++..+
T Consensus 793 ~--------~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~ 863 (1147)
T PRK10689 793 Y--------DSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 (1147)
T ss_pred c--------CcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 0 00001122233332 3678999999999999999999876 78999999999999999999999988776
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+||+|+++++|||++.+++||+.+.+ |....|.|+.||++|.|.+-.+
T Consensus 864 ---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 864 ---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred ---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 89999999999999999999988775 6778899999999999865433
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=225.68 Aligned_cols=341 Identities=20% Similarity=0.305 Sum_probs=234.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP--s 1165 (2693)
..|||||.+.|..|.- -.+.+.||+...+|.|||++.+..++.. .+.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFG-NgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhC-CCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 5899999999998864 1112568999999999999988776643 455899999876 7999999999973 2
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------CcccccCccEEEEccccccccccchHHHHH
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------PKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
-.+..|.....++ ...+..|||+||.++.....+ ..|....|.+||+||.|-+-. .-..+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA--~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA--KMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH--HHHHHHH
Confidence 3344554443322 345778999999998542222 247778999999999999732 2233455
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
.-..+..+|+||||-+..+ |=..-|||| .|+++.. +|.+.-.+
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~k-------------------------------- 487 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQKK-------------------------------- 487 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHhC--------------------------------
Confidence 5667888999999997643 333446665 3444321 11110000
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
..+-.-.--.++|+|+..-..-|-.... ..+.++
T Consensus 488 ------------GhIA~VqCaEVWCpMt~eFy~eYL~~~t--------~kr~lL-------------------------- 521 (776)
T KOG1123|consen 488 ------------GHIAKVQCAEVWCPMTPEFYREYLRENT--------RKRMLL-------------------------- 521 (776)
T ss_pred ------------CceeEEeeeeeecCCCHHHHHHHHhhhh--------hhhhee--------------------------
Confidence 0111222345899999764433322100 000000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.+....||....-++......|.|+|||+...-.+ .+|-.+.|-.| |.|.|++.||.++++.|+- +
T Consensus 522 --------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~-n 587 (776)
T KOG1123|consen 522 --------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMKILQNFQT-N 587 (776)
T ss_pred --------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHHHHHhccc-C
Confidence 11123478777777777788999999999877654 44444445454 7799999999999999965 3
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcc----cEEEEEEEeCCCHHHH
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKR----DVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkK----eV~VyRLIT~gSIEEk 1543 (2693)
..+.-+.+| ++|...|||+.|+++|-..... +-.++.||.||+.|.-..+ .+..|.|+..+|.|-.
T Consensus 588 ~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 588 PKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 445555555 9999999999999999999987 5677899999999976433 3789999999998854
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=240.38 Aligned_cols=322 Identities=17% Similarity=0.108 Sum_probs=203.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sL 1166 (2693)
.+|+|+|.+++..+ +..+.|.|++.+||+|||+++...+...+. ..+.+|+|+|. +|+.++..+|.++.+ ++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 37999999999753 345789999999999999998765554443 23468999997 566888888887743 67
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh----
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---- 1240 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---- 1240 (2693)
++..+.|....... .....+|+|+|++.+............+.++|||||+|.+.+.. ..+...+..+
T Consensus 96 ~v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 96 RVGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred EEEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 88888886543321 12467999999998754322111112356999999999997532 2222223333
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.++||||.- +..++.. |+...... ...+|+-+
T Consensus 170 ~~~qii~lSATl~--n~~~la~------------------wl~~~~~~------------------------~~~rpv~l 205 (737)
T PRK02362 170 PDLQVVALSATIG--NADELAD------------------WLDAELVD------------------------SEWRPIDL 205 (737)
T ss_pred CCCcEEEEcccCC--CHHHHHH------------------HhCCCccc------------------------CCCCCCCC
Confidence 2346689999972 3444433 33211000 00011100
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
+ ..+.... .+ .. .. . +..+ ...
T Consensus 206 ~--------------~~v~~~~----------~~----~~-~~-~----------------~~~~------------~~~ 227 (737)
T PRK02362 206 R--------------EGVFYGG----------AI----HF-DD-S----------------QREV------------EVP 227 (737)
T ss_pred e--------------eeEecCC----------ee----cc-cc-c----------------cccC------------CCc
Confidence 0 0000000 00 00 00 0 0000 000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-------------------------------
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------- 1449 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------- 1449 (2693)
....++..+.+. ...++++||||..+..++.+...|...
T Consensus 228 ------~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (737)
T PRK02362 228 ------SKDDTLNLVLDT----LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKD 297 (737)
T ss_pred ------cchHHHHHHHHH----HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHH
Confidence 000122222222 235789999999998877766666432
Q ss_pred -----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec-----CCCCccchhh
Q 000047 1450 -----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-----TDWNPQVDLQ 1515 (2693)
Q Consensus 1450 -----GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD-----ppWNP~~diQ 1515 (2693)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||++..++||. || .+.+...|.|
T Consensus 298 L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 298 LADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 13567889999999999999999887654 8999999999999999888876 77 5778899999
Q ss_pred hhhhhcccCCcccEEEEEEEeC
Q 000047 1516 AQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
++|||+|.|....-.++-++..
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecC
Confidence 9999999998765555555543
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=219.98 Aligned_cols=314 Identities=15% Similarity=0.157 Sum_probs=193.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCChHHH-----------H
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPPEER-----------R 1179 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~~eR-----------k 1179 (2693)
.++..+||+|||.+++.++...+... ....+++|+|. +++.++.+.+..++.. .+..+++..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 47889999999999998888766543 34568999997 5668899999888754 344444432210 0
Q ss_pred HHHHhhh----hcCCccEEEEcHHHHHhccCCC------cccccCccEEEEccccccccccc-hHHHHHHhhc--ccccc
Q 000047 1180 RLFKEKI----VHQKFNVLLTTYEYLMNKHDRP------KLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQ--SSHRL 1246 (2693)
Q Consensus 1180 ~l~ke~i----~~~kfdVVITTYE~Lik~~Dr~------~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lk--a~~RL 1246 (2693)
..+.... .....+|+|+|++.+....... .+..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 1110000 1124679999999987543321 12223447999999999975422 1333333333 34568
Q ss_pred cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 000047 1247 LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK 1326 (2693)
Q Consensus 1247 LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkD 1326 (2693)
++|||+- ..+ .+++... ...
T Consensus 160 ~~SATlp----~~l------------------~~~~~~~-~~~------------------------------------- 179 (358)
T TIGR01587 160 LMSATLP----KFL------------------KEYAEKI-GYV------------------------------------- 179 (358)
T ss_pred EEecCch----HHH------------------HHHHhcC-CCc-------------------------------------
Confidence 8999962 111 1111000 000
Q ss_pred HhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1327 VENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1327 VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
.....++. ... +..-.|++... ..
T Consensus 180 ~~~~~~~~---------~~~------------------------------~~~~~~~~~~~-----------------~~ 203 (358)
T TIGR01587 180 EFNEPLDL---------KEE------------------------------RRFERHRFIKI-----------------ES 203 (358)
T ss_pred ccccCCCC---------ccc------------------------------cccccccceee-----------------cc
Confidence 00000000 000 00001111100 00
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCC--eEEEEeCCCCHHHHHH----HHHHHhCCCCCce
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGA----LIDKFNQQDSPFF 1480 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGi--kylRLDGSTS~eERqe----iId~FN~~dSd~f 1480 (2693)
....|...+.+++..+ ..+.++||||+....++.+..+|...+. .+..+||.++..+|.+ +++.|.++...
T Consensus 204 ~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~-- 280 (358)
T TIGR01587 204 DKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF-- 280 (358)
T ss_pred ccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe--
Confidence 0113556666666443 4578999999999999999999988776 5899999999999976 48899765543
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc----cEEEEEEEeCC---CHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR----DVLVLRFETVQ---TVEEQVRASAEH 1550 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK----eV~VyRLIT~g---SIEEkIleraek 1550 (2693)
+||+|+++++|||+ .+++||+++.+ +..++||+||++|.|.+. .|+||.....+ -.+..++++-..
T Consensus 281 -ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~ 353 (358)
T TIGR01587 281 -VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQ 353 (358)
T ss_pred -EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHH
Confidence 79999999999999 58999998876 789999999999999764 35555554443 234444444433
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=215.63 Aligned_cols=317 Identities=15% Similarity=0.222 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--CCcEEE
Q 000047 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--RIHKIV 1170 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--sLkVIv 1170 (2693)
.|..++..++. +++.|.....|+|||.+.-.-++..+.......-.||+.|+..|.- ...-+..... ++.+..
T Consensus 53 IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ha 128 (400)
T KOG0328|consen 53 IQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHA 128 (400)
T ss_pred HHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEE
Confidence 38888877775 8899999999999998643222222222222234799999987754 4444444432 567777
Q ss_pred EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-cccccc
Q 000047 1171 YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSHRLL 1247 (2693)
Q Consensus 1171 y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a~~RLL 1247 (2693)
+.|.......+.+. ..+.+||.-|+.++.+...+..|.-....++|+|||+.|.|. ..+.+..++.+. ....++
T Consensus 129 cigg~n~gedikkl---d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~ 205 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKL---DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVL 205 (400)
T ss_pred EecCCccchhhhhh---cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEE
Confidence 88776644433222 357899999999998877777888888999999999999764 456677777665 556678
Q ss_pred ccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHH
Q 000047 1248 LTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKV 1327 (2693)
Q Consensus 1248 LTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDV 1327 (2693)
+|||- ..|+..+.++.
T Consensus 206 ~SATl----p~eilemt~kf------------------------------------------------------------ 221 (400)
T KOG0328|consen 206 VSATL----PHEILEMTEKF------------------------------------------------------------ 221 (400)
T ss_pred EeccC----cHHHHHHHHHh------------------------------------------------------------
Confidence 88885 22333222222
Q ss_pred hhcCccceeEeeecc-ccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1328 ENELPEKIERLVRCE-ASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1328 ekeLP~KiE~vV~ce-LSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
+++.+..+++-. ++.. -+.+ |......+
T Consensus 222 ---mtdpvrilvkrdeltlE----------------------------gIKq-----f~v~ve~E--------------- 250 (400)
T KOG0328|consen 222 ---MTDPVRILVKRDELTLE----------------------------GIKQ-----FFVAVEKE--------------- 250 (400)
T ss_pred ---cCCceeEEEecCCCchh----------------------------hhhh-----heeeechh---------------
Confidence 122222111110 0000 0000 00000011
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
.-|++.|+++...|- =...+|||+.+...|+|.+.|+..++.+..+||.+.++||.++++.|+.+.+. +||+|
T Consensus 251 --ewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitT 323 (400)
T KOG0328|consen 251 --EWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITT 323 (400)
T ss_pred --hhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEe
Confidence 128888888887664 34789999999999999999999999999999999999999999999999887 89999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
++-++|||+|..+.||+||+|-|+..|++||||.+|.|.+ -.+++|+..+.++
T Consensus 324 DVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred chhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 9999999999999999999999999999999999999964 3456777765554
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=234.34 Aligned_cols=313 Identities=19% Similarity=0.187 Sum_probs=196.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sL 1166 (2693)
.+|+++|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. +..++.+++.+|.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 469999999998753 47899999999999999987666555433 24589999974 55778888887643 46
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh---c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---Q 1241 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---k 1241 (2693)
++..+.|........ ....+|+|+|++.+............++++|||||+|.+.+.. ..+...+..+ .
T Consensus 94 ~v~~~~G~~~~~~~~------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDF------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChhh------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 666777754332111 2367999999997754322222223467899999999996532 2222222222 2
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
..+.++||||.- +.. +|.+|++...... ..+|
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~------------------------~~r~--- 200 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS------------------------NFRP--- 200 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC------------------------CCCC---
Confidence 345689999972 233 3344443211000 0000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
.|-.. .++... .++ + ..+ .
T Consensus 201 ----------vpl~~-~i~~~~------~~~----------------------------~-~~~-------~-------- 219 (674)
T PRK01172 201 ----------VPLKL-GILYRK------RLI----------------------------L-DGY-------E-------- 219 (674)
T ss_pred ----------CCeEE-EEEecC------eee----------------------------e-ccc-------c--------
Confidence 01000 010000 000 0 000 0
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-------------------------CCeEEE
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-------------------------QYRYLR 1455 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-------------------------GikylR 1455 (2693)
+ .+. .+..++.+....++++|||+..+..++.+...|... ...+..
T Consensus 220 ------~--~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 220 ------R--SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred ------c--ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEE
Confidence 0 000 022333444455788999999988877777666432 123567
Q ss_pred EeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC---------CCCccchhhhhhhhcccCCc
Q 000047 1456 LDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1456 LDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp---------pWNP~~diQAIGRAHRIGQk 1526 (2693)
+||+++.++|..+.+.|+++... +|++|++++.|||+++ .+||++|. ++++..+.|++|||+|.|..
T Consensus 291 ~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 89999999999999999877554 7999999999999986 67888764 34667788999999999976
Q ss_pred ccEEEEEEE
Q 000047 1527 RDVLVLRFE 1535 (2693)
Q Consensus 1527 KeV~VyRLI 1535 (2693)
.....+-++
T Consensus 367 ~~g~~~i~~ 375 (674)
T PRK01172 367 QYGIGYIYA 375 (674)
T ss_pred CcceEEEEe
Confidence 653333333
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=214.26 Aligned_cols=332 Identities=17% Similarity=0.235 Sum_probs=219.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH----HHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL----PGWES 1157 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL----~QW~e 1157 (2693)
.+.....-|.|...|.-.+- +...+-|..||+|||...+..++.-+-.++.. ..+||+||+..| ++...
T Consensus 198 ~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 198 TLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred hcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHH
Confidence 34444566778887764443 45556778899999988776665544443332 358999999776 34556
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
.|..|+ ++.+.+..|.-..+. ++.......||||.|+++|+.++.. ..|......++|+|||+||.... ..+.
T Consensus 274 qlaqFt-~I~~~L~vGGL~lk~---QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 274 QLAQFT-DITVGLAVGGLDLKA---QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHHhhc-cceeeeeecCccHHH---HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 667777 488888888776654 3445567899999999999987633 34556677899999999996432 2233
Q ss_pred HHHHhh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
..++.. +.+..+|+|||- ...+.||.++- +++|+...-+...+.
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPvrifvd~~~~~----------------- 394 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPVRIFVDPNKDT----------------- 394 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHhh-----------------cCCCeEEEeCCcccc-----------------
Confidence 333222 122337777774 22333333211 111111110000000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
. ..|++-+ +
T Consensus 395 -------------------------------------------------------a----~~LtQEF----i-------- 403 (691)
T KOG0338|consen 395 -------------------------------------------------------A----PKLTQEF----I-------- 403 (691)
T ss_pred -------------------------------------------------------c----hhhhHHH----h--------
Confidence 0 0000000 0
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+-+. +-..+-.+|..++.++. ..+++||.+....+..|.-.|-..|+++..|||+.++++|-+.+++|+
T Consensus 404 -RIR~~-------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk 473 (691)
T KOG0338|consen 404 -RIRPK-------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK 473 (691)
T ss_pred -eeccc-------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH
Confidence 00000 00012233444444443 468999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
+...+ |||+|+++++|||+..+-+||+|++|-....|++|+||+.|.|. .-+-..|+.++ |.+|+.-
T Consensus 474 ~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR--aGrsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 474 KEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR--AGRSVTLVGES--DRKLLKE 540 (691)
T ss_pred hccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc--CcceEEEeccc--cHHHHHH
Confidence 88877 89999999999999999999999999999999999999999984 34445566655 5555543
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=223.26 Aligned_cols=374 Identities=16% Similarity=0.197 Sum_probs=226.4
Q ss_pred CcchHHHHHHHHHHHHHhhc-----CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCchH-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN-----QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSVL-PGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n-----~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSLL-~QW~eEfeK 1161 (2693)
..++|-|...+.|++.-.+. .+..+++..||+|||+.....|..++..+.. +-.+|||+|...| .|..++|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 37899999999999876552 3345788999999999988888877766533 2357999998765 678999999
Q ss_pred HCCC--CcEEEEcCChHHHHHHHH--hhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEccccccccccchH--H
Q 000047 1162 WAPR--IHKIVYCGPPEERRRLFK--EKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNASCKL--N 1234 (2693)
Q Consensus 1162 waPs--LkVIvy~Gs~~eRk~l~k--e~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~sSKl--s 1234 (2693)
|++. +.|....|...-+.+..+ ........||+|+|+++|+.++. ...|..-+..|+|||||+||.+...+- .
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLD 317 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHH
Confidence 9974 556666676554443322 22223467999999999998775 345666678999999999997644332 2
Q ss_pred HHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1235 raLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
..+..+....++.+. ..|+.+..-.-|..|.... .-|.++ ...|.++
T Consensus 318 ~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~~---t~~~~~----------------------~~~l~kL 364 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSELL---TKLGKL----------------------YPPLWKL 364 (620)
T ss_pred HHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHHH---hhcCCc----------------------CchhHhh
Confidence 232222222222221 1111111101111000000 000000 0001111
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
+. .....+.|.|. ..| -.+||-++......+.
T Consensus 365 ~~--------satLsqdP~Kl--------------------------------------~~l--~l~~Prl~~v~~~~~~ 396 (620)
T KOG0350|consen 365 VF--------SATLSQDPSKL--------------------------------------KDL--TLHIPRLFHVSKPLIG 396 (620)
T ss_pred hc--------chhhhcChHHH--------------------------------------hhh--hcCCCceEEeecccce
Confidence 11 01111112111 000 0223322211100000
Q ss_pred c-cCCCCCCChhhhcc--cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHH
Q 000047 1395 T-LIPKHYLPPIVRLC--GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGA 1467 (2693)
Q Consensus 1395 ~-li~~~~l~~Lvr~S--gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqe 1467 (2693)
. -++.......+-.. -|-..+..+|.. ....++|+|+........|...|. ...+++-.++|+.+.+.|.+
T Consensus 397 ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k 474 (620)
T KOG0350|consen 397 RYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYK 474 (620)
T ss_pred eeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHH
Confidence 0 00000000011111 134455556654 346799999999887776666664 45677778999999999999
Q ss_pred HHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1468 iId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
++.+|+.++.. +||+++++.+|||+.+.+.||+||+|-.-..|++|+||+.|.||.- ++|.|+.. -|++.+..
T Consensus 475 ~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~--~~~r~F~k 547 (620)
T KOG0350|consen 475 MLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK--HEKRLFSK 547 (620)
T ss_pred HHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc--ccchHHHH
Confidence 99999988876 7999999999999999999999999999999999999999999864 44555443 34555555
Q ss_pred HHHHH
Q 000047 1548 AEHKL 1552 (2693)
Q Consensus 1548 aekKl 1552 (2693)
...|.
T Consensus 548 lL~~~ 552 (620)
T KOG0350|consen 548 LLKKT 552 (620)
T ss_pred HHHHh
Confidence 54443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=229.64 Aligned_cols=321 Identities=19% Similarity=0.153 Sum_probs=197.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHH-HHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI-CYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALI-a~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-s 1165 (2693)
.+|+|+|.+++.- .+..+.+.|++..||+|||+++...+ ..++. ..+.+|+|+|.. ++.++..+|.+|.. +
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 4799999999973 23357899999999999999995444 34432 234589999975 55778888887753 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a 1242 (2693)
+++..+.|....... .....+|+|+|++.+............++++|||||+|.+... ...+...+.++. .
T Consensus 96 ~~v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~ 169 (720)
T PRK00254 96 LRVAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR 169 (720)
T ss_pred CEEEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcC
Confidence 777788886543221 1246899999999875433221122245789999999999643 334444455543 3
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++||||.- +..++- +|+....... ..+|.-++
T Consensus 170 ~qiI~lSATl~--n~~~la------------------~wl~~~~~~~------------------------~~rpv~l~- 204 (720)
T PRK00254 170 AQILGLSATVG--NAEELA------------------EWLNAELVVS------------------------DWRPVKLR- 204 (720)
T ss_pred CcEEEEEccCC--CHHHHH------------------HHhCCccccC------------------------CCCCCcce-
Confidence 56689999972 244433 3332211000 00110000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
. .++ ... .++ ..... ..
T Consensus 205 ------------~-~~~-~~~-----~~~---------~~~~~---------------------------~~-------- 221 (720)
T PRK00254 205 ------------K-GVF-YQG-----FLF---------WEDGK---------------------------IE-------- 221 (720)
T ss_pred ------------e-eEe-cCC-----eee---------ccCcc---------------------------hh--------
Confidence 0 000 000 000 00000 00
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh---------------------------------c
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---------------------------------K 1449 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~---------------------------------r 1449 (2693)
+. ...+..++.++...+.++||||..+..+..+...|.. .
T Consensus 222 ----~~---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 222 ----RF---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred ----cc---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 00 0001112222233577899999888766554433311 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-------ecCCCC-ccchhhhhhhhc
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWN-PQVDLQAQARAH 1521 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-------yDppWN-P~~diQAIGRAH 1521 (2693)
...+..+||+++.++|..+.+.|+++... +|++|++++.|+|+++.+.||. |+.++- ...+.|++|||+
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 23578899999999999999999887654 8999999999999998888874 333332 347899999999
Q ss_pred ccCCcccEEEEEEEeCCC
Q 000047 1522 RIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1522 RIGQkKeV~VyRLIT~gS 1539 (2693)
|.|....-.++-++..+.
T Consensus 372 R~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCcCCCceEEEEecCcc
Confidence 998776656665555443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=224.24 Aligned_cols=309 Identities=20% Similarity=0.228 Sum_probs=226.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+|+-|.++|+.+++ +.+.|....||.||++++-... ++ ..|..|||.|. +|+.+..+.+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 5788899999998887 7899999999999998663322 22 25689999996 77888888887665 44
Q ss_pred EEEEcC--ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc-------chHHHHHH
Q 000047 1168 KIVYCG--PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS-------CKLNADLK 1238 (2693)
Q Consensus 1168 VIvy~G--s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s-------SKlsraLk 1238 (2693)
...... +..++..++ ..+..+.++++..+++.+........|...+..+++|||||.+-.++ ..+.....
T Consensus 84 A~~lnS~l~~~e~~~v~-~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 84 AAYLNSTLSREERQQVL-NQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eehhhcccCHHHHHHHH-HHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 333333 345555543 44566789999999999988766677888899999999999986653 23333344
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.|....+++||||--.--..|+...|.+-.+.+|.. .|.+|-
T Consensus 163 ~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN-------------------------------- 204 (590)
T COG0514 163 GLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN-------------------------------- 204 (590)
T ss_pred hCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch--------------------------------
Confidence 555567899999986666667666665544432211 111100
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
+|-.+.. .
T Consensus 205 -------------------------------i~~~v~~----------------------~------------------- 212 (590)
T COG0514 205 -------------------------------LALKVVE----------------------K------------------- 212 (590)
T ss_pred -------------------------------hhhhhhh----------------------c-------------------
Confidence 0000000 0
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
...-.++.+|.. .....+...||||..+..++.|..+|...|++...+||++..++|+.+-++|..++..
T Consensus 213 -------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 213 -------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred -------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 000001111111 1233455689999999999999999999999999999999999999999999988776
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
++|+|.|.|.|||-++..+||+||+|-+...|.|-+|||+|-|...++.+++
T Consensus 283 ---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 283 ---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred ---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 8999999999999999999999999999999999999999999887765543
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=217.76 Aligned_cols=325 Identities=18% Similarity=0.283 Sum_probs=216.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-HHHHhcCC---------CCCEEEEecCch-HHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-YLMETKND---------RGPFLVVVPSSV-LPGWE 1156 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-~Lle~k~~---------~gP~LIVVPtSL-L~QW~ 1156 (2693)
+..+-|+|+.++.-+.. +++.+.+..||+|||...+..+. ++++.+.. ....||++|+.. +.|-.
T Consensus 94 ~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 35677899999986664 78888999999999999886544 55544321 123799999855 57889
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls 1234 (2693)
+|.+++.. .++.++.+|....+... ......+||+++|...|....++..+......|+|||||++|....
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m---- 242 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM---- 242 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc----
Confidence 99999874 45555555554444322 2335789999999999998888888888888899999999985421
Q ss_pred HHHHhhccc--ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSS--HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1235 raLk~Lka~--~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.|-.. +.+.-+++|..++..-+ -|...|. ..+.
T Consensus 243 ----gF~p~Ir~iv~~~~~~~~~~~qt~----------------mFSAtfp-------------------------~~iq 277 (482)
T KOG0335|consen 243 ----GFEPQIRKIVEQLGMPPKNNRQTL----------------LFSATFP-------------------------KEIQ 277 (482)
T ss_pred ----cccccHHHHhcccCCCCccceeEE----------------EEeccCC-------------------------hhhh
Confidence 01111 11111222211111000 0000000 0011
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
.+...|+ .+- ...+. +...+... .+. .+ .++
T Consensus 278 ~l~~~fl---------~~~----yi~la-----------------V~rvg~~~----~ni----~q--~i~--------- 308 (482)
T KOG0335|consen 278 RLAADFL---------KDN----YIFLA-----------------VGRVGSTS----ENI----TQ--KIL--------- 308 (482)
T ss_pred hhHHHHh---------hcc----ceEEE-----------------Eeeecccc----ccc----ee--Eee---------
Confidence 1111111 000 00000 00000000 000 00 000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcC-------CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT-------DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkat-------GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
.+....|...|.++|.+.... .++++||++..+.++.|..+|...++++..|||..++.+|
T Consensus 309 ------------~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 309 ------------FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ------------eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 122234666677777654421 2599999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+.++.|+.+..+ +||+|.++.+|||+..+++||+||+|-+...|++||||++|.|+.--.+.|
T Consensus 377 ~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 377 EQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred HHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999998887 899999999999999999999999999999999999999999988665544
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=206.45 Aligned_cols=335 Identities=19% Similarity=0.297 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCCE-EEEecCchH-HHHHHHHHHHCC
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGPF-LVVVPSSVL-PGWESEINFWAP 1164 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP~-LIVVPtSLL-~QW~eEfeKwaP 1164 (2693)
--.|.++|.-++. ++..++-..||+|||+.++..|...+... +..|++ |||||+..| .|-.+-+.+...
T Consensus 161 TsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 161 TSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred chHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 3458888887776 78889999999999999998887766442 223454 999999766 555666666654
Q ss_pred CCcEEE---EcCC-hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc--hHHHHH
Q 000047 1165 RIHKIV---YCGP-PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC--KLNADL 1237 (2693)
Q Consensus 1165 sLkVIv---y~Gs-~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS--KlsraL 1237 (2693)
...+++ ..|. .....+. -...+.+|+|.|+++|..++.. ..+..-+..+||+|||+||..-+. -+.+.|
T Consensus 237 ~~hWIVPg~lmGGEkkKSEKA----RLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKKSEKA----RLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred CceEEeeceeecccccccHHH----HHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 444443 2232 2211111 1235889999999999876532 223334467799999999854321 111111
Q ss_pred Hhhcc--------------cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHH
Q 000047 1238 KHYQS--------------SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEE 1303 (2693)
Q Consensus 1238 k~Lka--------------~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe 1303 (2693)
..+.. ...+|||||-
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATL--------------------------------------------------- 341 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATL--------------------------------------------------- 341 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhh---------------------------------------------------
Confidence 11100 0011111111
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCc
Q 000047 1304 NLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHP 1383 (2693)
Q Consensus 1304 ~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHP 1383 (2693)
..-+.+|..+ --+....|..+-+..|. +.....+...|.-|
T Consensus 342 -td~V~rLa~~-----------------sLkDpv~I~ld~s~~~~---------------------~p~~~a~~ev~~~~ 382 (708)
T KOG0348|consen 342 -TDGVNRLADL-----------------SLKDPVYISLDKSHSQL---------------------NPKDKAVQEVDDGP 382 (708)
T ss_pred -HHHHHHHhhc-----------------cccCceeeeccchhhhc---------------------CcchhhhhhcCCcc
Confidence 0000111110 00000011111000000 00001111112211
Q ss_pred cccchhhhhhhccCCCCCCChhhhcccHHH--HHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhh-----------
Q 000047 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLE--MLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF----------- 1448 (2693)
Q Consensus 1384 yL~~~~~EEid~li~~~~l~~Lvr~SgKLe--lLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~----------- 1448 (2693)
+-... ....++......++....|+. .|.-+|.... ....|+|||....++++.=.+.|..
T Consensus 383 ~~~~l----~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 383 AGDKL----DSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred ccccc----ccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 11100 001122222233333444543 4445554432 2346899999888877765555421
Q ss_pred -----------cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhh
Q 000047 1449 -----------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ 1517 (2693)
Q Consensus 1449 -----------rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAI 1517 (2693)
.+.++.+|||+|.+++|..++..|..... .+|++|+++++||||+.++.||-||+|..+..|++|+
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRv 535 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRV 535 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHh
Confidence 34579999999999999999999965443 4899999999999999999999999999999999999
Q ss_pred hhhcccCCcccEEE
Q 000047 1518 ARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1518 GRAHRIGQkKeV~V 1531 (2693)
||+-|+|-+-.-..
T Consensus 536 GRTARaG~kG~alL 549 (708)
T KOG0348|consen 536 GRTARAGEKGEALL 549 (708)
T ss_pred hhhhhccCCCceEE
Confidence 99999998766433
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=201.94 Aligned_cols=323 Identities=18% Similarity=0.238 Sum_probs=217.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa--PsL 1166 (2693)
+.-|.|..+|..++. +.+||-+.-+|+|||......+..-+...+...-.||+.|+..+ .|-.+.|.... -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 445679999998887 99999999999999987655555444444444446999999776 55555564332 357
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC----CcccccCccEEEEccccccccccchHHHHHHh---
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR----PKLSKIQWHYIIIDEGHRIKNASCKLNADLKH--- 1239 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr----~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~--- 1239 (2693)
++.+++|....- .+......+.||||+|++.+...... ..+...+..|+|+|||+++.+.. +...|..
T Consensus 105 K~~vivGG~d~i---~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~d~L~~i~e 179 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FPDILEGIEE 179 (442)
T ss_pred eEEEEEccHHHh---hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hhhHHhhhhc
Confidence 777777775543 34445567899999999998654422 12334456899999999986542 1122221
Q ss_pred -hcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1240 -YQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1240 -Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
+.. +..+++|||= .+++.+ .|..|+...
T Consensus 180 ~lP~~RQtLlfSATi-td~i~q---------------------l~~~~i~k~---------------------------- 209 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATI-TDTIKQ---------------------LFGCPITKS---------------------------- 209 (442)
T ss_pred cCCCccceEEEEeeh-hhHHHH---------------------hhcCCcccc----------------------------
Confidence 111 2335555553 111111 111111000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
.-+.+.. .. +. .....|.+ -|
T Consensus 210 -----------------~a~~~e~-------------------~~---~v---stvetL~q----~y------------- 230 (442)
T KOG0340|consen 210 -----------------IAFELEV-------------------ID---GV---STVETLYQ----GY------------- 230 (442)
T ss_pred -----------------cceEEec-------------------cC---CC---Cchhhhhh----he-------------
Confidence 0000000 00 00 00000000 00
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
-++...+|-.+|..+|..+.. ....++||.+.+..+++|...|+..+++...||+-+++.+|-..+.+|+.+.
T Consensus 231 ------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~ 304 (442)
T KOG0340|consen 231 ------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA 304 (442)
T ss_pred ------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC
Confidence 122334678889999998876 5778999999999999999999999999999999999999999999998877
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
.. +||+|+++++|||++..+.||+||.|-.|..|++|.||..|.|..-. -+.+++...+|
T Consensus 305 ~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~--aiSivt~rDv~ 364 (442)
T KOG0340|consen 305 AR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM--AISIVTQRDVE 364 (442)
T ss_pred cc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc--eEEEechhhHH
Confidence 66 89999999999999999999999999999999999999988886544 33445554444
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=208.94 Aligned_cols=308 Identities=19% Similarity=0.322 Sum_probs=209.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHH-HHHHh---cCCCCCE-EEEecCchH-HHHHHHHHHHCC--CCcEEEEcCChHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALIC-YLMET---KNDRGPF-LVVVPSSVL-PGWESEINFWAP--RIHKIVYCGPPEERRR 1180 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa-~Lle~---k~~~gP~-LIVVPtSLL-~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~ 1180 (2693)
+...|-..-+|+|||...+--+. +.+.+ ....+|+ ||+||+..+ .|...|.++|+. +++++..+|......+
T Consensus 260 grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 260 GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQ 339 (731)
T ss_pred cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHH
Confidence 44556556799999976654332 33322 3356776 778898555 778889999853 6777766665544332
Q ss_pred HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcccc-cccccccCCCCCH
Q 000047 1181 LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSSH-RLLLTGTPLQNNL 1257 (2693)
Q Consensus 1181 l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~~-RLLLTGTPLQNnL 1257 (2693)
.. .+ ..+..+||+|+++|+...........+..|+|||||.||-.... +...+..+++..+ .|++++|-
T Consensus 340 ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf----- 411 (731)
T KOG0339|consen 340 SK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF----- 411 (731)
T ss_pred HH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc-----
Confidence 21 12 26889999999999876655556667789999999999966442 2222223343333 25555542
Q ss_pred HHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeE
Q 000047 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337 (2693)
Q Consensus 1258 eELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~ 1337 (2693)
.. ++.++.+-|+ . +.+..
T Consensus 412 ---------------------~~-----------------------------kIe~lard~L---------~---dpVrv 429 (731)
T KOG0339|consen 412 ---------------------KK-----------------------------KIEKLARDIL---------S---DPVRV 429 (731)
T ss_pred ---------------------hH-----------------------------HHHHHHHHHh---------c---CCeeE
Confidence 00 0111111111 1 11111
Q ss_pred eeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHH
Q 000047 1338 LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 1417 (2693)
Q Consensus 1338 vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLde 1417 (2693)
+ ..+. +. .+..+.+.-.+|- ....|+.+|.+
T Consensus 430 V-qg~v------------------ge-----an~dITQ~V~V~~-------------------------s~~~Kl~wl~~ 460 (731)
T KOG0339|consen 430 V-QGEV------------------GE-----ANEDITQTVSVCP-------------------------SEEKKLNWLLR 460 (731)
T ss_pred E-Eeeh------------------hc-----cccchhheeeecc-------------------------CcHHHHHHHHH
Confidence 1 0000 00 0011111111111 11238899998
Q ss_pred HHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc
Q 000047 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 1497 (2693)
Q Consensus 1418 LL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa 1497 (2693)
.|.++... .+||||..-....+.|...|..+||++..|||.+.+.+|.+.|.+|+....+ +|+.|+++.+||++..
T Consensus 461 ~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 461 HLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATDVAARGLDIPS 536 (731)
T ss_pred HhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEeeHhhcCCCccc
Confidence 88887654 4999999999999999999999999999999999999999999999888777 8999999999999999
Q ss_pred cCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1498 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1498 ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+||+||..-....+.|||||.+|.|-+ -..|.|||....+
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 99999999999999999999999999976 5678888865544
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-18 Score=223.85 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=87.6
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-----HHHHHHhC----CC----CCceEEEeeecccc
Q 000047 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-----ALIDKFNQ----QD----SPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1424 atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq-----eiId~FN~----~d----Sd~fVfLLSTrAGG 1490 (2693)
..+.++||||+.+..++.|.+.|...++ ..|||.+++.+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4568999999999999999999998887 8999999999999 78999975 22 01135799999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCccc--EEEE
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD--VLVL 1532 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe--V~Vy 1532 (2693)
+|||+.. ++||+++.++ ..|+||+||++|.|.... ++|+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEE
Confidence 9999975 9999988775 799999999999998644 4444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=210.67 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecCchHH-HH---HHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPSSVLP-GW---ESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPtSLL~-QW---~eEfeK 1161 (2693)
++-+-|...+.-++. +.+.+.+.-||+|||+..+..+..++..... .--+|||||+..|. |- ..++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 566777777766654 6688999999999999887766655543221 12369999998874 43 344556
Q ss_pred HCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc-ccccCccEEEEccccccccccc--hHHHHHH
Q 000047 1162 WAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK-LSKIQWHYIIIDEGHRIKNASC--KLNADLK 1238 (2693)
Q Consensus 1162 waPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~-L~kikWd~VIIDEAHRIKN~sS--KlsraLk 1238 (2693)
+.+...+.+..|....+... ..+. ...+++|+|+++|..++++.. +.-..-+++|||||+|+..... -+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhh-ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 67777777777765544322 2233 389999999999988765432 2222237999999999854332 1112222
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. +..+|.|||-
T Consensus 257 ~lpk~rqt~LFSAT~----------------------------------------------------------------- 271 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ----------------------------------------------------------------- 271 (543)
T ss_pred hccccceeeEeeCCC-----------------------------------------------------------------
Confidence 2211 1123334432
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccc--hhhhhhhc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ--LHAEEVDT 1395 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~--~~~EEid~ 1395 (2693)
+..-+.+.+-. |.. .|-|+.- ....+..+
T Consensus 272 --------------------------~~kV~~l~~~~---------------------L~~--d~~~v~~~d~~~~~The 302 (543)
T KOG0342|consen 272 --------------------------PSKVKDLARGA---------------------LKR--DPVFVNVDDGGERETHE 302 (543)
T ss_pred --------------------------cHHHHHHHHHh---------------------hcC--CceEeecCCCCCcchhh
Confidence 11111111100 000 0001000 00000000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
-+... ..+.....+|-+|..+|.+.... .||||||..-.+..++.+.|.+..+++..|||..++..|..+..+|.+.
T Consensus 303 ~l~Qg--yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka 379 (543)
T KOG0342|consen 303 RLEQG--YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA 379 (543)
T ss_pred cccce--EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc
Confidence 00000 01122234577888888876543 8999999999999999999999999999999999999999999999887
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
++. ||++|+++.+|+|++++|.||-||+|-+|..|++|+||+.|-|-+-+
T Consensus 380 esg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 380 ESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred ccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 776 89999999999999999999999999999999999999999775533
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=216.24 Aligned_cols=395 Identities=15% Similarity=0.152 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--sL 1166 (2693)
.|+|||.+.+..+.- +.|+|+...||.|||++++..++.... . ...++||+|+.-| .+|.+++..++- ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL--~-g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNAL--T-GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhh--c-CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 468888887766653 456799999999999998766432222 1 2348999998765 566666654432 45
Q ss_pred cEEEEcCC-hHH-HHHHHHhhhhcCCccEEEEcHHHHHhcc-------CCCcccccCccEEEEccccccccccchHHHHH
Q 000047 1167 HKIVYCGP-PEE-RRRLFKEKIVHQKFNVLLTTYEYLMNKH-------DRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1167 kVIvy~Gs-~~e-Rk~l~ke~i~~~kfdVVITTYE~Lik~~-------Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
.+.+..+. ... ...... ......+|+++|...|..+. ....+....+.++||||||.|.-..
T Consensus 141 sv~~~~~~s~~~~~~~~~r--r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe------- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEK--RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS------- 211 (762)
T ss_pred cEEEEECCCCccccCHHHH--HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-------
Confidence 55544332 111 100001 11246899999999883211 1112233467899999999984322
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCC------------------hhHHHHHhcCcccCCCCCCchhhhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS------------------SEDFSQWFNKPFESNGDNSPDEALL 1299 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S------------------~k~F~e~F~kP~e~~g~~s~~e~~L 1299 (2693)
++..|++||.|-.. ..+|..++-+...+-.. ...-.+.|..+ . +
T Consensus 212 ----artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~----------l 273 (762)
T TIGR03714 212 ----AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N----------L 273 (762)
T ss_pred ----CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c----------c
Confidence 44568899977533 45776664332221111 00111111110 0 0
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhhhhHhHHhhcCccceeEeeec------cccHHHHHHHHHHHHH--hh-----------
Q 000047 1300 SEEENLLIINRLHQVLRP-FVLRRLKHKVENELPEKIERLVRC------EASAYQKLLMKRVEEN--LG----------- 1359 (2693)
Q Consensus 1300 seEe~lliI~RLhkVLrP-FLLRRtKkDVekeLP~KiE~vV~c------eLSa~Qk~LYk~Lee~--l~----------- 1359 (2693)
...++......+...|+- +++.|-+.-+- -+....+|.- +-..|+.-|...++.. +.
T Consensus 274 ~~~~~~~~~~~i~~al~A~~~~~~d~dYiV---~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~I 350 (762)
T TIGR03714 274 YSEEYFELVRHINLALRAHYLFKRNKDYVV---TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASI 350 (762)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhcCCceEE---ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeee
Confidence 001111122233333332 22222111110 1111111110 0112333333333211 00
Q ss_pred ----------ccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC-hhhhcccHHHHHHHHHHHhhcCCCe
Q 000047 1360 ----------SIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLKATDHR 1428 (2693)
Q Consensus 1360 ----------si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~-~Lvr~SgKLelLdeLL~kLkatGhK 1428 (2693)
.+..-.+. ....-.++.++.+-..+.-+...... .....+ -......|+.++.+.+.++...+.+
T Consensus 351 t~qn~Fr~Y~kl~GmTGT-a~~~~~Ef~~iY~l~v~~IPt~kp~~---r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~p 426 (762)
T TIGR03714 351 TYQNLFKMFNKLSGMTGT-GKVAEKEFIETYSLSVVKIPTNKPII---RIDYPDKIYATLPEKLMATLEDVKEYHETGQP 426 (762)
T ss_pred eHHHHHhhCchhcccCCC-ChhHHHHHHHHhCCCEEEcCCCCCee---eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCC
Confidence 00000000 11112233344333222110000000 000000 1123446999999999888888999
Q ss_pred EEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcc---------ccC
Q 000047 1429 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ---------AAD 1499 (2693)
Q Consensus 1429 VLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQ---------aAD 1499 (2693)
|||||......+.|...|...|+++..|+|.+...+|..+...|+.+ -++|+|+.+|+|+|+. ..+
T Consensus 427 vLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 427 VLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred EEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEccccccccCCCCCccccccCCeE
Confidence 99999999999999999999999999999999988877666666433 2799999999999999 889
Q ss_pred EEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1500 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1500 tVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||.||++-+... .|+.||++|.|..-.+..
T Consensus 502 vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 502 VIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred EEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 9999999987655 999999999997655433
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=201.17 Aligned_cols=318 Identities=19% Similarity=0.274 Sum_probs=216.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC-C----CEEEEecCchHHH----HHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR-G----PFLVVVPSSVLPG----WESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~-g----P~LIVVPtSLL~Q----W~eEf 1159 (2693)
...-|-|...+..++. +...++-..||+|||+..+..+...+...... . -.|||.|+..|.- ....|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 4677889999987775 77888889999999999888887766332221 1 2599999977744 34445
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--CcccccCccEEEEccccccccccc--hHHH
Q 000047 1160 NFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSKIQWHYIIIDEGHRIKNASC--KLNA 1235 (2693)
Q Consensus 1160 eKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~kikWd~VIIDEAHRIKN~sS--Klsr 1235 (2693)
..+++++.+..+.|.......+. .+...+.+|+|.|+++|.....+ ..+.-....++|+|||+|+...+. .+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 56678999999999866554432 34456889999999999754432 234444678999999999976553 3334
Q ss_pred HHHhhcccccc-cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DLKHYQSSHRL-LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aLk~Lka~~RL-LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.|..+...+|- |.|||=.+ ..++ +...
T Consensus 181 ILs~LPKQRRTGLFSATq~~-~v~d----------------------------------------------L~ra----- 208 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQ-EVED----------------------------------------------LARA----- 208 (567)
T ss_pred HHHhcccccccccccchhhH-HHHH----------------------------------------------HHHh-----
Confidence 44455544443 33444300 0000 0000
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
-|| ..+...+... ... ..|.-
T Consensus 209 ----GLR-----------Npv~V~V~~k-----------------------~~~------------~tPS~--------- 229 (567)
T KOG0345|consen 209 ----GLR-----------NPVRVSVKEK-----------------------SKS------------ATPSS--------- 229 (567)
T ss_pred ----hcc-----------Cceeeeeccc-----------------------ccc------------cCchh---------
Confidence 001 0000000000 000 00000
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~F 1472 (2693)
.......+...-|+..|.++|.. ...+|+|||...-...++....|.. ..+.++.|||.++...|..++..|
T Consensus 230 ----L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 230 ----LALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred ----hcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 00001123344589999999986 4578999999888888887777753 578899999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+.... +|++|+++++|||++++|+||.||||-+|..+.||.||+.|.|..-.-.||
T Consensus 304 ~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 304 RKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred HhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 874444 899999999999999999999999999999999999999999977554444
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=205.57 Aligned_cols=333 Identities=20% Similarity=0.237 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC--C-CCCEEEEecCchH-HHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN--D-RGPFLVVVPSSVL-PGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~--~-~gP~LIVVPtSLL-~QW~eEfeKwa 1163 (2693)
..+.+.|.+.|...+. +...|-|.-||+|||+..+..+.. |+..+- . .--+|||.|+..| .|..+-+.+..
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 3577789999887775 778889999999999887765543 332221 1 1127999999776 55555555443
Q ss_pred --CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccch--HHHHHH
Q 000047 1164 --PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASCK--LNADLK 1238 (2693)
Q Consensus 1164 --PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sSK--lsraLk 1238 (2693)
..+..-++.|..+... +.......+|+|||+++|..+.|.. .|.-....++|+|||+||.....+ +...+.
T Consensus 166 k~h~fSaGLiiGG~~~k~----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKF----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHH----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 2344455566554332 2233468899999999999877643 466667899999999999775533 333444
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. +..||+|||+- ++..||.-|
T Consensus 242 ~lP~~RQTLLFSATqt-~svkdLaRL------------------------------------------------------ 266 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQT-KSVKDLARL------------------------------------------------------ 266 (758)
T ss_pred hCChhheeeeeecccc-hhHHHHHHh------------------------------------------------------
Confidence 4433 44588888882 122221110
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
...-|..+ .+.- +. ....=..|++. |
T Consensus 267 ----------sL~dP~~v----svhe-------------------~a----~~atP~~L~Q~----y------------- 292 (758)
T KOG0343|consen 267 ----------SLKDPVYV----SVHE-------------------NA----VAATPSNLQQS----Y------------- 292 (758)
T ss_pred ----------hcCCCcEE----EEec-------------------cc----cccChhhhhhe----E-------------
Confidence 00011111 0000 00 00000011111 1
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
-++....|+.+|...|.... ..|.|||...-..+.++.+.+.. .|+..+.|+|.+++..|.++.++|...
T Consensus 293 ------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 293 ------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred ------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 12334568999999998654 56899999888888888888764 589999999999999999999999764
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
. .++|++|+++++|||++.+|.||-||.|-+...|++|.||+.|.+..-+..+|-+ -+-||.++.+++.|.
T Consensus 365 ~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 365 R---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred c---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 3 3699999999999999999999999999999999999999999998777665532 455688888887764
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-17 Score=211.27 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
....|+.+|.+.+......+.++||||......+.|...|...|+++..|+|.+...+|..+...|..+ -++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g-----~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG-----AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC-----eEEEEc
Confidence 345699999999988777899999999999999999999999999999999998887777666666433 289999
Q ss_pred cccccccCc---cccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1487 RAGGVGVNL---QAAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1487 rAGGeGLNL---QaAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+.+|+|+|+ ..+. +||+||.+-|+..|.|+.||++|.|..-.+..| + +.|+.++.
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~ 546 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLK 546 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHH
Confidence 999999999 5777 999999999999999999999999977544333 2 33555554
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=204.23 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.+++..+...+..|||||......+.|...|...|+++..|+|... +|+..+..|...... |+|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 346999999999888777889999999999999999999999999999999865 566666666433333 899999
Q ss_pred ccccccCcc---ccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1488 AGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1488 AGGeGLNLQ---aAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
++|+|+|+. .+. +||+||.|-|...|.|++||++|.|..-.+..| + +.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHh
Confidence 999999998 444 999999999999999999999999976444333 3 346655544
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=211.51 Aligned_cols=368 Identities=15% Similarity=0.114 Sum_probs=203.1
Q ss_pred CcchHHHHHHHHHHHHHhhc------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
...|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++.... ...+|||||. .|..||.++|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-NPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-CCeEEEEECcHHHHHHHHHHHHh
Confidence 46899999999999877654 458999999999999999999888875433 3458999996 577999999999
Q ss_pred HCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--Ccccc-cCccEEEEccccccccccchHHHHHH
Q 000047 1162 WAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSK-IQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1162 waPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~k-ikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
+.+... .-.++.... ...+......|+|||++.|.+.... ..+.. ....+||+|||||... ..+.+.++
T Consensus 316 ~~~~~~--~~~~s~~~L----~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAEL----KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHHH----HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHH
Confidence 875321 111222222 1223334578999999999752211 11111 1223899999999632 23445564
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+...++|+|||||+...-.+-+ ..|...|+.++.... +.+.
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~~i~~Y~--------------------~~~A--- 430 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGRYLHRYF--------------------ITDA--- 430 (667)
T ss_pred hhCCCCcEEEEeCCCccccccccc--------------ccccCCCCCeEEEee--------------------HHHH---
Confidence 56778999999999753211111 111111111111100 0000
Q ss_pred hhhhhhHhHHhhcCc-cceeEeeec--cccHH-HHHHHHHH-HHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1318 FVLRRLKHKVENELP-EKIERLVRC--EASAY-QKLLMKRV-EENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP-~KiE~vV~c--eLSa~-Qk~LYk~L-ee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
+...+- +.......+ .++.. -...++.. ..............+......+..+..++..
T Consensus 431 ---------I~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------- 494 (667)
T TIGR00348 431 ---------IRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDR------- 494 (667)
T ss_pred ---------hhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHH-------
Confidence 000000 000000000 01000 00001110 0000000000000011111111111111110
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhc-----CCeEEEEeCCCCHH---
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGG--- 1463 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~r-----GikylRLDGSTS~e--- 1463 (2693)
.......+.+...+. ...+.|.+|||..+..+..+.+.|... +...+.++|+...+
T Consensus 495 ---------------~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~ 559 (667)
T TIGR00348 495 ---------------LESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEI 559 (667)
T ss_pred ---------------HHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHH
Confidence 001111222222221 223589999999999988888777543 34556677764432
Q ss_pred ------------------HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-C
Q 000047 1464 ------------------DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-G 1524 (2693)
Q Consensus 1464 ------------------ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-G 1524 (2693)
....++++|.++ .++. |||.++.+.+|+|.+.++++++.-|--. +.++|++||+.|+ +
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~ 636 (667)
T TIGR00348 560 RDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDG 636 (667)
T ss_pred HHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccC
Confidence 234789999764 3344 5677799999999999999999888775 4589999999995 4
Q ss_pred Ccc-cEEEEEEEe
Q 000047 1525 QKR-DVLVLRFET 1536 (2693)
Q Consensus 1525 QkK-eV~VyRLIT 1536 (2693)
..| ...|+.++-
T Consensus 637 ~~K~~g~IvDy~g 649 (667)
T TIGR00348 637 KDKTFGLIVDYRG 649 (667)
T ss_pred CCCCCEEEEECcC
Confidence 434 467777754
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=207.49 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+.+.++...|..|||||......+.|..+|...|+++..|+|. ..+|+..|..|...... ++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 358888888888888899999999999999999999999999999999998 67999999999654443 8999999
Q ss_pred cccccCccc-------cCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQA-------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQa-------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|+|+.. .-+||+++.+-|...|.|+.||++|.|..-....|
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999999988 56999999999999999999999999987655444
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=211.56 Aligned_cols=358 Identities=16% Similarity=0.201 Sum_probs=223.2
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-CchHHHHHHHHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-SSVLPGWESEINFW 1162 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-tSLL~QW~eEfeKw 1162 (2693)
.+....+|+||..+++.+...+.++. ..+|++.||+|||.+||++|..|+..+...+ +|.++- ++|+.|-..+|..|
T Consensus 160 ~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KR-VLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 160 IDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKR-VLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhhe-eeEEechHHHHHHHHHHHHHh
Confidence 44457899999999999998877764 4789999999999999999999998766555 777776 57788989999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-----cccccCccEEEEccccccccccchHHHHH
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-----KLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-----~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
.|...+....... .....+.|+|+||+++....... .+..-.||+||||||||- ..+.++.+
T Consensus 239 ~P~~~~~n~i~~~----------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I 305 (875)
T COG4096 239 LPFGTKMNKIEDK----------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSI 305 (875)
T ss_pred CCCccceeeeecc----------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHH
Confidence 9976655433221 11236899999999998654322 355567999999999993 34445566
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHh-cCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh-
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF-NKPFESNGDNSPDEALLSEEENLLIINRLHQVL- 1315 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F-~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL- 1315 (2693)
..|-...+++|||||-..--..-| .+| +.|...+. |...+
T Consensus 306 ~dYFdA~~~gLTATP~~~~d~~T~------------------~~F~g~Pt~~Ys--------------------leeAV~ 347 (875)
T COG4096 306 LDYFDAATQGLTATPKETIDRSTY------------------GFFNGEPTYAYS--------------------LEEAVE 347 (875)
T ss_pred HHHHHHHHHhhccCcccccccccc------------------cccCCCcceeec--------------------HHHHhh
Confidence 666667788889999432111111 112 23322211 00000
Q ss_pred hhhhhhhhHhHHhhcCccceeE-eeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1316 RPFVLRRLKHKVENELPEKIER-LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~-vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
..|+ .|.+... .+.....-+ -|....+..... .+.. .+ ++
T Consensus 348 DGfL-----------vpy~vi~i~~~~~~~G~---~~~~~serek~~---------------g~~i-~~-------dd-- 388 (875)
T COG4096 348 DGFL-----------VPYKVIRIDTDFDLDGW---KPDAGSEREKLQ---------------GEAI-DE-------DD-- 388 (875)
T ss_pred cccc-----------CCCCceEEeeeccccCc---CcCccchhhhhh---------------cccc-Cc-------cc--
Confidence 0111 1221111 111111100 000000000000 0000 00 00
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcC---C---CeEEEEEcchHHHHHHHHHHhhc----CCe-EEEEeCCCCHH
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT---D---HRVLFFSTMTRLLDVMEDYLTFK----QYR-YLRLDGHTSGG 1463 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkat---G---hKVLIFSQft~tLDILed~L~~r----Gik-ylRLDGSTS~e 1463 (2693)
......-++..+-.....+.+++.|.++... | .|.||||....+++.|...|... +.+ ++.|+|...
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 0000000011111122334445555444333 3 69999999999999999999642 223 456777665
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC-------Cccc-EEEEEEE
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG-------QKRD-VLVLRFE 1535 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG-------QkKe-V~VyRLI 1535 (2693)
+=+..|+.|-. +..+-.|.++.+.+.+|||.+.|-.+||+-.-.+-..+.|.+||+-|+. |.|. ..||.++
T Consensus 467 ~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 467 QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 45667888866 4456678999999999999999999999999999999999999999964 3344 6677765
Q ss_pred e
Q 000047 1536 T 1536 (2693)
Q Consensus 1536 T 1536 (2693)
-
T Consensus 546 ~ 546 (875)
T COG4096 546 D 546 (875)
T ss_pred h
Confidence 4
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=219.30 Aligned_cols=328 Identities=15% Similarity=0.205 Sum_probs=189.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC-
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR- 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs- 1165 (2693)
|..++++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||||+.. +.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 56899999998876664 788899999999999755444433322 2345899999855 58899999988753
Q ss_pred -CcEEEEcCC----hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-
Q 000047 1166 -IHKIVYCGP----PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH- 1239 (2693)
Q Consensus 1166 -LkVIvy~Gs----~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~- 1239 (2693)
+.+.+..|. ..++... ...+..+.++|+|+|+++|.+..+ .+...++++|||||||+|....-..-+.|..
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~-~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEF-LERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHH-HHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 333333322 1223222 223445679999999999987554 4556679999999999986432221111111
Q ss_pred -hc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1240 -YQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1240 -Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
|. ....-++...|..+...++|..+.-| ...+..- ...
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l-----------~~~i~~~-~~~---------------------------- 267 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIREL-----------EEKIAEL-KDK---------------------------- 267 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHH-----------HHhhhhc-ccC----------------------------
Confidence 00 00000011111111112222222222 1111000 000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHH--HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAY--QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~--Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
.....+....+++. ...++..+.. + ..+.. .. .++.+ .|-|+
T Consensus 268 ---------------~~q~ilfSAT~~~~~~~~~l~~~ll~-~-~v~~~-~~-------~~rnI-~~~yi---------- 311 (1176)
T PRK09401 268 ---------------KGVLVVSSATGRPRGNRVKLFRELLG-F-EVGSP-VF-------YLRNI-VDSYI---------- 311 (1176)
T ss_pred ---------------CceEEEEeCCCCccchHHHHhhccce-E-EecCc-cc-------ccCCc-eEEEE----------
Confidence 00000000000000 0000000000 0 00000 00 00110 01111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~t---LDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
....|...|.+++..+ +..+||||+.... ++.|.++|...|+++..+||++ .+.+++|
T Consensus 312 -----------~~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 312 -----------VDEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred -----------EcccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 0114677788887655 4589999998766 9999999999999999999999 2346999
Q ss_pred hCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC------Cccchhhhhhhhccc
Q 000047 1473 NQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW------NPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1473 N~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW------NP~~diQAIGRAHRI 1523 (2693)
.++..+ +||+ |+++++|||++. +.+|||||.|- ....+.++++|+-++
T Consensus 373 ~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 373 EEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 988766 6677 699999999998 89999999998 777888999999754
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=194.78 Aligned_cols=332 Identities=18% Similarity=0.282 Sum_probs=217.6
Q ss_pred HHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-----HHHH
Q 000047 1061 YLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-----YLME 1135 (2693)
Q Consensus 1061 ~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-----~Lle 1135 (2693)
|.....-|..+..+|+..-...|.-+ |-++-.-++ ++...|....||.|||+..|.--. ....
T Consensus 221 FddAFq~~pevmenIkK~GFqKPtPI--------qSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~ 288 (629)
T KOG0336|consen 221 FDDAFQCYPEVMENIKKTGFQKPTPI--------QSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288 (629)
T ss_pred HHHHHhhhHHHHHHHHhccCCCCCcc--------hhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchh
Confidence 33444556666666666555555443 544433233 377889889999999987753211 1111
Q ss_pred hcCCCCC-EEEEecCchHH-HHHHHHHHHC-CCCc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc
Q 000047 1136 TKNDRGP-FLVVVPSSVLP-GWESEINFWA-PRIH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS 1211 (2693)
Q Consensus 1136 ~k~~~gP-~LIVVPtSLL~-QW~eEfeKwa-PsLk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~ 1211 (2693)
.....+| +||+.|+..|. +-+-|..++. ..++ +.+|.|..... ++ .....+++++|+|+..|.+......+.
T Consensus 289 ~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-qi---e~lkrgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 289 REQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-QI---EDLKRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred hhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-HH---HHHhcCceEEeeCCchHhhhhhcCeee
Confidence 1122222 69999987764 4566766553 3444 45555543221 11 223468999999999998766666677
Q ss_pred ccCccEEEEcccccccccc--chHHHHHHhhccccccccc-ccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1212 KIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHRLLLT-GTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1212 kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~RLLLT-GTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
.....|+|||||++|.... -+..+.|..++..+..+|| ||-
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------ 408 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------ 408 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccC------------------------------------
Confidence 7778999999999998754 4666777777776665554 442
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1289 NGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1289 ~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
|--+||+.....++ +.+.++-.+.|.+. ..
T Consensus 409 ----------------------------P~~VrrLa~sY~Ke--p~~v~vGsLdL~a~--------------------~s 438 (629)
T KOG0336|consen 409 ----------------------------PEGVRRLAQSYLKE--PMIVYVGSLDLVAV--------------------KS 438 (629)
T ss_pred ----------------------------chHHHHHHHHhhhC--ceEEEecccceeee--------------------ee
Confidence 00111111111110 00111111111000 00
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
+ .+ ++ .+...+.|++.+..++..+ ....|||||+....++|-|..-|..
T Consensus 439 V-------kQ-----~i------------------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l 487 (629)
T KOG0336|consen 439 V-------KQ-----NI------------------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCL 487 (629)
T ss_pred e-------ee-----eE------------------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhh
Confidence 0 00 00 0111234666666666554 4567999999999999999999999
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1449 rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
.|+....|||.-.+.+|+.+++.|+.+.-. +|++|+.+++|||+.++.+|++||.|-|...|.+|+||++|.|.+-.
T Consensus 488 ~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 488 KGISSQSLHGNREQSDREMALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred cccchhhccCChhhhhHHHHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 999999999999999999999999877544 79999999999999999999999999999999999999999997654
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=218.93 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=85.2
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC---------------------------------CeEEEEeCCCCHHHHHHHHHH
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ---------------------------------YRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG---------------------------------ikylRLDGSTS~eERqeiId~ 1471 (2693)
.++++||||+.+..++.|...|+... +....+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 114567899999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
|+++... +||+|.++++|||+..+|.||+|+.|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9887764 799999999999999999999999999999999999999985
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=203.48 Aligned_cols=312 Identities=16% Similarity=0.230 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC---CCcE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP---RIHK 1168 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP---sLkV 1168 (2693)
+.|..+|..++. +..-|+..--|+|||++...++..-+......--.|||+|+..+ .|.++-|.+.++ ++++
T Consensus 50 kiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 348888876665 66789999999999998755554433333333346999999777 567777887777 6788
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhc-ccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQ-SSH 1244 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lk-a~~ 1244 (2693)
.+|.|........ +.....+|+|-|+++|........+..-+.+++|+|||+.+-...+ .....+..+. .+.
T Consensus 126 svfIGGT~~~~d~----~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQ 201 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL----IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQ 201 (980)
T ss_pred EEEecCchhhhhh----hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhhe
Confidence 8998876654322 3345678999999999887777778888899999999999865443 2333344443 344
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh-hhhhhhh
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR-PFVLRRL 1323 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr-PFLLRRt 1323 (2693)
.++.|||=-+ +|.+ +|.++++ |.++|.-
T Consensus 202 v~a~SATYp~-nLdn--------------------------------------------------~Lsk~mrdp~lVr~n 230 (980)
T KOG4284|consen 202 VAAFSATYPR-NLDN--------------------------------------------------LLSKFMRDPALVRFN 230 (980)
T ss_pred eeEEeccCch-hHHH--------------------------------------------------HHHHHhcccceeecc
Confidence 5667777421 1221 2333332 2222211
Q ss_pred HhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC
Q 000047 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~ 1403 (2693)
-.++. -+--|...+..| . |-+
T Consensus 231 ~~d~~-L~GikQyv~~~~---------------------------------------s-~nn------------------ 251 (980)
T KOG4284|consen 231 ADDVQ-LFGIKQYVVAKC---------------------------------------S-PNN------------------ 251 (980)
T ss_pred cCCce-eechhheeeecc---------------------------------------C-Ccc------------------
Confidence 11110 000000111111 1 100
Q ss_pred hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
..-.+--|++.|-+++..+.- ...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.++.-.. -||
T Consensus 252 sveemrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~---rIL 326 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV---RIL 326 (980)
T ss_pred hHHHHHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE---EEE
Confidence 000111266777777765532 367999999999999999999999999999999999999999999965433 379
Q ss_pred eeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
|||+..++|||-..++.||++|++-+...|.+|||||+|.|.+-
T Consensus 327 VsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 327 VSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred EecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999999753
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=209.24 Aligned_cols=340 Identities=19% Similarity=0.148 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC--C---CCCEEEEecCchHHH-HHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN--D---RGPFLVVVPSSVLPG-WESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~--~---~gP~LIVVPtSLL~Q-W~eEfeKw 1162 (2693)
..|+|.|..++..+.+ +.|.++..+||+|||..|+..+...+.... . .--+|.|.|..-|.+ -...++.|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 4789999999987765 999999999999999999876654443331 1 123799999877755 66677777
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccc--cCccEEEEcccccccc--ccchHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSK--IQWHYIIIDEGHRIKN--ASCKLNAD 1236 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~k--ikWd~VIIDEAHRIKN--~sSKlsra 1236 (2693)
.- ++.+-+-+|+...-. +.......+||+|||++.|.-......+.. -+..+|||||.|.+.+ ..+.++-.
T Consensus 97 ~~~~G~~v~vRhGDT~~~e---r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~ 173 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSE---KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS 173 (814)
T ss_pred HHHcCCccceecCCCChHH---hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhh
Confidence 53 566677777654332 233455789999999999965443322221 2457899999999986 45566655
Q ss_pred HHhh---c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1237 LKHY---Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1237 Lk~L---k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
|.++ . ...||+||||=- ++.++ ..||.+.-- +..
T Consensus 174 LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~------------~~~------------------------- 211 (814)
T COG1201 174 LERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD------------PCE------------------------- 211 (814)
T ss_pred HHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC------------ceE-------------------------
Confidence 5544 3 367899999962 33333 333322100 000
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
-|......+.+..+.++-. .+.
T Consensus 212 -------------Iv~~~~~k~~~i~v~~p~~---------------------------------------~~~------ 233 (814)
T COG1201 212 -------------IVDVSAAKKLEIKVISPVE---------------------------------------DLI------ 233 (814)
T ss_pred -------------EEEcccCCcceEEEEecCC---------------------------------------ccc------
Confidence 0000011111111111100 000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ-YRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG-ikylRLDGSTS~eERqeiId~ 1471 (2693)
.. ..-...+.+.|.++.+....+|||++.+.+.+.+...|...+ ..+..-||+.+.+.|..+-++
T Consensus 234 -----------~~---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 234 -----------YD---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred -----------cc---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHH
Confidence 00 001223334444445555689999999999999999998877 888899999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh-cccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA-HRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA-HRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
|+++.-. .++||..+.+|||+-.+|.||.|.+|-.-...+||+||+ ||+|.... .++|+.+ .++.+...+..
T Consensus 300 lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~ 372 (814)
T COG1201 300 LKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLA 372 (814)
T ss_pred HhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHH
Confidence 9988755 688999999999999999999999999999999999999 66765443 3344555 67766666655
Q ss_pred HHHHHh
Q 000047 1551 KLGVAN 1556 (2693)
Q Consensus 1551 Kl~Li~ 1556 (2693)
+..+..
T Consensus 373 ~~a~~g 378 (814)
T COG1201 373 DLALEG 378 (814)
T ss_pred HHHHhC
Confidence 554443
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-16 Score=204.09 Aligned_cols=328 Identities=15% Similarity=0.174 Sum_probs=198.2
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH---------HHHh---cCCCCCEEEEecCc
Q 000047 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY---------LMET---KNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1083 P~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~---------Lle~---k~~~gP~LIVVPtS 1150 (2693)
|..+....|++.|.+.=+.++..+..+...|+..+||+|||.|.=-++.. .+.. ....+++||++|..
T Consensus 153 ~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prr 232 (675)
T PHA02653 153 PEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRV 232 (675)
T ss_pred CCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHH
Confidence 44555578999888888888888888999999999999999874222221 1111 12235799999985
Q ss_pred hH-HHHHHHHHHHC-----CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccc
Q 000047 1151 VL-PGWESEINFWA-----PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224 (2693)
Q Consensus 1151 LL-~QW~eEfeKwa-----PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAH 1224 (2693)
.+ .+...++.+.. .+..+.+..|..... ... ......+++|+|..... ....++++|||||||
T Consensus 233 eLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~--t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaH 301 (675)
T PHA02653 233 ALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN--TNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hhh--cccCCCCEEEEeCcccc-------cccccCCEEEccccc
Confidence 55 56677776432 234454555544321 111 11225689999854211 123467999999999
Q ss_pred ccccccchHHHHHHhhcc--cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1225 RIKNASCKLNADLKHYQS--SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1225 RIKN~sSKlsraLk~Lka--~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
.+-.....+...++.+.. +..+++|||.-. .... |..+|..|....
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~------------------l~~~~~~p~~I~------------- 349 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDR------------------IKEFFPNPAFVH------------- 349 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHH------------------HHHHhcCCcEEE-------------
Confidence 986655444444443322 356999999721 1222 222222111000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhHHhh-cCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhC
Q 000047 1303 ENLLIINRLHQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICN 1381 (2693)
Q Consensus 1303 e~lliI~RLhkVLrPFLLRRtKkDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICn 1381 (2693)
+.. .+.+-.+..+.....+.+...
T Consensus 350 ------------------------I~grt~~pV~~~yi~~~~~~~~~~~------------------------------- 374 (675)
T PHA02653 350 ------------------------IPGGTLFPISEVYVKNKYNPKNKRA------------------------------- 374 (675)
T ss_pred ------------------------eCCCcCCCeEEEEeecCcccccchh-------------------------------
Confidence 000 000001111100000000000
Q ss_pred CccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDG 1458 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~r--GikylRLDG 1458 (2693)
|+ ...|..++ ..+..+ ...+..+|||+.....++.+.+.|... ++.+..|||
T Consensus 375 --y~----------------------~~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG 429 (675)
T PHA02653 375 --YI----------------------EEEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHG 429 (675)
T ss_pred --hh----------------------HHHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccC
Confidence 00 00011111 222222 224568999999999999999999876 799999999
Q ss_pred CCCHHHHHHHHHHH-hCCCCCceEEEeeecccccccCccccCEEEEecC---C---------CCccchhhhhhhhcccCC
Q 000047 1459 HTSGGDRGALIDKF-NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---D---------WNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1459 STS~eERqeiId~F-N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp---p---------WNP~~diQAIGRAHRIGQ 1525 (2693)
.++.. ++.+++| +.+. +-+||+|+++++||++.++++||.++. + .+...+.||.||++|.
T Consensus 430 ~Lsq~--eq~l~~ff~~gk---~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-- 502 (675)
T PHA02653 430 KVPNI--DEILEKVYSSKN---PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-- 502 (675)
T ss_pred CcCHH--HHHHHHHhccCc---eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--
Confidence 99864 5677787 3433 348999999999999999999999982 2 2566789999999998
Q ss_pred cccEEEEEEEeCCCHH
Q 000047 1526 KRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1526 kKeV~VyRLIT~gSIE 1541 (2693)
++-.+|+|++.....
T Consensus 503 -~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 503 -SPGTYVYFYDLDLLK 517 (675)
T ss_pred -CCCeEEEEECHHHhH
Confidence 457888999887653
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=194.48 Aligned_cols=327 Identities=21% Similarity=0.288 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC-----------CCCC-EEEEecCchH-HHHHHH
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN-----------DRGP-FLVVVPSSVL-PGWESE 1158 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~-----------~~gP-~LIVVPtSLL-~QW~eE 1158 (2693)
+.|...|..++. .....|-|.|||+|||+...-.|.. +.+... ...| .|||+|+..| .|...-
T Consensus 206 ~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~H 282 (731)
T KOG0347|consen 206 EIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQH 282 (731)
T ss_pred cchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHH
Confidence 335444444432 2256678999999999876544443 222111 1122 5999999665 666666
Q ss_pred HHHHC--CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc--cccc-CccEEEEcccccc--ccccc
Q 000047 1159 INFWA--PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK--LSKI-QWHYIIIDEGHRI--KNASC 1231 (2693)
Q Consensus 1159 feKwa--PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~--L~ki-kWd~VIIDEAHRI--KN~sS 1231 (2693)
|...+ +.+++..+.|.-...+ ++.+.....+|||+|+++|...+.... +.++ +..++||||++|| +++-.
T Consensus 283 l~ai~~~t~i~v~si~GGLavqK---QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQK---QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred HHHhccccCeEEEEeechhHHHH---HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHH
Confidence 66554 5788888888766544 233445689999999999965443222 2222 3579999999999 34444
Q ss_pred hHHHHHHhhc------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1232 KLNADLKHYQ------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1232 KlsraLk~Lk------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
.+.+.|..+. .+..|+.|||-- |. ...|..........+ ....
T Consensus 360 Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~--------------~~~~~~~~~k~~~k~-----~~~~ 408 (731)
T KOG0347|consen 360 ELSKLLKHLNEEQKNRQRQTLVFSATLT------------LV--------------LQQPLSSSRKKKDKE-----DELN 408 (731)
T ss_pred HHHHHHHHhhhhhcccccceEEEEEEee------------hh--------------hcChhHHhhhccchh-----hhhh
Confidence 5555555443 122266666641 00 000000000000000 0000
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
..+..| ++ .+...=+++ +| ++++. ......+.+-+-.| .| +
T Consensus 409 ~kiq~L---mk---------~ig~~~kpk---ii--D~t~q--------------------~~ta~~l~Es~I~C-~~-~ 449 (731)
T KOG0347|consen 409 AKIQHL---MK---------KIGFRGKPK---II--DLTPQ--------------------SATASTLTESLIEC-PP-L 449 (731)
T ss_pred HHHHHH---HH---------HhCccCCCe---eE--ecCcc--------------------hhHHHHHHHHhhcC-Cc-c
Confidence 001111 11 111111111 11 11111 11122222223333 11 1
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
+-|. | |.-+| ..-..|.||||+.++.+..|.-+|...++..+.||..|.+.+|
T Consensus 450 ------eKD~-----y-------------lyYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 450 ------EKDL-----Y-------------LYYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQR 502 (731)
T ss_pred ------ccce-----e-------------EEEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 0000 0 00011 1235689999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCC
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQ 1525 (2693)
-+.+++|.+... .+||+|+++.+|||++.+++||+|..|..-..|++|-||+.|.+.
T Consensus 503 LknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 503 LKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC
Confidence 999999976544 489999999999999999999999999999999999999999875
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=190.97 Aligned_cols=322 Identities=18% Similarity=0.240 Sum_probs=208.5
Q ss_pred cccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHH-HHhcC----CCCC-EEEEec
Q 000047 1075 IKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL-METKN----DRGP-FLVVVP 1148 (2693)
Q Consensus 1075 ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~L-le~k~----~~gP-~LIVVP 1148 (2693)
+.+.--+.|..+ |..+|..++. +.+.+.-.-||+|||...+..+... +..+. ..+| .+|+||
T Consensus 34 i~~lG~ekpTlI--------Qs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvP 101 (569)
T KOG0346|consen 34 ITKLGWEKPTLI--------QSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVP 101 (569)
T ss_pred HHHhCcCCcchh--------hhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEec
Confidence 333344566654 7888887776 7777777899999999887655543 33322 2233 599999
Q ss_pred CchH-HHHHHHHH---HHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc-ccccCccEEEEcc
Q 000047 1149 SSVL-PGWESEIN---FWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK-LSKIQWHYIIIDE 1222 (2693)
Q Consensus 1149 tSLL-~QW~eEfe---KwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~-L~kikWd~VIIDE 1222 (2693)
+..| .|....|. .+|+ .++++-...+..+.. .........+|||+|+..+.+...... .......++|+||
T Consensus 102 TkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv---~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 102 TKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV---NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH---HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 8666 45555554 4555 455554443332221 112345788999999999987664444 3444678999999
Q ss_pred ccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1223 AHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
|+-+...+. .++
T Consensus 179 ADLllsfGY-------------------------------------------eed------------------------- 190 (569)
T KOG0346|consen 179 ADLLLSFGY-------------------------------------------EED------------------------- 190 (569)
T ss_pred hhhhhhccc-------------------------------------------HHH-------------------------
Confidence 987632220 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHh-hC
Q 000047 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNI-CN 1381 (2693)
Q Consensus 1303 e~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKI-Cn 1381 (2693)
|.+ +...||+.. |..|+. ..+...+..|.++ |.
T Consensus 191 --------lk~-------------l~~~LPr~~-----------Q~~LmS--------------ATl~dDv~~LKkL~l~ 224 (569)
T KOG0346|consen 191 --------LKK-------------LRSHLPRIY-----------QCFLMS--------------ATLSDDVQALKKLFLH 224 (569)
T ss_pred --------HHH-------------HHHhCCchh-----------hheeeh--------------hhhhhHHHHHHHHhcc
Confidence 100 112344221 111110 1122333445444 44
Q ss_pred CccccchhhhhhhccCCCCCCChhh---hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIV---RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lv---r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.|.+....+.+.. +...+...+ ..-.||.+|.-+|+ |.--..|.|||.+..+.+-.|.-+|+..|++.+.|+|
T Consensus 225 nPviLkl~e~el~---~~dqL~Qy~v~cse~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNs 300 (569)
T KOG0346|consen 225 NPVILKLTEGELP---NPDQLTQYQVKCSEEDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNS 300 (569)
T ss_pred CCeEEEeccccCC---CcccceEEEEEeccchhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcc
Confidence 5666554443332 111111222 22347777776664 3333569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeec--------------------------c---------cccccCccccCEEEE
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIR--------------------------A---------GGVGVNLQAADTVII 1503 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTr--------------------------A---------GGeGLNLQaADtVIi 1503 (2693)
.++..-|..+|++||.+--+ +||+|+ . .++|||++.+.+||+
T Consensus 301 eLP~NSR~Hii~QFNkG~Yd---ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN 377 (569)
T KOG0346|consen 301 ELPANSRCHIIEQFNKGLYD---IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN 377 (569)
T ss_pred cccccchhhHHHHhhCccee---EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee
Confidence 99999999999999887543 788888 1 137999999999999
Q ss_pred ecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1504 yDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
||+|-++..|++|+||+.|-|.+-.+.-|
T Consensus 378 FD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 378 FDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred cCCCCchHHHHHhccccccCCCCCceEEE
Confidence 99999999999999999998866554433
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=192.63 Aligned_cols=324 Identities=19% Similarity=0.242 Sum_probs=218.7
Q ss_pred hccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1073 HSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1073 h~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
..|.|.-.+.|+ |.|.+.+.-.+. +.+.+.-.-.|+|||-..+-.+...+..+...--.+|+||...+
T Consensus 98 mgIfe~G~ekPS--------PiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 98 MGIFEKGFEKPS--------PIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTREL 165 (459)
T ss_pred HHHHHhccCCCC--------Cccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchh
Confidence 345555555554 447777765554 33333346789999987665555554444444346999998665
Q ss_pred ----HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1153 ----PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1153 ----~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
.|...++.++. ++++.+..|....|+.+++ .....+++|.|+.++.....+..-...++.++|+|||+++..
T Consensus 166 ALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hHHHHHHHHHHhccc-CeEEEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc
Confidence 34556666776 4888888888877776543 246889999999999887666666666789999999999855
Q ss_pred ccch--HHHHHHhhc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1229 ASCK--LNADLKHYQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1229 ~sSK--lsraLk~Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
...+ ..+.+..+. .+..|+.|||--
T Consensus 242 ~~F~~~~e~li~~lP~~rQillySATFP---------------------------------------------------- 269 (459)
T KOG0326|consen 242 VDFQPIVEKLISFLPKERQILLYSATFP---------------------------------------------------- 269 (459)
T ss_pred hhhhhHHHHHHHhCCccceeeEEecccc----------------------------------------------------
Confidence 3321 112222221 222233344320
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
-.++.||-|.++ .||.
T Consensus 270 -------~tVk~Fm~~~l~---------------------------------------------------------kPy~ 285 (459)
T KOG0326|consen 270 -------LTVKGFMDRHLK---------------------------------------------------------KPYE 285 (459)
T ss_pred -------hhHHHHHHHhcc---------------------------------------------------------Ccce
Confidence 001122222221 2222
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
....++-. +..-..+..++...-|+-.|..++.+|.- ...||||+.+..+++|...+...||...++|..|.++.|
T Consensus 286 INLM~eLt--l~GvtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 286 INLMEELT--LKGVTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHR 361 (459)
T ss_pred eehhhhhh--hcchhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhh
Confidence 11111000 00000011234445688888888887754 368999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
..+...|+++... .|++|+..-+|||+|+.++||+||.+.|+..|++|+||.+|.|- --..+.||+-
T Consensus 362 NrVFHdFr~G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh--lGlAInLity 428 (459)
T KOG0326|consen 362 NRVFHDFRNGKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH--LGLAINLITY 428 (459)
T ss_pred hhhhhhhhccccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC--cceEEEEEeh
Confidence 9999999887654 68899999999999999999999999999999999999999994 3345556553
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=185.88 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ--YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG--ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
.+.|+||||+....++.|...|...+ +.+..++|.++..+|.+.. .. .+||+|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 22 28999999999999975 4666
Q ss_pred EecCCCCccchhhhhhhhc
Q 000047 1503 IFDTDWNPQVDLQAQARAH 1521 (2693)
Q Consensus 1503 iyDppWNP~~diQAIGRAH 1521 (2693)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 67 678899999999985
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=193.57 Aligned_cols=303 Identities=18% Similarity=0.284 Sum_probs=205.4
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|-..|..++.-+..=.... .+-+|-.++|+|||++|+..++..++.+.. +.+.+|+.+| .|....|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q---~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ---AALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe---eEEeccHHHHHHHHHHHHHHHhhh
Confidence 467788999998776533322 345888999999999998777777665443 6899999988 678999999997
Q ss_pred -CCcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 -RIHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++++.+..|... .|+ .....+..+..++||-|+..|... ..-.+..+|||||-||+.-. ....|+.-
T Consensus 338 ~~i~V~lLtG~~kgk~r~-~~l~~l~~G~~~ivVGTHALiQd~-----V~F~~LgLVIiDEQHRFGV~---QR~~L~~KG 408 (677)
T COG1200 338 LGIRVALLTGSLKGKARK-EILEQLASGEIDIVVGTHALIQDK-----VEFHNLGLVIIDEQHRFGVH---QRLALREKG 408 (677)
T ss_pred cCCeEEEeecccchhHHH-HHHHHHhCCCCCEEEEcchhhhcc-----eeecceeEEEEeccccccHH---HHHHHHHhC
Confidence 577777777643 333 334567788999999999998753 23345689999999998432 23333332
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. .++.|.||||||..++.= ..|+ +.+
T Consensus 409 ~~~Ph~LvMTATPIPRTLAl--------------------t~fg-------Dld-------------------------- 435 (677)
T COG1200 409 EQNPHVLVMTATPIPRTLAL--------------------TAFG-------DLD-------------------------- 435 (677)
T ss_pred CCCCcEEEEeCCCchHHHHH--------------------HHhc-------ccc--------------------------
Confidence 3 579999999998766531 0011 100
Q ss_pred hhhhHhHHhhcCccceeEee-eccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1320 LRRLKHKVENELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV-~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
--+.++||+...-+. .|-.......+|+.+.+.+
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei---------------------------------------- 470 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYERIREEI---------------------------------------- 470 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHHHHHHH----------------------------------------
Confidence 013456776532222 1111122223343333221
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHh--hcCCeEEEEeCCCCHHHHHHH
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLT--FKQYRYLRLDGHTSGGDRGAL 1468 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~--~rGikylRLDGSTS~eERqei 1468 (2693)
..|+++.+.|.-.+ .+..+...|. ..++++..+||.|+.++++++
T Consensus 471 -------------------------~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 471 -------------------------AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred -------------------------HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 13444444443221 1222333332 236778999999999999999
Q ss_pred HHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccE
Q 000047 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1469 Id~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+.+|+++..+ +|+||.+...|||+++|..+||+|.. +--.+..|--||++|=+...-|
T Consensus 526 M~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 526 MEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 9999998887 89999999999999999999999987 5788899999999996654433
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=200.83 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
...+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -|||+|+++++||++.++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 47999999999999999999999976543 3799999999999999999999
Q ss_pred EecCC----CCccc--------------hhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1503 IFDTD----WNPQV--------------DLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1503 iyDpp----WNP~~--------------diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.++.+ |||.. +.||.||++|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99976 56655 68999999998 456789998864
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=181.72 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+++|..+..- .. =...||||+.+..+.+|...|...|+.+..|+|.+..++|..++++|+.+... +||+|.++
T Consensus 316 ~K~~~l~~lyg~-~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ 390 (477)
T KOG0332|consen 316 DKYQALVNLYGL-LT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVC 390 (477)
T ss_pred hHHHHHHHHHhh-hh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechh
Confidence 377777774432 22 23679999999999999999999999999999999999999999999998876 89999999
Q ss_pred ccccCccccCEEEEecCCC------CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1490 GVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppW------NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.+|||.+..+.||+||+|- .+..|++||||++|.|.+ -.++.|+..+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk--G~a~n~v~~~ 443 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK--GLAINLVDDK 443 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc--ceEEEeeccc
Confidence 9999999999999999984 578999999999999954 3455566553
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-15 Score=198.18 Aligned_cols=338 Identities=19% Similarity=0.205 Sum_probs=229.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C-
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P- 1164 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P- 1164 (2693)
.||.||.++++.+.+ +.+.|+.-.||+|||...+..|...+...... ..|+|-|+.-| .+..+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999987775 89999999999999999988777666554444 58999997655 55888888875 3
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHh----ccCCCcccccCccEEEEcccccccc-ccchHHHHHHh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMN----KHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKH 1239 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik----~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~ 1239 (2693)
.+.+..|.|.....++ ..+.....+||||+|++|.- ..+...+...+++||||||+|-.+. ..|...-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r---~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEER---RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHH---HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 5678889997654332 13445789999999998854 2233344445599999999999877 34444444444
Q ss_pred hc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1240 YQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1240 Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
+. ....|+.|||- .+..|+. .+.|...+...-
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--~np~e~~-----------------~~l~~~~f~~~v--------------------- 261 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--ANPGEFA-----------------EELFGRDFEVPV--------------------- 261 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--cChHHHH-----------------HHhcCCcceeec---------------------
Confidence 32 23347777775 2222211 111222111100
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
.+..-|.-..+++....-.....
T Consensus 262 ---------------~~~g~~~~~~~~~~~~p~~~~~~------------------------------------------ 284 (851)
T COG1205 262 ---------------DEDGSPRGLRYFVRREPPIRELA------------------------------------------ 284 (851)
T ss_pred ---------------cCCCCCCCceEEEEeCCcchhhh------------------------------------------
Confidence 00001111111111110000000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH----HHHhhcC----CeEEEEeCCCCHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQ----YRYLRLDGHTSGG 1463 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILe----d~L~~rG----ikylRLDGSTS~e 1463 (2693)
.. -...++..+..++..+...+-+.|+|+.+...+..+. ..+...+ ..+..+.|++..+
T Consensus 285 ------------~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 285 ------------ES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred ------------hh-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 00 0123566677777778888999999999999998886 4444445 5688889999999
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
+|.++...|+.++.. ++++|.++..||++...|.||.+-.|- .-..+.|+.||++|-+| ...++...-.+-++.
T Consensus 352 er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~~~~~d~ 426 (851)
T COG1205 352 ERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ--ESLVLVVLRSDPLDS 426 (851)
T ss_pred HHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC--CceEEEEeCCCccch
Confidence 999999999988876 899999999999999999999999999 78999999999999994 444444444777887
Q ss_pred HHHHHHHH
Q 000047 1543 QVRASAEH 1550 (2693)
Q Consensus 1543 kIleraek 1550 (2693)
.....-..
T Consensus 427 yy~~~p~~ 434 (851)
T COG1205 427 YYLRHPEE 434 (851)
T ss_pred hhhhCcHh
Confidence 76654443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=196.95 Aligned_cols=367 Identities=19% Similarity=0.209 Sum_probs=202.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPsLk 1167 (2693)
..|.++|.++++.+.... .+...+|...||+|||..++.++...+.. .+.+||++|.. +..||.+.|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999887632 34568899999999999998877766654 24589999985 56889999998874 56
Q ss_pred EEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHH--HHH---H
Q 000047 1168 KIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLN--ADL---K 1238 (2693)
Q Consensus 1168 VIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKls--raL---k 1238 (2693)
+.+++|.. .++.+.+. .+..+..+|||+|+..+.. ...++.+|||||+|...-. ....+ +.+ +
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~~-------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALFL-------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhcc-------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 77777653 33433332 2445678999999987642 2345789999999986421 11111 111 1
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.......|++||||. ++.++... .+.+.- -.+.+.+.
T Consensus 290 a~~~~~~~il~SATps---~~s~~~~~----~g~~~~-~~l~~r~~---------------------------------- 327 (679)
T PRK05580 290 AKLENIPVVLGSATPS---LESLANAQ----QGRYRL-LRLTKRAG---------------------------------- 327 (679)
T ss_pred hhccCCCEEEEcCCCC---HHHHHHHh----ccceeE-EEeccccc----------------------------------
Confidence 224456788999994 22222110 000000 00000000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccc-------cHHHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCcccc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEA-------SAYQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceL-------Sa~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
...+|. + .++.... ...-..+++.+.+.+..... .+.+... ... +..-|.+....
T Consensus 328 ----------~~~~p~-v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~-~~~-~C~~Cg~~~~C 393 (679)
T PRK05580 328 ----------GARLPE-V-EIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYA-PFL-LCRDCGWVAEC 393 (679)
T ss_pred ----------cCCCCe-E-EEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-Cce-EhhhCcCccCC
Confidence 000110 0 0000000 00112233444333321100 0000000 011 11122222111
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCC--H
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTS--G 1462 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS--~ 1462 (2693)
..-...+. .......-....||....+-...+.+ |.. .|..+..-.+.+++.|... ++++.++|+.+. .
T Consensus 394 ~~C~~~l~--~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 394 PHCDASLT--LHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCCCcee--EECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 00000000 00000000111222211111111111 111 2444455566777777654 889999999986 4
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC---CCc---------cchhhhhhhhcccCCcccEE
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD---WNP---------QVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp---WNP---------~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+++++++++|.+++.+ +||+|+....|+|++.++.|+++|.| +.| ..+.|+.||++|.+....|.
T Consensus 467 ~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 6799999999987776 89999999999999999999988776 223 57899999999988776666
Q ss_pred EEEE
Q 000047 1531 VLRF 1534 (2693)
Q Consensus 1531 VyRL 1534 (2693)
+...
T Consensus 544 iqT~ 547 (679)
T PRK05580 544 IQTY 547 (679)
T ss_pred EEeC
Confidence 5543
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=199.10 Aligned_cols=321 Identities=18% Similarity=0.249 Sum_probs=207.2
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCC-EEEEecCchH-HHHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGP-FLVVVPSSVL-PGWESEINF 1161 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP-~LIVVPtSLL-~QW~eEfeK 1161 (2693)
....++.|..++..+.+ ++.+|....+|+|||+..+..+....... ...|| .||+||+.-+ .|..+++.+
T Consensus 385 y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 35778889888887776 88999999999999998855444322221 12356 4999998665 455555555
Q ss_pred HC--CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC---cccccCccEEEEcccccccccc--chHH
Q 000047 1162 WA--PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP---KLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1162 wa--PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~---~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
|+ -+++++..+|.......+ ..+. ....|+|+|...++...... .....+..|+|+|||+||-... -+.+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qi--aelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQI--AELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHhhcCceEEEecCCccHHHHH--HHHh-cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 54 245555544544333322 2233 34899999999887543221 2333456799999999984211 1111
Q ss_pred HHHHhhccccc-ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHR-LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~Lka~~R-LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+.|..+...+- ++.+|| |
T Consensus 538 ~Ii~nlrpdrQtvlfSat------------------------------f------------------------------- 556 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSAT------------------------------F------------------------------- 556 (997)
T ss_pred hHHhhcchhhhhhhhhhh------------------------------h-------------------------------
Confidence 12211111000 000111 0
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
|-.+.-+...|.. +|-. .++.. .-.+|+.+ .+.-.+|.
T Consensus 557 ---pr~m~~la~~vl~-~Pve--iiv~~-----~svV~k~V-------------------~q~v~V~~------------ 594 (997)
T KOG0334|consen 557 ---PRSMEALARKVLK-KPVE--IIVGG-----RSVVCKEV-------------------TQVVRVCA------------ 594 (997)
T ss_pred ---hHHHHHHHHHhhc-CCee--EEEcc-----ceeEeccc-------------------eEEEEEec------------
Confidence 0011122222333 3321 11100 00000000 00000110
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.-..||..|.++|..+.. ..++|||++....+|.|..-|...||....|||+.++.+|...|.+|+
T Consensus 595 -------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK 660 (997)
T KOG0334|consen 595 -------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK 660 (997)
T ss_pred -------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh
Confidence 023489999999988665 779999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
++.. .+|++|++...|||......||+||.+--...|.+|.||++|.|.+- ..|-|++.
T Consensus 661 ~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 661 NGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred ccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 7655 49999999999999999999999999999999999999999999776 45555555
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-15 Score=195.55 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=92.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
.+..+|||+.....++.+.+.|.. .++.++.|||.++.++|.+++..|..+.. -|||+|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r---kVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR---KVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe---EEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 57889999999999999999999965543 489999999999999999999
Q ss_pred EEecCC----CCcc--------------chhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1502 IIFDTD----WNPQ--------------VDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1502 IiyDpp----WNP~--------------~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|.++.. |+|. .++||.||++|. .+-.+|+|+++..
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 997765 3332 579999999997 3668899988654
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=197.70 Aligned_cols=314 Identities=19% Similarity=0.289 Sum_probs=181.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC-
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR- 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs- 1165 (2693)
+..+.++|..++..++. +.+.++...||+|||..++.++.++... ...+|||+|+..| .|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34788999998877664 7788999999999998665555444322 3458999998555 7899999988753
Q ss_pred -CcE---EEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1166 -IHK---IVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1166 -LkV---Ivy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+.. .+|+|...... ......+..+.++|+|+|+++|.+..+. +.. ++++|||||||+|.......-+.|.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~-- 223 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLK-- 223 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHH--
Confidence 222 24666543222 1112334456799999999999875432 333 7999999999999653322222221
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
|.|=- ...+..+|.+++. +.. . .....++++..+++
T Consensus 224 -------llGF~-~e~i~~il~~~~~---~~~--------------------~---------~~~~~~~~~~~~~~---- 259 (1171)
T TIGR01054 224 -------LLGFS-EELIEKAWKLIRL---RLK--------------------L---------YRALHAKKRLELLE---- 259 (1171)
T ss_pred -------HcCCC-HHHHHHHHHHhhh---ccc--------------------c---------chHHHHHHHHHHHH----
Confidence 11100 0001111211111 000 0 00001122222211
Q ss_pred hhhHhHHhhcCcccee-EeeeccccH--H--HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1321 RRLKHKVENELPEKIE-RLVRCEASA--Y--QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE-~vV~ceLSa--~--Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
.+|.+.. .++.+..|. . ...+++.+ +. +..... ...++.+ .|.|
T Consensus 260 ---------~~~~~~q~~li~~SAT~~p~~~~~~l~r~l---l~-~~v~~~------~~~~r~I-~~~~----------- 308 (1171)
T TIGR01054 260 ---------AIPGKKRGCLIVSSATGRPRGKRAKLFREL---LG-FEVGGG------SDTLRNV-VDVY----------- 308 (1171)
T ss_pred ---------hhhhccCcEEEEEeCCCCccccHHHHcccc---cc-eEecCc------cccccce-EEEE-----------
Confidence 1222211 122222221 0 01111111 00 000000 0001110 0111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcch---HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT---RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft---~tLDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
+....+...|.++|..+ +..+|||++.. ..++.|..+|...|+++..+||.++ +..+++|
T Consensus 309 ----------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~F 371 (1171)
T TIGR01054 309 ----------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKF 371 (1171)
T ss_pred ----------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHH
Confidence 11112345666777654 56899999998 9999999999999999999999986 3789999
Q ss_pred hCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC
Q 000047 1473 NQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW 1508 (2693)
Q Consensus 1473 N~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW 1508 (2693)
+++..+ +||+ |+++++||||+. +++|||||+|-
T Consensus 372 r~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 372 AEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 988766 6777 599999999999 89999999994
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=157.61 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+..|..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+++.. .+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChh
Confidence 58999999999887678999999999999999999999889999999999999999999999987763 488899999
Q ss_pred ccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
++|+|++.+++||+++++|++..++|++||++|.|++..|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-16 Score=167.70 Aligned_cols=157 Identities=27% Similarity=0.372 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHHHHHhhcC---CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ---LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~---lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP 1164 (2693)
.+||+||.+++.-++..+... .+++|..+||+|||++++.++.++.. ++|||||. +++.||..+|..+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 479999999999999887765 88999999999999999998888865 69999998 777899999988876
Q ss_pred CCcEEEEcCChH----------HHHHHHHhhhhcCCccEEEEcHHHHHhccCC-----------CcccccCccEEEEccc
Q 000047 1165 RIHKIVYCGPPE----------ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-----------PKLSKIQWHYIIIDEG 1223 (2693)
Q Consensus 1165 sLkVIvy~Gs~~----------eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-----------~~L~kikWd~VIIDEA 1223 (2693)
............ ...............++++++|+.+...... ..+....+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 554443221100 0000011223356789999999999764321 1234457899999999
Q ss_pred cccccccchHHHHHHhhcccccccccccCC
Q 000047 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1224 HRIKN~sSKlsraLk~Lka~~RLLLTGTPL 1253 (2693)
|++.+... ++.+..+...++|+|||||.
T Consensus 156 H~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 99866543 55555588889999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=206.79 Aligned_cols=340 Identities=18% Similarity=0.296 Sum_probs=194.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP-- 1164 (2693)
|..++++|..++..++. +.+.++..+||+|||...+.++.++.. ....+|||+|+.. +.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34689999999988776 778899999999999844333333321 1234899999855 5788888888764
Q ss_pred --CCcEEEEcCChHHHHH-HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1165 --RIHKIVYCGPPEERRR-LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~-l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
++.+..++|......+ .....+..+.++|+|+|++.+...... +...++++|||||||+|..+.-..-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~~~~i~~iVVDEAD~ml~~~knid~~L~--- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MKHLKFDFIFVDDVDAFLKASKNIDRSLQ--- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--HhhCCCCEEEEECceeccccccccchhhh---
Confidence 3556677776543322 112234456799999999988764432 23367899999999999543211111111
Q ss_pred ccccccccccCCCCCHH-HHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLE-ELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLe-ELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
|-| +...+. ..|.++... +. ... +.....+.+|...+
T Consensus 225 ------llG--F~~e~~~~~~~il~~~-----------------~~---~~~---------~~~~~~~~~l~~~~----- 262 (1638)
T PRK14701 225 ------LLG--FYEEIIEKAWKIIYLK-----------------KQ---GNI---------EDAMEKREILNKEI----- 262 (1638)
T ss_pred ------cCC--ChHHHHHHHHHhhhcc-----------------cc---ccc---------chhhhhhhhhhhhh-----
Confidence 000 000000 001111100 00 000 00000112222221
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHH-HHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQK-LLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk-~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
..+|......+.+..|...+ ...+.+.+.+. +...... ..++.+ .|.|+.
T Consensus 263 --------~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~-f~v~~~~------~~lr~i-~~~yi~------------- 313 (1638)
T PRK14701 263 --------EKIGNKIGCLIVASATGKAKGDRVKLYRELLG-FEVGSGR------SALRNI-VDVYLN------------- 313 (1638)
T ss_pred --------hhcCCCccEEEEEecCCCchhHHHHHhhcCeE-EEecCCC------CCCCCc-EEEEEE-------------
Confidence 12233322223222221110 01111111000 0000000 000000 011100
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~t---LDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.....| ..|.++|..+ +..+||||+.... ++.|.++|...|+++..+||. |.+.+++|.+++
T Consensus 314 ------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~ 378 (1638)
T PRK14701 314 ------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE 378 (1638)
T ss_pred ------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC
Confidence 011113 4566777654 5689999987664 589999999999999999994 999999999888
Q ss_pred CCceEEEeee----cccccccCccc-cCEEEEecCCC---Cccchhhhh-------------hhhcccCCccc
Q 000047 1477 SPFFIFLLSI----RAGGVGVNLQA-ADTVIIFDTDW---NPQVDLQAQ-------------ARAHRIGQKRD 1528 (2693)
Q Consensus 1477 Sd~fVfLLST----rAGGeGLNLQa-ADtVIiyDppW---NP~~diQAI-------------GRAHRIGQkKe 1528 (2693)
.+ +||+| +++++|||++. +.+|||||.|- +...+.|.. ||++|-|..-+
T Consensus 379 ~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 379 ID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred CC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 76 78888 57889999998 99999999998 777676766 99999887544
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=180.01 Aligned_cols=315 Identities=18% Similarity=0.253 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH-HHHHHHHCC--CCcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW-ESEINFWAP--RIHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW-~eEfeKwaP--sLkVI 1169 (2693)
..|..||--.+. +.+.+.-...|+|||.+.+..++..+.......=+||++|...|.+. ..-+..|.. +.++.
T Consensus 51 aIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 347777766654 88899989999999999776666655433333336999999988664 333444444 34555
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-cccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-SHRL 1246 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~~RL 1246 (2693)
.+.|....+... ..+.....+|++.|+.++...+++..|......+.|+|||..|+.. ..+.+..+..+.. -..+
T Consensus 127 ~~igg~~~~~~~--~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~ 204 (397)
T KOG0327|consen 127 ACIGGTNVRRED--QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVV 204 (397)
T ss_pred eecCcccchhhh--hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhe
Confidence 556644433221 2234456899999999998877888888888999999999998653 3455555555543 2445
Q ss_pred cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 000047 1247 LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK 1326 (2693)
Q Consensus 1247 LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkD 1326 (2693)
++|||=- .|+. .+-+.|+
T Consensus 205 l~SAT~p----~~vl---------------------------------------------------~vt~~f~------- 222 (397)
T KOG0327|consen 205 LLSATMP----SDVL---------------------------------------------------EVTKKFM------- 222 (397)
T ss_pred eecccCc----HHHH---------------------------------------------------HHHHHhc-------
Confidence 6666631 1100 0000000
Q ss_pred HhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1327 VENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1327 VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
..-..+ .+.-...+ |.- ..+-|.. +
T Consensus 223 ------~~pv~i-~vkk~~lt----------------------------l~g-ikq~~i~-------------------v 247 (397)
T KOG0327|consen 223 ------REPVRI-LVKKDELT----------------------------LEG-IKQFYIN-------------------V 247 (397)
T ss_pred ------cCceEE-Eecchhhh----------------------------hhh-eeeeeee-------------------c
Confidence 000000 00000000 000 0000100 0
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
.-..|+..|+++.. .-...+|||+..+-++.|.+.|..+++....++|.+.+.+|..+++.|+.+.+. +||+|
T Consensus 248 ~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlItt 320 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITT 320 (397)
T ss_pred cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeec
Confidence 01128888888887 345789999999999999999999999999999999999999999999998887 89999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+..++|||++.++.||+||.|-|...|++|+||++|.|.+ -.+..++++.+
T Consensus 321 dl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 321 DLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred cccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 9999999999999999999999999999999999999954 45556666543
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=183.39 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=88.4
Q ss_pred EEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHHHhhhhcCC
Q 000047 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPP--EERRRLFKEKIVHQK 1190 (2693)
Q Consensus 1114 LADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~--~eRk~l~ke~i~~~k 1190 (2693)
|...||+|||.+++.++.+.+..+ +.+|||+|. ++..||.+.|+++++ ..+.++++.. .+|.+.+. .+..+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~-~~~~g~ 76 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWR-KVKNGE 76 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHH-HHHcCC
Confidence 566899999999988887776542 348999997 566889999998774 4566676643 34444443 344567
Q ss_pred ccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc--ccchHH------HHHHhhcccccccccccCC
Q 000047 1191 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLN------ADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1191 fdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN--~sSKls------raLk~Lka~~RLLLTGTPL 1253 (2693)
.+|||+|+..+.. ...++++|||||.|...- .....+ .....+.....|++||||.
T Consensus 77 ~~IVVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 77 ILVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCEEECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 8999999987743 233579999999998642 222111 1122344567789999994
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=190.60 Aligned_cols=311 Identities=22% Similarity=0.198 Sum_probs=196.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC-CCCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA-PRIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa-PsLk 1167 (2693)
+|++.|..++.-.+. .+.|.|+|..||+|||++|+..|...+... .++++.|||. +|..+-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999865543 278999999999999999987777655443 5679999997 55566788888553 3789
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-cch----HHHHHHhhcc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-SCK----LNADLKHYQS 1242 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-sSK----lsraLk~Lka 1242 (2693)
|..+.|+..... ....+++|+||||+.+-....+........++|||||+|.+... ... ....++.+..
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 999999876443 12368999999999885322222223446799999999999765 211 1111222222
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
-+.++||||- .| ..+|..|.+..... ...+|.-++
T Consensus 180 ~~rivgLSATl--pN------------------~~evA~wL~a~~~~------------------------~~~rp~~l~ 215 (766)
T COG1204 180 LIRIVGLSATL--PN------------------AEEVADWLNAKLVE------------------------SDWRPVPLR 215 (766)
T ss_pred ceEEEEEeeec--CC------------------HHHHHHHhCCcccc------------------------cCCCCcccc
Confidence 4668899996 23 34444444331100 001111111
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
|- .|.. ..++.+. +..+
T Consensus 216 ~~-------v~~~-~~~~~~~-------------------~~~k------------------------------------ 232 (766)
T COG1204 216 RG-------VPYV-GAFLGAD-------------------GKKK------------------------------------ 232 (766)
T ss_pred cC-------Cccc-eEEEEec-------------------Cccc------------------------------------
Confidence 10 0000 0000000 0000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----c----------------------------
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----K---------------------------- 1449 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----r---------------------------- 1449 (2693)
.....+...+..++....+.++.+|||++.+.........|.. .
T Consensus 233 ----~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (766)
T COG1204 233 ----TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEE 308 (766)
T ss_pred ----cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHH
Confidence 0001123344445555567788999999988766555555541 0
Q ss_pred -----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC----------CCCccchh
Q 000047 1450 -----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----------DWNPQVDL 1514 (2693)
Q Consensus 1450 -----GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp----------pWNP~~di 1514 (2693)
-..+..-|.+++.++|+-+-+.|+++.-+ +|++|..+..|+||+ |++|||-|. +-++..++
T Consensus 309 l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~ 384 (766)
T COG1204 309 LAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVL 384 (766)
T ss_pred HHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHh
Confidence 01233456789999999999999988765 899999999999998 566766443 33567789
Q ss_pred hhhhhhcccCCc
Q 000047 1515 QAQARAHRIGQK 1526 (2693)
Q Consensus 1515 QAIGRAHRIGQk 1526 (2693)
|..|||+|.|=.
T Consensus 385 QM~GRAGRPg~d 396 (766)
T COG1204 385 QMAGRAGRPGYD 396 (766)
T ss_pred hccCcCCCCCcC
Confidence 999999999854
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=179.82 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-hhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L-~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
-+|+-.|.+++... -...+|||.|..+.+..|.+.| ...++++..+||..++.+|++.+++|+.+... +|++|+
T Consensus 372 ~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw---vLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW---VLICTD 446 (593)
T ss_pred hhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee---EEEehh
Confidence 35888888888765 4578999999999999999999 88999999999999999999999999887643 699999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+.++||||..++.||+||.+-.-..|++|+||++|.|+.-. .|-|++.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 99999999999999999999999999999999999997643 3334444
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-13 Score=175.51 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=113.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..+++..|.+.|.++...+.++||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+... +||+|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~---VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD---VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce---EEEEcC
Confidence 45688888888888888999999999999999999999999999999999999999999999999876543 789999
Q ss_pred ccccccCccccCEEEEec-----CCCCccchhhhhhhhcccCCcccEEEEEEEeCCC--HHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRAS 1547 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyD-----ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS--IEEkIler 1547 (2693)
.+++|++++.+++||++| .+-+...|+|++||++|... -.|+.|+...+ +.+.|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~---G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC---CEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 56688899999999999742 23444444433 44445443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=180.20 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=113.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+.+.++...|..|||||......++|..+|...|+++..|++.....+|+.+.+.|+.+. ++|+|+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEecc
Confidence 346999999999999999999999999999999999999999999999999999999999999997662 899999
Q ss_pred ccccccCccc--------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQA--------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQa--------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+|+|+|+.= -=+||.-..+-|-..+.|-.||++|-|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999752 23788899999999999999999999988776
Q ss_pred EEEEEEeCCCHHHHHHH
Q 000047 1530 LVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIle 1546 (2693)
..| -|+|..++.
T Consensus 581 ~f~-----lSleD~l~~ 592 (896)
T PRK13104 581 RFY-----LSLEDNLMR 592 (896)
T ss_pred EEE-----EEcCcHHHH
Confidence 666 345555543
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=184.92 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHH----HHHHHHH-hCCCCCceEEEe
Q 000047 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDR----GALIDKF-NQQDSPFFIFLL 1484 (2693)
Q Consensus 1413 elLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eER----qeiId~F-N~~dSd~fVfLL 1484 (2693)
.++..++.. ...+++|||||+.++.+..+.++|...+ +.+..+||.+...+| +++++.| +++..+...|||
T Consensus 548 ~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 344444443 3568899999999999999999998765 689999999999999 5678899 433322235799
Q ss_pred eecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1485 STrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
+|.+...|||+ ++|.||....| ...++||+||+||.|.+
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999999999 68999887666 56899999999999874
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.9e-12 Score=166.24 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..+++..|.+.|..+...+.++||||.....++.|.++|...|+++..+||.++..+|..+++.|+.+.. .+||+|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 4567888888888888899999999999999999999999999999999999999999999999977654 3789999
Q ss_pred ccccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1488 AGGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
.+++|++++.+++||++|. +-++..|+|++||++|- . .-.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999996 45888999999999994 2 3345555553
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=176.59 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+..+...+..|||||......+.|...|...|+++..|+|.....++..+...|+.+ .++|+|+.
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-----~VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-----AVTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-----eEEEEecc
Confidence 4589999999988888999999999999999999999999999999999998766666555555332 28999999
Q ss_pred cccccCcc---ccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQ---aAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|+|+. .+. +||+++.+-|...|.|+.||++|.|..-....|
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 99999994 677 999999999999999999999999987665444
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=180.61 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA-PRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa-PsL 1166 (2693)
.+|||||..++....+-+..+.+|=|.+.+|+|||+++|-+...+.. ..+|.+||. +||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 68999999999999998888999989999999999999988877754 448999997 77777433321110 112
Q ss_pred cEEEEcC-ChHH------------------HHHH---HHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccc
Q 000047 1167 HKIVYCG-PPEE------------------RRRL---FKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224 (2693)
Q Consensus 1167 kVIvy~G-s~~e------------------Rk~l---~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAH 1224 (2693)
+....+. ..-. .+.+ +.......+.-||++||+.+-............||+|||||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 2222222 1100 0111 1122234567899999999976555455666789999999999
Q ss_pred cccccc------chHHHH--HHhhcccccccccccC
Q 000047 1225 RIKNAS------CKLNAD--LKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1225 RIKN~s------SKlsra--Lk~Lka~~RLLLTGTP 1252 (2693)
|-.+.. +...+. -..+++..||-+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 975421 111111 1245678899999999
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=187.01 Aligned_cols=310 Identities=16% Similarity=0.157 Sum_probs=215.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+|+-|+++|...+. +..+++-..||.||.++....+ .--.+-.|||.|+ +|+.....-+.+. ++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA------~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPA------LLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccc------cccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 5789999999985554 8888999999999997653222 1223467999997 6765544445333 233
Q ss_pred EEEEcCCh--HHHHHHHHhhhhcC--CccEEEEcHHHHHhccCCC-c-ccccC---ccEEEEccccccccccc-------
Q 000047 1168 KIVYCGPP--EERRRLFKEKIVHQ--KFNVLLTTYEYLMNKHDRP-K-LSKIQ---WHYIIIDEGHRIKNASC------- 1231 (2693)
Q Consensus 1168 VIvy~Gs~--~eRk~l~ke~i~~~--kfdVVITTYE~Lik~~Dr~-~-L~kik---Wd~VIIDEAHRIKN~sS------- 1231 (2693)
.....+.. .++..+++ .+..+ .++|+..|++.+....... . ..... ..++||||||....+.-
T Consensus 331 a~~L~s~q~~~~~~~i~q-~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQ-KLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred eeeccccccHHHHHHHHH-HHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 33343433 33434433 34445 7899999999997633211 1 11122 58999999999865432
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
++.....++.....|+||||--..--.|+...|++-+|.+|.+. |+.+
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fnR~-------------------------- 457 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FNRP-------------------------- 457 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CCCC--------------------------
Confidence 23333344555667999999988888888888888877754331 2110
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
...+-|..... .....
T Consensus 458 ----------------------NL~yeV~~k~~---------------------~~~~~--------------------- 473 (941)
T KOG0351|consen 458 ----------------------NLKYEVSPKTD---------------------KDALL--------------------- 473 (941)
T ss_pred ----------------------CceEEEEeccC---------------------ccchH---------------------
Confidence 00111111100 00000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
.+.+.+. ....+.-.||||..+..++.+...|...|+....||.++...+|+.+.+.
T Consensus 474 ----------------------~~~~~~~-~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 474 ----------------------DILEESK-LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred ----------------------HHHHHhh-hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHH
Confidence 0111111 12346689999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
|..+... ++++|=|.|.|||-.++..||+|..|-+..-|.|..|||+|.|+-..+..|+
T Consensus 531 w~~~~~~---VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 531 WMSDKIR---VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HhcCCCe---EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 9877643 7999999999999999999999999999999999999999999998877664
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=149.69 Aligned_cols=167 Identities=26% Similarity=0.319 Sum_probs=118.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcC-CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ-LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~-lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
..++++||.+++.++.. . .++++..++|+|||..++.++...+.... .+++||++|. .+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 46899999999998875 3 78899999999999988887777665433 3569999995 6668899999998865
Q ss_pred ---CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-cc-chHHHHHHhh
Q 000047 1166 ---IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-AS-CKLNADLKHY 1240 (2693)
Q Consensus 1166 ---LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~s-SKlsraLk~L 1240 (2693)
.....+.+..... .+. ......++|+++||+.+........+...+|++|||||+|.+.+ .. ......+..+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 81 LGLKVVGLYGGDSKRE--QLR-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CCeEEEEEeCCcchHH--HHH-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 3344454443211 111 22334459999999999876655555667889999999999985 33 3333333444
Q ss_pred -cccccccccccCCCCCHHHHHH
Q 000047 1241 -QSSHRLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1241 -ka~~RLLLTGTPLQNnLeELwS 1262 (2693)
...+++++||||..+.-...+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CccceEEEEecCCchhHHHHHHH
Confidence 5788899999996443333333
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=169.27 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+.++...+..|||||......+.|..+|...|+++..|+|. ..+|+..|..|..+... ++|+|+.
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNm 487 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEeccc
Confidence 369999999999888899999999999999999999999999999999995 67999999999655444 8999999
Q ss_pred cccccCcccc--------------------------------------CEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1489 GGVGVNLQAA--------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1489 GGeGLNLQaA--------------------------------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+|+|+|+.-. =+||.-..+-|-..+.|..||++|-|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 9999997542 37888899999999999999999999987776
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 568 f~ 569 (830)
T PRK12904 568 FY 569 (830)
T ss_pred EE
Confidence 66
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=180.55 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCe---EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGik---ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
....+|||+.....++.+.+.|...++. ++-|+|.++.++|.++++.+ + .+-|||+|+++++||++.++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g---~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S---GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C---CeeEEEeccHHhhccccCcceEE
Confidence 4578999999999999999999887765 67799999999999887653 2 24589999999999999999999
Q ss_pred EEec---------------CCCCc---cchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1502 IIFD---------------TDWNP---QVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1502 IiyD---------------ppWNP---~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
|.++ ++..| ..+.||.||++|.+ +-.+|+|+++...
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9985 23333 57999999999984 5578899887544
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-12 Score=168.89 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=203.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPs 1165 (2693)
..--|-|+.+++-+..=...+. .-+||.++|-|||=+|+-.+-... ...+-+.|+||+.+|. |..+.|..-+-+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---MDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 3555679999988876544443 348999999999999874433222 2224489999999985 456666544433
Q ss_pred CcE----EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1166 IHK----IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1166 LkV----Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
+.+ +.-.-+..+.+.+ ...+..+..||||-|+..|.++. .-.+..+|||||=||+.- +.-..|+.++
T Consensus 670 fPV~I~~LSRF~s~kE~~~i-l~~la~G~vDIvIGTHrLL~kdv-----~FkdLGLlIIDEEqRFGV---k~KEkLK~Lr 740 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEI-LKGLAEGKVDIVIGTHRLLSKDV-----KFKDLGLLIIDEEQRFGV---KHKEKLKELR 740 (1139)
T ss_pred CCeeEEEecccCCHHHHHHH-HHHHhcCCccEEEechHhhCCCc-----EEecCCeEEEechhhcCc---cHHHHHHHHh
Confidence 322 2222333444444 35677899999999999997633 223457999999999843 3345566665
Q ss_pred c-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 S-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 a-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
+ -..|-||||||..+|.= +|. -++.|.
T Consensus 741 ~~VDvLTLSATPIPRTL~M--sm~------------------------------------------GiRdlS-------- 768 (1139)
T COG1197 741 ANVDVLTLSATPIPRTLNM--SLS------------------------------------------GIRDLS-------- 768 (1139)
T ss_pred ccCcEEEeeCCCCcchHHH--HHh------------------------------------------cchhhh--------
Confidence 4 46788999998766531 000 011111
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
+. .-|+....-|.....++..
T Consensus 769 ------vI-~TPP~~R~pV~T~V~~~d~---------------------------------------------------- 789 (1139)
T COG1197 769 ------VI-ATPPEDRLPVKTFVSEYDD---------------------------------------------------- 789 (1139)
T ss_pred ------hc-cCCCCCCcceEEEEecCCh----------------------------------------------------
Confidence 11 1122211111111110000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.++ + .-++.++ ..|..|..-.+..+.+..+...|+.. ..++...||.|+..+-++++..|.+++-+
T Consensus 790 ---~~i----r----eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 790 ---LLI----R----EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred ---HHH----H----HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 011 0 1122222 34667777778888888888888653 56788999999999999999999888777
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+|+||.....|||+++|||+|+-+.+ +--.+..|--||++|-. +.-+.|-|+..
T Consensus 858 ---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 858 ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred ---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 89999999999999999999999987 57888899999999954 44667766664
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=163.68 Aligned_cols=326 Identities=16% Similarity=0.218 Sum_probs=214.4
Q ss_pred ccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchH
Q 000047 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1074 ~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL 1152 (2693)
.|.++...+|. |.|++.+.-+++ +...+--.-||+|||...+.-+..-+.... ..-..||+.|+.-|
T Consensus 35 aI~kkg~~~pt--------piqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 35 AIHKKGFNTPT--------PIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred HHHHhhcCCCC--------chhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHH
Confidence 34455555554 447777765554 444444566999999887665544333322 22357999998766
Q ss_pred H-H---HHHHHHHHCCCCcEE-EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1153 P-G---WESEINFWAPRIHKI-VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1153 ~-Q---W~eEfeKwaPsLkVI-vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
. | ...++-++. .++.. .|.|+..+.. | .....+.||||+|+..+....-.-.|......|||+||+++|-
T Consensus 103 a~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeq--f--~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQ--F--ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHhcccc-chhhhhhcccchHHHH--H--HHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 3 3 333444444 34444 5555544332 1 2234689999999998865433334555667899999999985
Q ss_pred c--ccchHHHHHHhhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHH
Q 000047 1228 N--ASCKLNADLKHYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEEN 1304 (2693)
Q Consensus 1228 N--~sSKlsraLk~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ 1304 (2693)
. +..++.+.+.++.. ...+++|||-- +.| . +|.+ .
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp-~~l------v------------~fak--------a--------------- 215 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLP-RDL------V------------DFAK--------A--------------- 215 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCc-hhh------H------------HHHH--------c---------------
Confidence 4 44566666766643 45577777751 111 0 1110 0
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcc
Q 000047 1305 LLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPY 1384 (2693)
Q Consensus 1305 lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPy 1384 (2693)
-+..|.++| -||+..+- ...+++
T Consensus 216 --------Gl~~p~lVR---ldvetkis---------------------------------------e~lk~~------- 238 (529)
T KOG0337|consen 216 --------GLVPPVLVR---LDVETKIS---------------------------------------ELLKVR------- 238 (529)
T ss_pred --------cCCCCceEE---eehhhhcc---------------------------------------hhhhhh-------
Confidence 001111111 01110000 000000
Q ss_pred ccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHH
Q 000047 1385 LSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGD 1464 (2693)
Q Consensus 1385 L~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eE 1464 (2693)
-..++...|..+|..++.+... .++.+||+-....++++...|...|+....+.|+++++-
T Consensus 239 ------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~a 299 (529)
T KOG0337|consen 239 ------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEA 299 (529)
T ss_pred ------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHh
Confidence 0112334577888888876544 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1465 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1465 RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|..-+.+|+..... +|+.|+++.+|++++--|.||+||.+-.+..+.+|+||+.|.|.+ -..|-||+...
T Consensus 300 Rk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 300 RKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred hhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 99999999877665 899999999999999999999999999999999999999999854 45677777543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=163.60 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||||......+.|..+|...|+.+..|++.....+|..+...|+.+. ++|+|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 356999999999999999999999999999999999999999999999999999999999999997654 899999
Q ss_pred ccccccCccc-------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1488 AGGVGVNLQA-------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1488 AGGeGLNLQa-------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
.+|+|+|+.= -=+||.-..+-|-..+.|..||++|-|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999752 237899999999999999999999999876655
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 55
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=156.43 Aligned_cols=324 Identities=16% Similarity=0.144 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy 1171 (2693)
+.|..++..++. .+....+++.||.||++..-... |+. .+-.+||.|. .|+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 569999988875 56778999999999997653222 221 2346888886 4455555655544211111112
Q ss_pred cCChHHHHHHHHhh-hhcCCccEEEEcHHHHHhccCCCc----ccccCccEEEEccccccccccch---HHHHHHh----
Q 000047 1172 CGPPEERRRLFKEK-IVHQKFNVLLTTYEYLMNKHDRPK----LSKIQWHYIIIDEGHRIKNASCK---LNADLKH---- 1239 (2693)
Q Consensus 1172 ~Gs~~eRk~l~ke~-i~~~kfdVVITTYE~Lik~~Dr~~----L~kikWd~VIIDEAHRIKN~sSK---lsraLk~---- 1239 (2693)
.-+..+|.+++... .......++..|++.......... .......|+||||||..--+..- -|-.|-.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 22345666655332 223456778888876644222111 23345689999999998543321 1122222
Q ss_pred hcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1240 YQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1240 Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
+.....++||||--..--+|+|..|++-.|-. .|..|-.+.. | |.
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA---------iFkTP~FR~N--------------------L------FY 218 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVA---------IFKTPTFRDN--------------------L------FY 218 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHH---------hccCcchhhh--------------------h------hH
Confidence 23344588999998788889998888776632 1222111000 0 00
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
...|+.+. ..-+..|...|.|-.- . -++....
T Consensus 219 ----------------------------D~~~K~~I--------------~D~~~~LaDF~~~~LG-~--~~~~~~~--- 250 (641)
T KOG0352|consen 219 ----------------------------DNHMKSFI--------------TDCLTVLADFSSSNLG-K--HEKASQN--- 250 (641)
T ss_pred ----------------------------HHHHHHHh--------------hhHhHhHHHHHHHhcC-C--hhhhhcC---
Confidence 00011100 0001111111111000 0 0000000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
-+....--||||..+..++.|.-.|..+|+....+|.+.+..||.++.+.|.+++.+
T Consensus 251 ----------------------~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P- 307 (641)
T KOG0352|consen 251 ----------------------KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP- 307 (641)
T ss_pred ----------------------CCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC-
Confidence 001123469999999999999999999999999999999999999999999998888
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
+|++|-..|.|+|-++...||++|++-|..-|.|--||++|-|-..-|+.|+
T Consensus 308 --vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 308 --VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred --EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 8999999999999999999999999999999999999999999888888875
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=137.41 Aligned_cols=138 Identities=27% Similarity=0.343 Sum_probs=102.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC-CCcEEEEcCChHHHHHHHHhhhhc
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP-RIHKIVYCGPPEERRRLFKEKIVH 1188 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP-sLkVIvy~Gs~~eRk~l~ke~i~~ 1188 (2693)
+++|.+++|+|||.+++.++.++.... ..+.+||+||...+.+ |...+..|.. .+.+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 679999999999999999999887653 3456999999987755 5667777775 45666666654433322 2234
Q ss_pred CCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH---HHHHhhcccccccccccC
Q 000047 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN---ADLKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1189 ~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls---raLk~Lka~~RLLLTGTP 1252 (2693)
...+|+|+||+.+.+......+....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988775554445566899999999999988765443 233345678889999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-11 Score=145.52 Aligned_cols=310 Identities=19% Similarity=0.207 Sum_probs=201.6
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
+|+|-++|..+-+-++..+++....|+...+|.|||-+....|.+.+..+ +.+.|..|. .++..-...|..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 58999999999999999999999999999999999998888888776553 447888885 55566667777778777
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhh--ccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHY--QSS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~L--ka~ 1243 (2693)
.+.+.+|....- + ...+||+|-..+.+- +..||+|||||.+-+== .+-.+..+++.- ...
T Consensus 172 ~I~~Lyg~S~~~---f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 172 DIDLLYGDSDSY---F-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred CeeeEecCCchh---c-------cccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 777777654321 1 134555555444441 23589999999998732 222344444432 345
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh-hhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP-FVLRR 1322 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP-FLLRR 1322 (2693)
.+|.|||||-. .+.+... +.-++. .+-||
T Consensus 235 ~~IylTATp~k----------------------~l~r~~~----------------------------~g~~~~~klp~R 264 (441)
T COG4098 235 ATIYLTATPTK----------------------KLERKIL----------------------------KGNLRILKLPAR 264 (441)
T ss_pred ceEEEecCChH----------------------HHHHHhh----------------------------hCCeeEeecchh
Confidence 67999999921 1111000 000000 00011
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
.- .+.||-. ..+++. .+.+.+
T Consensus 265 fH---~~pLpvP--kf~w~~--~~~k~l---------------------------------------------------- 285 (441)
T COG4098 265 FH---GKPLPVP--KFVWIG--NWNKKL---------------------------------------------------- 285 (441)
T ss_pred hc---CCCCCCC--ceEEec--cHHHHh----------------------------------------------------
Confidence 00 0111110 111110 000000
Q ss_pred ChhhhcccHHH-HHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCC-eEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1403 PPIVRLCGKLE-MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQY-RYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1403 ~~Lvr~SgKLe-lLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGi-kylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.-.|+. .|.++|++...++..+|||.....+++.+...|.. ... ....++... ..|.+.+.+|+++...
T Consensus 286 -----~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~- 357 (441)
T COG4098 286 -----QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT- 357 (441)
T ss_pred -----hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE-
Confidence 001222 57788888888999999999999999999999842 222 224444443 4799999999988765
Q ss_pred eEEEeeecccccccCccccCEEEEecCC--CCccchhhhhhhhcccCCcccEEEEEEEe
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTD--WNPQVDLQAQARAHRIGQKRDVLVLRFET 1536 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDpp--WNP~~diQAIGRAHRIGQkKeV~VyRLIT 1536 (2693)
+||+|..+.+|+.++..|+.|+=--. ++-...+|--||++|--..-.-.|+.|-.
T Consensus 358 --lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 358 --LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred --EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 89999999999999999999886555 88899999999999965443334444433
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=134.21 Aligned_cols=78 Identities=31% Similarity=0.546 Sum_probs=74.3
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1444 d~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
.+|+..|+++..++|.++.++|+++++.|+.+... +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 47889999999999999999999999999988764 899999999999999999999999999999999999999998
Q ss_pred C
Q 000047 1524 G 1524 (2693)
Q Consensus 1524 G 1524 (2693)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=175.87 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=88.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
....||||+.....++.+.+.|...+ +.++-|+|.++.++|.++++.+ . .+-|||+|+++.+||++.++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~--~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S--GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C--CceEEEeccHHHhccccCCeeEE
Confidence 35689999999999999999998764 4588899999999999885544 2 13479999999999999999999
Q ss_pred EEecCC----C--------------CccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1502 IIFDTD----W--------------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1502 IiyDpp----W--------------NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
|.++.. | +-..+.||.||++|.| +-.+|+|+++...
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 998843 2 3357899999999998 5578999987544
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=161.45 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+..+...+..|||||.+....+.|..+|...|+.+..|++ ...+|+..|..|..... .++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 35999999999998889999999999999999999999999999999997 67799999999965444 38999999
Q ss_pred cccccCccccC--------EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1489 GGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1489 GGeGLNLQaAD--------tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|..-....| -|.|+.++.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-----vSleD~Lmr 716 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-----VSLEDELMR 716 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-----echhHHHHH
Confidence 99999998433 448999999999999999999999987665444 344555543
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=145.68 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=213.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
.++||.|+.+++..+. +...+|...+|-||++..-.. .--..|-.|||||. +++......++...-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlp------al~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLP------ALCADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhh------HHhcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3689999999988776 778899999999999754322 22235667999997 777777777776654433
Q ss_pred EEEEcCChHHHHHHHHh-hhhcCCccEEEEcHHHHHhccC-----CCcccccCccEEEEcccccccccc------chHHH
Q 000047 1168 KIVYCGPPEERRRLFKE-KIVHQKFNVLLTTYEYLMNKHD-----RPKLSKIQWHYIIIDEGHRIKNAS------CKLNA 1235 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke-~i~~~kfdVVITTYE~Lik~~D-----r~~L~kikWd~VIIDEAHRIKN~s------SKlsr 1235 (2693)
.+--..+.++.++.-.. ......|.++..|++.+.+... ...|..-.|.+|-|||.|...-+. .+..-
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 33333334433332211 1234679999999998854210 113445568999999999975432 23333
Q ss_pred HH-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DL-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aL-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.| +.|+....|+||||...+-+.|...+|.+- ..-.|..-|++|-
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~n---------------------------- 288 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRPN---------------------------- 288 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCCC----------------------------
Confidence 33 467888889999999888888776655321 0112222222211
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
....+..-+-+ .++
T Consensus 289 -------------------l~yev~qkp~n---------------------------------------------~dd-- 302 (695)
T KOG0353|consen 289 -------------------LKYEVRQKPGN---------------------------------------------EDD-- 302 (695)
T ss_pred -------------------ceeEeeeCCCC---------------------------------------------hHH--
Confidence 00000000000 000
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
-.+-+.+++.. .-.|..-||||-...-.+.+...|...|+..-.+|..+.+++|.-+-..|-.
T Consensus 303 ----------------~~edi~k~i~~-~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 303 ----------------CIEDIAKLIKG-DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred ----------------HHHHHHHHhcc-ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc
Confidence 01111222221 1236788999999999999999999999999999999999999999888876
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhh---------------------------------------
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ--------------------------------------- 1515 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQ--------------------------------------- 1515 (2693)
+... ++++|-|.|.|||-++...||+-.++.+...|.|
T Consensus 366 ~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffav 442 (695)
T KOG0353|consen 366 GEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAV 442 (695)
T ss_pred cceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeee
Confidence 6544 6889999999999999999999999999999999
Q ss_pred ----hhhhhcccCCcccEEEEEE
Q 000047 1516 ----AQARAHRIGQKRDVLVLRF 1534 (2693)
Q Consensus 1516 ----AIGRAHRIGQkKeV~VyRL 1534 (2693)
--||++|-|++-+|..|+=
T Consensus 443 fsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 443 FSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred ecchhccccccCCCcccEEEEec
Confidence 5689999999999776653
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-12 Score=155.40 Aligned_cols=316 Identities=19% Similarity=0.169 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHH-HHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV-IALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP-- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQA-IALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP-- 1164 (2693)
..|.|-|..+|..-+ -.+.|-++...|++|||+++ +|-|..++. ..+.+|.+||.-.|.| -.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 479999999887543 24777888999999999876 233444443 3456999999877755 5677865553
Q ss_pred CCcEEEEcCChHHHHHHH-HhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc--ccchHH---HHHH
Q 000047 1165 RIHKIVYCGPPEERRRLF-KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLN---ADLK 1238 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~-ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN--~sSKls---raLk 1238 (2693)
.+++-+-.|....+.+-- -......+.||+|-||+-+--.+.. --..-+...|||||.|.+.. ....+- ..|+
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-CCcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 355556666544332110 0012245789999999866321111 11223568899999999976 233332 3333
Q ss_pred hh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+ .....|.||||- .|+.||..-|..-. +
T Consensus 368 ~l~~~AQ~i~LSATV--gNp~elA~~l~a~l-----------------V------------------------------- 397 (830)
T COG1202 368 YLFPGAQFIYLSATV--GNPEELAKKLGAKL-----------------V------------------------------- 397 (830)
T ss_pred HhCCCCeEEEEEeec--CChHHHHHHhCCee-----------------E-------------------------------
Confidence 33 346678899996 55566554332100 0
Q ss_pred hhhhhhHhHHhhcCcc-ceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1318 FVLRRLKHKVENELPE-KIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~-KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.....|- ...+++.|.-...
T Consensus 398 ---------~y~~RPVplErHlvf~~~e~e-------------------------------------------------- 418 (830)
T COG1202 398 ---------LYDERPVPLERHLVFARNESE-------------------------------------------------- 418 (830)
T ss_pred ---------eecCCCCChhHeeeeecCchH--------------------------------------------------
Confidence 0111121 1223333331111
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHh------hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHH
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKL------KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kL------katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId 1470 (2693)
|+.++.++.+.- +.-....|||+..+.-+..|.++|..+|++..-+|++++..+|..+-.
T Consensus 419 --------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 419 --------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred --------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHH
Confidence 222222222211 111357899999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEE----ecCCC-CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.|.+..-. .+++|.|++-|+|+++ +.||| +...| +|..+.|..|||+|.+=...-.||-++-.+
T Consensus 485 ~F~~q~l~---~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 485 AFAAQELA---AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHhcCCcc---eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99877766 7899999999999985 44544 34445 999999999999999877666677666543
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=157.40 Aligned_cols=324 Identities=18% Similarity=0.132 Sum_probs=186.7
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCchH-HHHHHHHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
|--.|-+++. ..|+.+.|.|++.+||+|||..|+..|..++..+. +.-.++.|+|...| ..-.+.+.+-
T Consensus 111 fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 111 FNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 3333444443 34778999999999999999999988888877522 22247999996444 3333333222
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc----cCCCcccccCccEEEEccccccccccch----
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK----HDRPKLSKIQWHYIIIDEGHRIKNASCK---- 1232 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~----~Dr~~L~kikWd~VIIDEAHRIKN~sSK---- 1232 (2693)
+. ++.|.-+.|+...-+ .+ ....+|+|||++.+--. .....| .-...+|||||.|-+......
T Consensus 188 l~~~gi~v~ELTGD~ql~~----te--i~~tqiiVTTPEKwDvvTRk~~~d~~l-~~~V~LviIDEVHlLhd~RGpvlEt 260 (1230)
T KOG0952|consen 188 LAPLGISVRELTGDTQLTK----TE--IADTQIIVTTPEKWDVVTRKSVGDSAL-FSLVRLVIIDEVHLLHDDRGPVLET 260 (1230)
T ss_pred cccccceEEEecCcchhhH----HH--HHhcCEEEecccceeeeeeeeccchhh-hhheeeEEeeeehhhcCcccchHHH
Confidence 22 588899999875432 22 24689999999977211 110111 123579999999999875433
Q ss_pred -HHHHHHhh----cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHH
Q 000047 1233 -LNADLKHY----QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLI 1307 (2693)
Q Consensus 1233 -lsraLk~L----ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lli 1307 (2693)
..+.++.. ..-+.++||||- -|..|+. .||.-..+.....|+..|.
T Consensus 261 iVaRtlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yR------------------------ 311 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYR------------------------ 311 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccc------------------------
Confidence 33333322 234568999995 2344433 3333322222223332221
Q ss_pred HHHHHHHhhhhhhhhhHhHHhhcCccceeEeeecccc--HHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEAS--AYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1308 I~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLS--a~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
|.-|+ ..++-+... ..|...
T Consensus 312 ---------PvpL~--------------~~~iG~k~~~~~~~~~~----------------------------------- 333 (1230)
T KOG0952|consen 312 ---------PVPLT--------------QGFIGIKGKKNRQQKKN----------------------------------- 333 (1230)
T ss_pred ---------cccee--------------eeEEeeecccchhhhhh-----------------------------------
Confidence 11111 011100000 000000
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----cCCe---------
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYR--------- 1452 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----rGik--------- 1452 (2693)
++ ..+++.+. ++...||.|+||++.+...-.....|.. .|+.
T Consensus 334 -------~d--------------~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~ 388 (1230)
T KOG0952|consen 334 -------ID--------------EVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRN 388 (1230)
T ss_pred -------HH--------------HHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhh
Confidence 00 01222222 2345688899998877654444444432 2221
Q ss_pred ----------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccc----------
Q 000047 1453 ----------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV---------- 1512 (2693)
Q Consensus 1453 ----------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~---------- 1512 (2693)
+..-|.++...+|+-+-+.|..+.-+ +|++|..+..|+||++--.||-=..-|+...
T Consensus 389 k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilD 465 (1230)
T KOG0952|consen 389 KQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILD 465 (1230)
T ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHH
Confidence 22345677888999999999877655 7999999999999997655554445566544
Q ss_pred hhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1513 DLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1513 diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
.+|-+|||+|..=.+.-..+-+.+.+.
T Consensus 466 VlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 466 VLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHHhccCCCCCCCCceEEEEecccH
Confidence 589999999987666544444444443
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-10 Score=150.61 Aligned_cols=128 Identities=12% Similarity=0.165 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+-+.++.+.|..|||-|.....-+.|..+|...|+.+..|+-... +.-.++|.. ++... .+.|+|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeecc
Confidence 47999999999999999999999999999999999999999999999987533 223345554 34332 48999999
Q ss_pred cccccCcccc--------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1489 GGVGVNLQAA--------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1489 GGeGLNLQaA--------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+|+|.|+.-. =+||.-..+-|...+.|..||++|-|..-....| -|+|..++.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-----lSlEDdL~~ 686 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-----LSFEDRLMR 686 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-----EEcchHHHH
Confidence 9999997543 3789999999999999999999999988766555 244555543
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=122.01 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh
Q 000047 1441 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 1520 (2693)
Q Consensus 1441 ILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA 1520 (2693)
.|.++|...++.+..++|.++.++|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 5678888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred cccC
Q 000047 1521 HRIG 1524 (2693)
Q Consensus 1521 HRIG 1524 (2693)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=134.14 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCC--CcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPR--IHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPs--LkVI 1169 (2693)
|+|.+++..+. ++.+.|+..++|+|||..++..+...+... ....+||++|.. ++.+-..++.+++.. +++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999998776 367799999999999999987776655544 334699999974 567788889888854 6777
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhh---cccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHY---QSSH 1244 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~L---ka~~ 1244 (2693)
.++|........ ......+.+|+|+|++.|........+...+.++|||||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777755422111 1112457999999999998755432223345899999999999763 22233333433 2356
Q ss_pred cccccccCCCCCHH
Q 000047 1245 RLLLTGTPLQNNLE 1258 (2693)
Q Consensus 1245 RLLLTGTPLQNnLe 1258 (2693)
.++|||||- .+++
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 799999996 4444
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=137.11 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=109.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc--CCCCCEEEEecC-chHHHHHHHHHHHCC--
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK--NDRGPFLVVVPS-SVLPGWESEINFWAP-- 1164 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k--~~~gP~LIVVPt-SLL~QW~eEfeKwaP-- 1164 (2693)
.|++||.+++..+.. +.+.|++.++|.|||+.++..+...+... .....+|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999987775 78899999999999998665554444433 233458999997 556889998888864
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-h-HHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-K-LNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-K-lsraLk~Lk- 1241 (2693)
++.+..+.|........ .....+.+|+|+|.+.+........+....++++||||+|.+.+... . +...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 56677777765543322 11225789999999887664444444455689999999999875431 1 222233443
Q ss_pred ccccccccccCC
Q 000047 1242 SSHRLLLTGTPL 1253 (2693)
Q Consensus 1242 a~~RLLLTGTPL 1253 (2693)
....+++|||+-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 355789999995
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=154.37 Aligned_cols=353 Identities=17% Similarity=0.119 Sum_probs=206.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchH-HHHHHHHHHHCCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVL-PGWESEINFWAPRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL-~QW~eEfeKwaPsL 1166 (2693)
-..+++|..++++.......+..++|-++||.|||..++.+..+.+..+ .....++.|.|..++ .+-.+.+..|+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 4568999999999988777666789999999999999998888887763 344457888887665 55777788777544
Q ss_pred cEEEE--cCChHHHHHHHHhh-----------hhcCCccEEEE-cHHHHHhccC--C-CcccccCccEEEEccccccccc
Q 000047 1167 HKIVY--CGPPEERRRLFKEK-----------IVHQKFNVLLT-TYEYLMNKHD--R-PKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1167 kVIvy--~Gs~~eRk~l~ke~-----------i~~~kfdVVIT-TYE~Lik~~D--r-~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
.+... ++.....-...... ....-+.+.++ +.+.+..... . ..+..+-..++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 43333 44433221111100 00011222222 2222221000 0 0133345678999999998655
Q ss_pred -cchHHH-HHHhh--cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1230 -SCKLNA-DLKHY--QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1230 -sSKlsr-aLk~L--ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
...... .+..+ .....|++|||+- ..|.+.+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~---------------------- 389 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLK---------------------- 389 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHH----------------------
Confidence 222222 22222 2457799999981 11111111
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
..+.... .+. ...+ .| ..++.+.+
T Consensus 390 -------~~~~~~~------~~~--~~~~-----~~------------------------------------~~~~e~~~ 413 (733)
T COG1203 390 -------KALGKGR------EVV--ENAK-----FC------------------------------------PKEDEPGL 413 (733)
T ss_pred -------HHHhccc------cee--cccc-----cc------------------------------------cccccccc
Confidence 0000000 000 0000 00 00111111
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
.......+.. ... ..+...+..-...+.+|+|-++.+..+..+...|+..+.+++.||+.....+|
T Consensus 414 ~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR 479 (733)
T COG1203 414 KRKERVDVED-------------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDR 479 (733)
T ss_pred ccccchhhhh-------------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhH
Confidence 1100000000 000 12222333335568999999999999999999999888889999999999999
Q ss_pred HHHHHHHhCC-CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC--CcccEEEEEEEeCCCHHH
Q 000047 1466 GALIDKFNQQ-DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG--QKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1466 qeiId~FN~~-dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG--QkKeV~VyRLIT~gSIEE 1542 (2693)
.+.++.+..- ..+-..++|+|.+...|||+. .|.+|- | .--....+||.||++|-| ....+.||...-......
T Consensus 480 ~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-e-~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~ 556 (733)
T COG1203 480 EEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-E-LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLK 556 (733)
T ss_pred HHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-c-CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchh
Confidence 9988865421 111124899999999999976 666553 2 223456899999999999 445588887777777777
Q ss_pred HHHHHHHHHHHHHhhh
Q 000047 1543 QVRASAEHKLGVANQS 1558 (2693)
Q Consensus 1543 kIleraekKl~Li~kV 1558 (2693)
+.++....+.......
T Consensus 557 ~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 557 YSYEKLEKKLKSLEEL 572 (733)
T ss_pred hhhhcchhhhcccccc
Confidence 7777776665544433
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=145.41 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=65.9
Q ss_pred HHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1414 MLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1414 lLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+.+.|.++ ...+.++|||+.....++.+.+.|.. .++. .+..+.. ..|.+++++|+.++.. +|++|..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 444444444 34567999999999999999999864 3444 3333333 5799999999876543 7889999
Q ss_pred cccccCccc--cCEEEEecCCC
Q 000047 1489 GGVGVNLQA--ADTVIIFDTDW 1508 (2693)
Q Consensus 1489 GGeGLNLQa--ADtVIiyDppW 1508 (2693)
..+|||+.. ...|||.-.|+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 999999987 56788888776
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-09 Score=135.55 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||.|.....-++|..+|...|+++..|+.... ++-.++|.+- +... .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEec
Confidence 346899999999889999999999999999999999999999999999987644 3335566553 3332 4899999
Q ss_pred ccccccCcccc---------------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1488 AGGVGVNLQAA---------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1488 AGGeGLNLQaA---------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
.+|+|.|+.-. =+||....+-|-..+.|..||++|-|..-....| -|+|..++.+-
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-----lSleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-----VSLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-----EEcchhHHHhc
Confidence 99999997633 3889999999999999999999999988776666 34566555443
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-09 Score=130.13 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
-++-|..-+.+..+.+.||||-+-..+|++-|.+||...|+++.++|..++.-+|.++|...+.+.-+ +|+....+-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 33444444444466789999999999999999999999999999999999999999999999988766 899999999
Q ss_pred cccCccccCEEEEecCC-----CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1491 VGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDpp-----WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
+||||+.+..|.|+|-+ -+-...+|-||||-|--..+. ..|-=...+++++.|-+..+
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gkv-IlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKV-ILYADKITDSMQKAIDETER 570 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeE-EEEchhhhHHHHHHHHHHHH
Confidence 99999999999999987 467889999999999654443 33433333566666655543
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-09 Score=137.20 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+..+.+.|..|||-+.....-+.|..+|...|+++-.|+-... ++-.++|.+ ++... .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cEEEecc
Confidence 346999999999999999999999999999999999999999999988877533 333445553 44433 4899999
Q ss_pred ccccccCccc-------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1488 AGGVGVNLQA-------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1488 AGGeGLNLQa-------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
.+|+|.|+.= -=+||.-..+-|-..+.|..||++|-|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 9999999742 237899999999999999999999999887666
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 55
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=131.50 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHH---HHCCCCcE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEIN---FWAPRIHK 1168 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfe---KwaPsLkV 1168 (2693)
+.|.+.+...+- +...+...-.|+|||..........++--...-.+||+|-+..+ .|...|+. ++.|++++
T Consensus 67 evqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 67 EVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred HhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 457787766553 55667778899999977643333333322223347999988665 56666655 56799999
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.+|.|.....+. +.....-.+||+.|++++........|...+..+.|+|||++|.
T Consensus 143 aVFfGG~~Ikkd---ee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKD---EELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceecccc---HHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 999887654321 12223478999999999976555556777778999999999874
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=132.57 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=88.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
-.|.||||....-+|-|+.+|+.+| |..+.|+|..+++||.+-++.|...+-. |||+|+++.+|||++..-++|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4699999999999999999998764 6788999999999999999999877665 999999999999999999999
Q ss_pred EecCCCCccchhhhhhhhcccC
Q 000047 1503 IFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1503 iyDppWNP~~diQAIGRAHRIG 1524 (2693)
+..+|-.-..|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999988853
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.5e-08 Score=124.87 Aligned_cols=366 Identities=17% Similarity=0.139 Sum_probs=201.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaPsL 1166 (2693)
...|-.||+++|..|.. +...++|.-|-.|||++|=..|+ +... . ..+.+.-.|-..|.| =.++|+..|.+.
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAia-laq~-h-~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIA-LAQK-H-MTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHH-HHHh-h-ccceEecchhhhhccchHHHHHHhcccc
Confidence 36788999999976654 88889999999999999854443 2222 2 234688888777755 567888777665
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-hHHHHHHhhccc--
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQSS-- 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~-- 1243 (2693)
. +..|+.. ......++|+|-+.|+..+.+..=...+..+||+||.|++-+... -.|..+--+-.+
T Consensus 368 g--LlTGDvq----------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 368 G--LLTGDVQ----------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred c--eeeccee----------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 5 5556432 235678999999999876654433333467899999999966332 233333322233
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
..|+||||- .+..+|..|+++--...-. ++-
T Consensus 436 ~~IlLSATV--------------------PN~~EFA~WIGRtK~K~Iy---------------------------ViS-- 466 (1248)
T KOG0947|consen 436 NFILLSATV--------------------PNTLEFADWIGRTKQKTIY---------------------------VIS-- 466 (1248)
T ss_pred eEEEEeccC--------------------CChHHHHHHhhhccCceEE---------------------------EEe--
Confidence 348999995 2345788898652111000 000
Q ss_pred HhHHhhcCccceeEeeeccccHH------HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh-hhhcc
Q 000047 1324 KHKVENELPEKIERLVRCEASAY------QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE-EVDTL 1396 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~------Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E-Eid~l 1396 (2693)
-...|-..|+.+++.-+-+ -..+++.+........ ...+..... -+.-+-...... ..+..
T Consensus 467 ----T~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~-------~~~~~~~rgs~~~ggk~~ 534 (1248)
T KOG0947|consen 467 ----TSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVE-------KSDARGGRGSQKRGGKTN 534 (1248)
T ss_pred ----cCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccc-------cccccccccccccCCcCC
Confidence 0123445667776652111 1112222221111110 000000000 000000000000 00000
Q ss_pred CCCCC--CChhhhcccHHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHhhcCC----------------------
Q 000047 1397 IPKHY--LPPIVRLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQY---------------------- 1451 (2693)
Q Consensus 1397 i~~~~--l~~Lvr~SgKLelLdeLL~kLkat-GhKVLIFSQft~tLDILed~L~~rGi---------------------- 1451 (2693)
....+ ....-..-.|-.....+|..+... --.+||||-.+.-+|.-.++|...++
T Consensus 535 ~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~ 614 (1248)
T KOG0947|consen 535 YHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKG 614 (1248)
T ss_pred CCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcCh
Confidence 00000 000000011111234444444332 35789999888888887777754332
Q ss_pred -----------------eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC--------
Q 000047 1452 -----------------RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT-------- 1506 (2693)
Q Consensus 1452 -----------------kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp-------- 1506 (2693)
.+...||+.=+--++-+--.|..+ +.-+|++|.....|+|++ |.+|||-..
T Consensus 615 ~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG---lVKVLFATETFAMGVNMP-ARtvVF~Sl~KhDG~ef 690 (1248)
T KOG0947|consen 615 EDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG---LVKVLFATETFAMGVNMP-ARTVVFSSLRKHDGNEF 690 (1248)
T ss_pred hhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC---ceEEEeehhhhhhhcCCC-ceeEEeeehhhccCcce
Confidence 123345554443334344467555 344899999999999997 566666443
Q ss_pred -CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1507 -DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1507 -pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
.-+|..|.|..|||+|-|-...-+|+-++..
T Consensus 691 R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 691 RELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eecCChhHHhhhccccccccCcCceEEEEecC
Confidence 4689999999999999998777666655443
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.5e-08 Score=126.99 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-HHHHHHhCCCCCceEEEeee
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-ALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq-eiId~FN~~dSd~fVfLLST 1486 (2693)
...|+.++.+-+.++.+.|..|||.|......+.|..+|...|+.+..|+.... +|+ .+|. +++... .+.|+|
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~~G--aVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQKG--AITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCCCC--eEEEec
Confidence 347999999999988899999999999999999999999999999999988533 444 3444 344333 489999
Q ss_pred cccccccCccccC--------EEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1487 RAGGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1487 rAGGeGLNLQaAD--------tVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
..+|+|.|+.-.. +||....+-|-..+.|..||++|-|..-..+.|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999987544 999999999999999999999999988766655
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=125.53 Aligned_cols=321 Identities=21% Similarity=0.310 Sum_probs=178.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP-- 1164 (2693)
|..+.-+|+- |+..+..+.--.|+ .+||+|||.-.+....|+...+ +.++||+|+.+| .|-.+.|.+++.
T Consensus 80 G~~~ws~QR~---WakR~~rg~SFaii-APTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRV---WAKRLVRGKSFAII-APTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHH---HHHHHHcCCceEEE-cCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4577788887 77666555444555 5699999976655555554332 458999998665 777888888873
Q ss_pred ---CCcEEEEcCCh-HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 ---RIHKIVYCGPP-EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~-~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
...++ ||+.- ...++-..+.+..++|||+|||-+++.+.. ..|.+.+||+|+||.++-+.-.. +
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~--e~L~~~kFdfifVDDVDA~Lkas-k-------- 220 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRF--EELSKLKFDFIFVDDVDAILKAS-K-------- 220 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH--HHhcccCCCEEEEccHHHHHhcc-c--------
Confidence 33344 88873 222234456788899999999999999854 46888999999999998763222 1
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
+..+.|.|.|=+ +..+..-|.++.+- ..+. . .....++.+.++-.-.
T Consensus 221 NvDriL~LlGf~-eE~i~~a~~~~~lr------------~~~~-----------------~---~~~~~~~~e~~~~~e~ 267 (1187)
T COG1110 221 NVDRLLRLLGFS-EEVIESAYELIKLR------------RKLY-----------------G---EKRAERVREELREVER 267 (1187)
T ss_pred cHHHHHHHcCCC-HHHHHHHHHHHHHH------------HHhh-----------------h---hhhHHHHHHHHHHHHH
Confidence 112223344433 00011111211110 0000 0 0001111111111100
Q ss_pred hhhHhHHhhcCccceeEeeeccccH----HHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa----~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
+|.+.. .+.-.++....+. ....+|+.+. +. . +-.....||.+.. -|.
T Consensus 268 ~~~~~r------~k~g~LvvsSATg~~rg~R~~LfReLl---gF-e------vG~~~~~LRNIvD-~y~----------- 319 (1187)
T COG1110 268 EREKKR------RKLGILVVSSATGKPRGSRLKLFRELL---GF-E------VGSGGEGLRNIVD-IYV----------- 319 (1187)
T ss_pred HHHHhc------cCCceEEEeeccCCCCCchHHHHHHHh---CC-c------cCccchhhhheee-eec-----------
Confidence 000000 0111111111110 1122333221 00 0 0001112222211 010
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcc---hHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM---TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQf---t~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+.-.+.+.++++++ |.=.|||.+. .+.++.|.++|+..|++...++. ...+.++.|.
T Consensus 320 -----------~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~ 380 (1187)
T COG1110 320 -----------ESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFE 380 (1187)
T ss_pred -----------cCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhc
Confidence 112345556666655 5568999998 88999999999999999988876 3367899998
Q ss_pred CCCCCceEEEee-ecccccccCccc-cCEEEEecCC
Q 000047 1474 QQDSPFFIFLLS-IRAGGVGVNLQA-ADTVIIFDTD 1507 (2693)
Q Consensus 1474 ~~dSd~fVfLLS-TrAGGeGLNLQa-ADtVIiyDpp 1507 (2693)
.++-++-|=+.| ..++=+||||+. +.++|||..|
T Consensus 381 ~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 381 EGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 887763221211 345568999975 8999999988
|
|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-09 Score=125.35 Aligned_cols=206 Identities=20% Similarity=0.255 Sum_probs=123.4
Q ss_pred eeEeeeccccHHHHHHHHHHHHHh-----hccCCC-------------CCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1335 IERLVRCEASAYQKLLMKRVEENL-----GSIGNS-------------KGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1335 iE~vV~ceLSa~Qk~LYk~Lee~l-----~si~~s-------------k~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.++.+...|+.+|+.+|+.+.... ...... ....+...+.+|+.+|+||+|.- +-.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llv------dH~ 77 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLV------DHY 77 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--------TT
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccc------ccc
Confidence 367788999999999999874321 111111 11334556778999999999842 222
Q ss_pred CCCCC-----CChhhhcccHHHHHHHHHHHh-----hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Q 000047 1397 IPKHY-----LPPIVRLCGKLEMLDRLLPKL-----KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1397 i~~~~-----l~~Lvr~SgKLelLdeLL~kL-----katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq 1466 (2693)
++... ...+...|+||.+|.++|..+ ...+.++||.++..+++|+||.+|..+++.|.|++|..-.++..
T Consensus 78 mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~ 157 (297)
T PF11496_consen 78 MPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKH 157 (297)
T ss_dssp --S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S--
T ss_pred CccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccc
Confidence 22222 234678899999999999999 77788999999999999999999999999999999976554433
Q ss_pred HHH------------HHH-hCCCCCceEEEeeecccccc----cCccccCEEEEecCCCCccchhhhhhhh-cccCCccc
Q 000047 1467 ALI------------DKF-NQQDSPFFIFLLSIRAGGVG----VNLQAADTVIIFDTDWNPQVDLQAQARA-HRIGQKRD 1528 (2693)
Q Consensus 1467 eiI------------d~F-N~~dSd~fVfLLSTrAGGeG----LNLQaADtVIiyDppWNP~~diQAIGRA-HRIGQkKe 1528 (2693)
..- ... ..+...++|+|++++-.... ++-..+|.||-||+.+++....-..-|. +|-+ +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~ 235 (297)
T PF11496_consen 158 KVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RL 235 (297)
T ss_dssp -S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S
T ss_pred cCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CC
Confidence 322 111 12334567888887755442 3334689999999999988754444444 3433 78
Q ss_pred EEEEEEEeCCCHHHHHHHHH
Q 000047 1529 VLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1529 V~VyRLIT~gSIEEkIlera 1548 (2693)
+-|+|||..+|+|-.++..-
T Consensus 236 ~PiirLv~~nSiEHi~L~~~ 255 (297)
T PF11496_consen 236 CPIIRLVPSNSIEHIELCFP 255 (297)
T ss_dssp --EEEEEETTSHHHHHHHHT
T ss_pred CcEEEEeeCCCHHHHHHHcc
Confidence 99999999999998776543
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=133.15 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--------CCCEEEEecC-chH
Q 000047 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--------RGPFLVVVPS-SVL 1152 (2693)
Q Consensus 1082 qP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--------~gP~LIVVPt-SLL 1152 (2693)
+|..+....|.+-|-......+ ....|.+||.++|.|||..|+.-|..-+..+.. ...+..|+|. +|+
T Consensus 301 q~aF~g~~sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 301 QPAFFGKQSLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred hhhcccchhhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 3444433455555655443322 245678999999999999987666554433221 1236788995 677
Q ss_pred HHHHHHHHHHCCCC--cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH---hc-cCCCcccccCccEEEEcccccc
Q 000047 1153 PGWESEINFWAPRI--HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM---NK-HDRPKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1153 ~QW~eEfeKwaPsL--kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li---k~-~Dr~~L~kikWd~VIIDEAHRI 1226 (2693)
..|...|.+|.-.+ .|.-..|+....... .....|+++|++..- +. .|+.. ..-++++||||.|-+
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~q------ieeTqVIV~TPEK~DiITRk~gdraY--~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQ------IEETQVIVTTPEKWDIITRKSGDRAY--EQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhh------hhcceeEEeccchhhhhhcccCchhH--HHHHHHHhhhhhhhc
Confidence 77999999997654 455555554322221 245689999998661 11 11111 113578999999999
Q ss_pred c-cccchHH----HHHHhh----cccccccccccCCCCCHHHHHHHhhhccCCCC
Q 000047 1227 K-NASCKLN----ADLKHY----QSSHRLLLTGTPLQNNLEELWALLNFLLPNIF 1272 (2693)
Q Consensus 1227 K-N~sSKls----raLk~L----ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF 1272 (2693)
- +.+..+- +.+++. ...+.++||||- -|..|.-+.|.--.+++|
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 3 3444442 222222 134558999996 356666665543335544
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=135.09 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=110.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
.++.|-++|++++.-+. .+.+.+++..||.|||+++-..+.+-+..+ .+ ++...|...+ .|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~--qr-viYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG--QR-VIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC--Cc-eEeccchhhhhhhHHHHHHHHhhh
Confidence 35799999999997665 488999999999999999977666554332 22 7899996555 5556677655542
Q ss_pred C--cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-HHHH-HHhhc
Q 000047 1166 I--HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-LNAD-LKHYQ 1241 (2693)
Q Consensus 1166 L--kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-lsra-Lk~Lk 1241 (2693)
+ .+-++.|+. ....+..++|+|-+.|++...+..........||+||.|+|....-. .|.. +..+.
T Consensus 189 v~~~vGL~TGDv----------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDV----------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecce----------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 2 233444432 22457788888889998876555444556688999999999775432 3333 33444
Q ss_pred cc-ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC
Q 000047 1242 SS-HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284 (2693)
Q Consensus 1242 a~-~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k 1284 (2693)
.. +.++||||- ++..+|..|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 43 668999995 445678888764
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=134.28 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~ 1187 (2693)
+.+|++.+-+|+|||++++-++..+++..... .++|||-. .|-.|-.++|..+........-..+....+ ..+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~-~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk----~~l~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNP-KVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELK----ELLE 347 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCC-eEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHH----HHHh
Confidence 45799999999999999987777777663333 36666665 555888999998875544333222223322 3333
Q ss_pred cCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchHHHHHH-hhcccccccccccCCCCCHHH
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka~~RLLLTGTPLQNnLeE 1259 (2693)
...-.|+|||.+.|....... .....+.-+||+|||||- ....+.+.++ .|....-+++||||+.-.-..
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhccceEEEeeCCcccccccc
Confidence 346689999999987644332 234566788999999995 2333444443 355577799999998654333
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-07 Score=126.18 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=59.5
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHH
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
+....+||.|++-...+......+.++||-.+||+|||+.+|+.+.......+....+++.+.+ +-+.|-.+|+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3445679999999999999999999999999999999998887766655433333446666666 446788999987
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-07 Score=124.31 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccccc
Q 000047 1412 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491 (2693)
Q Consensus 1412 LelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGe 1491 (2693)
.+.+.+.|..+...+.++|||+...++|+.+.+.|....+.. ...|... .|.+++++|++.+.. +|+.|....|
T Consensus 633 ~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwE 706 (820)
T PRK07246 633 AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhC
Confidence 345666665666678899999999999999999887655443 4555332 367799999875444 8899999999
Q ss_pred ccCcc--ccCEEEEecCCC-Cc
Q 000047 1492 GVNLQ--AADTVIIFDTDW-NP 1510 (2693)
Q Consensus 1492 GLNLQ--aADtVIiyDppW-NP 1510 (2693)
|||++ .+..||+.-.|+ +|
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCC
Confidence 99996 466778887664 45
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-06 Score=119.51 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=69.7
Q ss_pred HHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCC--eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1413 EMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1413 elLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGi--kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
+.+.+.|.++. ..+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+.. +|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 45555555544 4667999999999999999988864322 133343333335689999999875443 78889999
Q ss_pred ccccCccc--cCEEEEecCCC-Ccc
Q 000047 1490 GVGVNLQA--ADTVIIFDTDW-NPQ 1511 (2693)
Q Consensus 1490 GeGLNLQa--ADtVIiyDppW-NP~ 1511 (2693)
.||||++. +..|||.-.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999986 58999999888 554
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.7e-08 Score=129.95 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=53.8
Q ss_pred CccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc----ccccccccccCCCC--CHHHHHHH
Q 000047 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ----SSHRLLLTGTPLQN--NLEELWAL 1263 (2693)
Q Consensus 1190 kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk----a~~RLLLTGTPLQN--nLeELwSL 1263 (2693)
.-.|++.|...|..++-...+....+..|||||||++.... ...-.++.|+ ..+.+++|+.|-.. .+..+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 45789999999988776667777788999999999996433 3344445553 45678999999763 33444444
Q ss_pred hhhc
Q 000047 1264 LNFL 1267 (2693)
Q Consensus 1264 LnFL 1267 (2693)
+.-|
T Consensus 86 mk~L 89 (814)
T TIGR00596 86 MRNL 89 (814)
T ss_pred HHHh
Confidence 4444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-05 Score=105.84 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||-|.....-++|..+|..+|+++-.|+.... ++-.++|.+- +... .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 346999999999999999999999999999999999999999999988876543 2233455443 3333 4899999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+|+|.|+. .-=+||.-..+-+...+.|..||++|-|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999976 245889999999999999999999999987665555
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=122.28 Aligned_cols=371 Identities=19% Similarity=0.216 Sum_probs=202.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|-+-|..++..+..........+|...||+|||-..+-+|...+..+ +-+||+||. ++..|-...|+..|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 3677789999998887542234568999999999999999999888765 347999996 777887788877665 56
Q ss_pred EEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc--ccccchHH--HHH---H
Q 000047 1168 KIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI--KNASCKLN--ADL---K 1238 (2693)
Q Consensus 1168 VIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI--KN~sSKls--raL---k 1238 (2693)
+.+++.. ..+|...|. .+..+...|||-|...+.- .--+-.+|||||=|-- |-.+..+| +.+ +
T Consensus 273 v~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 273 VAVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred hhhhcccCChHHHHHHHH-HHhcCCceEEEEechhhcC-------chhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 6666654 344444443 3556889999999987743 2234689999999984 33322222 111 1
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
++..-..+|-|||| +++-++...+ . .+. .-.+..+++
T Consensus 345 a~~~~~pvvLgSATP---SLES~~~~~~---g-~y~-~~~L~~R~~---------------------------------- 382 (730)
T COG1198 345 AKKENAPVVLGSATP---SLESYANAES---G-KYK-LLRLTNRAG---------------------------------- 382 (730)
T ss_pred HHHhCCCEEEecCCC---CHHHHHhhhc---C-ceE-EEEcccccc----------------------------------
Confidence 22344567889999 2333332210 0 000 000000000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccH----HHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCccccchh
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa----~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
...+|.....-+.-+... +-..+++.+.+.+..... .+.+..... + +.+.|.|.+-...
T Consensus 383 ----------~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~-l-~C~~Cg~v~~Cp~- 449 (730)
T COG1198 383 ----------RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPL-L-LCRDCGYIAECPN- 449 (730)
T ss_pred ----------ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccce-e-ecccCCCcccCCC-
Confidence 011221111111100000 113344444443322111 111111111 1 2223333211110
Q ss_pred hhhhhccCCCCCC--ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHH-
Q 000047 1390 AEEVDTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGD- 1464 (2693)
Q Consensus 1390 ~EEid~li~~~~l--~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eE- 1464 (2693)
++..+..+.. .-....|+.-+-+-...+++ |...|+++-. -.+.+++.|.. -+.++.|+|+.++...
T Consensus 450 ---Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~C---gs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~ 521 (730)
T COG1198 450 ---CDSPLTLHKATGQLRCHYCGYQEPIPQSCPEC---GSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKG 521 (730)
T ss_pred ---CCcceEEecCCCeeEeCCCCCCCCCCCCCCCC---CCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchh
Confidence 0000000000 00011122111111111111 3334544321 22344444432 4789999999987543
Q ss_pred -HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC---Cc---------cchhhhhhhhcccCCcccEEE
Q 000047 1465 -RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW---NP---------QVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1465 -RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW---NP---------~~diQAIGRAHRIGQkKeV~V 1531 (2693)
-+.+++.|.+++.+ |||-|.....|+|+++...|.++|.|- +| +.+.|..||++|-+-.-.|.|
T Consensus 522 ~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 522 ALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred hHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 46789999999888 899999999999999999998888762 22 456899999999876666766
Q ss_pred EEEEeC
Q 000047 1532 LRFETV 1537 (2693)
Q Consensus 1532 yRLIT~ 1537 (2693)
-.+...
T Consensus 599 QT~~P~ 604 (730)
T COG1198 599 QTYNPD 604 (730)
T ss_pred EeCCCC
Confidence 554444
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-05 Score=107.02 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC-----CCCcE
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA-----PRIHK 1168 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa-----PsLkV 1168 (2693)
|.+-+.++...+.++...|+-..||+|||+.++..+..++... ...++||++|+..| .|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7777888888888888888889999999999887765444322 24679999998554 77777776544 24455
Q ss_pred EEEcC
Q 000047 1169 IVYCG 1173 (2693)
Q Consensus 1169 Ivy~G 1173 (2693)
++..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-06 Score=110.27 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=77.9
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcCCe-EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc--cC
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--AD 1499 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rGik-ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa--AD 1499 (2693)
...+.++|||+..-.+|..+.++|...... .+...|... +.+++++|...... .|++.+....||||+.. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 344569999999999999999999876653 444555443 55899999876653 58999999999999986 68
Q ss_pred EEEEecCCCC-ccc-----------------------------hhhhhhhhcccCCcccEEE
Q 000047 1500 TVIIFDTDWN-PQV-----------------------------DLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1500 tVIiyDppWN-P~~-----------------------------diQAIGRAHRIGQkKeV~V 1531 (2693)
.||+.-.||= |.. ..|++||+.|--+.+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 9999998874 322 2588999988544444433
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.1e-06 Score=108.93 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCC-CHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT-SGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGST-S~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..|+.++.+-+..+.+.|..|||-|.....-+.|..+|...|+++..|+... ..++-.++|.+ ++... .+-|+|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEecc
Confidence 3588888888888889999999999999999999999999999999999864 33444556665 34333 4899999
Q ss_pred ccccccCc
Q 000047 1488 AGGVGVNL 1495 (2693)
Q Consensus 1488 AGGeGLNL 1495 (2693)
.+|+|.|+
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99999774
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=114.32 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
..-+|||-.-...++...+.|.. ..+.++-|+|.++.++..++ |+......+-+++||.++.++|.+..+.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 56799998888888877777776 45788889999999888774 543333334489999999999999999999
Q ss_pred E--------EecCCCCc----------cchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1502 I--------IFDTDWNP----------QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1502 I--------iyDppWNP----------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
| .||+--.- +...||-|||+|.+ +-.+|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHHHH
Confidence 7 34433222 23357777777765 55899999976544
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-05 Score=105.29 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhC----CCCCceEEEeee
Q 000047 1412 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ----QDSPFFIFLLSI 1486 (2693)
Q Consensus 1412 LelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~----~dSd~fVfLLST 1486 (2693)
.+.+.+.|.++...+.++|||+..-..|+.+.+.|... ++. +.+.|. ..|.++++.|.+ ++. .+|++|
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 44555656555556667899999999999999888643 333 444563 357889987764 333 378888
Q ss_pred cccccccCccc--cCEEEEecCCC-Cc
Q 000047 1487 RAGGVGVNLQA--ADTVIIFDTDW-NP 1510 (2693)
Q Consensus 1487 rAGGeGLNLQa--ADtVIiyDppW-NP 1510 (2693)
....+|||+.. +..|||.-.|+ +|
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~~p 619 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFAVP 619 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCCCC
Confidence 99999999975 89999999887 34
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-05 Score=102.95 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC-CCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH-TSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGS-TS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..|+.++.+-+.++.+.|..|||-|.....-+.|...|...|+.+..|+.. ...++-.++|.+ ++... .+-|+|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEecc
Confidence 579999999898999999999999999999999999999999999999986 333444556665 34333 4889999
Q ss_pred ccccccCc
Q 000047 1488 AGGVGVNL 1495 (2693)
Q Consensus 1488 AGGeGLNL 1495 (2693)
.+|+|-|+
T Consensus 498 MAGRGTDI 505 (939)
T PRK12902 498 MAGRGTDI 505 (939)
T ss_pred CCCCCcCE
Confidence 99999764
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=110.30 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHhCCCCCceEEEeeecccccccCccccCEE--------EEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1470 d~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV--------IiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
.+|.++... |-||| .|++-||.||.-..| |-+.+||+...-+|..||+||-.|.+.-.+..||++---|
T Consensus 851 qrFM~GeK~--vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMDGEKL--VAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhccccce--eeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 467666553 44454 899999999975444 5689999999999999999999999887777788877777
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 000047 1542 EQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1542 EkIleraekKl~Li~kVIqa 1561 (2693)
.+......+.++-......+
T Consensus 928 rRFAS~VAKRLESLGALThG 947 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHG 947 (1300)
T ss_pred hHHHHHHHHHHHhhcccccc
Confidence 77777777777666655543
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=112.31 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=99.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPsLk 1167 (2693)
.+|-|||..+|..+ .++...++..-|-.|||++|=-.|+.-+.. +.+++.-.|-..|. |=.+||..-|.++
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 58999999988644 457788888889999999986555544332 23467777865554 4567776555433
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchH-H-HHHHhh-cc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKL-N-ADLKHY-QS 1242 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKl-s-raLk~L-ka 1242 (2693)
-+..|+. ......-.+|+|-+.|+..+.+. .+..+.| ||+||.|+|+...... | ..+-.+ ..
T Consensus 200 -GLMTGDV----------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 200 -GLMTGDV----------TINPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred -ceeecce----------eeCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 3333431 12356778999999998765543 3455555 9999999998754321 1 111122 23
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k 1284 (2693)
-+-+.||||- .+...|.+|++.
T Consensus 267 vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 267 VRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred ceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 3447788884 345678888753
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=108.20 Aligned_cols=126 Identities=15% Similarity=0.256 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEEEcchHHHHHHHHHHhh----c---CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1411 KLEMLDRLLPKLKAT--DHRVLFFSTMTRLLDVMEDYLTF----K---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1411 KLelLdeLL~kLkat--GhKVLIFSQft~tLDILed~L~~----r---GikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.+.++..++..+... ...||||-.-...+..+.+.|.. . .+-.+.+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 456666666665443 46899999888887777777752 2 2567788999998777655 6666666777
Q ss_pred EEeeecccccccCccccCEEE--------EecCCCC----------ccchhhhhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1482 FLLSIRAGGVGVNLQAADTVI--------IFDTDWN----------PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVI--------iyDppWN----------P~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
+|++|..+...|.+.++-+|| .||+.-| -+.-.||.|||+|. .+-.+|+|++..-.+.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhh
Confidence 999999999999999988776 4554432 34457999998886 4558899888765443
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=105.26 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=105.1
Q ss_pred CCCcchHHHHHHHHHHHHHhhc------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNN------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
..+.|-.-|+++|-+....+.. +.+.+|.|.+|.||-.|..++|.+.+..++ .+++.|-+...|...-.+.+.
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChhhhhHHHHHHH
Confidence 4578999999999999876663 556699999999999999999988776543 345555566677776666665
Q ss_pred HHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-----CCcccc-cCc------cEEEEccccccc
Q 000047 1161 FWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-----RPKLSK-IQW------HYIIIDEGHRIK 1227 (2693)
Q Consensus 1161 KwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-----r~~L~k-ikW------d~VIIDEAHRIK 1227 (2693)
...- .+.+..+.. +.......-+..|+++||..|+.... ...|.. ++| .+||+||||++|
T Consensus 113 DIG~~~i~v~~l~~-------~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 113 DIGADNIPVHPLNK-------FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HhCCCcccceechh-------hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 4432 222222111 00111122366799999999987531 222222 122 478899999999
Q ss_pred cccc------hHHHHHHh----hcccccccccccCCC
Q 000047 1228 NASC------KLNADLKH----YQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1228 N~sS------KlsraLk~----Lka~~RLLLTGTPLQ 1254 (2693)
|..+ +...++.. +...+.+..|||...
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 9755 45555443 445577889999863
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00019 Score=95.45 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=104.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHH-HH-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEIN-FW-APR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfe-Kw-aPs 1165 (2693)
...-.+|.+-+ .....+...+|...+-.|||+..--++...++. .+.+.++.|+|+ .++.|-..++. +| ++.
T Consensus 510 F~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 44556888755 344567788999999999999887666666544 456678999997 55566555553 33 222
Q ss_pred Cc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC---cccccCccEEEEccccccccc-cchHHHHHHhh
Q 000047 1166 IH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP---KLSKIQWHYIIIDEGHRIKNA-SCKLNADLKHY 1240 (2693)
Q Consensus 1166 Lk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~---~L~kikWd~VIIDEAHRIKN~-sSKlsraLk~L 1240 (2693)
+. .+...|.-.. ...+..-...|+||-++.+....-.. .-.--+..|||+||.|.+.+. ....+..+-.+
T Consensus 585 ~~rg~sl~g~ltq-----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQ-----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cccchhhHhhhhH-----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 22 2222232111 11122347899999999886543221 111124689999999999885 45666666666
Q ss_pred cccccccccccCCCCCHHHHHHHhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
-....|+|+||- +|+..++-.++
T Consensus 660 i~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEeccc--CCHHHHHHHHH
Confidence 556678999995 66666666565
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-05 Score=98.41 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=76.4
Q ss_pred CeEEEEEcchHHHHHHHHHHhhc----CC----eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcccc
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFK----QY----RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~r----Gi----kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA 1498 (2693)
.-+|||=.-.+.++.+.+.|... +- -++-++|+++.++..++ |.....+++-+++||..+..-|.+..+
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecce
Confidence 46888887777766666666432 21 24678999998876644 655455677899999999999999998
Q ss_pred CEEEEec----CCCCc-----------cchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1499 DTVIIFD----TDWNP-----------QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1499 DtVIiyD----ppWNP-----------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
-+||=-. ..||| ..-.||.=|++|.|.+.+..+|||+++.-.+
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 8886211 12344 1223555555555556677999999987663
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=109.90 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=106.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHH---------HHHHCCC--CcEEEEcCCh--
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESE---------INFWAPR--IHKIVYCGPP-- 1175 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eE---------feKwaPs--LkVIvy~Gs~-- 1175 (2693)
.+..+.++||+|||.+++..|.+|....+. ..+|||||..-+.. ...- |...+.+ ++..+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 466789999999999999999998776554 45999999855432 2222 2222322 4445555332
Q ss_pred --------HHHHHHHHhh-hhcCCccEEEEcHHHHHhccCCCcc------cc--cCc-------cEEEEccccccccccc
Q 000047 1176 --------EERRRLFKEK-IVHQKFNVLLTTYEYLMNKHDRPKL------SK--IQW-------HYIIIDEGHRIKNASC 1231 (2693)
Q Consensus 1176 --------~eRk~l~ke~-i~~~kfdVVITTYE~Lik~~Dr~~L------~k--ikW-------d~VIIDEAHRIKN~sS 1231 (2693)
..-....... ......+|+|+|.+.|.+....... .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 1111111110 1122589999999999663210010 11 122 3799999999955 34
Q ss_pred hHHHHHHhhcccccccccccCCC-------C--CHHHHHHHhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQ-------N--NLEELWALLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQ-------N--nLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
+.+.++..++..+.|..|||--. | ...++++++--| ...+.|.+.+.+-+..
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V 278 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDI 278 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEE
Confidence 56788889999999999999743 1 112355555443 4577888877666554
|
|
| >PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.1e-07 Score=89.23 Aligned_cols=61 Identities=36% Similarity=0.567 Sum_probs=44.3
Q ss_pred CCCCCCCCChhHHHHHHHHhhccCCCCCCCCCCccccccccccccccccccCCCccccccccccccCCHHHHH
Q 000047 1642 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFE 1714 (2693)
Q Consensus 1642 ~~~p~rl~~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRG~r~rk~~~Y~d~~te~q~l 1714 (2693)
..+|.|||+++|||++|..+.... ..+...........+|||+|+||.++|+|+|||+|||
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~------------~~~~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEE------------LEKEEEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhh------------hhhhhhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 357889999999999998732110 0111112223446789999999999999999999996
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=100.50 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=62.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC----CCCcc--------------
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----DWNPQ-------------- 1511 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp----pWNP~-------------- 1511 (2693)
++.++-|...++.+-..+ -|.....+++-+|++|..+.+.|.+..+.+||=... -+||.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 566777777777654443 365556667889999999999999999999884322 13432
Q ss_pred chhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1512 ~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
.-.||.|||+| +.+-..|||+|+.+....++
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhcc
Confidence 22455555555 55669999999987766554
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-05 Score=101.74 Aligned_cols=112 Identities=13% Similarity=0.296 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
+..++..++..| ..|++|.|||......+++++++...+.+++.+++..+..+. +.| .++.| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W----~~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW----KKYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc----cceeE-EEEeceEE
Confidence 445556666654 458999999999999999999999999999999987765532 334 23444 55567888
Q ss_pred cccCccc--cCEEEEe--cCCCCccc--hhhhhhhhcccCCcccEEEEE
Q 000047 1491 VGVNLQA--ADTVIIF--DTDWNPQV--DLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1491 eGLNLQa--ADtVIiy--DppWNP~~--diQAIGRAHRIGQkKeV~VyR 1533 (2693)
.||++-. .|.|..| ....-|.+ ..|.+||+..+.. +++.||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 9999865 5777767 44455665 5899999988775 5566654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.7e-05 Score=102.46 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=90.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--C
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--R 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--s 1165 (2693)
+++++|.+.+.--. ...+.|.|.+.+++-|||+++=.+++. ++.. .+-+|.|.|--.+.+ =..++..+.- +
T Consensus 223 ~~fewq~ecls~~~--~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPR--LLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcchh--hhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 67788888875322 236789999999999999987544433 2322 233677888655444 3444444432 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc---cccCccEEEEcccccccc--ccchHHHHHHhh
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL---SKIQWHYIIIDEGHRIKN--ASCKLNADLKHY 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L---~kikWd~VIIDEAHRIKN--~sSKlsraLk~L 1240 (2693)
+.+-.|.|... ..-....-.|.|+|.+.-....+. .+ ......+|||||-|-+.. .+.-+-..|..+
T Consensus 298 ~~ve~y~g~~~-------p~~~~k~~sv~i~tiEkanslin~-lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 298 FPVEEYAGRFP-------PEKRRKRESVAIATIEKANSLINS-LIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred CcchhhcccCC-------CCCcccceeeeeeehHhhHhHHHH-HHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 55555655321 111223567889998865432211 11 112347899999999854 333333333322
Q ss_pred ----cc--cccccccccCCCCCHHH
Q 000047 1241 ----QS--SHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1241 ----ka--~~RLLLTGTPLQNnLeE 1259 (2693)
.. -..+++|||-.+|.+-.
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~~lL~ 394 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNNSLLQ 394 (1008)
T ss_pred HHhccccceeEeeeecccCChHHHH
Confidence 11 23589999986554433
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0012 Score=85.76 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=57.3
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC------CCc--------------
Q 000047 1451 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD------WNP-------------- 1510 (2693)
Q Consensus 1451 ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp------WNP-------------- 1510 (2693)
+-++-|+.+.+.+...++ |...-.+.+-++|+|..+.+.|.+..+.+|| ||- +||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 446667888887766554 5443445677899999999999998888886 433 333
Q ss_pred cchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1511 ~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+.-.||.|||+|.|-. .+|||++.-+
T Consensus 582 AsA~QRaGRAGRtgPG---KCfRLYt~~a 607 (902)
T KOG0923|consen 582 ASANQRAGRAGRTGPG---KCFRLYTAWA 607 (902)
T ss_pred hhhhhhccccCCCCCC---ceEEeechhh
Confidence 3346999999988865 5777777433
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=101.98 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=57.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE--------EecC---------CC-Cccchh
Q 000047 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI--------IFDT---------DW-NPQVDL 1514 (2693)
Q Consensus 1453 ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI--------iyDp---------pW-NP~~di 1514 (2693)
++-|..-.+.++.. +-|.......+.++++|.++.+.|.++.+.+|| +||. .| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q~---RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQM---RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHhh---hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 34455555555443 446555667889999999999999999999998 3443 34 445567
Q ss_pred hhhhhhcccCCcccEEEEEEEeC
Q 000047 1515 QAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1515 QAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
||.|||+|+|-. +.|||+..
T Consensus 684 QRAGRAGRtgpG---HcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTGPG---HCYRLYSS 703 (1172)
T ss_pred hhccccCCCCCC---ceeehhhh
Confidence 999999999866 78888764
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=87.66 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCChHHHHHH-HHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhh
Q 000047 1109 QLNGILADEMGLGKTVQVIA-LICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIA-LIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~ 1187 (2693)
+.--+|-.-+|.|||...|- ++...+ .....+||+.|+.++. +|+.+...+..+. |.-.-..+ ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~-------~~ 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR-------TH 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec-------cc
Confidence 33457777899999998764 333232 2345699999998874 3555555455432 22221111 11
Q ss_pred cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHH-HHHhhc---ccccccccccC
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNA-DLKHYQ---SSHRLLLTGTP 1252 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsr-aLk~Lk---a~~RLLLTGTP 1252 (2693)
.++.-|-+++|.++...... .....+|++||+||||-. +..+-..+ .+..+. ....|++||||
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 35566778888877653322 344568999999999985 33332222 223331 13578999999
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-05 Score=91.07 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.||.|++-...+...+.++..+|+-.+||+|||+.+|..+..++...... .++++++++..+ .+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999999988888999999999999999999987765443332221 256777776443 4445555543
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-05 Score=91.07 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.||.|++-...+...+.++..+|+-.+||+|||+.+|..+..++...... .++++++++..+ .+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999999988888999999999999999999987765443332221 256777776443 4445555543
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0015 Score=88.05 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=92.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+......|..|||.+.....-+.+...|...|++...|+-.-. .|+.-|-.+ ++..+ .+=|+|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 446999999999999999999999999999999999999999999988876554 555555544 34333 3678999
Q ss_pred ccccccCcccc-C----------EEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1488 AGGVGVNLQAA-D----------TVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1488 AGGeGLNLQaA-D----------tVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
.+|+|-||.-- + +||--...-+-..+.|--||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 99999998642 2 567777777777788999999999944
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0018 Score=88.84 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=35.7
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
+..+++|+|.+...|+|+ ++|.+|.-= -.....+|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~-dfd~~~~~~--~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDH-DYDWAIADP--SSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEecc-cCCeeeecc--CcHHHHHHHhhcccccccCCC
Confidence 355789999999999996 466665422 234468999999999987643
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=88.92 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=76.2
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCcccc--------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA--------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA--------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
...+.|+++... |+|| ++||+.||.|++- ..-|.++++|+....+|.+||+||.||.....+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456699888654 4455 5999999999952 3457899999999999999999999999887666777778
Q ss_pred CHHHHHHHHHHHHHHHHhhhccc
Q 000047 1539 TVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqa 1561 (2693)
..|.+......+|+.-..+...+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 88999999999999888777654
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00071 Score=77.28 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHhhcCCC-eEEEcCCCCChHHHHHHHHHHHHH-----hcCCCCCEEEEecCch-HHHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLN-GILADEMGLGKTVQVIALICYLME-----TKNDRGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~k~~~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
+|-+.|.+++..++. ... .++....|+|||.+..+++..++. .....+++||++|+.. +.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999976654 444 788999999999888888877742 2455667999999744 5676666665
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0005 Score=87.12 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCC----eEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQY----RYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGi----kylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+.|+.....++.++...+-|+|-||..++.++++....+ ..+- .+..+.|+-..++|.++-...--++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 3457777778888888889999999999998877644332 2221 23456788888899888765433332
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHH
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkI 1544 (2693)
.-+|+|.|+.+|||+-..|.||.+..|.+...+.|..|||+|-.. +-...+.+...-+|..-
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk--~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK--PSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC--CceEEEEEeccchhhHh
Confidence 358999999999999999999999999999999999999999653 32222344456666543
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=89.79 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=79.3
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHhhcCCe-EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1424 atGhKVLIFSQft~tLDILed~L~~rGik-ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
+.|.-|+-||... +-.+...++.+|.. .+.|.|+.+++.|..--..||+++.++. +|++|+|.|.|||| .++.||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d-vlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD-VLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc-eEEeeccccccccc-ceeEEE
Confidence 4577888887543 22344455556655 9999999999999999999999887765 58889999999998 689999
Q ss_pred EecCC---------CCccchhhhhhhhcccCCccc
Q 000047 1503 IFDTD---------WNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1503 iyDpp---------WNP~~diQAIGRAHRIGQkKe 1528 (2693)
||+.- -.-.+..|--|||+|.|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 99876 233455799999999998754
|
|
| >PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=67.87 Aligned_cols=70 Identities=26% Similarity=0.429 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000047 914 ERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKI 983 (2693)
Q Consensus 914 e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~ 983 (2693)
+++.+.+..+..++.+|..|..+|.++.+.++.+.+++.+.|..||...++++.++.+|.+++||++|++
T Consensus 4 ~~~~r~k~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 4 EEPKRQKTHHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 4455667888899999999999999999999999999999999999999999999999999999999974
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00035 Score=84.25 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc---
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH--- 1167 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk--- 1167 (2693)
+-..|...+.|+.. +...++..+.|+|||+.++++....+..+. ...++|+-|.-.. .|...|.|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 34568887777754 557788899999999999999887654433 3333443333211 12222222110
Q ss_pred EEE-----------EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHH
Q 000047 1168 KIV-----------YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1168 VIv-----------y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
... +.|... +...+....-.|-|....+++.. .+.-++|||||||++.- ......
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymRGr-------tl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMRGR-------TFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhcCC-------cccCCEEEEechhcCCH--HHHHHH
Confidence 000 011100 01111112345777777777641 23458999999999854 455566
Q ss_pred HHhhcccccccccccCCCCCH
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnL 1257 (2693)
+.++....+++|+|-|-|.++
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HhhcCCCCEEEEeCChhhccC
Confidence 678888899999999976654
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00077 Score=92.02 Aligned_cols=183 Identities=22% Similarity=0.244 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCC--hHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLG--KTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLG--KTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsL 1166 (2693)
..+.+||...+.-..... ....+++++.|+| ||+.+..++.+...... ...+++++|..+..+|..+...++..-
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRGE-IKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhhh-hccceeccchHHHHHHHHHhhhhcccc
Confidence 355666766553332222 2236889999999 99998877776654443 345899999888899988887663211
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc--CCCcccccCc---cEEEEcccccccccc---------ch
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH--DRPKLSKIQW---HYIIIDEGHRIKNAS---------CK 1232 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~--Dr~~L~kikW---d~VIIDEAHRIKN~s---------SK 1232 (2693)
..++.......................++..++...... ....+....| +++++||+|.+.+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred chhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111100000000000000000010233333333221 1123444456 899999999997742 22
Q ss_pred HHHHHHhhcc--------cccccccccCCCCCHHHHHHHhhhccCCCCCC
Q 000047 1233 LNADLKHYQS--------SHRLLLTGTPLQNNLEELWALLNFLLPNIFNS 1274 (2693)
Q Consensus 1233 lsraLk~Lka--------~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S 1274 (2693)
.+..+..... ...+++++||......+++...+++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 3333332211 12357899999888888877666666655544
|
|
| >smart00573 HSA domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=65.12 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000047 915 RQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLK 982 (2693)
Q Consensus 915 ~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk 982 (2693)
++.+.+..+..+++++..|..+|.+..+.++.+++++.+.|..||...++++.++.+|.+++||++|+
T Consensus 5 ~e~r~k~h~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~ 72 (73)
T smart00573 5 EERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLA 72 (73)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778889999999999999999999999999999999999999999999888999999999986
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=84.87 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=101.4
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH--------HHHHH-HHHCCCC--cEEEEcCC
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG--------WESEI-NFWAPRI--HKIVYCGP 1174 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q--------W~eEf-eKwaPsL--kVIvy~Gs 1174 (2693)
+....|+=+-+|||+|||++.+-++..|-...+..+ |+||||.-.+.- -.+.| ..++.+. ..++|.
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~K-FIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~-- 147 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFK-FIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD-- 147 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHhCcee-EEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec--
Confidence 444567767899999999999999988876655554 999999754421 12233 3333333 333343
Q ss_pred hHHHHHHHHhhhhcCCccEEEEcHHHHHhcc-CCCc-----ccccC---------------ccEEEEccccccccccchH
Q 000047 1175 PEERRRLFKEKIVHQKFNVLLTTYEYLMNKH-DRPK-----LSKIQ---------------WHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1175 ~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~-Dr~~-----L~kik---------------Wd~VIIDEAHRIKN~sSKl 1233 (2693)
.......+ -......|+|.+.+.+.+.. +... ..... --+|||||-|+|... .+.
T Consensus 148 ~~~~~~~~---~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~ 223 (985)
T COG3587 148 EDIEKFKF---KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKT 223 (985)
T ss_pred hHHHHHhh---ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHH
Confidence 22211111 23456788899888886641 0111 11111 137999999999876 788
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHH-HhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWA-LLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwS-LLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
+.++..+.....|=..||= .|-|. ++- .+.+.+.|.+...+.+..
T Consensus 224 ~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~v 269 (985)
T COG3587 224 YGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIRV 269 (985)
T ss_pred HHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhheee
Confidence 8999999888777777774 33333 221 234566777766555443
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0034 Score=73.84 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH-----HHHCCCC
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI-----NFWAPRI 1166 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf-----eKwaPsL 1166 (2693)
-.+|...++.|. +....++....|+|||+.|++...+++..+. ...++|+-|..-...+.--+ +|..|-+
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTT
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 467999888777 3567788899999999999999998887744 44466666655332221100 1111111
Q ss_pred cEEE-----EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1167 HKIV-----YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1167 kVIv-----y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
..+. +.+. .....+ .....|-+....+++. ..+++.+||||||+++... .+...+.++.
T Consensus 81 ~p~~d~l~~~~~~-~~~~~~------~~~~~Ie~~~~~~iRG-------rt~~~~~iIvDEaQN~t~~--~~k~ilTR~g 144 (205)
T PF02562_consen 81 RPIYDALEELFGK-EKLEEL------IQNGKIEIEPLAFIRG-------RTFDNAFIIVDEAQNLTPE--ELKMILTRIG 144 (205)
T ss_dssp HHHHHHHTTTS-T-TCHHHH------HHTTSEEEEEGGGGTT---------B-SEEEEE-SGGG--HH--HHHHHHTTB-
T ss_pred HHHHHHHHHHhCh-HhHHHH------hhcCeEEEEehhhhcC-------ccccceEEEEecccCCCHH--HHHHHHcccC
Confidence 0000 0010 001111 1234566666666653 1234689999999998533 3445566777
Q ss_pred ccccccccccCCCCCHH
Q 000047 1242 SSHRLLLTGTPLQNNLE 1258 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLe 1258 (2693)
...+++++|-|.|.+..
T Consensus 145 ~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 145 EGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TT-EEEEEE--------
T ss_pred CCcEEEEecCceeecCC
Confidence 78899999999776654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=69.25 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwa 1163 (2693)
|..+++-|+-|+-.| ..|-|.-..||=|||+++..+++ +... ..+++-||+-+..|. +|...|-+|+
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~-~~AL--~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAA-LNAL--QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHH-HHHT--TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHH-HHHH--hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 456777788877544 23558889999999999854443 3322 234578888887773 4888888888
Q ss_pred CCCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHh-----ccCC--CcccccCccEEEEcccccc
Q 000047 1164 PRIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMN-----KHDR--PKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1164 PsLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik-----~~Dr--~~L~kikWd~VIIDEAHRI 1226 (2693)
++.+-...... ..|+..+ ..+|+.+|-..+.- .... .......++++||||++-+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y-------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAY-------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHHH-------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 45554444432 3333332 35788887765542 2211 1222457899999999886
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.045 Score=69.88 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh----c-----CCeEEEEeCCCCHHHHHHHHHHH--hCCCCCceEEEeeecccccccC
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF----K-----QYRYLRLDGHTSGGDRGALIDKF--NQQDSPFFIFLLSIRAGGVGVN 1494 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~----r-----GikylRLDGSTS~eERqeiId~F--N~~dSd~fVfLLSTrAGGeGLN 1494 (2693)
..-||||-.-.+.++...+.+.. . -++++-|+ +.+.+.+.+-- +..+..-+-+++||..+..-|.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 45788998776655544443321 1 13444444 22233222111 1112223557999999999988
Q ss_pred ccccCEEEEecCC------CCcc-----------chhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1495 LQAADTVIIFDTD------WNPQ-----------VDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1495 LQaADtVIiyDpp------WNP~-----------~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+..+-+|| |+- +||. .-.||.-|++|.|.+++-..|+|+++...+
T Consensus 329 idgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 329 IDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 87766665 433 4553 346888999999999999999999976543
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0076 Score=68.37 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=57.0
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcC----CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec--ccccccCcc
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--AGGVGVNLQ 1496 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rG----ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr--AGGeGLNLQ 1496 (2693)
...+.++|||+..-..++.+.++|...+ +.+. .. ...++.++++.|..... .+|+++. ...+|||+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCC
Confidence 4556899999999999999999997653 3222 22 24578999999987544 3788888 899999998
Q ss_pred c--cCEEEEecCCC
Q 000047 1497 A--ADTVIIFDTDW 1508 (2693)
Q Consensus 1497 a--ADtVIiyDppW 1508 (2693)
. |..||+.-.|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 89999999997
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.023 Score=76.99 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHHHhhhhcCCccEEE
Q 000047 1119 GLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPP--EERRRLFKEKIVHQKFNVLL 1195 (2693)
Q Consensus 1119 GLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVI 1195 (2693)
|+|||-..+.++...+..++ -+||++|. ++..|+...|...++...+.+|+... .+|.+.|.. +..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~-~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA-VLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH-HhCCCCcEEE
Confidence 99999999999988876543 38999997 66789999999999756777788754 445455533 5567889999
Q ss_pred EcHHHHHhccCCCcccccCccEEEEcccccc--ccccchHH--HHH---H-hhcccccccccccC
Q 000047 1196 TTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI--KNASCKLN--ADL---K-HYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1196 TTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI--KN~sSKls--raL---k-~Lka~~RLLLTGTP 1252 (2693)
-|...+.- .--+..+|||||=|.- |....-++ +.+ + .+..-..|+-|+||
T Consensus 246 GtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 99986632 3335689999998874 33222221 111 1 22344557779999
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=74.37 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=54.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH-HHHHHC-CCCcEEEEcCChHHHHHHHHhhhhcC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES-EINFWA-PRIHKIVYCGPPEERRRLFKEKIVHQ 1189 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e-EfeKwa-PsLkVIvy~Gs~~eRk~l~ke~i~~~ 1189 (2693)
.|+--..|+|||+.++.++..+..... ....+++|....+.+... .|..-. +.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~-~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------------ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEE-GKKVLYLCGNHPLRNKLREQLAKKYNPK------------------------ 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcccc-CCceEEEEecchHHHHHHHHHhhhcccc------------------------
Confidence 356678999999999999988822222 334688888777666433 443222 10
Q ss_pred CccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1190 kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
.....+..+..++............+|+|||||||+|..
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 111122223333332211233456789999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=75.18 Aligned_cols=76 Identities=22% Similarity=0.394 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPsLk 1167 (2693)
.+|-.-|..+|...+. +.=.||....|+|||++..+++++|.+. ..+|+||++|..+ +.|..+.|.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 4788999999998875 5556899999999999999999998876 5678999999876 577777776654 55
Q ss_pred EEEEc
Q 000047 1168 KIVYC 1172 (2693)
Q Consensus 1168 VIvy~ 1172 (2693)
++...
T Consensus 481 VvRl~ 485 (935)
T KOG1802|consen 481 VVRLC 485 (935)
T ss_pred Eeeee
Confidence 55443
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.038 Score=64.35 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEE
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKI 1169 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVI 1169 (2693)
+|-+-|.+++..++. ....-.+|.-.-|+|||.....++. .+...+ ..+++++|+..... ++.+-..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~-~~~~~g--~~v~~~apT~~Aa~---~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAE-ALEAAG--KRVIGLAPTNKAAK---ELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHH-HHHHTT----EEEEESSHHHHH---HHHHHHT-----
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHH-HHHhCC--CeEEEECCcHHHHH---HHHHhhC-----
Confidence 477899999998865 1223357778899999987655444 444332 45899999866533 2221110
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc----ccCccEEEEccccccccccchHHHHHHhhcc-cc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS----KIQWHYIIIDEGHRIKNASCKLNADLKHYQS-SH 1244 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~----kikWd~VIIDEAHRIKN~sSKlsraLk~Lka-~~ 1244 (2693)
+-..|...+.......... ...+++||||||-.+-.. .+...+..+.. ..
T Consensus 68 -----------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~--~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 -----------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR--QLARLLRLAKKSGA 122 (196)
T ss_dssp -----------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH--HHHHHHHHS-T-T-
T ss_pred -----------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHH--HHHHHHHHHHhcCC
Confidence 1112333332222211111 345689999999987432 23344444433 66
Q ss_pred cccccccCCC
Q 000047 1245 RLLLTGTPLQ 1254 (2693)
Q Consensus 1245 RLLLTGTPLQ 1254 (2693)
+|+|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 8999998854
|
|
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.16 Score=56.89 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=56.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000047 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ 1020 (2693)
Q Consensus 944 ~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~ 1020 (2693)
-.-|.+++.+.|..|+++.++++++...+.+++.++..+..++.. . ......||.+||.|||-|.+++.....
T Consensus 62 ~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e--~~rq~~rl~fLl~QTElfsHF~~~k~~ 134 (139)
T PF13892_consen 62 TQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E--AKRQQRRLNFLLTQTELFSHFMQNKAK 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H--HHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 345667888999999999999999888888888887776554421 1 122357999999999999999876643
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.063 Score=72.78 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIA 1128 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIA 1128 (2693)
.++|+-|+.-...+++.+++..+|+|-.+||+|||+.-|+
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 5678999998888999999999999999999999986543
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.038 Score=70.98 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=49.6
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
..+-++.....+|-|.+-..-+...+..+..|+|-+..|+|||+.-++++..+....+..-.-||-|-.
T Consensus 7 ~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 7 DLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred CeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 445566667889999876555566677888999999999999999998876554444433334676654
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=71.99 Aligned_cols=42 Identities=19% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcC--CC-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ--LN-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--ln-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++ .+ -||....|+|||..+..|...|+..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 444444444444332 23 4789999999999999998888654
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.024 Score=60.18 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecCch-HHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPSSV-LPGWESEINFW-APRIHKIVYCGPPEERRRLFK 1183 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPtSL-L~QW~eEfeKw-aPsLkVIvy~Gs~~eRk~l~k 1183 (2693)
+..++|..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++... ...... ..+.. .++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~---~l~- 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTSD---ELR- 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-HH---HHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCHH---HHH-
Confidence 44568889999999998877776654321 11222344555443 34444444322 211111 11111 111
Q ss_pred hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh--cccccccccccC
Q 000047 1184 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHRLLLTGTP 1252 (2693)
Q Consensus 1184 e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L--ka~~RLLLTGTP 1252 (2693)
+.+.. .+....-.+|||||+|++. .......++.+ .....++|.|||
T Consensus 77 ---------------~~~~~-----~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 ---------------SLLID-----ALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ---------------HHHHH-----HHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------HHHHH-----HHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 11111 1222223789999999984 24455555555 455669999999
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.13 Score=69.85 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
...|-+.|..+|.+++. +....|+-...|+|||.+.++++..++..+. ++||++|+.. +.+..+.+..
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999988654 3356788899999999999999988876432 6999999866 4666666655
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.33 Score=66.02 Aligned_cols=139 Identities=20% Similarity=0.171 Sum_probs=71.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH-HHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE-INFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE-feKwa--PsL 1166 (2693)
.|.+||.+.+.-++. ..++++...-|||==-.++.++..+ -..+ .|+++=+ ...|.++ |.... +.+
T Consensus 13 ~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~-sL~LvLN--~~~~ee~~f~s~lk~~~~ 81 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPG-SLVLVLN--TQEAEEEYFSSKLKEPLV 81 (892)
T ss_pred ccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCcc-ceEEEec--CchhhHHHHHHhcCcCCC
Confidence 388999998877663 4566777778999544443333322 2233 3333322 3446555 11111 111
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL 1246 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RL 1246 (2693)
..+.-.-....|+..+. .-.|+++|--.|..+.-...+.-.+...|+++=||.+.+.. .-.-+++.|+.+.+.
T Consensus 82 t~~~s~ls~~~R~~~Yl------~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets-~eaFIlRl~R~knk~ 154 (892)
T KOG0442|consen 82 TEDPSELSVNKRRSKYL------EGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETS-QEAFILRLYRSKNKT 154 (892)
T ss_pred ccChhhcchhhhHHhhh------cCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcc-hhHHHHHHHHHhcCC
Confidence 11111112233333322 22344444444444333345556678899999999997644 334455555554443
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.076 Score=55.54 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1097 SGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1097 eGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.++...... +...+|..+.|+|||..+-.++..+. ....+++++........+
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGL 62 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhh
Confidence 344444444333 55678899999999987766665554 223445555544433333
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.052 Score=71.33 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eE 1158 (2693)
...|-+-|..++.++.. +..=.|+-.+.|+|||.+..-+|..++..+ ..+||.+|+.+ +.|..+.
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 35677889999988875 223346778999999999999999988654 45899999866 5776664
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.22 Score=68.63 Aligned_cols=134 Identities=22% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|.+-|++++..+.. +.-.||....|+|||.++-+++..+... ....++++++|+..-.....|.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhc----CCc
Confidence 45789999999987753 5568899999999998876666654432 22246888999877766544421 000
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLL 1247 (2693)
. ....+++.. .... . . ....-.....++||||||+.+-.. .+.+.+..+....+|+
T Consensus 392 a-------~Tih~lL~~---~~~~--~------~----~~~~~~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 392 A-------STIHRLLGY---GPDT--F------R----HNHLEDPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLL 447 (720)
T ss_pred c-------ccHHHHhhc---cCCc--c------c----hhhhhccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEE
Confidence 0 000011100 0000 0 0 000001245789999999998432 3445556667777899
Q ss_pred ccccCCC
Q 000047 1248 LTGTPLQ 1254 (2693)
Q Consensus 1248 LTGTPLQ 1254 (2693)
|-|=|-|
T Consensus 448 lvGD~~Q 454 (720)
T TIGR01448 448 LVGDTDQ 454 (720)
T ss_pred EECcccc
Confidence 9887754
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.2 Score=59.99 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=49.9
Q ss_pred CeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCC-----HHHHHHHHHHHhCCCC-CceEEEee--ecccccccCccc-
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS-----GGDRGALIDKFNQQDS-PFFIFLLS--IRAGGVGVNLQA- 1497 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~rGikylRLDGSTS-----~eERqeiId~FN~~dS-d~fVfLLS--TrAGGeGLNLQa- 1497 (2693)
.=|++|...-..+..+..++...|+- .+|.|.-+ .+--..+++.|...-. ..-.+|++ -.-+++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 56888888888888888888766641 12222110 0013455666643111 11135555 344568999988
Q ss_pred -cCEEEEecCCCC
Q 000047 1498 -ADTVIIFDTDWN 1509 (2693)
Q Consensus 1498 -ADtVIiyDppWN 1509 (2693)
+..||...+|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 899999999885
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.23 Score=66.87 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCchHHH-HHHHHHHHCCCCcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSSVLPG-WESEINFWAPRIHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtSLL~Q-W~eEfeKwaPsLkVI 1169 (2693)
++|+.++...+. +.-.||....|+|||.++..++..+...... ...+++++|+..-.. ..+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999877765 5667899999999999988888777654332 135899999866544 33333222211110
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-C-----CcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-R-----PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r-----~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
..... . ...+-..|...+..... . ..-....+++||||||-.+-. ..+.+.+..+...
T Consensus 223 ----~~~~~-----~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 ----AEALI-----A-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPPN 286 (586)
T ss_pred ----chhhh-----h-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCCC
Confidence 00000 0 00111223333322110 0 011224689999999987732 2345556667777
Q ss_pred ccccccccCCC
Q 000047 1244 HRLLLTGTPLQ 1254 (2693)
Q Consensus 1244 ~RLLLTGTPLQ 1254 (2693)
.||+|.|=|-|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 88999998754
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.054 Score=70.66 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=57.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-CchHHHHHHHHH-----HHCCCCcEEEEcCChHHHHHH--HHhhhh
Q 000047 1116 DEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-SSVLPGWESEIN-----FWAPRIHKIVYCGPPEERRRL--FKEKIV 1187 (2693)
Q Consensus 1116 DEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-tSLL~QW~eEfe-----KwaPsLkVIvy~Gs~~eRk~l--~ke~i~ 1187 (2693)
+.||+|||+++.++|++++..+.. -+|..|- ++++..-...|. ++.- -.++.|.+..-..+.+ +.+ -
T Consensus 4 matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fse--h 78 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSE--H 78 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCc--c
Confidence 579999999999999999876543 3666664 566654433331 1110 1122222221111110 111 2
Q ss_pred cCCccEEEEcHHHHHhccCCCc-----cccc--CccEEEEcccccc
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPK-----LSKI--QWHYIIIDEGHRI 1226 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~-----L~ki--kWd~VIIDEAHRI 1226 (2693)
.....|+.||.+.|..+.-+.. |... .--+++-||||++
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 3467899999988865432211 1111 1124566999998
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.4 Score=64.94 Aligned_cols=143 Identities=13% Similarity=0.196 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHHHHHH-HHHHCCCCcE
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPGWESE-INFWAPRIHK 1168 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~QW~eE-feKwaPsLkV 1168 (2693)
+-++|+.++...+. +.-.||....|+|||.+...++..+.+... ....+++++|+..-..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976654 556789999999999998888887765432 22357888998765443333 2211111100
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC------CcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr------~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
....+. .+..-..|...+...... ..-....+++||||||-.+- ....+..+..+..
T Consensus 229 -----~~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQKK----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhhh----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 000000 001112233333221110 01123467999999998873 3334556677788
Q ss_pred cccccccccCCC
Q 000047 1243 SHRLLLTGTPLQ 1254 (2693)
Q Consensus 1243 ~~RLLLTGTPLQ 1254 (2693)
..||+|-|=|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 889999888754
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.24 Score=67.63 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...++.|...+.++. +. ||...-|+|||..+..|...|..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666666666555542 33 78899999999999888887754
|
|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=21 Score=54.59 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC--CCCCCCCcccCCCCcccccccccccc
Q 000047 1737 PTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPPSKRGRGRPRR--ADKSPVPVVLPAPSGTVKVEKDAMTG 1814 (2693)
Q Consensus 1737 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~rgrp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 1814 (2693)
+..+...+.+....++..+..-|+.+.++.++.......+|+....+++|.- ...+|.|+.+|++ +-.-.-+..+..
T Consensus 2711 ~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~~P~~p~ap~~P~~~~~p~apAPP~aPa~-~Pap~~~~~~~a 2789 (3151)
T PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA-GPPRRLTRPAVA 2789 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_pred ccccCCCCCCCCcccccccCCCCcccccccCCCCCCCCcccCCCCCCccCCCCCCCCCcCCCCccccCCCCcccccCccc
Q 000047 1815 QSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKI 1894 (2693)
Q Consensus 1815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1894 (2693)
-...+.++.+........-........-.++...+.++....+......++.|..|.+..-.+-+.-.-..-.+|||
T Consensus 2790 p~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~~Pa~~~PPPp~~~P~aP~pP~~p~~P~~~~~g~~~~~~~~~r~p--- 2866 (3151)
T PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP--- 2866 (3151)
T ss_pred CCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccccCC---
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccCCCcccCCCCCCCCCCCCCC-cccCCcCccCCCCcceecccC
Q 000047 1895 GLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPS-AVKGQSGTIDPSSAVAALNSE 1973 (2693)
Q Consensus 1895 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~tv~s~~~~~~p~~~~~s-a~~~~~~t~~~~~~~~~~~s~ 1973 (2693)
|..+....-+.| .......+-.- .++....-.+-.+..+++...+.+ ...+..+++-..+. -+
T Consensus 2867 ----P~~sp~~~ppaP-----~~PP~~~l~~P--~~~~~t~s~alP~~~~~~p~~Pp~p~Pp~P~p~~p~~ps-----p~ 2930 (3151)
T PHA03247 2867 ----PSRSPAAKPAAP-----ARPPVRRLARP--AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ-----PQ 2930 (3151)
T ss_pred ----CCCCCCCCCCCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_pred CCCCCCCCCCCCCCCCCCccccceecccccccccCCCCCCCCCCccccCCCCcc
Q 000047 1974 LNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPIS 2027 (2693)
Q Consensus 1974 ~~~p~~s~~~~~q~~~~~ps~~~q~kgq~~k~q~g~~~prrrgkkq~~~~p~~p 2027 (2693)
+++|.|+..+.....++.|..+=+-+|----.+.|+-.|-|-----...+|+.|
T Consensus 2931 PP~ppPprP~pp~~P~~~p~~~~~p~~~~p~~~~~~~~~~~~~~pR~~~pp~~p 2984 (3151)
T PHA03247 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccCcccCCCCCCC
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.26 Score=62.25 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH---------------HHH
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP---------------GWE 1156 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~---------------QW~ 1156 (2693)
--||.-++..|+. ..-.=..|...-|+|||+.|+|...+-....+..+.++|--|.--+. -|.
T Consensus 230 n~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 230 NAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 3488888876653 11122356778999999999877665444444444444433432222 243
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHH
Q 000047 1157 SEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1157 eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
.-|.. ++.++.-..... ...+...+......|--.|| ++. +.+.-.+||||||+++.-+. +-..
T Consensus 308 q~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~--IRG-------RSl~~~FiIIDEaQNLTphe--ikTi 371 (436)
T COG1875 308 QAIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTY--IRG-------RSLPDSFIIIDEAQNLTPHE--LKTI 371 (436)
T ss_pred HHHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeee--ecc-------cccccceEEEehhhccCHHH--HHHH
Confidence 33211 111110000000 11111111112222222222 111 12334789999999985432 3334
Q ss_pred HHhhcccccccccccCCC
Q 000047 1237 LKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQ 1254 (2693)
+.+.-...+|.|||-|-|
T Consensus 372 ltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 372 LTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred HHhccCCCEEEEcCCHHH
Confidence 455566788999998844
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.36 Score=65.33 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.+++ + -||....|+|||..+..|+..|..
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555554444443 3 388999999999999888888765
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.26 Score=68.34 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcC--CCe-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ--LNG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++ ... ||..+.|+|||..+..|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 555555555554443 233 799999999999998888877643
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.7 Score=57.73 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|.+.+.++..+..++ .+.||..+.|+|||-.+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554443332 35689999999999999888877753
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.29 Score=64.32 Aligned_cols=41 Identities=22% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLN---GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln---GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|..++..|...+.++.- .|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 66666666555555442 389999999999999888877654
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.3 Score=59.16 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+.||..+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999998777766543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.6 Score=54.68 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCc--hHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSS--VLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtS--LL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
...++...+|.|||-++.-++.++.... .....+++|+=.. .-..|+ +..|+-.+.+-++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEe--------------
Confidence 3457889999999999877777665432 1223455554332 112222 45555322221111
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhcc--cccccccccCCCCCHHHHH
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQS--SHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lka--~~RLLLTGTPLQNnLeELw 1261 (2693)
+.++..+..... ...++++||||++.+...... .+...+..... ...|.|+||--++.+.+++
T Consensus 239 --------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 --------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 112232322111 113579999999998854322 22233333322 3558899999888898888
Q ss_pred HHhhhccCC-----------CCCChhHHHHHhcCcccCC
Q 000047 1262 ALLNFLLPN-----------IFNSSEDFSQWFNKPFESN 1289 (2693)
Q Consensus 1262 SLLnFL~P~-----------iF~S~k~F~e~F~kP~e~~ 1289 (2693)
.-+..+.+. -++..-.+...+..|+...
T Consensus 307 ~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 307 HQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYV 345 (388)
T ss_pred HHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEE
Confidence 877654332 1233345555666676543
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.3 Score=56.81 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP 1148 (2693)
.++..+||.|||..++.++..+... ...++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999998888776543 234677755
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.31 Score=68.13 Aligned_cols=109 Identities=24% Similarity=0.256 Sum_probs=76.4
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-----HHHHHHHHHCCCCcEEEEcCChHHHH
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-----GWESEINFWAPRIHKIVYCGPPEERR 1179 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-----QW~eEfeKwaPsLkVIvy~Gs~~eRk 1179 (2693)
+|+.+.+.+++...|+|||++|-..+.. ....+.+.-|+|...+. .|...|.+- .++.++...|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5677889999999999999987433332 33445689999987763 477777666 4566666666544333
Q ss_pred HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1180 ~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
++ ...-+|+|.|++.+.... .--..++.|+||.|-+...
T Consensus 1230 kl------~~~~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1230 KL------LQKGQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred HH------hhhcceEEechhHHHHHh-----hhhhcceEeeehhhhhccc
Confidence 22 246799999999885421 2234689999999998753
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.8 Score=58.39 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|.+++..|...+..+. ..|+..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 6777888888877765 3578999999999999999888876
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.4 Score=50.20 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH-HHCCCCcEEE
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN-FWAPRIHKIV 1170 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe-KwaPsLkVIv 1170 (2693)
|.+.+..|..++.++. . -|+..+.|.||+-.+.+++..++....... .|-. ... ...+. .-.|++..+-
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~--c~~-c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGE--CRS-CRRIEEGNHPDFIIIK 74 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SS--SHH-HHHHHTT-CTTEEEEE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC--CHH-HHHHHhccCcceEEEe
Confidence 6777777877777653 2 388899999999999999998876554432 1111 111 11222 2233433331
Q ss_pred EcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhhccccccc
Q 000047 1171 YCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1171 y~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~Lka~~RLL 1247 (2693)
-.+.. -....+ ..+......... ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 75 ~~~~~~~i~i~~i-----------------r~i~~~~~~~~~-~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 75 PDKKKKSIKIDQI-----------------REIIEFLSLSPS-EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTTSSSSBSHHHH-----------------HHHHHHCTSS-T-TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccccchhhHHHH-----------------HHHHHHHHHHHh-cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 11110 000000 011111111111 24689999999999853 3334555555666677777
Q ss_pred ccccCCCCCHHHHH
Q 000047 1248 LTGTPLQNNLEELW 1261 (2693)
Q Consensus 1248 LTGTPLQNnLeELw 1261 (2693)
|+.+=..+-+.-+.
T Consensus 137 L~t~~~~~il~TI~ 150 (162)
T PF13177_consen 137 LITNNPSKILPTIR 150 (162)
T ss_dssp EEES-GGGS-HHHH
T ss_pred EEECChHHChHHHH
Confidence 77765544444443
|
... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.26 Score=50.86 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
+...+|.-.+|+|||..+..++..+.... ..++++.+......|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 34568899999999999887776653222 346777776655544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=91.25 E-value=18 Score=46.20 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHhh----cCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1089 GKLREYQMSGLRWLVSLYN----NQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~----n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+..+.+...++.++..... .+.+.+|..++|+|||..+.+++..++..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4667777777775543322 45677899999999999999999888754
|
|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=71 Score=49.61 Aligned_cols=302 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccCCCChhhhhhcccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc----------------cccccccCCCCCCC
Q 000047 1719 AESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQ----------------LQQSKEVTPPSKRG 1782 (2693)
Q Consensus 1719 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~p~~r~ 1782 (2693)
...........-......|...+..-+.+++..+|.+.+..+.++..+++ .....-..|+.-+.
T Consensus 2590 ~~pP~~~rPr~p~~~~p~p~~papp~P~PP~p~pP~PpPp~~~Ppa~~l~~~~~~a~p~~~~p~~~pa~~~~~~~~r~~p 2669 (3151)
T PHA03247 2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCcccCCCCcccccccccc-------ccccccCCCCCCCCcccccccCCCCcccccccCCCCCCCCccc
Q 000047 1783 RGRPRRADKSPVPVVLPAPSGTVKVEKDAM-------TGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVP 1855 (2693)
Q Consensus 1783 rgrp~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1855 (2693)
.+||......+.-+..+++-..|...+... +-........++...+...-.+.......++.+.....++...
T Consensus 2670 ~~~Pa~~s~p~~~p~~~a~~~pV~s~t~la~PPpp~P~P~P~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~ 2749 (3151)
T PHA03247 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCC-----CCccCCCCCCCCCcCCCCccccCCCCcccccCcccccccCCCCCCCCCCCCCCCCCCCc---ccccCCCCC
Q 000047 1856 VAPG-----SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP---QSESLNPSG 1927 (2693)
Q Consensus 1856 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---~~~~~~~~~ 1927 (2693)
.+.+ .-.+++.|+-|.+....+. .|-++..+.....++.+..-.....||.-+--. ......|++
T Consensus 2750 ~P~~p~ap~~P~~~~~p~apAPP~aPa~-------~Pap~~~~~~~ap~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~ 2822 (3151)
T PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCC
Q ss_pred CCcccCCCcccCCCCCCCCCCCC--CC-cccCCcCccCCCCcceecccCCC-CCCCCCCCCCCCCCCCccccceeccccc
Q 000047 1928 GESTATDGNVSSIPTAPVPDSVS--PS-AVKGQSGTIDPSSAVAALNSELN-TNLATAPPVPQPSPQFSSVSMQTKGQSR 2003 (2693)
Q Consensus 1928 ~~~~~~~~tv~s~~~~~~p~~~~--~s-a~~~~~~t~~~~~~~~~~~s~~~-~p~~s~~~~~q~~~~~ps~~~q~kgq~~ 2003 (2693)
-......-.-+..|.+|.|+.-+ ++ ...+..-+.++|+.---..+-++ ||.|+..+...-..|-++.+.++.-+-.
T Consensus 2823 ~Pa~~~PPPp~~~P~aP~pP~~p~~P~~~~~g~~~~~~~~~r~pP~~sp~~~ppaP~~PP~~~l~~P~~~~~t~s~alP~ 2902 (3151)
T PHA03247 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred ccccCCCCCCCCCCccccCCCCcc
Q 000047 2004 KTQSGGVTPRRRGKRQALGSPPIS 2027 (2693)
Q Consensus 2004 k~q~g~~~prrrgkkq~~~~p~~p 2027 (2693)
-...-.++|-..=.++-+..+|.|
T Consensus 2903 ~~~~~p~~Pp~p~Pp~P~p~~p~~ 2926 (3151)
T PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPP 2926 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.69 Score=63.88 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcE
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkV 1168 (2693)
.|-.-|++|+-..+.. .+..-|+.+ .|+|||-+...+|.-|...+ +.+|+.+=+ +.+.|..-.+..+.- .
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 5778899998665542 334446666 89999988888887776543 347777765 557777666655431 1
Q ss_pred EEEcCChHHHHHHHHh---------------hhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc
Q 000047 1169 IVYCGPPEERRRLFKE---------------KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke---------------~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI 1226 (2693)
++-.|....-....++ ........||.+|---+ ....|...+|||+|||||-.|
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEEEEcccccc
Confidence 2333433221111111 11234455666655433 234577778999999999876
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.59 Score=57.83 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+.++..+..++. ..+|..+.|+|||..+.+++.++..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445666666555554 6789999999999999888877653
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.2 Score=49.95 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc--cCEEEEecCCC-Ccc
Q 000047 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--ADTVIIFDTDW-NPQ 1511 (2693)
Q Consensus 1460 TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa--ADtVIiyDppW-NP~ 1511 (2693)
.+..+...+++.|.+...+ .+|+++....||||+.. +..||+.-.|+ ||.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4444678999999764322 47888877999999986 78999999776 343
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.2 Score=60.83 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. . .|+..+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 6666666666665543 2 4789999999999998888887654
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.8 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+...|...+.++......+.|.+|....|+|||..+.++...+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 3445666665554344567889999999999999999998877654
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.1 Score=50.38 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecc--cccccCccc--cCEEEEecCCC
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRA--GGVGVNLQA--ADTVIIFDTDW 1508 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrA--GGeGLNLQa--ADtVIiyDppW 1508 (2693)
.+..+++++|++.....-.+|+++.- ..|||||.. +..||+.-.|+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 35578999997643211236666665 899999987 78999998886
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.81 E-value=12 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=17.4
Q ss_pred cCCCccccccccccccCCCCcCCCCC
Q 000047 430 NSVPGTAMLRTMASRDTGKSSVSQTP 455 (2693)
Q Consensus 430 ~~~~~~~~~~~~~~~~~g~s~~~q~~ 455 (2693)
++.+-+..|-...|+.++.++|+...
T Consensus 113 Gsls~~qpL~~a~p~~m~~s~v~~~P 138 (1118)
T KOG1029|consen 113 GSLSYSQPLPPAAPRRMSSSPVVGPP 138 (1118)
T ss_pred CCcCcCCCCCcccccccCCCccCCCC
Confidence 34445666667788888888776644
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.9 Score=55.55 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
....|+. .+.|.+|....|+|||..+.++...+...
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3445664 46788999999999999999998877653
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.7 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.056 Sum_probs=22.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+.+.+|..+.|+|||..+.++..++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456688999999999999888776653
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=16 Score=50.09 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
.+|....|+|||..+.++..++....... .++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~-~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGT-RVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 57889999999999888888776532222 24444433333333322211 0
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhc-ccccccccccC
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lk-a~~RLLLTGTP 1252 (2693)
.++.|.+ .+. .+++||||+.|.+.+... .++..+..+. ....|+||+.-
T Consensus 367 -----~~~~f~~-----~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 367 -----KGDSFRR-----RYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -----cHHHHHH-----Hhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0111211 111 368999999999976543 3444444433 34557777653
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.3 Score=58.35 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+..+. ..||....|+|||..+.+|+..|..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5566666655555443 3488999999999999888877654
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=88.29 E-value=3.7 Score=50.23 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=31.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
+.||....|+|||..+.+++.++...+ ..++++ .+..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHH
Confidence 568999999999999999999887542 335555 3456666554
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.4 Score=54.23 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..+...+..+. +. ||..+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 7777777766665542 33 7999999999999988887765
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=3.7 Score=50.64 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~ 1153 (2693)
+.+.+|..++|+|||..+.+++.+++.. ..+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH
Confidence 3457899999999999999999888764 24455554333333
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.49 E-value=2.6 Score=53.39 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=40.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
..++|+|......+...+.+++ .-++....|+||+..|.+|+..++...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 3689999999999888776654 347889999999999999999887643
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.72 Score=57.23 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEe
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVV 1147 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVV 1147 (2693)
+.+.+|..+.|+|||..|-++...+...+.. .++++.|.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 3456889999999999998887776554332 23444444
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.7 Score=59.27 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. .. |+...-|+|||-.+..|+..|...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6677777777666553 23 789999999999999888887653
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.98 E-value=1.3 Score=60.42 Aligned_cols=41 Identities=24% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. ..||....|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5555555655555543 3389999999999999888877653
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=2 Score=58.20 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. +. |+....|+|||-.+.+|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 6677777766655542 23 789999999999999888877643
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.5 Score=56.53 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. + -|+....|+|||-.|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666667766665432 2 3789999999999998888877543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.83 E-value=2.2 Score=54.13 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.++|+|....+-++..-+-...-++..+.|+|||..|..++..++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 368999998888876411122346789999999999999999887643
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.2 Score=56.89 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=35.0
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHH-hh-cCC-CeE-EEcCCCCChHHHHHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSL-YN-NQL-NGI-LADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsL-y~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1135 (2693)
..|..|. -|+-|++-|..++.- +. ... ++| |...+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4455543 588888887655543 32 222 333 8999999999999888877654
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=86.66 E-value=0.72 Score=57.05 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEe
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVV 1147 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVV 1147 (2693)
+.+.+|..+.|+|||..|.++...+...+.. .++++.|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3467888999999999998887776554332 23444444
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.7 Score=57.92 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCCe---EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1095 QMSGLRWLVSLYNNQLNG---ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnG---ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|...+..|......+.-+ |+..+.|+|||..+.+|+..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 666666666655555433 8999999999999998888876543
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=2.4 Score=57.03 Aligned_cols=41 Identities=27% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLN---GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln---GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+..+.. -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55666666666555432 478999999999999888887764
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=86.42 E-value=3.5 Score=57.55 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
+..|-+-|++++..++. .+.-.+|....|+|||.+.-+++..+. .. ...+++++|+.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~-~~--g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWE-AA--GYRVIGAALSGKAAE 410 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHH-hC--CCeEEEEeCcHHHHH
Confidence 45788999999987753 234568899999999988766654443 22 345788899876543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.6 Score=54.62 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1094 YQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+|...|+-|...... ..+-++..+.|+|||-++++|...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 588888877665444 345578899999999999999988864
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.3 Score=58.53 Aligned_cols=23 Identities=35% Similarity=0.228 Sum_probs=19.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.||..+.|+|||..|-+++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999988877664
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=86.03 E-value=0.43 Score=54.47 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.1
Q ss_pred cCCccEEEEcHHHHHhccCCCccc--ccCccEEEEcccccccc
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~L~--kikWd~VIIDEAHRIKN 1228 (2693)
....+|||++|.+|....-+..+. ..+-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 356899999999998643332332 23457899999999854
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=85.98 E-value=2 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=26.8
Q ss_pred CccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
+-.+|||||+|++.+....+...+... ...++++||.-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchH
Confidence 568899999999976544333333322 3568999998643
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=9.2 Score=51.68 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=74.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHH---CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFW---AP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKw---aP 1164 (2693)
..|+|||...+.+|.. ++-.++.-.=..|||..+.+++.++..... ..-+++++|..-... -.+.++.. .|
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 5799999998887632 223356666789999998877766554333 234778888533221 11233222 22
Q ss_pred CCcEEEEcCChHHHHHHHHhhhh-cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH-hhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIV-HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~-~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka 1242 (2693)
.+........ .+ ..+. ..+..|.+.|- +.........+++||||+|.+++.. .++.++. .+..
T Consensus 133 ~l~~~~i~~~--~~-----~~I~l~NGS~I~~lss-------~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~las 197 (534)
T PHA02533 133 DFLQPGIVEW--NK-----GSIELENGSKIGAYAS-------SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISS 197 (534)
T ss_pred HHhhcceeec--Cc-----cEEEeCCCCEEEEEeC-------CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHc
Confidence 2110000000 00 0010 11222212111 1123455567899999999987743 3333333 2322
Q ss_pred --cccccccccCC
Q 000047 1243 --SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 --~~RLLLTGTPL 1253 (2693)
..++++..||-
T Consensus 198 g~~~r~iiiSTp~ 210 (534)
T PHA02533 198 GRSSKIIITSTPN 210 (534)
T ss_pred CCCceEEEEECCC
Confidence 24678888884
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=3.4 Score=51.15 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=25.2
Q ss_pred CccEEEEcccccccccc--chHHHHHHhhcccccccccccCC
Q 000047 1214 QWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~RLLLTGTPL 1253 (2693)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35799999999983222 22333344455666788887653
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=85.29 E-value=5.6 Score=52.20 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.6
Q ss_pred CccEEEEccccccccccchHHHHHHhh------cccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHY------QSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~L------ka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
.+++||||-+-+..... .....|..+ .....|+|++|.-.+.+.++|..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 57999999987643322 222222222 22446889999988888888887776644
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.27 E-value=31 Score=47.46 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=6.3
Q ss_pred ccCcc-cccccCCC
Q 000047 1889 RRGKK-IGLVLPAA 1901 (2693)
Q Consensus 1889 ~~~~~-~~~~~~~~ 1901 (2693)
+|||| |.+-.|+.
T Consensus 1021 arGkkrq~GWFPa~ 1034 (1118)
T KOG1029|consen 1021 ARGKKRQIGWFPAE 1034 (1118)
T ss_pred hcCCccccccccHH
Confidence 45555 54444443
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.92 E-value=2.8 Score=56.03 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. ..||..+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 6666666665544443 56899999999999998888777543
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=3.5 Score=56.43 Aligned_cols=42 Identities=19% Similarity=0.000 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. .-|+..+.|+|||..|.+++..|...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 6666666666665553 33889999999999999999888653
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=84.73 E-value=3.8 Score=51.63 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHh-hc--CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1091 LREYQMSGLRWLVSLY-NN--QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy-~n--~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
=|+.|++.|...+.-. .. ..+.+|..+.|+|||..+-.++..+.+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3777877665444332 22 2467889999999999988888776543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=84.62 E-value=2.8 Score=49.46 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=68.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChH-HHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPE-ERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~-eRk~l~ke~i~~~kf 1191 (2693)
+|.-.+|.|||-++.-+++++... .. .+.+|+--.--.--.++++.|+-.+.+-+|.-... .-..+...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~~-~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~------- 74 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--GK-KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIARE------- 74 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHH-------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--cc-cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHH-------
Confidence 678899999999998888888655 33 35555543333333455555553333333322110 00011100
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhh-cccccccccccCCCCCHHHHHHHhhhc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFL 1267 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~L-ka~~RLLLTGTPLQNnLeELwSLLnFL 1267 (2693)
.+ ..+...++|+|+||-+-+.-+... .+...+... .....|.|++|--+..+.++......+
T Consensus 75 --------~l------~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 75 --------AL------EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp --------HH------HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred --------HH------HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 00 112334579999999977643322 222222333 334557788888666666555554444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.61 E-value=5.7 Score=48.87 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|.+.+..+..+..++ .+.+|..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444444443333 2478999999999998877776653
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=84.24 E-value=1.4 Score=53.23 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-+.+=+++.++..+. +=+.+|||..++.+-..-+...+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 467999999999999863 45678899999999999988766666654332 34689999999988776665443
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.23 E-value=1.7 Score=56.30 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC------------CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL------------NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l------------nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|..++..|...+..+. .-|+....|+|||..+.+++..++..
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 6666666665555432 24688999999999999988877654
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=4.3 Score=54.12 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcC---CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ---LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~---lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+ ..-|+....|+|||-.|..++..+...
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 555555555554443 345899999999999988777766543
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=3.7 Score=49.50 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1096 leGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..++.++..+.. .....+|..+.|+|||-.+.++..++..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334555544322 2245689999999999888777766653
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.99 E-value=3.5 Score=55.47 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCC--e-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQLN--G-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln--G-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++.- . |+..+.|+|||-.+.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 55555555555544432 2 789999999999998888887643
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=83.94 E-value=6.4 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+|....|+|||-.+.++...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999999888888776543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.87 E-value=5.6 Score=52.31 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcC----CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1094 YQMSGLRWLVSLYNNQ----LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~----lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
....++.++..+..+. ...+|..+.|+|||..+-++..++...
T Consensus 129 ~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 129 SNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred CcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3444555555543321 235789999999999998888877654
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=3.2 Score=56.36 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCCe---EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLNG---ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnG---ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+.+|...+.++.-+ ||..+.|+|||..+..++.++..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 777777777766655333 78999999999999988877753
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.67 E-value=3.6 Score=56.04 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. .-||....|+|||..+..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 5555555655555443 35888999999999999888887654
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=83.64 E-value=8 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+|....|+|||..+.++..++.+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4789999999999998888877654
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=83.59 E-value=3.3 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHH
Q 000047 1093 EYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~ 1132 (2693)
+.+..++..+......+. ..+|..+.|+|||..+-.++..
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 344556666655444443 4678999999999877655443
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=4.9 Score=57.53 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|-+-|.++|..++. .+.-.+|.-.-|+|||.+. ..+..+++.. ...+++++|+.....-..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc----
Confidence 45799999999987764 2234678889999999874 4444444432 2347888888765432221 10
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRL 1246 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~RL 1246 (2693)
|.... |...+..............++||||||-.+-.. .+.+.|... ....+|
T Consensus 411 -----Gi~a~-------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIASR-------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccchh-------------------hHHHHHhhhcccccccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEE
Confidence 10000 011110000011112235689999999977432 233444433 456789
Q ss_pred cccccCCC
Q 000047 1247 LLTGTPLQ 1254 (2693)
Q Consensus 1247 LLTGTPLQ 1254 (2693)
+|.|=|-|
T Consensus 465 VLVGD~~Q 472 (988)
T PRK13889 465 VLVGDPQQ 472 (988)
T ss_pred EEECCHHH
Confidence 99887744
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.29 E-value=3.2 Score=53.38 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|.++...+...+.+++ .-|+....|+||+..+.+|+.+++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 7777777777766653 347889999999999999999998654
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=4.1 Score=54.77 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..+...+.++. .. |+..+.|+|||..|-.|+..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666666666555432 33 79999999999999888877754
|
|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.99 E-value=1e+02 Score=42.43 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=14.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH
Q 000047 983 INDVEGYLRMVQDAKSDRVNKLLKET 1008 (2693)
Q Consensus 983 ~~DeE~Y~~ll~e~K~~rL~~LL~QT 1008 (2693)
..+.|+.++.+.+....++..+-.++
T Consensus 933 qq~le~~lkrm~~~~k~ema~iErec 958 (1187)
T KOG0579|consen 933 QQNLEAMLKRMAEKHKEEMASIEREC 958 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34456666666655555555554443
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=82.93 E-value=9.5 Score=53.05 Aligned_cols=138 Identities=16% Similarity=0.084 Sum_probs=72.2
Q ss_pred HHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCC-CEEEEe-cCchHHH-----HHHHHHHHCCCCcEEEEcCCh
Q 000047 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG-PFLVVV-PSSVLPG-----WESEINFWAPRIHKIVYCGPP 1175 (2693)
Q Consensus 1103 lsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~g-P~LIVV-PtSLL~Q-----W~eEfeKwaPsLkVIvy~Gs~ 1175 (2693)
+.+...+.-.|+--++|+|||.|...+|+.-+....... .-.+|| |.....+ ..+|=..-.. .++.|.
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g--~tvgy~--- 461 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG--ETCGYN--- 461 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc--cccccc---
Confidence 344455677788899999999998877765444332221 112333 3333333 2222111110 111111
Q ss_pred HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh----ccccccccccc
Q 000047 1176 EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY----QSSHRLLLTGT 1251 (2693)
Q Consensus 1176 ~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L----ka~~RLLLTGT 1251 (2693)
-.+ ........--++.+|.+.+.+.... ......++|+||.|..--..--+...++.+ +.-+.+|+++|
T Consensus 462 vRf----~Sa~prpyg~i~fctvgvllr~~e~---glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 462 VRF----DSATPRPYGSIMFCTVGVLLRMMEN---GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred ccc----cccccccccceeeeccchhhhhhhh---cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 111 0111112234667888877765432 334567899999998755444455555544 34455788888
Q ss_pred C
Q 000047 1252 P 1252 (2693)
Q Consensus 1252 P 1252 (2693)
=
T Consensus 535 I 535 (1282)
T KOG0921|consen 535 I 535 (1282)
T ss_pred c
Confidence 5
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=82.80 E-value=1 Score=60.69 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=96.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHH-HHHHHH---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWE-SEINFW---A 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~-eEfeKw---a 1163 (2693)
....|||.+-+..|..-. -....+.-..-+|||.+.+.++.|.+.. ..+|+|+|.|+.-. ..|. ..|... .
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478899999887665311 2345677778899999888888887654 45789999998554 5564 344433 3
Q ss_pred CCCcEEEEcC-ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc----cccchHHH---
Q 000047 1164 PRIHKIVYCG-PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK----NASCKLNA--- 1235 (2693)
Q Consensus 1164 PsLkVIvy~G-s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK----N~sSKlsr--- 1235 (2693)
|.++-.+... .......+....+ .+-.+.+.... ....|.....++||+||..++- +.......
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f--~gg~l~~~ga~------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF--PGGFLYLVGAN------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec--CCCEEEEEeCC------CCcccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 4333222210 0001111111111 12223333322 2345777889999999999983 23333333
Q ss_pred HHHhhcccccccccccCCCCCHHHHHHHh
Q 000047 1236 DLKHYQSSHRLLLTGTPLQNNLEELWALL 1264 (2693)
Q Consensus 1236 aLk~Lka~~RLLLTGTPLQNnLeELwSLL 1264 (2693)
....|....++++..||.......++.++
T Consensus 163 R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 163 RTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 33455567889999999877555555544
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.21 E-value=2.3 Score=52.24 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=60.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
-+|..+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588899999999999999998875543322111111 222222233444433222221111 0
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhhccccccccccc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGT 1251 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~Lka~~RLLLTGT 1251 (2693)
++++.-+..+..... ..-....|.+||||||+.|.- ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~-~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLS-ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhc-cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 011111111111100 011135799999999999954 22233344444566667777654
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=82.20 E-value=7.5 Score=52.14 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=73.8
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+||.+....++......|.++||.+.....+..+.+.|.. .|..+..++|.++..+|.+...+...++.+ |+|.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 458999998888888888899999999999988888877764 477899999999999998887777666554 5777
Q ss_pred ecccccccCccccCEEEEec
Q 000047 1486 IRAGGVGVNLQAADTVIIFD 1505 (2693)
Q Consensus 1486 TrAGGeGLNLQaADtVIiyD 1505 (2693)
|+.+= =+-+...+.||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 76532 24466677777655
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=4.8 Score=54.72 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|.....++. .. |+..+-|+|||..+..|+.++...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 5555566655544442 33 788999999999999888887643
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=81.95 E-value=4.1 Score=41.42 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh-cCCCCCEEEEecCchHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET-KNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~-k~~~gP~LIVVPtSLL~Q 1154 (2693)
.-.++-...|+|||.+++.++.+++.. ......+||++|+....+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 335668899999999999999998853 122557999999866544
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=28 Score=47.22 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+...+|...+|.|||..+..|+.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4445677889999999988887766554
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=81.27 E-value=17 Score=48.15 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred ccHHHHHHH-HHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1409 CGKLEMLDR-LLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1409 SgKLelLde-LL~kLk--atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+++.+.+ +|+.+. ....++|||...=-..-.|..+|...++.|+.++--++..+-.++-..|-.+..+ ++|++
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 346776665 777776 3457899998765555568899999999999999999999999999999877654 56666
Q ss_pred ecccc-cccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1486 IRAGG-VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1486 TrAGG-eGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
-++.= .=..|..+.+||+|.+|-+|.-|..-+.-...-
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~ 396 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDES 396 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccc
Confidence 44432 234467799999999999999998877655443
|
; GO: 0005634 nucleus |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.24 E-value=2e+02 Score=40.28 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=28.8
Q ss_pred CcChhhHhhHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 000047 845 SEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFK 880 (2693)
Q Consensus 845 ~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~vl~~~~~ 880 (2693)
..+.-.|+|-.|-|++=..+..|+-.|.-+....++
T Consensus 798 ~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 798 GALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred hhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334456899999999999999999999987765443
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=6 Score=48.86 Aligned_cols=28 Identities=29% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+.+.+|..++|+|||..+.+++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567899999999999999998888754
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=7.9 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
....||..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999998887666543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=5.4 Score=54.55 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. .-|+..+.|+|||..|..|+..+..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4445555555554442 3467999999999999988887764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=23 Score=49.27 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHH----HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM----EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDIL----ed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||.....-.+-.....|.++||.+.....+..+ ..+|...|+++..++|+++..+|.++++....++.+ +|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 46777654443333345688999999988776554 455555689999999999999999999999777665 56
Q ss_pred eeecc-cccccCccccCEEEE
Q 000047 1484 LSIRA-GGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrA-GGeGLNLQaADtVIi 1503 (2693)
+.|.+ ....+.+.....||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 66653 444567778887776
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=80.73 E-value=7.6 Score=49.60 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHH-HHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1092 REYQMSGLRWLV-SLYN--NQLNGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1092 RPYQleGL~WLl-sLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|+-+++-+.-.+ .... ...+.+|....|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 555555544333 2222 235678999999999999888877765443
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.56 E-value=4.6 Score=51.33 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.++|+|......+...+.+++ .+ |+..+.|+||+..|.+++.+++...
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888888888888877653 33 6789999999999999999888654
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.31 E-value=2.6 Score=51.04 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+-.+-|++...|+|||-.+.+++..|+.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3456799999999999999988888764
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=80.09 E-value=10 Score=52.56 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+||......++......|.++||.+.....+..+.+.|.. .|..+..++|+++..+|.+...+...++.+ |+|.
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 347899888887777777789999999999988888877764 478899999999999998888887666655 6777
Q ss_pred ecccccccCccccCEEEEecC
Q 000047 1486 IRAGGVGVNLQAADTVIIFDT 1506 (2693)
Q Consensus 1486 TrAGGeGLNLQaADtVIiyDp 1506 (2693)
|+..- =+.+.+...||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 77432 255667777777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2693 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 1e-91 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 2e-43 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 7e-43 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 4e-41 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 1e-16 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 798 bits (2064), Expect = 0.0
Identities = 244/763 (31%), Positives = 372/763 (48%), Gaps = 66/763 (8%)
Query: 899 RRIKQLEKFEQKMKEERQKRIRERQKEFF------SEIEAH---KERLDEVFKIKRERWR 949
R LE+ + K + EF S + E + +V +KR
Sbjct: 47 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKR---- 102
Query: 950 GVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETE 1009
++ Y K+F +++ + + E I ++ + + +R+ + +
Sbjct: 103 -LDNYCKQFIIEDQQVRLDP--YVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASL 159
Query: 1010 KYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYY 1069
+ L + + + + T +V+ V+ ++ + L Y
Sbjct: 160 EDGTSQLQYLVKWRRLNYDEATWENATD---IVKLAPEQVK-HFQNRENSKILPQYSSNY 215
Query: 1070 LMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIAL 1129
E +S QP ++GG+LR++Q++G+ W+ L++ NGILADEMGLGKTVQ +A
Sbjct: 216 TSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAF 275
Query: 1130 ICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ 1189
I +L+ + GP ++VVP S +P W WAP ++ I Y G + R + + +
Sbjct: 276 ISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTN 335
Query: 1190 ---------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
KFNVLLTTYEY++ DR +L I+W ++ +DE HR+KNA L L +
Sbjct: 336 PRAKGKKTMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSF 393
Query: 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300
+ ++R+L+TGTPLQNN++EL AL+NFL+P F ++
Sbjct: 394 KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ----------------- 436
Query: 1301 EEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN--- 1357
+EE I+ LH+ ++PF+LRRLK VE LP K ER++R E S Q K +
Sbjct: 437 DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYS 496
Query: 1358 -LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT------LIPKHYLPPIVRLCG 1410
L + S+ N + EL+ NHPYL E V + ++ L ++ G
Sbjct: 497 ALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSG 556
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
K+ +LD+LL +LK HRVL FS M R+LD++ DYL+ K + RLDG R ID
Sbjct: 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
FN DS F+FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V+
Sbjct: 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVM 676
Query: 1531 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA---EDRREYLESLLRE---- 1583
V R + TVEE+V A K+ + I+ G D N E L ++L+
Sbjct: 677 VYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGN 736
Query: 1584 -CKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMA 1625
+ L+D L+D+L +E + + + EE
Sbjct: 737 MFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFL 779
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 634 bits (1638), Expect = 0.0
Identities = 163/619 (26%), Positives = 274/619 (44%), Gaps = 62/619 (10%)
Query: 1046 EPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSL 1105
+ A+ + + H L +K K V + LR +Q G+++L
Sbjct: 18 DGALVLYEPPAISAHDLIKADKE-------KLPVHVVVDPVLSKVLRPHQREGVKFLWDC 70
Query: 1106 YN-----NQLNGILADEMGLGKTVQVIALICYLMETKNDRGP----FLVVVPSSVLPGWE 1156
N I+ADEMGLGKT+Q I LI L++ D P +VV PSS++ W
Sbjct: 71 VTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWY 130
Query: 1157 SEINFWAP-RIHKIVYCGPPEERR-----RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210
+E+ W R+ + G ++ ++ + +L+ +YE L
Sbjct: 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL--HAEVL 188
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPN 1270
K + +I DEGHR+KN+ + L + R+L++GTP+QN+L E ++L++F+
Sbjct: 189 HKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSG 248
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENE 1330
I ++++F + F P D D + + L ++ ++RR +
Sbjct: 249 ILGTAQEFKKRFEIPILKGRD--ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY 306
Query: 1331 LPEKIERLVRCEASA-----YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
LP KIE++V C + Y+ L + G S+ +S+ L+ +CNHP L
Sbjct: 307 LPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL-SSITSLKKLCNHPAL 365
Query: 1386 SQLHA-------EEVDTLIPKHYLPP--IVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTM 1435
+ L P++Y +L GK+ +LD +L + T +V+ S
Sbjct: 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY 425
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
T+ LD+ E ++Y Y+RLDG S R ++++FN SP FIF+LS +AGG G+NL
Sbjct: 426 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
A+ +++FD DWNP D QA AR R GQK+ + R + T+EE++ HK ++
Sbjct: 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALS 545
Query: 1556 NQSITAGFFDNNT-SAEDRREYLESLLRECKKEEAAPVLDDDAL---NDLL--ARSESEI 1609
+ + S + RE L L++ L +D R +
Sbjct: 546 SCVVDEEQDVERHFSLGELRE----LFS----------LNEKTLSDTHDRFRCRRCVNGR 591
Query: 1610 DVFESVDKQRREEEMATWR 1628
V D +++ W
Sbjct: 592 QVRPPPDDSDCTCDLSNWH 610
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 420 bits (1083), Expect = e-131
Identities = 142/511 (27%), Positives = 251/511 (49%), Gaps = 54/511 (10%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
+P ++ LR YQ+ G W+ + LAD+MGLGKT+Q IA+ + +N+
Sbjct: 29 LEPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENEL 86
Query: 1141 GPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
P LV+ P SVL WE E++ +AP + V+ + ++ ++++LTTY
Sbjct: 87 TPSLVICPLSVLKNWEEELSKFAPHLRFAVFHED--RSKIKLED------YDIILTTYAV 138
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL 1260
L+ L +++W YI+IDE IKN K+ +K +S +R+ LTGTP++N +++L
Sbjct: 139 LLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDL 195
Query: 1261 WALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320
W+++ FL P + S +F F P + + + + L ++ PF+L
Sbjct: 196 WSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKE--------------ELKAIISPFIL 241
Query: 1321 RRLK--HKVENELPEKIERLVRCEASAYQKLL----MKRVEENLGSIGNSKGR-SVHNSV 1373
RR K + N+LP+KIE V C + Q + ++ + N+ S+ K + + +++
Sbjct: 242 RRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTL 301
Query: 1374 MELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFS 1433
++L+ I +HP + L E VR GK+ ++ + ++ F+
Sbjct: 302 LKLKQIVDHP--ALLKGGE-----------QSVRRSGKMIRTMEIIEEALDEGDKIAIFT 348
Query: 1434 TMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492
+ ++ + + + L G S +R +I KF S +LS++AGG G
Sbjct: 349 QFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK-FIVLSVKAGGFG 407
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+NL +A+ VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K
Sbjct: 408 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467
Query: 1553 GVANQSITAG-FFDNNTSAEDRREYLESLLR 1582
+ I++G + S E+ L ++
Sbjct: 468 SLFKDIISSGDSWITELSTEE----LRKVIE 494
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 4e-83
Identities = 105/669 (15%), Positives = 223/669 (33%), Gaps = 52/669 (7%)
Query: 1029 FENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYL--MAHSIKESVSEQP-TC 1085
+ + + V V ++ + ++ +++ L A P +
Sbjct: 87 RLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSG 146
Query: 1086 LQGGK--LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
L+G + L +Q++ + + +LADE+GLGKT++ ++ + +
Sbjct: 147 LRGQRTSLIPHQLNIAHDVGRRHA--PRVLLADEVGLGKTIEAGMILHQQLLSG-AAERV 203
Query: 1144 LVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM- 1202
L++VP ++ W E+ + ++ + +++ + ++
Sbjct: 204 LIIVPETLQHQWLVEMLRRFN-LRFALFDDERYAEAQHDAYN-PFDTEQLVICSLDFARR 261
Query: 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-----YQSSHRLLLTGTPLQNNL 1257
+K L + +W +++DE H + + + + + LLLT TP Q +
Sbjct: 262 SKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGM 321
Query: 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNG--DNSPDEALLSEEENLLIINRLHQVL 1315
E +A L L PN F+ F + LS +E ++ + +
Sbjct: 322 ESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381
Query: 1316 RPFVLRRLKHKVENELPEKIERLVR-CEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVM 1374
+L+ E+ + E + + ++L + + R +H +
Sbjct: 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNT---RNGVKGFPKRELHTIKL 438
Query: 1375 EL----RNICNHPYLSQLH----AEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL---- 1422
L + + D L P+ D + L
Sbjct: 439 PLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYL 498
Query: 1423 -KATDHRVLFFSTMTRLLDVMEDYLTFKQ-YRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
+VL +E L ++ R S +R F ++D+
Sbjct: 499 TSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ 558
Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
LL G G N Q A +++FD +NP + Q R RIGQ D+ + +T
Sbjct: 559 -VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617
Query: 1541 EEQVRASAEHKLGVANQSITAGF---------FDNNTSAEDRREYLESLLRECKKEEAAP 1591
+ + L + G N ++ D+ E + L++ C+++ A
Sbjct: 618 QSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEAL 677
Query: 1592 VLDDDALNDLLARSESEID-----VFESVDKQRREEEMATW-RKLIRGLGTDGEPLPPLP 1645
+ D L S + ES+++Q + + + L +G + +
Sbjct: 678 KAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNM 737
Query: 1646 SRLVTDDDL 1654
L D +
Sbjct: 738 IVLTPSDHM 746
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 4e-61
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 21/259 (8%)
Query: 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLL----MKRVEENLGSIGNSK 1365
H ++ R + ++LP+KIE V C + Q + ++ + N+ S+ K
Sbjct: 5 HHHHHHSSGLVPR-GSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIK 63
Query: 1366 GR-SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA 1424
+ + +++++L+ I +HP + L E VR GK+ ++ +
Sbjct: 64 RKGMILSTLLKLKQIVDHP--ALLKGGE-----------QSVRRSGKMIRTMEIIEEALD 110
Query: 1425 TDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483
++ F+ + ++ + + + L G S +R +I KF S +
Sbjct: 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK-FIV 169
Query: 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543
LS++AGG G+NL +A+ VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE+
Sbjct: 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 229
Query: 1544 VRASAEHKLGVANQSITAG 1562
+ K + I++G
Sbjct: 230 IDQLLAFKRSLFKDIISSG 248
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 2e-56
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 28/232 (12%)
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRV-----------EENLGSIGNSKGRSVHNSVMELRN 1378
+ + S YQK L ++ E + S+ +
Sbjct: 19 SGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSL 78
Query: 1379 ICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL 1438
+ HPYL H +LI + + GK +L L+ ++ + R
Sbjct: 79 VATHPYLLIDHYMP-KSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRT 137
Query: 1439 LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL--- 1495
+D++E L + R DGH+ I + L G
Sbjct: 138 MDLLEALLLGNKVHIKRYDGHS--------IKSAAAANDFSCTVHLFSSEGINFTKYPIK 189
Query: 1496 --QAADTVIIFDTDWNPQV-DLQAQARAHRI--GQKRDVLVLRFETVQTVEE 1542
D +I DT + D+Q + R G +R ++R + +++
Sbjct: 190 SKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 76/500 (15%), Positives = 162/500 (32%), Gaps = 58/500 (11%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149
+ R YQ N ++ GLGKT+ + + Y + + L++ P+
Sbjct: 9 QPRIYQEVIYA--KCKETN---CLIVLPTGLGKTLIAMMIAEYRLTKYGGK--VLMLAPT 61
Query: 1150 SVLPG-WESEI--NFWAPRIHKIVYCG--PPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204
L F P + G PEER + + V++ T + + N
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA------KVIVATPQTIEND 115
Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHR----LLLTGTPLQNNLEEL 1260
++S I+ DE HR + Y+ + + LT +P + +
Sbjct: 116 LLAGRISLEDVSLIVFDEAHRAVGNYAY-VFIAREYKRQAKNPLVIGLTASPGSTPEKIM 174
Query: 1261 WALLNFLLPNIF---NSSEDFSQWFNK----------PFESNGDNSPDEALLSEEENLLI 1307
+ N + +I +S D + P +L + L
Sbjct: 175 EVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234
Query: 1308 INRLHQVLRP----FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGN 1363
L + P + R + E+ + L L + E L + G
Sbjct: 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGL 294
Query: 1364 SKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY--LPPIVRLCGKLEMLDRLLPK 1421
S R+ + E + ++ +++ I K++ L ++ +
Sbjct: 295 SALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIRE 354
Query: 1422 L--KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL--------IDK 1471
+ + +++ F+ + + L + R G S + L +D+
Sbjct: 355 QLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDE 414
Query: 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531
F + + L++ G G+++ D V+ ++ + +Q + R R R +++
Sbjct: 415 FARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIIL 471
Query: 1532 LRFETVQTVEEQVRASAEHK 1551
+ T +E S+ K
Sbjct: 472 M---AKGTRDEAYYWSSRQK 488
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 2e-18
Identities = 109/727 (14%), Positives = 214/727 (29%), Gaps = 228/727 (31%)
Query: 872 NDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKM--KEERQKRIRERQKEFFSE 929
D L+ F + D K ++ + + KEE I +
Sbjct: 19 KDILSVFEDAFVDNFD-------------CKDVQDMPKSILSKEEIDHIIMSKDAV---- 61
Query: 930 IEAHKERLDEVF-KIKRERWRGVNKYVKEFHKR-----KERIHREKIDRI--------QR 975
+F + ++ V K+V+E + I E+ QR
Sbjct: 62 -----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 976 EKINLLKINDVEGYLRM-VQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEM- 1033
+++ ND + + + V R+ LK L++ +L+ AK++ +
Sbjct: 117 DRLY----NDNQVFAKYNVS-----RLQPYLK-----LRQALLELRPAKNVLID---GVL 159
Query: 1034 ---------DETQTVSVVEKYEPAV-------ENEDESDQAKHYLESNEKYYLMAHSIKE 1077
D + V K + + N E+ LE +K + I
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----LEMLQKLL---YQIDP 211
Query: 1078 SVSEQPTCLQGGKLR-EYQMSGLRWLVSL--YNNQLNGILADEMGLGKTVQVIALICYLM 1134
+ + + KLR + LR L+ Y N L +L + K L C ++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VL-LNVQNAKAWNAFNLSCKIL 269
Query: 1135 ETKNDRG--PFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFN 1192
T + FL ++ + + P+E + L K + +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTL------------TPDEVKSLL-LKYLDCRPQ 316
Query: 1193 VL----LTTYEYLMN-----KHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243
L LTT ++ D W ++ D+ I +S LN
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESS--LNV-------- 365
Query: 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQ------WFNKPFESNGDNSPDEA 1297
L + + L ++F S WF+
Sbjct: 366 ----LEPAEYRKMFDRL---------SVFPPSAHIPTILLSLIWFDVIKSD------VMV 406
Query: 1298 LLSEEENLLIINR--------LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKL 1349
++++ ++ + + + LK K+ENE +V Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPS-----IYLELKVKLENE-YALHRSIVDH----YN-- 454
Query: 1350 LMKRVEENLGSIGNSKGRSVHNSVMELRN-ICNH-PY-LSQLHAEEVDTLIPKHYLPPIV 1406
+ K + + L +H + L + E TL +L
Sbjct: 455 IPKTFDSD------------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---- 498
Query: 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDR 1465
L++ K++ ++ +L+ ++ K Y+ Y+ +
Sbjct: 499 ----DFRFLEQ---KIRHDS---TAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLV 545
Query: 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNL-QAADTVIIFDTDWNPQVDLQAQ-----AR 1519
A++D FL I NL + T ++ ++ L A+
Sbjct: 546 NAILD-----------FLPKI-----EENLICSKYTDLL-------RIALMAEDEAIFEE 582
Query: 1520 AHRIGQK 1526
AH+ Q+
Sbjct: 583 AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 3e-16
Identities = 94/700 (13%), Positives = 217/700 (31%), Gaps = 202/700 (28%)
Query: 397 ETSAM-LSSGKVLEH-------DGSSNTLSDANRAVQ--------VGRQNSVPGTAMLRT 440
ET +L + + D +++ + +++V GT L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 441 MASRDTGKSSVSQTPVFSGMPFKEQQLK--------QLRAQCL-------VFLAFRNGLV 485
+ V + F E+ L+ ++ + +++ R+
Sbjct: 70 TL-LSKQEEMVQK--------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--- 117
Query: 486 PKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLG------ 539
+L+ + +F + NV SR + ++ A V G LG
Sbjct: 118 --RLYND---NQVFAK--YNV--SRLQPYLKLRQALLEL-RPAKNVLI-DGVLGSGKTWV 166
Query: 540 -----NARETDRIPPGGS---SSGGFLEADSSSKEVENL--KMMDKSGPPADHSIHAEER 589
+ + + ++ + ++ L ++ +DHS + + R
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 590 KQLATGKLEAEMQSQETAES-------------QAFFTSASQQLESASTRGTLAITNPVN 636
+L ++S+ AF + + L +TR +T+ ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKIL--LTTRFK-QVTDFLS 282
Query: 637 DVENGHLFIGRANVASVTGINKPMNSEI-NSWTGIGSQNEVPRRPLPAPTVQHELVKDND 695
H+ + + + + Q+ LP E++ N
Sbjct: 283 AATTTHISL----DHHSMTLTPDEVKSLLLKYLDCRPQD------LP-----REVLTTN- 326
Query: 696 PTQFKSFGHSGASGNQHANSHLSSFSIR-DQWKPVSGTDSDRYSLIPVKDASGMLRHTSQ 754
P + S + D WK V + D+ + I ++S L
Sbjct: 327 PRRLSIIAES-----------IRDGLATWDNWKHV---NCDKLTTI--IESS--LNVLEP 368
Query: 755 DDPK--------FSDGSRTIPVDNSVRNGISL----TTEQDEEDKSLHTDSPPAPKYTMS 802
+ + F + IP + +SL + D
Sbjct: 369 AEYRKMFDRLSVFPPSAH-IPTI--L---LSLIWFDVIKSDVMV---------------- 406
Query: 803 EKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQ 862
+++ + LVE+ +++ + + + +LK + E+ A +S+++
Sbjct: 407 ---VVNKLHKYSLVEKQP----KESTISIPSIYLELKVKL---ENEYALHRSIVD----- 451
Query: 863 LLGLQRRLRNDFLNDFFKPITTDMDRLKSY-KKH--RHGRRIKQLEK---FEQKMKEER- 915
+ F +D P D Y H H + I+ E+ F + R
Sbjct: 452 ----HYNIPKTFDSDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 916 -QKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQ 974
+++IR + A L+ + ++K + Y+ + + ER+ +D +
Sbjct: 503 LEQKIRHDS----TAWNASGSILNTLQQLKFYK-----PYICDNDPKYERLVNAILDFLP 553
Query: 975 REKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQK 1014
+ + NL+ Y +++ A + +E K +Q+
Sbjct: 554 KIEENLIC----SKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 5e-14
Identities = 84/593 (14%), Positives = 162/593 (27%), Gaps = 156/593 (26%)
Query: 774 NGISLTTEQDEEDKS-LHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTK---- 828
S+ T E + L+ D+ KY +S + + L + +L+ + K
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-------RLQPYLKLRQALLELRPAKNVLI 155
Query: 829 QRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDR 888
+ K+ + D + + MD
Sbjct: 156 DGVLGS-----------------GKTW--------------VALDVCLSY--KVQCKMDF 182
Query: 889 ----LKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIK 944
L + ++ L+K ++ R + I + + L + K K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSK 241
Query: 945 RER---------WRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQD 995
K F+ KI R K ++ D
Sbjct: 242 PYENCLLVLLNVQN--AKAWNAFN------LSCKILLTTRFK----QVTDFLSAATTTHI 289
Query: 996 AKSDRVNKLLK-ETEKYLQK-LGSKLQEAKSMASHFENEMDET--QTVSVVEKYEPAVEN 1051
+ L E + L K L + Q+ E+ T + +S++ A
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------EVLTTNPRRLSII-----AESI 337
Query: 1052 EDESDQAKHYLESN-EKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQL 1110
D ++ N +K + I+ S++ L+ + R+ + ++L
Sbjct: 338 RDGLATWDNWKHVNCDK---LTTIIESSLN----VLEPAEYRKM-----------F-DRL 378
Query: 1111 NGILADEMGLGKTVQV-IALICYLMETKNDRGPFLVV---VPSSVLPGWESEINFWAPRI 1166
+ + L+ + +VV S++ E I
Sbjct: 379 -SVFPPS------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SI 428
Query: 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQW-----HYIIID 1221
I Y E + +L E +H+ ++ Y + D L +I
Sbjct: 429 PSI-YL---ELKVKLENEYALHRS---IVDHYN-IPKTFDSDDLIPPYLDQYFYSHI--- 477
Query: 1222 EGHRIKNASCKLNADL--KHYQS----SHRLLLTGTPLQ--NNLEELWALLNFLLPNIFN 1273
GH +KN L + ++ T ++ L F P I +
Sbjct: 478 -GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 1274 SSEDFSQW------FNKPFESNGDNSPDEAL----LSEEENLLIINRLHQVLR 1316
+ + + F E N S L L E+ + QV R
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-11
Identities = 71/575 (12%), Positives = 153/575 (26%), Gaps = 215/575 (37%)
Query: 1209 KLSKIQWHY--IIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ------NNLEEL 1260
+ + Q+ Y I+ + N D K Q + +L+ + + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 1261 WALLNFLLPNIFNSSEDFSQ--------WFNKPF-ESNGDNSPDEALLSEEENLLIINRL 1311
L LL + F + + P S + E+ +RL
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-----RDRL 119
Query: 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK-RVEENL---GSIGNSKGR 1367
+ + F K+ V + +L ++ L++ R +N+ G +G+ K
Sbjct: 120 YNDNQVFA----KYNVSR--LQPYLKL--------RQALLELRPAKNVLIDGVLGSGK-- 163
Query: 1368 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPK--HYLPPIVRLCGK----LEMLDRLLPK 1421
+ + L ++C + +V + +L ++ C LEML +LL +
Sbjct: 164 ----TWVAL-DVCL--------SYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQ 208
Query: 1422 LKATDHRVLFFSTMTRL-LDVMEDYLT--FKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478
+ S+ +L + ++ L K Y L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----------CLL--------- 248
Query: 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV----DLQAQARAHRIGQKRDVLVL-R 1533
+ N + +L + +L+ R
Sbjct: 249 ------------------------VLLNVQNAKAWNAFNLSCK-----------ILLTTR 273
Query: 1534 FETVQTV---EEQVRASAEHKLGVANQSITAGFFDN--NTSAEDRREYLESLLRECKKEE 1588
F+ V S +H + +D L RE
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------LPREVLT-- 324
Query: 1589 AAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWR-----KLIRGLGTDGEPLPP 1643
P L+ ++A S + + W+ KL + + L P
Sbjct: 325 TNPR----RLS-IIAESIRD-------GLATWD----NWKHVNCDKLTTIIESSLNVLEP 368
Query: 1644 LPSRLVTDDDLKALYEAMKIY--DAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREV 1701
+ + +++ + ++ A + + L +
Sbjct: 369 --------AEYRKMFDRLSVFPPSAH---IPTIL--------LSLI-------------- 395
Query: 1702 RSYEEQWTEEEFEKMCQAESSDSPKLKEEGLEKSL 1736
W + D + + + SL
Sbjct: 396 ------WFDVIKS--------DVMVVVNKLHKYSL 416
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-09
Identities = 75/511 (14%), Positives = 138/511 (27%), Gaps = 161/511 (31%)
Query: 1276 EDFSQWFNKPFESNGDNSPDE--ALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPE 1333
F F F+ + D ++LS+EE II V RL
Sbjct: 23 SVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSG---TLRL---------- 67
Query: 1334 KIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL-SQLHAEE 1392
L+ + QK VEE L N+ +L S + E+
Sbjct: 68 -FWTLLSKQEEMVQKF----VEEVLRI--------------------NYKFLMSPIKTEQ 102
Query: 1393 VD-TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY 1451
+++ + Y+ RL +++ K + R+ + + + L L +
Sbjct: 103 RQPSMMTRMYIEQRDRLYND----NQVFAKYNVS--RLQPYLKLRQAL------LELRPA 150
Query: 1452 RYLRLDGHTSGGDRG-------ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504
+ + +DG G G + Q F IF L+++ N + +TV+
Sbjct: 151 KNVLIDG--VLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLK------NCNSPETVLE- 200
Query: 1505 DTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFF 1564
Q ++I ++
Sbjct: 201 ----------MLQKLLYQIDPNWTSRSDHSSNIKL------------------------- 225
Query: 1565 DNNTSAEDRREYLESLLRECKKEEAAPVLDD-------DALND-----LLARSESEIDVF 1612
+ L LL+ E VL + +A N L R + D
Sbjct: 226 ----RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 1613 ESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPK--TG 1670
+ + + L T E L Y + D P+
Sbjct: 282 SAATTTHISLDHHSM-----TL-TPDEVK-----------SLLLKYLDCRPQDLPREVLT 324
Query: 1671 VSP---NVGVKRKGEHLGALDT-QHYGRGKRAREVRSYEEQWTEEEFEKMCQA-----ES 1721
+P ++ + + L D +H K + S E+ KM S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 1722 SDSP---------KLKEEGLEKSLPTVVSSS 1743
+ P + + + + + S
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-13
Identities = 67/458 (14%), Positives = 138/458 (30%), Gaps = 95/458 (20%)
Query: 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEM--GLGKTVQVIALICYLMETKNDRGPFLVV 1146
LR+YQ L + + G + + G GKT +A I L P L+V
Sbjct: 92 ISLRDYQEKALERWLV--DK--RGCI--VLPTGSGKTHVAMAAINEL------STPTLIV 139
Query: 1147 VPSSVLPG-WESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH 1205
VP+ L W+ + + E + + ++TY+
Sbjct: 140 VPTLALAEQWKERLGIFGEEYVGEFSGRIKELKP-------------LTVSTYDSAYV-- 184
Query: 1206 DRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN 1265
+ ++ +I DE H + + + + RL LT T + + L
Sbjct: 185 -NAEKLGNRFMLLIFDEVHHLP--AESYVQIAQMSIAPFRLGLTATFEREDGRH-EILKE 240
Query: 1266 FLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKH 1325
+ +F E + + + R FV
Sbjct: 241 VVGGKVF-----------------------ELFPDSLAGKHLAK--YTIKRIFVPLAEDE 275
Query: 1326 KVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
+VE E EK+ + + + + S + + + E R I
Sbjct: 276 RVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIA----- 330
Query: 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDY 1445
K+ L +L + + +++ F+ L+ +
Sbjct: 331 --------------------FNSKNKIRKLREILERHR--KDKIIIFTRHNELVYRISKV 368
Query: 1446 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFD 1505
TS +R +++ F F ++S + G+++ A+ +I
Sbjct: 369 FLIPAI-----THRTSREEREEILEGFRTGR---FRAIVSSQVLDEGIDVPDANVGVIMS 420
Query: 1506 TDWNPQVDLQAQARAHRIGQ-KRDVLVLRFETVQTVEE 1542
+ + +Q R R + K++ ++ + T E
Sbjct: 421 GSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEV 458
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 72.3 bits (176), Expect = 2e-12
Identities = 91/781 (11%), Positives = 220/781 (28%), Gaps = 123/781 (15%)
Query: 918 RIRERQKEFFSEIEAHKERLD----EVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRI 973
I ++E H++ L + ++ + + + I
Sbjct: 90 AIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPY---------ISTCLIDRECEEI 140
Query: 974 QREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKL-QEAKSMASHFENE 1032
Q+ N K + + + E + + L L AS +
Sbjct: 141 QQISENRSKAAGITKLIE----------CLCRSDKEHWPKSLQLALDTTGYYRASELWDI 190
Query: 1033 MDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLR 1092
++ E + + + + S E ++ S E + + P + K R
Sbjct: 191 REDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKAR 250
Query: 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET--KNDRGPFLVVVPSS 1150
YQ+ L N N ++ G GKT I + + + + + +
Sbjct: 251 SYQIE----LAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306
Query: 1151 VLPGWESEINFWAPRIHKIV------YCG------PPEERRRLFKEKIVHQKFNVLLTTY 1198
+ G ++ ++ ++++ T
Sbjct: 307 PV------YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS------DIIVVTP 354
Query: 1199 EYLMNKHDRPKLSKI-QWHYIIIDEGHRIKNASCK-------LNADLKHYQSSHRLL-LT 1249
+ L+N + L+ + + +I DE H L ++L LT
Sbjct: 355 QILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLT 414
Query: 1250 GTPL---QNNLEELWALLNFLLPNIFNS--------SEDFSQWFNKPFESNGDNSPDEAL 1298
+ N+EE + L + ++ ++ NKP
Sbjct: 415 ASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474
Query: 1299 LSEEENLLIINRLHQVLRPFV------------LRRLKHKVENELPEKIERLVRCEASAY 1346
+++ ++R ++ + ++ RL++ E
Sbjct: 475 PFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 534
Query: 1347 QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406
+ + + + + + + + + ++ + + + +L
Sbjct: 535 ESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKF 594
Query: 1407 RLCG---------------KLEMLDRLLPK--LKATDHRVLFFS----TMTRLLDVMEDY 1445
+ KLE L +L R L F+ ++ L ME+
Sbjct: 595 QEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN 654
Query: 1446 LTFKQYRYLRLDGHTSGGDRGALIDKFNQQ------DSPFFIFLLSIRAGGVGVNLQAAD 1499
+ L G + + S L++ G+++ +
Sbjct: 655 PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714
Query: 1500 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT-VEEQVRASAEHKLGVANQS 1558
V++++ N +Q + R G K ++ + E V+ + + +K Q
Sbjct: 715 LVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQK 774
Query: 1559 ITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALN------DLLARSESEIDVF 1612
F +E + R+ +++E P + + N A S +I +
Sbjct: 775 WDEETFAKKIHNLQMKERVL---RDSRRKEIKPKVVEGQKNLLCGKCKAYACSTDDIRII 831
Query: 1613 E 1613
+
Sbjct: 832 K 832
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 67.7 bits (164), Expect = 4e-11
Identities = 105/755 (13%), Positives = 232/755 (30%), Gaps = 121/755 (16%)
Query: 886 MDRLKSYKKHRHGRRIKQ-------LEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLD 938
M + + R I++ L + +E ++RIR+ ++ A LD
Sbjct: 4 MTADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEEER--GVSGAAALFLD 61
Query: 939 EVFKIKRERW-------------RGVNKYVK--EFHK-RKERIHREKIDRIQREK---IN 979
V +++ W G+ + ++ +F K K +HR+ + RI+
Sbjct: 62 AVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDP 121
Query: 980 LLKINDVEGYL----------RMVQDAKSDRVNKLLK-----ETEKYLQKLGSKL-QEAK 1023
+ I + L +K+ + KL++ + E + + L L
Sbjct: 122 VALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGY 181
Query: 1024 SMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQP 1083
AS + ++ E + + + + S E ++ S E + + P
Sbjct: 182 YRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPP 241
Query: 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPF 1143
+ K R YQ+ L N N ++ G GKT I + + +
Sbjct: 242 PVYETKKARSYQIE----LAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA 297
Query: 1144 LVV--VPSSVLPG-WESEI--NFWAPRIHKIVYCG---PPEERRRLFKEKIVHQKFNVLL 1195
VV + ++ +F G ++ ++ ++++
Sbjct: 298 KVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS------DIIV 351
Query: 1196 TTYEYLMN-KHDRPKLSKIQWHYIIIDEGHRIKNASC-----KLNADLKHYQSSHR---L 1246
T + L+N D S + +I DE H + K +S L
Sbjct: 352 VTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQIL 411
Query: 1247 LLTGTPLQNN----------LEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPD 1295
LT + N + L + L+ + + + ++ ++ NKP
Sbjct: 412 GLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471
Query: 1296 ---------EALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN---ELPEKIERLVRCEA 1343
L+SE E L+ L + + + ++ RL++ E
Sbjct: 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED 531
Query: 1344 SAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403
+ + + + + + + + + ++ + + + +L
Sbjct: 532 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT 591
Query: 1404 PIVR---------------LCGKLEMLDRLLPK--LKATDHRVLFFS----TMTRLLDVM 1442
+ KLE L +L R L F+ ++ L M
Sbjct: 592 AKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCM 651
Query: 1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ------DSPFFIFLLSIRAGGVGVNLQ 1496
E+ + L G + + S L++ G+++
Sbjct: 652 EENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711
Query: 1497 AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531
+ V++++ N +Q + R G K ++
Sbjct: 712 QCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 29/165 (17%)
Query: 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148
LR+YQ L ++ G + G GKT +A I L P L+VVP
Sbjct: 92 ISLRDYQEKALE---RWLVDK-RGCIVLPTGSGKTHVAMAAINEL------STPTLIVVP 141
Query: 1149 SSVLPG-WESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR 1207
+ L W+ + + + G + K + + ++TY+ +
Sbjct: 142 TLALAEQWKERLGIFGEEYVGE-FSG---------RIKELKP---LTVSTYDSA---YVN 185
Query: 1208 PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
+ ++ +I DE H + + + + RL LT T
Sbjct: 186 AEKLGNRFMLLIFDEVHHLP--AESYVQIAQMSIAPFRLGLTATF 228
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 59.6 bits (143), Expect = 1e-08
Identities = 75/602 (12%), Positives = 175/602 (29%), Gaps = 88/602 (14%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET--KNDRGPFLVVV 1147
K R YQ+ ++ N I+ G GKT + + + ++ + +G +
Sbjct: 13 KPRNYQLELALP--AMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 68
Query: 1148 PSSVLPGWESEINFWAPRIHKIV------YCGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
+ K G + + + ++++ T + L
Sbjct: 69 NQIPV------YEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 122
Query: 1202 MNK-HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ----------------SSH 1244
+N S + +I DE H + ++
Sbjct: 123 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 182
Query: 1245 RLLLTGTPLQNNLEELWALLNFLLPNIF----NSSEDFSQWFNKP------FESNGDNSP 1294
+ L+ + L L ++ ++ E+ Q KP ES +
Sbjct: 183 VGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242
Query: 1295 DEALLSEEENLLIINRLH-----------------QVLRPFVLRRLKHKVENELPEKIER 1337
+ + + + Q +++ K + ++P+K E
Sbjct: 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 302
Query: 1338 LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397
C+A +++ + L +++ + + + + + ++ +
Sbjct: 303 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 362
Query: 1398 PK-HYLPPIVRLCG----KLEMLDRLL------PKLKATDHRVLFFSTMTRLLDVMEDYL 1446
K L + R KLE L +L T V + + L + +E
Sbjct: 363 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 422
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQ------DSPFFIFLLSIRAGGVGVNLQAADT 1500
+ L G + + S L++ G+++ +
Sbjct: 423 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482
Query: 1501 VIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560
VI+++ N +Q + R G K +L ++ +EQ+ E + + +
Sbjct: 483 VILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE--KEQINMYKEKMMNDSILRLQ 540
Query: 1561 AGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDL------LARSESEIDVFES 1614
+ + + +E+ PV D + L LA +++ V E
Sbjct: 541 T-WDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIED 599
Query: 1615 VD 1616
Sbjct: 600 CH 601
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 3e-07
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 34/106 (32%)
Query: 901 IKQLEKFEQ------KMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGV-NK 953
I Q ++ Q K +EE++KR++E D K+ + WR K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQEL---------------DAASKVMEQEWREKAKK 118
Query: 954 YVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSD 999
++E+++R E++++ + N +I D Q +D
Sbjct: 119 DLEEWNQR----QSEQVEKNKIN--N--RIADKA----FYQQPDAD 152
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-06
Identities = 35/236 (14%), Positives = 88/236 (37%), Gaps = 9/236 (3%)
Query: 852 TKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKM 911
T+ E++ + + R K + +L K + Q E
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL--QEKLQAETELYAE 910
Query: 912 KEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKID 971
EE + R+ +++E + + R++E + ++ K ++ +E++ E+
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 972 RIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKET---EKYLQKLGSKLQEAKSMASH 1028
R + + + ++ + + D+ NKL KE E+ + L + L E + A +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIME-DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 1029 FE--NEMDETQTVSVVEKYEPAVENEDESDQAKHYLES-NEKYYLMAHSIKESVSE 1081
E+ + + + ++ E ++ K LE + + ++ ++E
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-04
Identities = 31/230 (13%), Positives = 89/230 (38%), Gaps = 30/230 (13%)
Query: 810 QKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRR 869
+ +L E+N + ++ + + + +++ EL++ L ++ R
Sbjct: 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRV---------RLAAKKQELEE-ILHEMEAR 935
Query: 870 LRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSE 929
+ + + + + +++ +Q+ E++++EE R ++ Q E +
Sbjct: 936 IEE--EEERSQQLQAEKKKMQ-----------QQMLDLEEQLEEEEAAR-QKLQLEKVTA 981
Query: 930 IEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGY 989
K+ D++ ++ + NK KE +ER+ + + E+ +
Sbjct: 982 DGKIKKMEDDILIMEDQ----NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 990 LRMVQDAKS--DRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQ 1037
M+ + + + K +E EK +KL + + + + ++ E +
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-05
Identities = 61/500 (12%), Positives = 148/500 (29%), Gaps = 79/500 (15%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVV--V 1147
K R YQ+ + N I+ G GKT + + + ++ VV
Sbjct: 4 KPRNYQLELALP--AKKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59
Query: 1148 PSSVLPG-WESEI--NFWAPRIHKIVYCG---PPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
+ + F + G + + ++ ++++ T + L
Sbjct: 60 NQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDN------DIIILTPQIL 113
Query: 1202 MN-KHDRPKLSKIQWHYIIIDEGHRIKN--------ASCKLNADLKHYQSSHRLL-LTGT 1251
+N ++ S + +I DE H + + +++ LT +
Sbjct: 114 VNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTAS 173
Query: 1252 PLQN----------NLEELWALLNF-LLPNIFNSSEDFSQWFNKPFESN---GDNSPDEA 1297
++ +L A L+ ++ + ++ + Q KP + + + +
Sbjct: 174 VGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233
Query: 1298 LLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN 1357
+ + +L + + + + + + +K E+ + A M EE
Sbjct: 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEE 293
Query: 1358 LGSIGNSKGRSVH--------NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLC 1409
+ H + + YL + + + R
Sbjct: 294 SRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFE 353
Query: 1410 GKLEMLDRLL-------PKLK------------ATDHRVLFFS----TMTRLLDVMEDYL 1446
KLE L+++ PKL+ + + + F + L +E+
Sbjct: 354 EKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENP 413
Query: 1447 TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF------LLSIRAGGVGVNLQAADT 1500
+ L G + + F L++ G+++ +
Sbjct: 414 ALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNL 473
Query: 1501 VIIFDTDWNPQVDLQAQARA 1520
VI+++ N +Q + R
Sbjct: 474 VILYEYVGNVIKMIQTRGRG 493
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 37/182 (20%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEM--GLGKTVQVIALICYLMETKNDRGPFLVVV 1147
R YQ + V L M G GKTV + L
Sbjct: 178 SPRYYQQIAINRAVQSVLQGKKRSLI-TMATGTGKTVVAFQISWKLWSA----------- 225
Query: 1148 PSSVLPGWESEINFWAPRI----H--------KIVYCGPPEERRRLFKEKIVHQKFNVLL 1195
W ++ PRI K P + R + V + +
Sbjct: 226 ------RWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKVVKSREIYF 279
Query: 1196 TTYEYLMN----KHDRPKLSKIQWHYIIIDEGHR-IKNASCKLNADLKHYQSSHRLLLTG 1250
Y+ + + + + + IIIDE HR + L++++ + ++ +T
Sbjct: 280 AIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTA 339
Query: 1251 TP 1252
TP
Sbjct: 340 TP 341
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-05
Identities = 32/277 (11%), Positives = 100/277 (36%), Gaps = 22/277 (7%)
Query: 807 MDMQKRKLLVEQNWILKQQKTKQRMSTC---FNKLKESV----SSSEDISAKTKSVIELK 859
L + QK + RM + ++++ + + K + L+
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQ-RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863
Query: 860 KLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRI 919
+ + + +Q+ +R + + L+ + R + + E + K++ +R
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR----RMMAKRELKKLKIEARSVERY 919
Query: 920 RERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQRE--- 976
++ ++I + ++DE K + +N + E++ R ++R++
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-RSDVERLRMSEEE 978
Query: 977 -KINLLKINDVEGYLRMVQDAKSD---RVNKLLKETEKYLQKLGSKLQEAKSMASHFENE 1032
K ++ ++ + ++ + + +KY + + E K + + E
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038
Query: 1033 MDE--TQTVSVVEKYEPAVENEDESDQAKHYLESNEK 1067
+E + ++ +E + + + L+ N++
Sbjct: 1039 KEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-04
Identities = 71/585 (12%), Positives = 170/585 (29%), Gaps = 112/585 (19%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVV--V 1147
K R YQ+ + ++ N ++ G GKT I + + + VV
Sbjct: 7 KARSYQIELAQP--AINGK--NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 1148 PSSVLPGWESEINFWAPRIHKIV------YCG------PPEERRRLFKEKIVHQKFNVLL 1195
+ G ++ ++ ++++
Sbjct: 63 TKVPV------YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS------DIIV 110
Query: 1196 TTYEYLMN---KHDRPKLSKIQWHYIIIDEGHRI--KNASCKLNADLKHYQSSHR----- 1245
T + L+N LS +I DE H + L + +
Sbjct: 111 VTPQILVNSFEDGTLTSLSIF--TLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQ 168
Query: 1246 -LLLTGTPLQ----------NNLEELWALLNF-LLPNIFNSSEDFSQWFNKPFESN---G 1290
L LT + ++ L + L+ + + + ++ ++ NKP
Sbjct: 169 ILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 228
Query: 1291 DNSPDE------ALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN---ELPEKIERLVRC 1341
+ L+SE E L+ L + + + ++ RL++
Sbjct: 229 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQL 288
Query: 1342 EASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK-- 1399
E + + + + + + + + + + YL++ + +
Sbjct: 289 EDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALS--YLTEFFTNVKNGPYTELE 346
Query: 1400 -HYLPPIVRLCGKLEMLDR----LLPKL------------KATDHRVLFFS----TMTRL 1438
H +L L + PKL R L F+ ++ L
Sbjct: 347 QHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL 406
Query: 1439 LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ------DSPFFIFLLSIRAGGVG 1492
ME+ + L G + + S L++ G
Sbjct: 407 KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 466
Query: 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552
+++ + V++++ N +Q + R R + +LV +T + +K
Sbjct: 467 IDIVQCNLVVLYEYSGNVTKMIQVRGRG-RAAGSKCILVTS----KTEVVENEKCNRYKE 521
Query: 1553 GVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDA 1597
+ N+++ + ++ E+ ++ + + D+
Sbjct: 522 EMMNKAVE----------KIQKWDEETFAKKIHNLQMKERVLRDS 556
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 6e-04
Identities = 18/122 (14%), Positives = 31/122 (25%)
Query: 1737 PTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPPSKRGRGRPRRADKSPVPV 1796
S V + P PPP + + + P K + P P
Sbjct: 30 APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 89
Query: 1797 VLPAPSGTVKVEKDAMTGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPV 1856
P + ++D +S AS + S + + + A
Sbjct: 90 PKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRN 149
Query: 1857 AP 1858
P
Sbjct: 150 QP 151
|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-04
Identities = 28/215 (13%), Positives = 79/215 (36%), Gaps = 13/215 (6%)
Query: 823 KQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPI 882
K K ++ + ++ L + ++ + E +++L+ L + +
Sbjct: 47 KGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHA 106
Query: 883 TTDMDRLKSYKKHRHGRRIKQL-EKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVF 941
T ++ + + +K L E E +K+ ++K +R + + ++
Sbjct: 107 TEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDK-AAQE 165
Query: 942 KIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRV 1001
++K+E + V + K +++ ++ L+ +Q+ +
Sbjct: 166 RLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLR---------AIQEKEGQLQ 216
Query: 1002 NKLLKETEKYLQKLGSKLQEA--KSMASHFENEMD 1034
+ + E E+ L+ L ++QE M F + +
Sbjct: 217 QEAVAEYEEKLKTLTVEVQEMVKNYMKEVFPDGPE 251
|
| >1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1 Length = 339 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 26/234 (11%), Positives = 75/234 (32%), Gaps = 28/234 (11%)
Query: 766 IPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQ 825
+ + + + E+D + H S + + ++ + + + + +
Sbjct: 47 ARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPE 106
Query: 826 KTKQRMS---TCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPI 882
+++ + + ++++ + A + +L F P
Sbjct: 107 LAREKFAELRAQYVVTRDTIKAKGRSHATAQE-----------EILKLSEVFKQFRLVPK 155
Query: 883 TTD--MDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEV 940
D ++ ++ R++ E+ K+ E+ K ++ F+ E +
Sbjct: 156 QFDYLVNSMRVMMD-----RVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 210
Query: 941 FKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQ 994
+ + + ++ H E +HR Q E+ L I V+ R +
Sbjct: 211 IAMNK-------PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 257
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2693 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.98 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.97 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.97 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.96 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.96 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.96 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.95 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.95 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.94 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.94 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.94 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.93 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.93 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.92 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.91 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.9 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.9 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.9 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.89 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.89 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.87 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.86 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.84 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.78 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.78 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.76 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.75 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.75 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.75 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.74 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.73 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.73 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.73 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.7 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.7 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.69 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.69 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.69 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.68 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.68 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.67 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.66 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.66 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.65 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.65 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.65 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.64 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.62 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.62 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.62 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.41 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.59 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.58 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.57 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.57 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.57 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.55 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.55 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.54 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.54 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.54 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.52 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.46 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.46 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.39 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.39 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.38 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.23 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.22 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.17 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.98 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.65 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.26 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.94 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.83 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.73 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.51 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.45 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 95.83 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.41 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 93.77 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 93.14 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 92.57 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 92.29 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.28 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.18 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.42 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.73 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.58 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 90.49 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 90.46 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 89.89 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 88.2 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 87.96 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 87.82 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 87.59 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 87.45 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 87.33 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 87.25 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 86.85 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 86.51 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 86.5 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 86.38 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 86.12 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 85.95 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 84.18 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 83.8 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 82.35 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 81.99 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 81.99 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 81.44 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 81.24 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 81.19 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 80.66 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 80.64 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-76 Score=783.83 Aligned_cols=469 Identities=44% Similarity=0.741 Sum_probs=398.8
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+|+|+++.+++......+|+|||||.+++.||..|
T Consensus 225 ~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E 304 (800)
T 3mwy_W 225 LSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT 304 (800)
T ss_dssp CSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHH
T ss_pred cccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhh---------hhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEK---------IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~---------i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
|.+|+|.+.+++|+|....+..+.... .....++|+||||+++.+ +...|..+.|++|||||||++||.
T Consensus 305 ~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~--~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 305 FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHH--THHHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHh--hHHHHhcCCcceeehhhhhhhcCc
Confidence 999999999999999988776544322 234578999999999987 456788889999999999999999
Q ss_pred cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHH
Q 000047 1230 SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIIN 1309 (2693)
Q Consensus 1230 sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~ 1309 (2693)
.+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-... . ......+.
T Consensus 383 ~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~--------~---------~~~~~~~~ 445 (800)
T 3mwy_W 383 ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ--------D---------EEQEEYIH 445 (800)
T ss_dssp SSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC--------T---------THHHHHHH
T ss_pred hhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc--------c---------hhHHHHHH
Confidence 999999999999999999999999999999999999999999987665531110 0 01223567
Q ss_pred HHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc-c---CCCCCcchhHHHHHHHHhhCCccc
Q 000047 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS-I---GNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1310 RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s-i---~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
+|+.+++||++||++.++...||++.+.++.|.|++.|+.+|+.+...... + .......+++.++.||++|+||++
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l 525 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYL 525 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhh
Confidence 899999999999999999999999999999999999999999988654221 1 112234688999999999999999
Q ss_pred cchhhhhhhccCCCC------CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC
Q 000047 1386 SQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 1459 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~------~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGS 1459 (2693)
+....+......... ....++..++|+.+|.++|.++...++||||||+|+.++++|+++|..+|+.|++|+|+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~ 605 (800)
T 3mwy_W 526 FDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGT 605 (800)
T ss_dssp SSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTT
T ss_pred hcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 876544332211111 11245678999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1460 TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++..+|++++++|+.++.+.+|||+||++||+||||+.|++||+||++|||..++||+||+||+||+++|+||+|++.+|
T Consensus 606 ~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 606 VPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcccC
Q 000047 1540 VEEQVRASAEHKLGVANQSITAGFFDN 1566 (2693)
Q Consensus 1540 IEEkIleraekKl~Li~kVIqaG~fD~ 1566 (2693)
+||+|++++..|+.+++.+|+.|..+.
T Consensus 686 iEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 686 VEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp HHHHHHHHHHHHTTSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 999999999999999999998876543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-72 Score=725.11 Aligned_cols=471 Identities=31% Similarity=0.511 Sum_probs=395.3
Q ss_pred CCcchHHHHHHHHHHHHHh-----hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecCchHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy-----~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPtSLL~QW~eE 1158 (2693)
...|||||++||+||+..+ .++.||||||+||||||+|+|+++.+++..... .+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3689999999999999876 456789999999999999999999998876543 3458999999999999999
Q ss_pred HHHHCCC-CcEEEEcC-ChHHHHHHHHhhhhc----CCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch
Q 000047 1159 INFWAPR-IHKIVYCG-PPEERRRLFKEKIVH----QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232 (2693)
Q Consensus 1159 feKwaPs-LkVIvy~G-s~~eRk~l~ke~i~~----~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK 1232 (2693)
|.+|++. +.++.+.+ ....+...+...... ..++|+||||+.+... ...+....|++|||||||++||..++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~vI~DEaH~ikn~~~~ 210 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSDNQ 210 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh--HHHhhcCCccEEEEECceecCChhhH
Confidence 9999875 55666655 443333332222221 2589999999999874 35678889999999999999999999
Q ss_pred HHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1233 LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1233 lsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.++++..+.+.+||+|||||++|++.|||++|+||.|++|++...|.++|..|+.......... .........+.+|+
T Consensus 211 ~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 211 TYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876543322111 11223344577899
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccC----CCCCcchhHHHHHHHHhhCCccccch
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQL 1388 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~----~sk~rslln~LmqLRKICnHPyL~~~ 1388 (2693)
.++.||++||++.++...||++.+.++.|+|++.|+.+|+.+........ .......+..++.||++|+||+++..
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999876543221 11223567889999999999998743
Q ss_pred hhhh-------hhccCCCCCC--ChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1389 HAEE-------VDTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1389 ~~EE-------id~li~~~~l--~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.... ....++..+. ......++|+.+|..+|..+.. .++|+||||+++.++++|+.+|...|+.|++|||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G 448 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 448 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeC
Confidence 2111 0111111111 1123568999999999998864 6899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++.++|++++++|++++...++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+
T Consensus 449 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999998877789999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1539 TVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqaG 1562 (2693)
|+||+|++++..|..+++.+++++
T Consensus 529 tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 529 TIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp SHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999765
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-67 Score=652.78 Aligned_cols=439 Identities=31% Similarity=0.562 Sum_probs=381.3
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1083 P~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
|..+ ...|||||.+|+.||..++..+.+|||||+||+|||+++++++..+.... ..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~-~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNI-KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSC-SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhh-hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccHHHHHHHHHHHHHH
Confidence 4444 37899999999999999888899999999999999999999998887543 456899999999999999999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
+|.+++.+|.|.... .....++|+|+||+.+.+.. .+....|++|||||||+++|..++.++++..+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~---~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccc---hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhcc
Confidence 999999999887521 22357899999999998643 3777899999999999999999999999999999
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.++|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.||++||
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~--------------~~~~~~l~~~l~~~~lrr 243 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFILRR 243 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEECC
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc--------------HHHHHHHHHHHhhHeeee
Confidence 999999999999999999999999999999999999999987765421 123467889999999999
Q ss_pred hHhH--HhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-CCC----CCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1323 LKHK--VENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-GNS----KGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1323 tKkD--VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-~~s----k~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
++.+ +...||++.+..+.|+|++.|+.+|+.+....... ... ....+...++.||++|+||++....
T Consensus 244 ~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~------ 317 (500)
T 1z63_A 244 TKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG------ 317 (500)
T ss_dssp CTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS------
T ss_pred cccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc------
Confidence 9976 67899999999999999999999999876553221 111 1124677789999999999886421
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
......++|+..|.++|.++...++|+||||+++.++++|.++|... |+.+.+++|+++.++|++++++|++
T Consensus 318 -------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 318 -------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp -------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred -------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC
Confidence 12345688999999999999999999999999999999999999885 9999999999999999999999987
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~L 1554 (2693)
+. .+.+||++|+++|+||||+.|++||+||++|||..++||+||+||+||+++|+||+|++.+|+||+|++++..|..+
T Consensus 391 ~~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 391 NP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp CT-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CC-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 63 34578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccC
Q 000047 1555 ANQSITAG 1562 (2693)
Q Consensus 1555 i~kVIqaG 1562 (2693)
++.+++++
T Consensus 470 ~~~~~~~~ 477 (500)
T 1z63_A 470 FKDIISSG 477 (500)
T ss_dssp SSSGGGST
T ss_pred HHHHhhcC
Confidence 99999865
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-48 Score=520.28 Aligned_cols=446 Identities=17% Similarity=0.193 Sum_probs=331.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
.+|+|||++++.|++. ..+.++||||+||+|||+++++++..++..+. .+++|||||.+++.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 6899999999999986 33568899999999999999999998876543 456999999999999999999998 6777
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccch---HHHHHHhh--cc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASCK---LNADLKHY--QS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sSK---lsraLk~L--ka 1242 (2693)
.+|.|...... ..........++|+|+||+.+.+.... ..+...+|++|||||||+++|..++ .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~-~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEA-QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHH-HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhh-hhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 77766543321 111123345789999999999874332 3466779999999999999997655 47788877 67
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCccc---------CCCCCCc-h----hhhhH--------
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE---------SNGDNSP-D----EALLS-------- 1300 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e---------~~g~~s~-~----e~~Ls-------- 1300 (2693)
.++|+|||||++|++.|+|++++|+.|..|.+...|..++..... ....... . ...+.
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 889999999999999999999999999999999988876432110 0000000 0 00000
Q ss_pred -H-----HH-HHHHHHHHHHHh-----hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1301 -E-----EE-NLLIINRLHQVL-----RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1301 -e-----Ee-~lliI~RLhkVL-----rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
. +. .......+..++ ..+++|+++..+ ..+|.+....+.+.++.....+|+...... ......
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~ 461 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMG----ARKSAE 461 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTT----CCSSGG
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhh----hhhhhH
Confidence 0 00 000001122222 234555555555 478888888899999988888887543221 000000
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
.. . ..+.+|..... . +.. .....+..+.|+.+|.++|.. ..+.|+||||+++.+++.|.++|..
T Consensus 462 -~~----~-~~~l~pe~~~~---~----l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 462 -DR----A-RDMLYPERIYQ---E----FEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp -GG----T-HHHHCSGGGTT---T----TTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred -HH----H-hhhcChHHHHH---H----hhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 00 0 01122211110 0 000 112345667899999999987 5688999999999999999999984
Q ss_pred -cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1449 -KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1449 -rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
.|+++..+||+++..+|.+++++|++++..+ .+||+|+++++|||++.|++||+||++|||..|.||+||+||+||++
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCS
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCc
Confidence 6999999999999999999999999876333 46889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1528 eV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
.|.||+++..+++|++|++.+..|+.++...+..
T Consensus 605 ~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 605 DIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp CCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred eEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 9999999999999999999999998777666543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=449.07 Aligned_cols=436 Identities=15% Similarity=0.169 Sum_probs=289.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--Ps 1165 (2693)
.+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. .++.||.++|.+|+ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4799999999999875 3 9999999999999999999888765 234569999998 78899999999998 55
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH--HHHH-hhcc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN--ADLK-HYQS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls--raLk-~Lka 1242 (2693)
..+..++|........ .....++|+|+||+.+........+...+|++|||||||++++...... ..+. ....
T Consensus 81 ~~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 6899999876543221 1123689999999999886655566778899999999999987533221 2222 2346
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCC---CChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIF---NSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF---~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.++|+|||||. ++..+++.++.++....+ .....+...+..+... ......+. .....+...+.+++
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF----EWVRVDLP-----EIYKEVRKLLREML 226 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE----EEEEECCC-----HHHHHHHHHHHHHH
T ss_pred CeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCce----eEEecCCc-----HHHHHHHHHHHHHH
Confidence 78999999999 777788777777754322 2221111111111000 00000011 12345667777888
Q ss_pred hhhhHhHHhhcCccceeE-eeeccccHHHHHHHHHHHHH--------------------hhccCCCCCcchhHHHHHHHH
Q 000047 1320 LRRLKHKVENELPEKIER-LVRCEASAYQKLLMKRVEEN--------------------LGSIGNSKGRSVHNSVMELRN 1378 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~-vV~ceLSa~Qk~LYk~Lee~--------------------l~si~~sk~rslln~LmqLRK 1378 (2693)
.+|++......+...... +-...+......++..+... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 888876655443322111 11111111111111111100 000000000112222223333
Q ss_pred hhCCccccchhhhhhhccCCCCCCC----------hhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHH
Q 000047 1379 ICNHPYLSQLHAEEVDTLIPKHYLP----------PIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1379 ICnHPyL~~~~~EEid~li~~~~l~----------~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L 1446 (2693)
.+.|+.... ...+....... .....+.|+..|.++|.++. ..++|+||||+++.+++.|.++|
T Consensus 307 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 307 EAKAGSTKA-----SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHTTCCHH-----HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred hhccccchh-----hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHH
Confidence 222211100 00000000000 00145679999999999876 57899999999999999999999
Q ss_pred hhcCCeEEEEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhh
Q 000047 1447 TFKQYRYLRLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 1518 (2693)
Q Consensus 1447 ~~rGikylRLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIG 1518 (2693)
...|+.+.+++| +++.++|++++++|+++... |||+|+++++||||+.|++||+||++|||..++||+|
T Consensus 382 ~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~G 458 (494)
T 1wp9_A 382 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 458 (494)
T ss_dssp HHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHT
T ss_pred HHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHh
Confidence 999999999999 89999999999999987654 7999999999999999999999999999999999999
Q ss_pred hhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 000047 1519 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556 (2693)
Q Consensus 1519 RAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~ 1556 (2693)
|+||.|+ +.+|+|++.+++||+++.++..|..+++
T Consensus 459 R~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 459 RTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp TSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred hccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999998 8999999999999999999999987764
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=400.92 Aligned_cols=444 Identities=15% Similarity=0.161 Sum_probs=235.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeKwaP- 1164 (2693)
.+|+|||.+++.+++. +.++|++++||+|||++++.++.+++..... .+.+|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999875 6789999999999999999888877765432 4569999998 778999999999987
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh--
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY-- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L-- 1240 (2693)
++.+..++|........ ......++|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433211 11123589999999999876655555 566799999999999988765 33333222
Q ss_pred -------cccccccccccCCCCCH-------HHHHHHhhhccCCC----CCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1241 -------QSSHRLLLTGTPLQNNL-------EELWALLNFLLPNI----FNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1241 -------ka~~RLLLTGTPLQNnL-------eELwSLLnFL~P~i----F~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
...++|+|||||..++. ..++.+...+.... ......+..++..|.................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 22568999999988653 33334444444332 2234566666665543221110000000011
Q ss_pred HHHHHHHHHHHHhhh----------------------hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc
Q 000047 1303 ENLLIINRLHQVLRP----------------------FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS 1360 (2693)
Q Consensus 1303 e~lliI~RLhkVLrP----------------------FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s 1360 (2693)
.....+..++.+++. ++....+......+|.+ ..+..+|..+......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTEH 307 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccccc----------chhHHHHHHHHHHHHH
Confidence 111122333333222 22222222121122211 1111111111100000
Q ss_pred -------cCCCCCcchhHHHHHHHHhhC----Cccccchhhhhh-hccCCC-----CCCChhhhcccHHHHHHHHHHHhh
Q 000047 1361 -------IGNSKGRSVHNSVMELRNICN----HPYLSQLHAEEV-DTLIPK-----HYLPPIVRLCGKLEMLDRLLPKLK 1423 (2693)
Q Consensus 1361 -------i~~sk~rslln~LmqLRKICn----HPyL~~~~~EEi-d~li~~-----~~l~~Lvr~SgKLelLdeLL~kLk 1423 (2693)
............+..+...|. +.+. . ..... ..+... .........++|+..|.++|.+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~ 385 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT-E-LEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 385 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC-H-HHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC-H-HHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHh
Confidence 000000001111111111111 0000 0 00000 000000 000000123679999999998765
Q ss_pred --cCCCeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeecc
Q 000047 1424 --ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1424 --atGhKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrA 1488 (2693)
..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++ +... |||+|++
T Consensus 386 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 462 (556)
T 4a2p_A 386 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 462 (556)
T ss_dssp HHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC-
T ss_pred cCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcCc
Confidence 66899999999999999999999765 5666777888999999999999987 6554 7999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
+++||||++|++||+||++|||..|+||+|| +| .+++.+|.|++.++++++ +.....|..++..++.
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 55 477889999999999998 6667777777777664
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=402.82 Aligned_cols=375 Identities=16% Similarity=0.196 Sum_probs=259.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
.+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||.++|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 457899999999998764 4569999999999999998887765 4579999999 8889999999995 5
Q ss_pred Cc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1166 IH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1166 Lk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
+. +.++.|... ...+|+|+||+.+....+ .+ ..+|++|||||||++.+.... ..+..+.+.+
T Consensus 158 ~~~v~~~~g~~~------------~~~~Ivv~T~~~l~~~~~--~~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPF 220 (472)
T ss_dssp GGGEEEBSSSCB------------CCCSEEEEEHHHHHHTHH--HH-TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSE
T ss_pred CcceEEECCCcC------------CcCCEEEEEcHHHHHHHH--Hh-cCCCCEEEEECCcCCCChHHH--HHHHhcCCCe
Confidence 66 788877542 246899999999976432 12 246999999999999987543 4566678889
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
+|+|||||.+++..+ . .|..++.+++.++..
T Consensus 221 ~l~lSATp~~~~~~~----------------~---------------------------------~l~~~~~~~~~~~~~ 251 (472)
T 2fwr_A 221 RLGLTATFEREDGRH----------------E---------------------------------ILKEVVGGKVFELFP 251 (472)
T ss_dssp EEEEESCCCCTTSGG----------------G---------------------------------SHHHHTCCEEEECCH
T ss_pred EEEEecCccCCCCHH----------------H---------------------------------HHHHHhCCeEeecCH
Confidence 999999998654211 0 122333444444434
Q ss_pred hHHhh-cCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhH--HHHHHHHhh-CCccccchhhhhhhccCCCC
Q 000047 1325 HKVEN-ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHN--SVMELRNIC-NHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1325 kDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln--~LmqLRKIC-nHPyL~~~~~EEid~li~~~ 1400 (2693)
.++.. .+++.....+.+.++..++..|..+...+..........+.+ .+..+-.++ ..+......... . .
T Consensus 252 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~ 325 (472)
T 2fwr_A 252 DSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAW-E-----E 325 (472)
T ss_dssp HHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHH-H-----H
T ss_pred HHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHH-H-----H
Confidence 44432 366667777888999988888876544332211111000000 000000000 000000000000 0 0
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
........+.|+..|.++|.. ..++++||||+++..++.|.++|. +..++|.++..+|++++++|+++...
T Consensus 326 ~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~-- 396 (472)
T 2fwr_A 326 ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR-- 396 (472)
T ss_dssp HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS--
T ss_pred HHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC--
Confidence 000112356799999999987 458999999999999999999985 45689999999999999999987655
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc-ccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RDVLVLRFETVQTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk-KeV~VyRLIT~gSIEEkIleraekKl~Li 1555 (2693)
+||+|+++++||||+.+++||+||++||+..+.|++||++|.|+. +.|.||+|++.+|+||++.++.+.|..++
T Consensus 397 -vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 397 -AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp -BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred -EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 689999999999999999999999999999999999999999998 78999999999999999999988776553
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=391.55 Aligned_cols=446 Identities=14% Similarity=0.138 Sum_probs=251.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeKwaP- 1164 (2693)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5799999999999874 7889999999999999999888877765432 4569999998 778999999999976
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh--
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY-- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L-- 1240 (2693)
++.+..++|........ .....+.+|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 67888888876432211 11123589999999999876655445 556799999999999988764 33322222
Q ss_pred --------cccccccccccCCCCC-------HHHHHHHhhhccCCCC----CChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 --------QSSHRLLLTGTPLQNN-------LEELWALLNFLLPNIF----NSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 --------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P~iF----~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
...++|+|||||.+++ +..++.++.++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 1246899999999877 3444445555553322 12344554444433221110000000001
Q ss_pred HHHHHHHHHHHHHhhhhhhh-----------------------hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh
Q 000047 1302 EENLLIINRLHQVLRPFVLR-----------------------RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPFLLR-----------------------RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l 1358 (2693)
......+.+++.+++.++-. ..+......++. ......++..+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 304 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMAD----------KEEESRVCKALFLYT 304 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSS----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccc----------hhhHHHHHHHHHHHH
Confidence 11112233344443332210 000000001111 001111111110000
Q ss_pred hcc-------CCCCCcchhHHHHHHHHhh---CCccccchhhhhhhccCCC-----CCCChhhhcccHHHHHHHHHHHhh
Q 000047 1359 GSI-------GNSKGRSVHNSVMELRNIC---NHPYLSQLHAEEVDTLIPK-----HYLPPIVRLCGKLEMLDRLLPKLK 1423 (2693)
Q Consensus 1359 ~si-------~~sk~rslln~LmqLRKIC---nHPyL~~~~~EEid~li~~-----~~l~~Lvr~SgKLelLdeLL~kLk 1423 (2693)
..+ ...........+..+...+ .+..+..........+... .........+.|+..|.++|.++.
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 384 (555)
T 3tbk_A 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEY 384 (555)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHh
Confidence 000 0000000001111111110 0000000000000000000 000001123679999999998875
Q ss_pred c--CCCeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeecc
Q 000047 1424 A--TDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1424 a--tGhKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrA 1488 (2693)
. .++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++ +... |||+|++
T Consensus 385 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 461 (555)
T 3tbk_A 385 HLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSV 461 (555)
T ss_dssp HHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCC
T ss_pred ccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcch
Confidence 3 4599999999999999999999876 3456666779999999999999987 5555 7899999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
+++||||+.|++||+||++|||..|+||+|| |+.+.+.+|.|++.++.++. ......|..++++.+.
T Consensus 462 ~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp TTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999 55588999999999999887 4445556566665553
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=407.89 Aligned_cols=448 Identities=14% Similarity=0.134 Sum_probs=245.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 46899999999998864 6889999999999999999988887765432 56799999975 78999999999987
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++.+..++|........ .....+++|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999999987443211 11224689999999999876655445 556789999999999998664 33333332
Q ss_pred c--------ccccccccccCCCCC----------HHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 Q--------SSHRLLLTGTPLQNN----------LEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 k--------a~~RLLLTGTPLQNn----------LeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
. ..++|+|||||.+++ +.+||.+|++- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 2 256899999998754 33444444421 1122233456777776654332111100000011
Q ss_pred HHHHHHHHHHHHHhhhhh----------------------hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh-
Q 000047 1302 EENLLIINRLHQVLRPFV----------------------LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL- 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPFL----------------------LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l- 1358 (2693)
......+..++.+++.++ ....+......++... ....+|..+....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICTE 547 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHHH
Confidence 111223344444444332 1111111111112111 1111111110000
Q ss_pred ------hccCCCCCcchhHHHHHHHHhhCCccc--cchhhhhhhccCCCC------CCChhhhcccHHHHHHHHHHHhh-
Q 000047 1359 ------GSIGNSKGRSVHNSVMELRNICNHPYL--SQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLK- 1423 (2693)
Q Consensus 1359 ------~si~~sk~rslln~LmqLRKICnHPyL--~~~~~EEid~li~~~------~l~~Lvr~SgKLelLdeLL~kLk- 1423 (2693)
..............+..++..|.+..- +..........+... ........++|+..|.++|.+..
T Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (797)
T 4a2q_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (797)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc
Confidence 000000000111122222222211000 000000000000000 00000124679999999998753
Q ss_pred -cCCCeEEEEEcchHHHHHHHHHHhh------------cCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeeccc
Q 000047 1424 -ATDHRVLFFSTMTRLLDVMEDYLTF------------KQYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1424 -atGhKVLIFSQft~tLDILed~L~~------------rGikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrAG 1489 (2693)
..++|+||||+++.+++.|.++|.. .|+.+..+||+++.++|.+++++|++ +... |||+|+++
T Consensus 628 ~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~~ 704 (797)
T 4a2q_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVA 704 (797)
T ss_dssp HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC-
T ss_pred cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCch
Confidence 5679999999999999999999976 46677888999999999999999987 6555 89999999
Q ss_pred ccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
++||||+.|++||+||++|||..|+||+|| +|. +++.+|.|++.++++++ +.....|..++.++|..
T Consensus 705 ~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp ------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 554 78899999999999998 66777888888777753
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=370.89 Aligned_cols=230 Identities=28% Similarity=0.433 Sum_probs=177.6
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh-ccCCCC----CcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIGNSK----GRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~-si~~sk----~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
-+||+|++|..+||++.+.+++|+|++.|+.+|+.+..... .+.... ...+++.++.||++|+||+++...
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~---- 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG---- 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS----
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC----
Confidence 47999999999999999999999999999999998865532 222111 124678899999999999987411
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~F 1472 (2693)
..++..++|+..|.++|.++...++|+||||+++.++++|+++|... |+.+.+|+|+++..+|++++++|
T Consensus 89 ---------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 89 ---------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp ---------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred ---------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence 12356789999999999999889999999999999999999999885 99999999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
+++. .+.|||++|++||+||||+.|++||+||+||||..++||+||+||+||+++|+||+|++.+|+||+|++++..|.
T Consensus 160 ~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~ 238 (271)
T 1z5z_A 160 QNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 238 (271)
T ss_dssp HHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCH
T ss_pred cCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Confidence 8763 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccC
Q 000047 1553 GVANQSITAG 1562 (2693)
Q Consensus 1553 ~Li~kVIqaG 1562 (2693)
.+++.+++++
T Consensus 239 ~l~~~~~~~~ 248 (271)
T 1z5z_A 239 SLFKDIISSG 248 (271)
T ss_dssp HHHTTGGGGT
T ss_pred HHHHHHHccC
Confidence 9999999865
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=413.24 Aligned_cols=452 Identities=15% Similarity=0.174 Sum_probs=244.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
..+|++||.+++.|++. +.++||+++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999999965 7889999999999999998888766654321 56799999975 78999999999987
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++++..++|....+... ......++|+|+||+.|........+ ....|++|||||||++.+... +...+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78899999976443211 11123689999999999876654444 456789999999999998765 33333333
Q ss_pred c--------ccccccccccCCCCCHH----------HHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 Q--------SSHRLLLTGTPLQNNLE----------ELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 k--------a~~RLLLTGTPLQNnLe----------ELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
. ..++|+|||||.+++.. +||.+|+.- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 2 25689999999886543 334444321 1112223456666666554332111100000001
Q ss_pred HHHHHHHHHHHHHhhhh----------------------hhhhhHhHHhhcCccceeEeeec-cccHHHHHHHHHHHHHh
Q 000047 1302 EENLLIINRLHQVLRPF----------------------VLRRLKHKVENELPEKIERLVRC-EASAYQKLLMKRVEENL 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPF----------------------LLRRtKkDVekeLP~KiE~vV~c-eLSa~Qk~LYk~Lee~l 1358 (2693)
......+..++.+++.+ +....+......+|........+ .+..+...+ ..+...+
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l-~~~~~al 556 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL-RKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHH
Confidence 11112223333333322 22222222222233221110000 000000000 0000000
Q ss_pred hccCCCCCcchhHHHHHHHHhhCC----ccc------cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCC
Q 000047 1359 GSIGNSKGRSVHNSVMELRNICNH----PYL------SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATD 1426 (2693)
Q Consensus 1359 ~si~~sk~rslln~LmqLRKICnH----PyL------~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atG 1426 (2693)
.... .......+..+...+.. .+. ..........+.. ........++|+..|.++|.+.. ..+
T Consensus 557 ~i~~---~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~--~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 557 IISE---DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIA--LSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHH---HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred hhhc---chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH--hhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 00011111112221110 000 0000000000000 00001124779999999998864 567
Q ss_pred CeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeeccccccc
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAGGVGV 1493 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrAGGeGL 1493 (2693)
+|+||||+++.+++.|.++|... |+.+..+||+++..+|.+++++|+. +..+ |||+|+++++||
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~eGI 708 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGI 708 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS---EEEEECC-----
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEeCchhcCC
Confidence 99999999999999999999876 6667777888999999999999987 6554 799999999999
Q ss_pred CccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1494 NLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1494 NLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
||+.|++||+||++||+..|+||+|| +| .+++.||.|++.++++++.+ ....|..++.+++..
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 44 47788999999999999866 667777777777754
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=379.84 Aligned_cols=436 Identities=15% Similarity=0.153 Sum_probs=231.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
.+...+|++||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ .|+.||.++|.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34446899999999999875 7899999999999999999888876655432 2579999998 788999999999
Q ss_pred HCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHH
Q 000047 1162 WAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1162 waP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
|++ ++++..+.|....+.... ......+|+|+||+.|.+......+ ...+|++|||||||++++..........
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVE---QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHH---HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHH---HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 987 678888888653221110 1113689999999999886655444 5667999999999999877642222211
Q ss_pred hh---------cccccccccccCCCCC-------HHHHHHHhhhccCCCCCC----hhHHHHHhcCcccCCCCCCc-hhh
Q 000047 1239 HY---------QSSHRLLLTGTPLQNN-------LEELWALLNFLLPNIFNS----SEDFSQWFNKPFESNGDNSP-DEA 1297 (2693)
Q Consensus 1239 ~L---------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P~iF~S----~k~F~e~F~kP~e~~g~~s~-~e~ 1297 (2693)
.+ ...++|+|||||..++ +.+|+.++..++...+.. ......++..|......... ...
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 11 3467899999998543 556666666655544322 33444444444221100000 000
Q ss_pred hhHHHHHHHHHHHHHHHhh-----------------------hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHH--
Q 000047 1298 LLSEEENLLIINRLHQVLR-----------------------PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK-- 1352 (2693)
Q Consensus 1298 ~LseEe~lliI~RLhkVLr-----------------------PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk-- 1352 (2693)
.+.. ........+..+.+ .+++++.+......+|.+.+.. .....++.
T Consensus 241 ~fs~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 313 (696)
T 2ykg_A 241 KFKY-IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYT 313 (696)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHH
Confidence 1110 00001111111111 1111222211111222211100 00000000
Q ss_pred -HHHHHhhccCCCCCcchhHHHHHHHHhhCC---ccccchhhhhhhccCCCCCCCh---h----hhcccHHHHHHHHHHH
Q 000047 1353 -RVEENLGSIGNSKGRSVHNSVMELRNICNH---PYLSQLHAEEVDTLIPKHYLPP---I----VRLCGKLEMLDRLLPK 1421 (2693)
Q Consensus 1353 -~Lee~l~si~~sk~rslln~LmqLRKICnH---PyL~~~~~EEid~li~~~~l~~---L----vr~SgKLelLdeLL~k 1421 (2693)
.+..................+..|...+.. ..... ....+...+. ..... + .....|+..|.++|.+
T Consensus 314 ~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 314 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE-IEQDLTQRFE-EKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHH-TTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 000000000000000000011111111000 00000 0000000000 00000 0 0245799999999987
Q ss_pred hh--cCCCeEEEEEcchHHHHHHHHHHhhcC----CeEEEEeC--------CCCHHHHHHHHHHHhC-CCCCceEEEeee
Q 000047 1422 LK--ATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDG--------HTSGGDRGALIDKFNQ-QDSPFFIFLLSI 1486 (2693)
Q Consensus 1422 Lk--atGhKVLIFSQft~tLDILed~L~~rG----ikylRLDG--------STS~eERqeiId~FN~-~dSd~fVfLLST 1486 (2693)
.. ..++++||||+++..++.|.++|...| +++..++| +++.++|.+++++|+. +... +||+|
T Consensus 392 ~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vLVaT 468 (696)
T 2ykg_A 392 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN---ILIAT 468 (696)
T ss_dssp HHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS---CSEEE
T ss_pred HhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc---EEEEe
Confidence 63 357899999999999999999999988 89999955 9999999999999987 6655 68999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
+++++|||++++++||+||++||+..|+||+|| +|. +...+|.|++.+++++.
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999999999999 885 56788889988877664
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=368.60 Aligned_cols=447 Identities=15% Similarity=0.147 Sum_probs=251.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---CCCCEEEEecCc-hHHHH-HHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---DRGPFLVVVPSS-VLPGW-ESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---~~gP~LIVVPtS-LL~QW-~eEfeKwa 1163 (2693)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||+|+. |+.|| .++|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 5899999999999886 778999999999999999988887765432 235689999985 77999 99999999
Q ss_pred CC-CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc------CCCcccccCccEEEEccccccccccc--h-H
Q 000047 1164 PR-IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH------DRPKLSKIQWHYIIIDEGHRIKNASC--K-L 1233 (2693)
Q Consensus 1164 Ps-LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~------Dr~~L~kikWd~VIIDEAHRIKN~sS--K-l 1233 (2693)
+. +.+..+.|........ .......+|+|+||+.|.... ....+....|++|||||||++.+... . .
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 86 8899998875432111 111257899999999998765 33346667899999999999855321 1 1
Q ss_pred HHHHHh-h-------------cccccccccccCCCCC-------HHHHHHHhhhccC-CCCC---ChhHHHHHhcCcccC
Q 000047 1234 NADLKH-Y-------------QSSHRLLLTGTPLQNN-------LEELWALLNFLLP-NIFN---SSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1234 sraLk~-L-------------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P-~iF~---S~k~F~e~F~kP~e~ 1288 (2693)
...+.. + ...++|+|||||..++ ..++..++..+++ .+.. ....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 122211 1 3356899999999863 3445555566666 2222 224555555544321
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHhh-------------hhhhhhhHhHHhhcCcc----------cee---Eeeecc
Q 000047 1289 NGDNSPDEALLSEEENLLIINRLHQVLR-------------PFVLRRLKHKVENELPE----------KIE---RLVRCE 1342 (2693)
Q Consensus 1289 ~g~~s~~e~~LseEe~lliI~RLhkVLr-------------PFLLRRtKkDVekeLP~----------KiE---~vV~ce 1342 (2693)
......................++..+. +++....+......... ... ....+.
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000000000011111111110 00000000000000000 000 000000
Q ss_pred c---cHHHHHHHHHHHHHhhccC---CCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHH
Q 000047 1343 A---SAYQKLLMKRVEENLGSIG---NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD 1416 (2693)
Q Consensus 1343 L---Sa~Qk~LYk~Lee~l~si~---~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLd 1416 (2693)
+ ..+-..+|........... ......+......+...... ....+...... ....+.|+..|.
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~l~~~~~~-----~~~~~~k~~~L~ 387 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFE------NNKMLKRLAEN-----PEYENEKLTKLR 387 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHH------HHHHHHHHHTC-----CC----CSSCSH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHH------HHHHHHHHhhc-----CCCCCHHHHHHH
Confidence 0 0011112222211110000 00000011111111110000 00000000000 001245666777
Q ss_pred HHHHHhhc--C-CCeEEEEEcchHHHHHHHHHHhhc------CCeEEEEeCC--------CCHHHHHHHHHHHhCCCCCc
Q 000047 1417 RLLPKLKA--T-DHRVLFFSTMTRLLDVMEDYLTFK------QYRYLRLDGH--------TSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1417 eLL~kLka--t-GhKVLIFSQft~tLDILed~L~~r------GikylRLDGS--------TS~eERqeiId~FN~~dSd~ 1479 (2693)
++|.+... . +.++||||+++.+++.|.++|... |+++..|||+ ++.++|.+++++|++++.+
T Consensus 388 ~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~- 466 (699)
T 4gl2_A 388 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN- 466 (699)
T ss_dssp HHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C-
T ss_pred HHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc-
Confidence 77766433 2 789999999999999999999987 9999999999 9999999999999887665
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
|||+|+++++|||++++++||+||++||+..|+||+||++|-| ..++.+...++.+...+.....+..++...+
T Consensus 467 --VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 467 --LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp --CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred --EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999987655 3444455666655554444445555555555
Q ss_pred c
Q 000047 1560 T 1560 (2693)
Q Consensus 1560 q 1560 (2693)
.
T Consensus 541 ~ 541 (699)
T 4gl2_A 541 H 541 (699)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=346.61 Aligned_cols=346 Identities=12% Similarity=0.140 Sum_probs=247.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHH--CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFW--APR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKw--aPs 1165 (2693)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... .+++|||||. .|+.||.++|.+| ++.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4899999999999886 46899999999999999988887776543 3479999998 5778999999999 566
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+..+.|......+ .....+|+|+||+.+.+.. .....+|++|||||||++.+. .....+..+ ...+
T Consensus 186 ~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~---~~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~ 254 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (510)
T ss_dssp GGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSC---GGGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCE
T ss_pred cceEEEecCCccccc------cccCCcEEEEeHHHHhhch---hhhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcE
Confidence 777777765432211 2467899999999987632 233347899999999999873 234444566 5678
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
+|+||||| .+...++|.+..++.+.++... ... ..
T Consensus 255 ~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~---------------~~~----~~------------------------- 289 (510)
T 2oca_A 255 KFGLSGSL-RDGKANIMQYVGMFGEIFKPVT---------------TSK----LM------------------------- 289 (510)
T ss_dssp EEEEESCG-GGCSSCHHHHHHHHCSEECCCC---------------CC--------------------------------
T ss_pred EEEEEeCC-CCCcccHHHhHHhhCCeEEeeC---------------HHH----Hh-------------------------
Confidence 89999999 5555567777666655432110 000 00
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
-...+++.....+.+.+........ . ...+.. .+..+
T Consensus 290 --~~~~l~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~---~~~~~------------------------- 326 (510)
T 2oca_A 290 --EDGQVTELKINSIFLRYPDEFTTKL-------K------GKTYQE---EIKII------------------------- 326 (510)
T ss_dssp --------CCEEEEEEEECCHHHHHHH-------T------TCCHHH---HHHHH-------------------------
T ss_pred --hCCcCCCceEEEEeecCChHHhccc-------c------ccchHH---HHHHH-------------------------
Confidence 0002333334444444443322100 0 000000 01111
Q ss_pred hhhcccHHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1405 IVRLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~kLkat-GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.....|...+.+++.++... +.++|||+. +..++.|.++|...+.++..+||.++.++|+++++.|+++... +|
T Consensus 327 -~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vL 401 (510)
T 2oca_A 327 -TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---II 401 (510)
T ss_dssp -HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EE
T ss_pred -hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EE
Confidence 11223566677777766554 456666666 8888889999999989999999999999999999999977655 78
Q ss_pred eee-cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc-cEEEEEEEeCCCHHHHH
Q 000047 1484 LSI-RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1484 LST-rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK-eV~VyRLIT~gSIEEkI 1544 (2693)
|+| .++++|||++.+++||+||++|++..+.|++||++|.|+.+ .|.||.++...++.+++
T Consensus 402 v~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 402 VASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp EEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred EEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 888 99999999999999999999999999999999999999987 69999999977655443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=325.32 Aligned_cols=332 Identities=14% Similarity=0.186 Sum_probs=234.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998875 67899999999999999887776655443445579999998 66788999999886 47
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch---HHHHHHhh-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK---LNADLKHY-Q 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK---lsraLk~L-k 1241 (2693)
+++..+.|........ ..+.....+|+|+||+.+........+...+|++|||||||++.+.... +...+..+ .
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888865433221 2233356799999999998655444555678999999999999764221 11222222 2
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...+++|||||-.. ..++. ..++..|.
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~----------------------------------- 210 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPM----------------------------------- 210 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCE-----------------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCe-----------------------------------
Confidence 45679999998422 11110 00111000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
...+... ....... ..+.+.
T Consensus 211 --------------~~~~~~~-------------------~~~~~~~-----------~~~~~~---------------- 230 (391)
T 1xti_A 211 --------------EIFVDDE-------------------TKLTLHG-----------LQQYYV---------------- 230 (391)
T ss_dssp --------------EEECCCC-------------------CCCCCTT-----------CEEEEE----------------
T ss_pred --------------EEEecCc-------------------cccCccc-----------ceEEEE----------------
Confidence 0000000 0000000 000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
......|...|.+++... .++++||||+....++.+.++|...|+.+..+||+++.++|.++++.|+++...
T Consensus 231 ---~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--- 302 (391)
T 1xti_A 231 ---KLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--- 302 (391)
T ss_dssp ---ECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---
T ss_pred ---EcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---
Confidence 011234777888888764 578999999999999999999999999999999999999999999999887665
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+|++|+++++|||++.+++||+||++|++..|+||+||++|.|+...+.+| ++. .-+++++...+.+
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~--~~~-~~~~~~~~~~~~~ 369 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF--VSD-ENDAKILNDVQDR 369 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE--ECS-HHHHHHHHHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE--Ecc-cchHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999976655443 433 2244555555444
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=348.34 Aligned_cols=355 Identities=15% Similarity=0.177 Sum_probs=216.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcC-CCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEec-CchHHHHH-HH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ-LNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVP-SSVLPGWE-SE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVP-tSLL~QW~-eE 1158 (2693)
+..|++||.++++|++..+.++ .++||+++||+|||++++.++..++..+ ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4689999999999998877665 5589999999999999999998887654 13467999999 56779999 88
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC----CCcccccCccEEEEcccccccccc-chH
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD----RPKLSKIQWHYIIIDEGHRIKNAS-CKL 1233 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D----r~~L~kikWd~VIIDEAHRIKN~s-SKl 1233 (2693)
|..|...+ ..+.+ .......+|+|+||+.|..... ...+....|++|||||||++.+.. ..+
T Consensus 256 ~~~~~~~~--~~~~~-----------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDAR--HKIEG-----------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSE--EECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhh--hhhhc-----------cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 88776532 22222 1123578999999999976432 223445679999999999998753 344
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
...+..+...++|+|||||..+...+++.++. .++.... +..
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~--------------------~~~ 364 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS--------------------LRQ 364 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC--------------------HHH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC--------------------HHH
Confidence 45556677788999999999887776665442 1111000 000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
.+. ...+.+.....+..................... . +.. ..|
T Consensus 365 ~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~---~~~--------- 407 (590)
T 3h1t_A 365 GID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR-----------E---IPD---GEY--------- 407 (590)
T ss_dssp HHH-----------HTSSCCEEEEEEEETTCC------------------------------------------------
T ss_pred Hhh-----------CCccCCcEEEEeeeeeecccccccccccccccc-----------c---ccc---ccC---------
Confidence 000 001111112222221110000000000000000 0 000 000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHh---hcCCCeEEEEEcchHHHHHHHHHHhhcCCe--------EEEEeCCCCH
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKL---KATDHRVLFFSTMTRLLDVMEDYLTFKQYR--------YLRLDGHTSG 1462 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kL---katGhKVLIFSQft~tLDILed~L~~rGik--------ylRLDGSTS~ 1462 (2693)
....+...+....+...+.+.|.++ ...+.|+||||+.+..++.|.++|...+.. +.+++|.++
T Consensus 408 ----~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 408 ----QTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred ----CHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 0000001111122333333333222 144689999999999999999999776543 778999876
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCC---cccEEEEEEE
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 1535 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQ---kKeV~VyRLI 1535 (2693)
++|++++++|++++.++.++|++|+++++|||++.+++||+|+++|++..|+|++||++|+|+ +..+.||.++
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 479999999999887788899999999999999999999999999999999999999999995 4568898887
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=314.92 Aligned_cols=327 Identities=17% Similarity=0.227 Sum_probs=231.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|+.++||+|||++++..+...+........+|||||. .++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 3699999999999886 67899999999999999887776655443344569999998 556889999999986 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh----h-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH----Y- 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~----L- 1240 (2693)
+.+..+.|......... ......+|+|+|++.+........+...+|++|||||||++.+.. ....+.. +
T Consensus 118 ~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~i~~~~~ 192 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLP 192 (400)
T ss_dssp CCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH--HHHHHHHHHTTSC
T ss_pred ceEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHHhCC
Confidence 67777877765543322 124678999999999876554444556678999999999987643 2222322 2
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
.....++||||+-. ++..+ +..++..|+
T Consensus 193 ~~~~~i~lSAT~~~----~~~~~--------------~~~~~~~~~---------------------------------- 220 (400)
T 1s2m_A 193 PTHQSLLFSATFPL----TVKEF--------------MVKHLHKPY---------------------------------- 220 (400)
T ss_dssp SSCEEEEEESCCCH----HHHHH--------------HHHHCSSCE----------------------------------
T ss_pred cCceEEEEEecCCH----HHHHH--------------HHHHcCCCe----------------------------------
Confidence 24567999999621 10000 000110000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
...+...+. . ..+ .+ +.
T Consensus 221 ---------------~~~~~~~~~------------------~---~~~-----------~~-~~--------------- 237 (400)
T 1s2m_A 221 ---------------EINLMEELT------------------L---KGI-----------TQ-YY--------------- 237 (400)
T ss_dssp ---------------EESCCSSCB------------------C---TTE-----------EE-EE---------------
T ss_pred ---------------EEEeccccc------------------c---CCc-----------ee-EE---------------
Confidence 000000000 0 000 00 00
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
..+....|+..|..++... .+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|+++...
T Consensus 238 ---~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-- 310 (400)
T 1s2m_A 238 ---AFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR-- 310 (400)
T ss_dssp ---EECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS--
T ss_pred ---EEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc--
Confidence 0011234677777777653 467999999999999999999999999999999999999999999999887655
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||++.+++||+||++|++..|+||+||++|.|+.. .+|.|+.... ...+...+.+
T Consensus 311 -vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~--~~~~~~i~~~ 376 (400)
T 1s2m_A 311 -TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND--RFNLYKIEQE 376 (400)
T ss_dssp -EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG--HHHHHHHHHH
T ss_pred -EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch--HHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999754 4555666653 3334444433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=318.78 Aligned_cols=321 Identities=15% Similarity=0.216 Sum_probs=228.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+........+|||||+. |..||.++|.+|+. .
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 3699999999999875 678999999999999998877766554334456799999985 66889999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L-ka 1242 (2693)
+.+..+.|.......... .....+|+|+|++.+........+....|++|||||||++.+... .+...+..+ ..
T Consensus 134 ~~~~~~~g~~~~~~~~~~---~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 210 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 210 (410)
T ss_dssp CCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTT
T ss_pred eEEEEEECCCCHHHHHHH---hhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccC
Confidence 566777776544432211 124679999999998776555556667899999999999977542 222333333 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++||||+-. ++..++..+ +..|+.....
T Consensus 211 ~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~~------------------------------- 241 (410)
T 2j0s_A 211 TQVVLISATLPH----EILEMTNKF--------------MTDPIRILVK------------------------------- 241 (410)
T ss_dssp CEEEEEESCCCH----HHHTTGGGT--------------CSSCEEECCC-------------------------------
T ss_pred ceEEEEEcCCCH----HHHHHHHHH--------------cCCCEEEEec-------------------------------
Confidence 567999999821 111111100 0000000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
.....++..... +.
T Consensus 242 ---~~~~~~~~~~~~----------------------------------------------~~----------------- 255 (410)
T 2j0s_A 242 ---RDELTLEGIKQF----------------------------------------------FV----------------- 255 (410)
T ss_dssp ---GGGCSCTTEEEE----------------------------------------------EE-----------------
T ss_pred ---CccccCCCceEE----------------------------------------------EE-----------------
Confidence 000000000000 00
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.+.....|+..|.+++..+. ..++||||+....++.|.++|...|+.+..+||+++.++|.++++.|+++... +
T Consensus 256 -~~~~~~~k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---v 329 (410)
T 2j0s_A 256 -AVEREEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---V 329 (410)
T ss_dssp -EESSTTHHHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---E
T ss_pred -EeCcHHhHHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---E
Confidence 00011237778888887653 56999999999999999999999999999999999999999999999987665 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
||+|+++++|||++.+++||+||++|++..|+||+||++|.|++. .+|.|++...
T Consensus 330 lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 999999999999999999999999999999999999999999764 4555566543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=313.96 Aligned_cols=314 Identities=17% Similarity=0.252 Sum_probs=225.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. .+.++|++++||+|||++++..+..++... ....+|||||. .++.||.+++.+|++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 3799999999998875 336889999999999999887776665332 34468999998 556899999999975 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L-ka 1242 (2693)
+.+..+.|.......... ....+|+|+||+.+........+...+|++|||||||++.+... .+...+..+ ..
T Consensus 103 ~~v~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 178 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKA----LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKD 178 (367)
T ss_dssp CCEEEECTTSCHHHHHHH----HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSS
T ss_pred ceEEEEECCcchHHHHhh----cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCC
Confidence 567777776544332211 13689999999999876555455567889999999999977542 223333333 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++|||||... ++.++ ..++..+
T Consensus 179 ~~~i~~SAT~~~~----~~~~~--------------~~~~~~~------------------------------------- 203 (367)
T 1hv8_A 179 KRILLFSATMPRE----ILNLA--------------KKYMGDY------------------------------------- 203 (367)
T ss_dssp CEEEEECSSCCHH----HHHHH--------------HHHCCSE-------------------------------------
T ss_pred ceEEEEeeccCHH----HHHHH--------------HHHcCCC-------------------------------------
Confidence 5669999999321 11100 0000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
..+..... .. ..+.++
T Consensus 204 --------------~~~~~~~~-------------------~~--------------~~~~~~----------------- 219 (367)
T 1hv8_A 204 --------------SFIKAKIN-------------------AN--------------IEQSYV----------------- 219 (367)
T ss_dssp --------------EEEECCSS-------------------SS--------------SEEEEE-----------------
T ss_pred --------------eEEEecCC-------------------CC--------------ceEEEE-----------------
Confidence 00000000 00 000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|+..|.+++. ..+.++||||+....++.+.++|...|+.+..++|+++.++|.++++.|+++... +
T Consensus 220 --~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 291 (367)
T 1hv8_A 220 --EVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---I 291 (367)
T ss_dssp --ECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---E
T ss_pred --EeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---E
Confidence 0011235666666654 5678999999999999999999999999999999999999999999999887655 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|++|+++++|+|++.+++||+||++|++..+.||+||++|.|+...+.+ |+....
T Consensus 292 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~ 346 (367)
T 1hv8_A 292 LIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRRE 346 (367)
T ss_dssp EEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTS
T ss_pred EEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHH
Confidence 9999999999999999999999999999999999999999998765544 455543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=322.47 Aligned_cols=321 Identities=17% Similarity=0.215 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++.+++. +.++|++++||+|||++++..+...+........+|||||.. +..||.+++.+|+. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 4699999999988875 778999999999999998877776654444456699999985 66889999999863 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L-ka 1242 (2693)
+.+..+.|........ ........+|+|+|++.|........+....|++|||||||++.+.. ..+...+..+ ..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCEEECCCCTTHHHHH--HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred ceEEEEECCcchHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 5666666665444332 22334678999999999887655555566678999999999986543 2333444444 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++|||||- .++..++..+ +..++
T Consensus 215 ~~~i~~SAT~~----~~~~~~~~~~--------------~~~~~------------------------------------ 240 (414)
T 3eiq_A 215 TQVVLLSATMP----SDVLEVTKKF--------------MRDPI------------------------------------ 240 (414)
T ss_dssp CEEEEECSCCC----HHHHHHHTTT--------------CSSCE------------------------------------
T ss_pred CeEEEEEEecC----HHHHHHHHHH--------------cCCCE------------------------------------
Confidence 55689999982 1111111100 00000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+... ..... ...+.++.
T Consensus 241 -------------~~~~~~~--------------------~~~~~-----------~~~~~~~~---------------- 260 (414)
T 3eiq_A 241 -------------RILVKKE--------------------ELTLE-----------GIRQFYIN---------------- 260 (414)
T ss_dssp -------------EECCCCC--------------------CCCTT-----------SCCEEEEE----------------
T ss_pred -------------EEEecCC--------------------ccCCC-----------CceEEEEE----------------
Confidence 0000000 00000 00000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|+..|.+++... .+.++||||+....++.+.++|...++.+..+||.++.++|.++++.|+++... +
T Consensus 261 --~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---v 333 (414)
T 3eiq_A 261 --VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---V 333 (414)
T ss_dssp --CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------C
T ss_pred --eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---E
Confidence 001123778888888754 467999999999999999999999999999999999999999999999876654 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
||+|+++++|||++.+++||+||++||+..|+||+||++|.|+... +|.|++..
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 9999999999999999999999999999999999999999997654 45556654
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=302.32 Aligned_cols=314 Identities=16% Similarity=0.206 Sum_probs=216.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.++.. +.++|+.++||+|||++++..+... ...+|||||. .++.||.+++.+|+. +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998875 6789999999999999887666542 3458999998 566899999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSS 1243 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~ 1243 (2693)
+.+..+.|......... .....+|+|+||+.+.+......+...+|++|||||||++.+... .+...+..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQIN----RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR 160 (337)
T ss_dssp CCEEEECTTSCHHHHHH----HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTC
T ss_pred CcEEEEECCcchHHHHh----hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcc
Confidence 67777777654432221 113589999999999875544455567799999999999976442 233333444433
Q ss_pred -ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1244 -HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1244 -~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
..+++||||-. ++..++ ..++..+... .
T Consensus 161 ~~~~~~SAT~~~----~~~~~~--------------~~~~~~~~~~--------------------------------~- 189 (337)
T 2z0m_A 161 KITGLFSATIPE----EIRKVV--------------KDFITNYEEI--------------------------------E- 189 (337)
T ss_dssp SEEEEEESCCCH----HHHHHH--------------HHHSCSCEEE--------------------------------E-
T ss_pred cEEEEEeCcCCH----HHHHHH--------------HHhcCCceee--------------------------------e-
Confidence 34578999921 111111 1111100000 0
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
....++......+.+.
T Consensus 190 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 205 (337)
T 2z0m_A 190 ----ACIGLANVEHKFVHVK------------------------------------------------------------ 205 (337)
T ss_dssp ----CSGGGGGEEEEEEECS------------------------------------------------------------
T ss_pred ----cccccCCceEEEEEeC------------------------------------------------------------
Confidence 0000000000000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.+...+...+. ...+.++||||+....++.+.++|. .+..++|.++..+|.++++.|+++... +
T Consensus 206 -------~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 269 (337)
T 2z0m_A 206 -------DDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---M 269 (337)
T ss_dssp -------SSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---E
T ss_pred -------hHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---E
Confidence 00000111222 2457899999999999999999887 678999999999999999999987665 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
|++|+++++|||++.+++||+||++|++..+.|++||++|.|++..+.+|.. .+..+.+.|.+..
T Consensus 270 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888777765 4444555554443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=306.15 Aligned_cols=314 Identities=15% Similarity=0.192 Sum_probs=220.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. .++.++|++++||+|||++++..+...+........+|||||.. ++.||.+++.+++. .
T Consensus 26 ~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998864 12378999999999999998877766554444556799999986 66889999999864 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHH-Hhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADL-KHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraL-k~Lk- 1241 (2693)
+.+..+.+..... ......+|+|+|++.+........+...+|++|||||||++.+... .....+ ..+.
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CCEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eeEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 5566665543221 1234789999999999876555555667899999999999876322 122222 2222
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
..+.++|||||-. .+..++ .++.
T Consensus 177 ~~~~i~~SAT~~~----~~~~~~---------------~~~~-------------------------------------- 199 (395)
T 3pey_A 177 DTQLVLFSATFAD----AVRQYA---------------KKIV-------------------------------------- 199 (395)
T ss_dssp TCEEEEEESCCCH----HHHHHH---------------HHHS--------------------------------------
T ss_pred CcEEEEEEecCCH----HHHHHH---------------HHhC--------------------------------------
Confidence 3466899999821 111110 0000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
+...... .... ..... ...+.+.
T Consensus 200 ----------~~~~~~~--~~~~---------------~~~~~--------------~~~~~~~---------------- 222 (395)
T 3pey_A 200 ----------PNANTLE--LQTN---------------EVNVD--------------AIKQLYM---------------- 222 (395)
T ss_dssp ----------CSCEEEC--CCGG---------------GCSCT--------------TEEEEEE----------------
T ss_pred ----------CCCeEEE--cccc---------------ccccc--------------cccEEEE----------------
Confidence 0000000 0000 00000 0000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.......|+..|..++... .+.++||||+....++.+.++|...|+.+..+||.++.++|.++++.|+++...
T Consensus 223 --~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--- 295 (395)
T 3pey_A 223 --DCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK--- 295 (395)
T ss_dssp --ECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---
T ss_pred --EcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---
Confidence 0001123667777776643 468999999999999999999999999999999999999999999999987665
Q ss_pred EEeeecccccccCccccCEEEEecCCC------CccchhhhhhhhcccCCcccEEEE
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppW------NP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|+++++|||++.+++||+||++| ++..|+||+||++|.|++..+.+|
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 799999999999999999999999999 999999999999999976554443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=317.57 Aligned_cols=319 Identities=15% Similarity=0.199 Sum_probs=118.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999999886 67899999999999999776666554444445579999998 566889999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
+.+..+.|.......... ....+|+|+|++.+........+...+|++|||||||++.+.. ..+...+..+. .
T Consensus 118 ~~~~~~~g~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG----LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193 (394)
T ss_dssp CCEEEECSSCCHHHHHHH----HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred eeEEEEeCCCchHHHHhh----cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCC
Confidence 677788876544322211 1267999999999977655555666789999999999985543 23334444443 4
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.++++|||||-. ++..++ ..++..|.
T Consensus 194 ~~~i~~SAT~~~----~~~~~~--------------~~~~~~~~------------------------------------ 219 (394)
T 1fuu_A 194 TQVVLLSATMPN----DVLEVT--------------TKFMRNPV------------------------------------ 219 (394)
T ss_dssp CEEEEECSSCCH----HHHHHH--------------HHHCCSCE------------------------------------
T ss_pred ceEEEEEEecCH----HHHHHH--------------HHhcCCCe------------------------------------
Confidence 567999999831 111100 01111100
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+ ..... ....+ .+ -+..
T Consensus 220 -------------~~~~--~~~~~---~~~~~----------------------~~----~~~~---------------- 239 (394)
T 1fuu_A 220 -------------RILV--KKDEL---TLEGI----------------------KQ----FYVN---------------- 239 (394)
T ss_dssp -------------EEEE--CC-----------------------------------------------------------
T ss_pred -------------EEEe--cCccc---cCCCc----------------------eE----EEEE----------------
Confidence 0000 00000 00000 00 0000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|...|.+++... .++++||||+....++.+.++|...++.+..++|+++.++|.++++.|+++... +
T Consensus 240 --~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 312 (394)
T 1fuu_A 240 --VEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---I 312 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---E
Confidence 000012455555665543 357999999999999999999999999999999999999999999999876544 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
|++|+++++|||++.+++||+||++|++..+.|++||++|.|++..+.+ |++..
T Consensus 313 lv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 9999999999999999999999999999999999999999997665444 44443
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=314.28 Aligned_cols=210 Identities=19% Similarity=0.214 Sum_probs=159.2
Q ss_pred CccceeEeeeccccHHHHHHHHHHHHH----hh-ccCCC--CC----cchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1331 LPEKIERLVRCEASAYQKLLMKRVEEN----LG-SIGNS--KG----RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1331 LP~KiE~vV~ceLSa~Qk~LYk~Lee~----l~-si~~s--k~----rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
-|.+.|+++.|.|+.+|+.+|+.+... +. ..... .. ..+.+.+|+||++||||||+...... ......
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p-~~~~~~ 98 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMP-KSLITR 98 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCC-SCSCST
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCC-cccccc
Confidence 389999999999999999999988532 11 11111 11 25689999999999999998311100 001111
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.....+++.||||.+|+++|..+++.+|||||||||++++|+|++||..+|+.|+|+||++... +++ ..+..+
T Consensus 99 ~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~~~~~ 171 (328)
T 3hgt_A 99 DVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------ANDFSC 171 (328)
T ss_dssp THHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSE
T ss_pred chhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cccCCc
Confidence 1134578899999999999999999999999999999999999999999999999999996543 222 124568
Q ss_pred eEEEeeecccccccC-----ccccCEEEEecCCCCccch-hhhhhhhccc--CCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1480 FIFLLSIRAGGVGVN-----LQAADTVIIFDTDWNPQVD-LQAQARAHRI--GQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLN-----LQaADtVIiyDppWNP~~d-iQAIGRAHRI--GQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
++||+ |.+||.|+| |..||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++.+|||+.++..-.
T Consensus 172 ~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 172 TVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 88887 678888886 8999999999999999998 9999999999 78999999999999999999988643
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=300.79 Aligned_cols=320 Identities=18% Similarity=0.256 Sum_probs=221.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC------------------CCCEEEEecC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND------------------RGPFLVVVPS- 1149 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~------------------~gP~LIVVPt- 1149 (2693)
..|+|+|.+++..+.. +.+.|+..+||+|||++++..+...+..... ...+|||||+
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 4799999999987764 7889999999999999877655443322211 1348999998
Q ss_pred chHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1150 SVLPGWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1150 SLL~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.|+.||.+++.+|+. .+++..++|......... ....+.+|+|+|++.|........+....+++|||||||++.
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 566889999998864 567777777654433221 123568999999999987655555566678999999999986
Q ss_pred ccc--chHHHHHHh--hc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhH
Q 000047 1228 NAS--CKLNADLKH--YQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300 (2693)
Q Consensus 1228 N~s--SKlsraLk~--Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Ls 1300 (2693)
... ..+...+.. +. ....++||||+-. ++..++. .++..++
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~-------------- 236 (417)
T 2i4i_A 189 DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYI-------------- 236 (417)
T ss_dssp HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCE--------------
T ss_pred ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCE--------------
Confidence 543 122222221 11 2456899999821 1111110 0110000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhh
Q 000047 1301 EEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNIC 1380 (2693)
Q Consensus 1301 eEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKIC 1380 (2693)
. +.+.. . ... .. ..
T Consensus 237 -----------------------------------~--~~~~~--~---------------~~~-~~-----------~i 250 (417)
T 2i4i_A 237 -----------------------------------F--LAVGR--V---------------GST-SE-----------NI 250 (417)
T ss_dssp -----------------------------------E--EEEC---------------------C-CS-----------SE
T ss_pred -----------------------------------E--EEeCC--C---------------CCC-cc-----------Cc
Confidence 0 00000 0 000 00 00
Q ss_pred CCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCC
Q 000047 1381 NHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT 1460 (2693)
Q Consensus 1381 nHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGST 1460 (2693)
.+.+. .+....|...|.+++... ..+.++||||+....++.+.++|...|+.+..+||.+
T Consensus 251 ~~~~~-------------------~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~ 310 (417)
T 2i4i_A 251 TQKVV-------------------WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDR 310 (417)
T ss_dssp EEEEE-------------------ECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred eEEEE-------------------EeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCC
Confidence 00000 011234777888888764 3578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1461 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1461 S~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+.++|.++++.|+++... +||+|+++++|||++.+++||+||++|++..|+||+||++|.|+.. .+|.|+...
T Consensus 311 ~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 311 SQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp CHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 999999999999887765 8999999999999999999999999999999999999999999764 445555543
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=305.70 Aligned_cols=316 Identities=17% Similarity=0.220 Sum_probs=223.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-----CCCCEEEEecCc-hHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-----DRGPFLVVVPSS-VLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-----~~gP~LIVVPtS-LL~QW~eEfeKw 1162 (2693)
..++|+|.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |..||.+++.+|
T Consensus 77 ~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 4699999999998864 789999999999999988766654443322 134589999985 568899999999
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. .+++.+++|........ .....+.+|+|+|++.|........+...++++|||||||+|.+.. ..+.+.+.
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~ 229 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMT 229 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred hccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHH
Confidence 75 35666666654433221 1223578999999999987665555666788999999999997754 23334444
Q ss_pred hh---cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1239 HY---QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1239 ~L---ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
.+ .....+++|||+- .++..++..
T Consensus 230 ~~~~~~~~q~l~~SAT~~----~~~~~~~~~------------------------------------------------- 256 (434)
T 2db3_A 230 HVTMRPEHQTLMFSATFP----EEIQRMAGE------------------------------------------------- 256 (434)
T ss_dssp CTTSCSSCEEEEEESCCC----HHHHHHHHT-------------------------------------------------
T ss_pred hcCCCCCceEEEEeccCC----HHHHHHHHH-------------------------------------------------
Confidence 33 2355689999972 111111100
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
| +..... +.+.. ..... ..+ .+-+.
T Consensus 257 --~------------l~~~~~--i~~~~-----------------~~~~~-~~i-----------~~~~~---------- 281 (434)
T 2db3_A 257 --F------------LKNYVF--VAIGI-----------------VGGAC-SDV-----------KQTIY---------- 281 (434)
T ss_dssp --T------------CSSCEE--EEESS-----------------TTCCC-TTE-----------EEEEE----------
T ss_pred --h------------ccCCEE--EEecc-----------------ccccc-ccc-----------ceEEE----------
Confidence 0 000000 00000 00000 000 00000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
.+....|...|.++|... +.++||||+....++.|.++|...|+.+..+||+++..+|.+++++|+++
T Consensus 282 ---------~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 282 ---------EVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp ---------ECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred ---------EeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 011234677777777653 34599999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEe
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 1536 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT 1536 (2693)
... +||+|+++++|||++.+++||+||++|++..|+||+||++|.|++..+ +.|++
T Consensus 350 ~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~ 405 (434)
T 2db3_A 350 SMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFD 405 (434)
T ss_dssp SCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred CCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEe
Confidence 765 899999999999999999999999999999999999999999976544 44455
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=293.85 Aligned_cols=331 Identities=14% Similarity=0.176 Sum_probs=224.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwa---P 1164 (2693)
..+++||.+++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. ++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 4799999999988775 13478999999999999998776665554444444699999986 5577888887765 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHHHHH-Hhh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLNADL-KHY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKlsraL-k~L 1240 (2693)
.+.+....+..... .......+|+|+|++.+...... ..+...+|++|||||||++.... ......+ ..+
T Consensus 124 ~~~~~~~~~~~~~~------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 124 ELKLAYAVRGNKLE------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp TCCEEEECTTCCCC------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred cceEEEeecCcchh------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 66777666653321 11234679999999999775432 34445678999999999986422 2222222 333
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....++|||||-. +++.++..+ +
T Consensus 198 ~~~~~~i~~SAT~~~----~~~~~~~~~--------------~------------------------------------- 222 (412)
T 3fht_A 198 PRNCQMLLFSATFED----SVWKFAQKV--------------V------------------------------------- 222 (412)
T ss_dssp CTTCEEEEEESCCCH----HHHHHHHHH--------------S-------------------------------------
T ss_pred CCCceEEEEEeecCH----HHHHHHHHh--------------c-------------------------------------
Confidence 3 3456899999831 111111100 0
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+......+... . .... ...+.++.
T Consensus 223 ------------~~~~~~~~~~~-------------------~-~~~~-----------~~~~~~~~------------- 246 (412)
T 3fht_A 223 ------------PDPNVIKLKRE-------------------E-ETLD-----------TIKQYYVL------------- 246 (412)
T ss_dssp ------------SSCEEECCCGG-------------------G-SSCT-----------TEEEEEEE-------------
T ss_pred ------------CCCeEEeeccc-------------------c-cccc-----------CceEEEEE-------------
Confidence 00000000000 0 0000 00000000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
......|+..|.+++... .+.++||||+....++.|.++|...++.+..++|.++.++|.++++.|+++...
T Consensus 247 -----~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~- 318 (412)
T 3fht_A 247 -----CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK- 318 (412)
T ss_dssp -----CSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS-
T ss_pred -----cCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc-
Confidence 001123677777777654 467999999999999999999999999999999999999999999999987765
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCc------cchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||++++++||+||++|++ ..|+||+||++|.|+...+ |.|+.. .-+..++...+.+
T Consensus 319 --vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 319 --VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp --EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHH
T ss_pred --EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHH
Confidence 79999999999999999999999999987 5899999999999965444 434433 2334555555444
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=300.42 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=221.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|+|||.+++.+++. +.++|+..+||+|||+.++..+. .. .+.+|||+|. +|+.+|.+++..+. +.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~~----~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--LL----NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--HS----SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--Hh----CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 4789999999998875 67899999999999987754443 11 3568999998 66688999998874 56
Q ss_pred EEEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHH----HHHh
Q 000047 1168 KIVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNA----DLKH 1239 (2693)
Q Consensus 1168 VIvy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---Klsr----aLk~ 1239 (2693)
+..+.+...... ......+..+..+|+++|++.+........+...++++|||||||++..+.. ..+. .+..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 666666543221 1112334456799999999999653322345557899999999999976542 1222 2334
Q ss_pred hcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1240 YQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1240 Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 45567899999996444444444333221111000 00
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
..|.. .+.+
T Consensus 209 ----------~r~~l-~~~v------------------------------------------------------------ 217 (523)
T 1oyw_A 209 ----------DRPNI-RYML------------------------------------------------------------ 217 (523)
T ss_dssp ----------CCTTE-EEEE------------------------------------------------------------
T ss_pred ----------CCCce-EEEE------------------------------------------------------------
Confidence 00000 0000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.....++..|.++|... .+.++||||..+..++.+.++|...|+.+..+||+++.++|.++++.|.+++..
T Consensus 218 ------~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~- 288 (523)
T 1oyw_A 218 ------MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ- 288 (523)
T ss_dssp ------EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS-
T ss_pred ------EeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe-
Confidence 00012445555666543 578999999999999999999999999999999999999999999999987765
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|.++|+|||++++++||+||++|++..|.|++||++|.|+...+.+|
T Consensus 289 --vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 289 --IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp --EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred --EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 799999999999999999999999999999999999999999987665554
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=286.21 Aligned_cols=318 Identities=16% Similarity=0.224 Sum_probs=220.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sL 1166 (2693)
.+++|||.+++..++. +.+.|+..+||+|||+.++..+.++. ...+.+|||+|+ .|+.||.++|.+|+. ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4688999999988764 67899999999999997766655544 234568999998 556889999999986 77
Q ss_pred cEEEEcCChHHHHH-HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-------------cch
Q 000047 1167 HKIVYCGPPEERRR-LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-------------SCK 1232 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~-l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-------------sSK 1232 (2693)
++..++|......+ .....+..+..+|+|+|++.+..... .+...++++|||||||++..+ ...
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~--~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE--KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH--HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH--HhccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 88888887644211 11123334568999999999976443 355568999999999987432 222
Q ss_pred -HHHHHHhh------------cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhh
Q 000047 1233 -LNADLKHY------------QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALL 1299 (2693)
Q Consensus 1233 -lsraLk~L------------ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~L 1299 (2693)
+...+..+ .....+++|||+....+.+.+ +..++..... .
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~--~--------- 223 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVG--R--------- 223 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSS--C---------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcC--c---------
Confidence 23333333 345668999997544322111 0000000000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHh
Q 000047 1300 SEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNI 1379 (2693)
Q Consensus 1300 seEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKI 1379 (2693)
....+....+.
T Consensus 224 ----------------------------~~~~~~~i~~~----------------------------------------- 234 (414)
T 3oiy_A 224 ----------------------------LVSVARNITHV----------------------------------------- 234 (414)
T ss_dssp ----------------------------CCCCCCSEEEE-----------------------------------------
T ss_pred ----------------------------cccccccchhe-----------------------------------------
Confidence 00000000000
Q ss_pred hCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEE-EEeC
Q 000047 1380 CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDG 1458 (2693)
Q Consensus 1380 CnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikyl-RLDG 1458 (2693)
+....|...|.++|.. .+.++||||+....++.|.++|...|+.+. .+||
T Consensus 235 --------------------------~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~ 285 (414)
T 3oiy_A 235 --------------------------RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE 285 (414)
T ss_dssp --------------------------EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSC
T ss_pred --------------------------eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcC
Confidence 0011355666666665 358999999999999999999999999998 8888
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEee----ecccccccCccc-cCEEEEecCC--CCccchhhhhhhhcccCCc--ccE
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTD--WNPQVDLQAQARAHRIGQK--RDV 1529 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDpp--WNP~~diQAIGRAHRIGQk--KeV 1529 (2693)
. +|. ++.|+++..+ +||+ |+++++|||+++ +++||+||++ |++..|+|++||++|.|+. +..
T Consensus 286 ~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g 356 (414)
T 3oiy_A 286 F----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKG 356 (414)
T ss_dssp H----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCE
T ss_pred c----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcce
Confidence 3 454 9999987765 6777 999999999999 9999999999 9999999999999999986 566
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHH
Q 000047 1530 LVLRFETVQTVEEQVRASAEHKLG 1553 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIleraekKl~ 1553 (2693)
.+|.|+ -|..++...++.+.
T Consensus 357 ~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 357 VSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEEC----CCHHHHHHHHHHHH
T ss_pred EEEEEE----ccHHHHHHHHHHhc
Confidence 666666 24455555555544
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=293.40 Aligned_cols=340 Identities=15% Similarity=0.208 Sum_probs=220.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+..... ...+|||||+ .|+.||.++|.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 4699999999987762 136678999999999999987776665544321 2358999998 55688999999864
Q ss_pred ------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHH
Q 000047 1164 ------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLN 1234 (2693)
Q Consensus 1164 ------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Kls 1234 (2693)
+.+.+..+.|........ ..+.....+|+|+|++.|....... ......+++|||||||+|..... .+.
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~--~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~ 197 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 197 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred hhcccccceEEEEEECCccHHHHH--HHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHH
Confidence 445666666665443322 1223347899999999997644322 22334689999999999976542 222
Q ss_pred HHHHhhc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ADLKHYQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 raLk~Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
..+..+. ....++||||+-. .+.+ ++..
T Consensus 198 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~---------------------------------------- 233 (579)
T 3sqw_A 198 TISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANN---------------------------------------- 233 (579)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTT----------------------------------------
T ss_pred HHHHHhhhhhcccccCceEEEEeccCCh-HHHH---HHHH----------------------------------------
Confidence 2222221 3357999999721 1111 0000
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
.+.......+... ...... .. ....+.+..
T Consensus 234 -----------------------~l~~~~~~~~~~~-------------------~~~~~~-~~-------~~i~~~~~~ 263 (579)
T 3sqw_A 234 -----------------------IMNKKECLFLDTV-------------------DKNEPE-AH-------ERIDQSVVI 263 (579)
T ss_dssp -----------------------TCCSSEEEEEESS-------------------CSSSCS-SC-------TTEEEEEEE
T ss_pred -----------------------HcCCCceEEEeec-------------------Cccccc-cc-------cccceEEEE
Confidence 0000000000000 000000 00 000000000
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhc---CCeEEEEeCCCC
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTS 1461 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~r---GikylRLDGSTS 1461 (2693)
. .. ....+...+..++..+. ..+.++||||.....++.+.++|... ++.+..+||.++
T Consensus 264 ~-----------~~------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 264 S-----------EK------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp E-----------SS------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred e-----------cc------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 0 00 00112333333333333 45789999999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+|.+++++|+.+... +||+|+++++|||++.+++||+||++|++..|+|++||++|.|+...+.+ |++.. |
T Consensus 327 ~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e 399 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--E 399 (579)
T ss_dssp HHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--G
T ss_pred HHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE--EEccc--H
Confidence 99999999999887654 89999999999999999999999999999999999999999997554443 44443 4
Q ss_pred HHHHHHHHH
Q 000047 1542 EQVRASAEH 1550 (2693)
Q Consensus 1542 EkIleraek 1550 (2693)
...+..++.
T Consensus 400 ~~~~~~l~~ 408 (579)
T 3sqw_A 400 LPFVRELED 408 (579)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=289.17 Aligned_cols=339 Identities=15% Similarity=0.208 Sum_probs=217.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||+|+ .|..||.++|.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 4699999999988762 135678999999999999988776665544332 2358999998 55688999998863
Q ss_pred ------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHH
Q 000047 1164 ------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLN 1234 (2693)
Q Consensus 1164 ------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Kls 1234 (2693)
+...+..+.|........ ..+.....+|+|+|++.|....... ......+++|||||||++..... .+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~ 248 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 248 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHH--HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHH
Confidence 345566666655433322 1222347899999999997644322 12234589999999999876541 222
Q ss_pred HHHHhhc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ADLKHYQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 raLk~Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
..+..+. ....++||||+-. .+.+ ++.. +
T Consensus 249 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~---------------~------------------------ 285 (563)
T 3i5x_A 249 TISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANN---------------I------------------------ 285 (563)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTT---------------T------------------------
T ss_pred HHHHhhhhccccCccCceEEEEEccCCH-HHHH---HHHH---------------h------------------------
Confidence 2222221 2347999999721 1111 0000 0
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
+.......+... ...... .. ....+.+..
T Consensus 286 ------------------------~~~~~~~~~~~~-------------------~~~~~~-~~-------~~~~~~~~~ 314 (563)
T 3i5x_A 286 ------------------------MNKKECLFLDTV-------------------DKNEPE-AH-------ERIDQSVVI 314 (563)
T ss_dssp ------------------------CCSSEEEEEESS-------------------CSSSCS-SC-------TTEEEEEEE
T ss_pred ------------------------cCCCceEEEecc-------------------CCCCcc-cc-------ccCceEEEE
Confidence 000000000000 000000 00 000000000
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhc---CCeEEEEeCCCC
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTS 1461 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~r---GikylRLDGSTS 1461 (2693)
. .. ........+..++..+. ..+.++||||.....++.+.++|... ++.+..+||+++
T Consensus 315 ~-----------~~------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 315 S-----------EK------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 377 (563)
T ss_dssp E-----------SS------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred C-----------ch------hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCC
Confidence 0 00 00011223333333332 45789999999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+|..+++.|+++... +||+|+++++|||++++++||+||++|++..|+|++||++|.|+...+ +.|++.. |
T Consensus 378 ~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e 450 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--E 450 (563)
T ss_dssp HHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--G
T ss_pred HHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEEEchh--H
Confidence 99999999999887654 899999999999999999999999999999999999999999965444 4445543 3
Q ss_pred HHHHHHHH
Q 000047 1542 EQVRASAE 1549 (2693)
Q Consensus 1542 EkIlerae 1549 (2693)
...+..+.
T Consensus 451 ~~~~~~l~ 458 (563)
T 3i5x_A 451 LPFVRELE 458 (563)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=293.38 Aligned_cols=311 Identities=14% Similarity=0.116 Sum_probs=215.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|+|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+ +|+.||.+.|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4799999999998875 778999999999999876544432 24568999998 6678899999998 566
Q ss_pred EEEEcCChHH--HHHHHHhhh--hcCCccEEEEcHHHHHhc---cC--CCcccccCccEEEEccccccccccc-------
Q 000047 1168 KIVYCGPPEE--RRRLFKEKI--VHQKFNVLLTTYEYLMNK---HD--RPKLSKIQWHYIIIDEGHRIKNASC------- 1231 (2693)
Q Consensus 1168 VIvy~Gs~~e--Rk~l~ke~i--~~~kfdVVITTYE~Lik~---~D--r~~L~kikWd~VIIDEAHRIKN~sS------- 1231 (2693)
+..+.|.... +...+. .+ ....++|+++|++.|... .+ ...+...++.+|||||||++..+..
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 7777665432 222221 12 356899999999988531 00 0122334789999999999865431
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
.+......+....+|+|||||-.....++...|.+-.+..+..
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~------------------------------------- 232 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA------------------------------------- 232 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-------------------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-------------------------------------
Confidence 2222233455667899999994332233222221110000000
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
....|.....+....
T Consensus 233 ----------------~~~r~nl~~~v~~~~------------------------------------------------- 247 (591)
T 2v1x_A 233 ----------------SFNRPNLYYEVRQKP------------------------------------------------- 247 (591)
T ss_dssp ----------------CCCCTTEEEEEEECC-------------------------------------------------
T ss_pred ----------------CCCCcccEEEEEeCC-------------------------------------------------
Confidence 000000000000000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
.....++..|.++|... ..+.++||||..+..++.|.++|...|+.+..+||+++.++|.++++.
T Consensus 248 --------------~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 312 (591)
T 2v1x_A 248 --------------SNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRK 312 (591)
T ss_dssp --------------SSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 00011334444444332 257899999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
|..+... +||+|.++|+|||++++++||+||+++++..|.|++||++|.|+...+.+|
T Consensus 313 F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 313 WSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9987765 899999999999999999999999999999999999999999987666555
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=288.48 Aligned_cols=314 Identities=15% Similarity=0.197 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHH---CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFW---AP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKw---aP 1164 (2693)
..++++|.+++.+++. ..+.+.|++.+||+|||++++..+...+........+|||+|...| .||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4789999999988864 2347889999999999999776665544433333468999998654 6776666554 56
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc--hHHHHHH-hh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC--KLNADLK-HY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk-~L 1240 (2693)
.+.+.+..+..... .......+|+|+|++.+...... ..+...++++|||||||++..... .....+. .+
T Consensus 191 ~~~~~~~~~~~~~~------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLE------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCC------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCcccc------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 67777766653221 11124568999999999775532 234446789999999999865222 1222222 22
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....+++||||- .+++.+...+
T Consensus 265 ~~~~~~i~~SAT~~----~~~~~~~~~~---------------------------------------------------- 288 (479)
T 3fmp_B 265 PRNCQMLLFSATFE----DSVWKFAQKV---------------------------------------------------- 288 (479)
T ss_dssp CTTSEEEEEESCCC----HHHHHHHHHH----------------------------------------------------
T ss_pred CccceEEEEeCCCC----HHHHHHHHHH----------------------------------------------------
Confidence 2 345689999983 1222111110
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+|......+.. .... ... +.+ .++.
T Consensus 289 -----------~~~~~~i~~~~----~~~~-~~~----------------------~~~----~~~~------------- 313 (479)
T 3fmp_B 289 -----------VPDPNVIKLKR----EEET-LDT----------------------IKQ----YYVL------------- 313 (479)
T ss_dssp -----------SSSEEEEEEC-----------------------------------------------------------
T ss_pred -----------cCCCeEEeccc----cccC-cCC----------------------ceE----EEEE-------------
Confidence 11111110000 0000 000 000 0000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
......|+..|.+++... .+.++||||+....++.|..+|...++.+..+||.++..+|..+++.|+++...
T Consensus 314 -----~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~- 385 (479)
T 3fmp_B 314 -----CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK- 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc-
Confidence 000122555555555533 356899999999999999999999999999999999999999999999887655
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCc------cchhhhhhhhcccCCcccEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP------~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|+++++|||++.+++||+||++|++ ..|+||+||++|.|+...+.+
T Consensus 386 --iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 386 --VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ----------------------------------------------------------
T ss_pred --EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 79999999999999999999999999876 689999999999996554433
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=299.82 Aligned_cols=310 Identities=15% Similarity=0.203 Sum_probs=218.9
Q ss_pred CCcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
+.+++|||.+++.+++..+.++. ++||+++||+|||++++..+..+... .+.+|||||+. |..||.++|.+++.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHhh
Confidence 35789999999999988766665 89999999999999987665544432 34689999986 55789999999886
Q ss_pred C--CcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 R--IHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 s--LkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
. +++..+.+.. ..+...+ ..+..+..+|+|+|++.+.+. +...+|++|||||||++. ......++.+
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~-----~~~~~l~lvIiDEaH~~g---~~~~~~l~~l 748 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFG---VRHKERIKAM 748 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSC---HHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC-----ccccccceEEEechHhcC---hHHHHHHHHh
Confidence 4 5667776643 2333332 334556799999999988652 334578999999999974 3445556655
Q ss_pred cc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 QS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 ka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.. .++|+|||||+.+.+...+.-+ .++.
T Consensus 749 ~~~~~vl~lSATp~p~~l~~~~~~~--~~~~------------------------------------------------- 777 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTLNMAMSGM--RDLS------------------------------------------------- 777 (1151)
T ss_dssp HTTSEEEEEESSCCCHHHHHHHTTT--SEEE-------------------------------------------------
T ss_pred cCCCCEEEEcCCCChhhHHHHHhcC--CCce-------------------------------------------------
Confidence 44 5689999999754322111000 0000
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+....|.... .+.
T Consensus 778 -------~i~~~~~~r~-~i~----------------------------------------------------------- 790 (1151)
T 2eyq_A 778 -------IIATPPARRL-AVK----------------------------------------------------------- 790 (1151)
T ss_dssp -------ECCCCCCBCB-CEE-----------------------------------------------------------
T ss_pred -------EEecCCCCcc-ccE-----------------------------------------------------------
Confidence 0000000000 000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
..+....+...+..++..+ ..+.++||||+....++.+.++|... ++.+..+||.++..+|++++++|+++..
T Consensus 791 ----~~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~ 865 (1151)
T 2eyq_A 791 ----TFVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 865 (1151)
T ss_dssp ----EEEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSC
T ss_pred ----EEEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 0000001122223333333 35789999999999999999999877 8999999999999999999999998766
Q ss_pred CceEEEeeecccccccCccccCEEEEecC-CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDT-DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDp-pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+ +||+|+++++|||++.+++||+++. .|++..+.|++||++|.|+.. ++|.++..
T Consensus 866 ~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~ 921 (1151)
T 2eyq_A 866 N---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 921 (1151)
T ss_dssp C---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECC
T ss_pred c---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECC
Confidence 5 7999999999999999999999999 589999999999999999654 44545554
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=290.81 Aligned_cols=362 Identities=13% Similarity=0.086 Sum_probs=222.3
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
.+.+|++||.+++.++.. +.+.|++.+||+|||+++...+...+.. .+.+||++|. .|..||..+|.+++.
T Consensus 83 ~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 346899999999998765 7789999999999999987666655532 3568999998 666889999999886
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
.+.++.|.... ....+|+|+|++.|.....+......+|++|||||||++.+.. ..+...+..+. .
T Consensus 155 -~vglltGd~~~----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 -DVGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp -CEEEECSSCEE----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred -CEEEEeCCCcc----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 56667775421 2367899999999876543333444578999999999998753 22333444443 4
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.|+||||+- +..+ |..|+...... +..+-
T Consensus 224 ~~il~LSATi~--n~~e------------------~a~~l~~~~~~----------------------------~~~vi- 254 (1010)
T 2xgj_A 224 VRYVFLSATIP--NAME------------------FAEWICKIHSQ----------------------------PCHIV- 254 (1010)
T ss_dssp CEEEEEECCCT--THHH------------------HHHHHHHHHTS----------------------------CEEEE-
T ss_pred CeEEEEcCCCC--CHHH------------------HHHHHHhhcCC----------------------------CeEEE-
Confidence 56799999952 2233 33333210000 00000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
....-|...++.+...-.. .+..............+........+. .. +......+....
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~----~~~~~~~~~g~~ 314 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD-----------GIYLVVDEKSTFREENFQKAMASISNQ-IG----DDPNSTDSRGKK 314 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS-----------CCEEEECTTCCBCHHHHHHHHHTCC---------------------
T ss_pred ----ecCCCcccceEEEEecCCc-----------ceeeeeccccccchHHHHHHHHHHhhh-hc----cccccccccccc
Confidence 0000111111111100000 000000000000000000000000000 00 000000000000
Q ss_pred Chhhhc---cc-HHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCe-------------------------
Q 000047 1403 PPIVRL---CG-KLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR------------------------- 1452 (2693)
Q Consensus 1403 ~~Lvr~---Sg-KLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGik------------------------- 1452 (2693)
....+. .+ ....+..++..+.. .+.++||||..+..++.+..+|...++.
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 394 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 394 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhc
Confidence 000000 00 02233334444333 3469999999999999999988765542
Q ss_pred --------------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ecC----CCCc
Q 000047 1453 --------------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDT----DWNP 1510 (2693)
Q Consensus 1453 --------------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yDp----pWNP 1510 (2693)
+..+||+++..+|..+++.|+++..+ +|++|.++++|||++.+++||+ ||. +|++
T Consensus 395 l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~ 471 (1010)
T 2xgj_A 395 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471 (1010)
T ss_dssp CHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCH
T ss_pred chhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCH
Confidence 77899999999999999999987766 8999999999999999999999 999 9999
Q ss_pred cchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1511 ~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
..|.|++||++|.|+....++|.|+....
T Consensus 472 ~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 99999999999999988889998888653
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=285.92 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=208.2
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP- 1164 (2693)
..|+++|.+++..+..-...+ .+.||..+||+|||++++..+...+..+ ..+|||||+.. ..||.++|.+|+.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 379999999999988755444 4889999999999999988777666543 45899999854 5789999999986
Q ss_pred -CCcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-h
Q 000047 1165 -RIHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-Y 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-L 1240 (2693)
++++..++|.... +... ...+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. .
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~-~~~l~~g~~~IvVgT~~ll~~~-----~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~ 514 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKI-KSGLRNGQIDVVIGTHALIQED-----VHFKNLGLVIIDEQHRFGVKQ---REALMNKG 514 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHH-HHHHHSSCCCEEEECTTHHHHC-----CCCSCCCEEEEESCCCC--------CCCCSSS
T ss_pred cCceEEEEeCCCCHHHHHHH-HHHHhcCCCCEEEECHHHHhhh-----hhccCCceEEecccchhhHHH---HHHHHHhC
Confidence 5788888886543 2222 2334556799999999988652 334567999999999983221 111111 1
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.|+|||||+...+...+ |.. ..
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~--------------------~g~-------~~--------------------------- 540 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAF--------------------YGD-------LD--------------------------- 540 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHH--------------------TCC-------SS---------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHH--------------------hCC-------cc---------------------------
Confidence 346789999999643221100 000 00
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
..+...+|.....+...
T Consensus 541 ----~s~i~~~p~~r~~i~~~----------------------------------------------------------- 557 (780)
T 1gm5_A 541 ----VTVIDEMPPGRKEVQTM----------------------------------------------------------- 557 (780)
T ss_dssp ----CEEECCCCSSCCCCEEC-----------------------------------------------------------
T ss_pred ----eeeeeccCCCCcceEEE-----------------------------------------------------------
Confidence 00001111110000000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHH
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALI 1469 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~~---rGikylRLDGSTS~eERqeiI 1469 (2693)
+....+...+.+.+.+....+++++|||.... .++.+.+.|.. .++.+..+||.++.++|.+++
T Consensus 558 -----~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 558 -----LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp -----CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred -----EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 00001222333444444456778888887553 45677777876 578899999999999999999
Q ss_pred HHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEE
Q 000047 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1470 d~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+.|+++..+ +||+|+++++|||++++++||+||+++ +...+.|++||++|.|+...|.++
T Consensus 633 ~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 633 LEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp HHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred HHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 999887766 799999999999999999999999985 788899999999999976655443
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=284.10 Aligned_cols=368 Identities=15% Similarity=0.117 Sum_probs=220.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPsL 1166 (2693)
...|++||.+++..+. ++.+.|++.+||+|||++++..+...+.. .+.+||++|.. |..||..+|.+++.
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 4689999999998764 47889999999999999988777666533 34589999985 55889999999987
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-cc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a~ 1243 (2693)
.+.++.|... .....+|+|+|++.|............++++|||||||+|.+.. ..+...+..+. ..
T Consensus 253 ~VglltGd~~----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 DVGLMTGDIT----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp SEEEECSSCB----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred CccEEeCccc----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 5566777532 23568999999999877544333334468999999999997643 22333344443 35
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+.|+||||. .|. .++...+..+... +....... .+|+-++..
T Consensus 323 qvl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~~~----------------------~rp~pl~~~ 364 (1108)
T 3l9o_A 323 RYVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVYTN----------------------FRPTPLQHY 364 (1108)
T ss_dssp EEEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEEEC----------------------CCSSCEEEE
T ss_pred eEEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEecC----------------------CCcccceEE
Confidence 568999994 333 3333322221110 00000000 000000000
Q ss_pred HhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC
Q 000047 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~ 1403 (2693)
+...-......++. ....+....|......+ ........... ..+.. .. ..+..
T Consensus 365 ---~~~~~~~~~~~~vd-~~~~~~~~~~~~~~~~l---~~~~~~~~~~~--~~~~~-------------~~----~~~~~ 418 (1108)
T 3l9o_A 365 ---LFPAHGDGIYLVVD-EKSTFREENFQKAMASI---SNQIGDDPNST--DSRGK-------------KG----QTYKG 418 (1108)
T ss_dssp ---EEETTSSCCEEEEE-TTTEECHHHHHHHHTTC---------------------------------------------
T ss_pred ---EeecCCcceeeeec-cccchhhhhHHHHHHHH---Hhhhccccccc--ccccc-------------cc----ccccc
Confidence 00000000000000 00000001111110000 00000000000 00000 00 00000
Q ss_pred hhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCe------------------------------
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR------------------------------ 1452 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGik------------------------------ 1452 (2693)
. .........+..++..+.. .+.++||||.....++.+..+|...++.
T Consensus 419 ~-~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 497 (1108)
T 3l9o_A 419 G-SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHH
T ss_pred c-cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 0 0000012334444444433 3569999999999999999988654433
Q ss_pred ---------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccc--------hhh
Q 000047 1453 ---------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--------DLQ 1515 (2693)
Q Consensus 1453 ---------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~--------diQ 1515 (2693)
+..+||+++..+|..+++.|.++... +||+|+++++|||++++++||+++.+|++.. |+|
T Consensus 498 ~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQ 574 (1108)
T 3l9o_A 498 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 574 (1108)
T ss_dssp HHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHH
T ss_pred HHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHH
Confidence 78899999999999999999988766 8999999999999999999999999888776 999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
++||++|.|.....++|.++.....+.
T Consensus 575 r~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 575 MSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp HHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred hhcccCCCCCCCceEEEEEecCCcCHH
Confidence 999999999988999998888774443
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=268.94 Aligned_cols=329 Identities=16% Similarity=0.144 Sum_probs=215.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sLk 1167 (2693)
.|+++|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. +..+|..+++++.. ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478999999999999999976665444322 35699999987 66889999966543 677
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHR 1245 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~R 1245 (2693)
+..+.|......+ .....+|+|+|++.+............++++|||||+|.+.+.. ..+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8888876432211 12378999999998865433222223467999999999987522 233344455566778
Q ss_pred ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 000047 1246 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKH 1325 (2693)
Q Consensus 1246 LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKk 1325 (2693)
|+||||+- +.. .|.+||..+...... +|+
T Consensus 179 i~lSATl~--n~~------------------~~~~~l~~~~~~~~~------------------------r~~------- 207 (715)
T 2va8_A 179 LALSATIS--NYK------------------QIAKWLGAEPVATNW------------------------RPV------- 207 (715)
T ss_dssp EEEESCCT--THH------------------HHHHHHTCEEEECCC------------------------CSS-------
T ss_pred EEEcCCCC--CHH------------------HHHHHhCCCccCCCC------------------------CCC-------
Confidence 99999983 233 344444322100000 000
Q ss_pred HHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChh
Q 000047 1326 KVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPI 1405 (2693)
Q Consensus 1326 DVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~L 1405 (2693)
| .+..+...- ... .++.......... .+
T Consensus 208 ------~--l~~~~~~~~-------------------~~~----------------~~~~~~~~~~~~~---------~~ 235 (715)
T 2va8_A 208 ------P--LIEGVIYPE-------------------RKK----------------KEYNVIFKDNTTK---------KV 235 (715)
T ss_dssp ------C--EEEEEEEEC-------------------SST----------------TEEEEEETTSCEE---------EE
T ss_pred ------C--ceEEEEecC-------------------Ccc----------------cceeeecCcchhh---------hc
Confidence 1 110000000 000 0000000000000 00
Q ss_pred hhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC-----------------------------------
Q 000047 1406 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ----------------------------------- 1450 (2693)
Q Consensus 1406 vr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG----------------------------------- 1450 (2693)
.....++..+.+++ ..++++|||+.....++.+...|....
T Consensus 236 ~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 236 HGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp ESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 00112333333333 467899999999999998888886532
Q ss_pred -CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec-------CCCCccchhhhhh
Q 000047 1451 -YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-------TDWNPQVDLQAQA 1518 (2693)
Q Consensus 1451 -ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD-------ppWNP~~diQAIG 1518 (2693)
+.+..+||+++.++|..+.+.|.++... +||+|.++++|||++++++||. || .++++..+.|++|
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 3488899999999999999999887655 7999999999999999999999 99 8999999999999
Q ss_pred hhcccCCcccEEEEEEEeCCC
Q 000047 1519 RAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1519 RAHRIGQkKeV~VyRLIT~gS 1539 (2693)
||+|.|+.....+|+|++...
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGG
T ss_pred hcCCCCCCCCceEEEEeCCch
Confidence 999999988888999987765
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=271.35 Aligned_cols=323 Identities=19% Similarity=0.167 Sum_probs=218.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sLk 1167 (2693)
.|++||.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|||+|.. +..+|.+++++|.. +++
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999998854 37899999999999999997666554432 35699999986 66889999976654 578
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhh----c
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHY----Q 1241 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~L----k 1241 (2693)
+..+.|...... ......+|+|+|++.+............++++|||||+|.+.+. ...+...+..+ .
T Consensus 98 v~~~~G~~~~~~------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCS------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcch------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 888888643221 11247899999999886543332222346799999999998763 22233333333 2
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
..+.|+||||+- +..+ |.+|+..+.....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~~------------------------------- 200 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVSD------------------------------- 200 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEECC-------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccCC-------------------------------
Confidence 456799999972 2333 3344432110000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
..|-..+..+...-. + +... .....
T Consensus 201 --------~r~~~l~~~~~~~~~-------------~-------------------------~~~~---~~~~~------ 225 (702)
T 2p6r_A 201 --------WRPVPLVEGVLCEGT-------------L-------------------------ELFD---GAFST------ 225 (702)
T ss_dssp --------CCSSCEEEEEECSSE-------------E-------------------------EEEE---TTEEE------
T ss_pred --------CCCccceEEEeeCCe-------------e-------------------------eccC---cchhh------
Confidence 000001110000000 0 0000 00000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------------------CC
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QY 1451 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------Gi 1451 (2693)
.+.-.+...+.+++ ..++++|||+..+..++.+...|... ++
T Consensus 226 ----~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 226 ----SRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp ----EEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred ----hhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00000233333333 46789999999999988888777542 23
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec---CCCCccchhhhhhhhcccC
Q 000047 1452 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD---TDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1452 kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD---ppWNP~~diQAIGRAHRIG 1524 (2693)
.+..+||+++.++|..+.+.|+++... +||+|.++++|||++++++||. || .++++..+.|++|||+|.|
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g 374 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCC
Confidence 467799999999999999999887655 7999999999999999999999 77 7899999999999999999
Q ss_pred CcccEEEEEEEeCCCHHH
Q 000047 1525 QKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1525 QkKeV~VyRLIT~gSIEE 1542 (2693)
+.+...+|.|++....+.
T Consensus 375 ~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 375 MDERGEAIIIVGKRDREI 392 (702)
T ss_dssp TCSCEEEEEECCGGGHHH
T ss_pred CCCCceEEEEecCccHHH
Confidence 988899999998876543
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=268.65 Aligned_cols=323 Identities=17% Similarity=0.124 Sum_probs=218.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sLk 1167 (2693)
.|++||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .+..+|..++.+|.. +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999852 23478899999999999999855444333222 3568999997 566889999976654 678
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-ccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSH 1244 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a~~ 1244 (2693)
+..++|...... ......+|+|+|++.+............++++|||||+|++... ...+...+..+. ..+
T Consensus 98 v~~~~G~~~~~~------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKD------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCC------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCccc------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 888888543221 11247899999999886543222222346799999999999752 223333444454 467
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
.|+||||+- +.. .|.+|+..+.....
T Consensus 172 ii~lSATl~--n~~------------------~~~~~l~~~~~~~~---------------------------------- 197 (720)
T 2zj8_A 172 IIGLSATIG--NPE------------------ELAEWLNAELIVSD---------------------------------- 197 (720)
T ss_dssp EEEEECCCS--CHH------------------HHHHHTTEEEEECC----------------------------------
T ss_pred EEEEcCCcC--CHH------------------HHHHHhCCcccCCC----------------------------------
Confidence 799999973 233 34444432110000
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
..|-..+..+.... .+... . ... +
T Consensus 198 -----~rp~~l~~~~~~~~-------------~~~~~-~--~~~--------------~--------------------- 221 (720)
T 2zj8_A 198 -----WRPVKLRRGVFYQG-------------FVTWE-D--GSI--------------D--------------------- 221 (720)
T ss_dssp -----CCSSEEEEEEEETT-------------EEEET-T--SCE--------------E---------------------
T ss_pred -----CCCCcceEEEEeCC-------------eeecc-c--cch--------------h---------------------
Confidence 00101111100000 00000 0 000 0
Q ss_pred hhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------C---------------C
Q 000047 1405 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------Q---------------Y 1451 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------G---------------i 1451 (2693)
....++..+.+++ ..++++||||..+..++.+...|... + +
T Consensus 222 --~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 222 --RFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp --ECSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred --hhhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 0011233333333 45789999999999988888877642 1 2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec----CCCCccchhhhhhhhccc
Q 000047 1452 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD----TDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1452 kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD----ppWNP~~diQAIGRAHRI 1523 (2693)
.+..+||+++.++|..+.+.|+++... +||+|.++++|||++++++||. || .++++..+.|++|||+|.
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 488999999999999999999887655 7999999999999999999998 88 689999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHH
Q 000047 1524 GQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1524 GQkKeV~VyRLIT~gSIEE 1542 (2693)
|+.+...+|.|++....+.
T Consensus 373 g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TTCSEEEEEEECSSSCHHH
T ss_pred CCCCCceEEEEecCccHHH
Confidence 9988889999999887554
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=270.33 Aligned_cols=375 Identities=15% Similarity=0.091 Sum_probs=228.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
+.+|++||.+++..+.. +.+.|++.+||+|||++++..+..++.. .+.+|||+|. .|..||.++|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999987764 7889999999999999876666555432 3458999997 56688999999999888
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~ 1243 (2693)
.+..++|... .....+|+|+|++.|........+...++++|||||||++.+. ...+...+..+.. .
T Consensus 110 ~v~~l~G~~~----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQ----------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCE----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCc----------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 8988888642 2346899999999997654433344457899999999999764 3344455555543 5
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+.|+||||+- +..+ |.+|+........ +++
T Consensus 180 ~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~~---------------------------~vi--- 209 (997)
T 4a4z_A 180 KFILLSATVP--NTYE------------------FANWIGRTKQKNI---------------------------YVI--- 209 (997)
T ss_dssp EEEEEECCCT--THHH------------------HHHHHHHHHTCCE---------------------------EEE---
T ss_pred CEEEEcCCCC--ChHH------------------HHHHHhcccCCce---------------------------EEE---
Confidence 6699999973 2223 3344321000000 000
Q ss_pred HhHHhhcCccceeEeee--------c-cccHHHHHHHHHHHHHhhccCCCC----------------------Ccch---
Q 000047 1324 KHKVENELPEKIERLVR--------C-EASAYQKLLMKRVEENLGSIGNSK----------------------GRSV--- 1369 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~--------c-eLSa~Qk~LYk~Lee~l~si~~sk----------------------~rsl--- 1369 (2693)
.....|...++.+. + ....+....|......+....... .+..
T Consensus 210 ---~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 286 (997)
T 4a4z_A 210 ---STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGG 286 (997)
T ss_dssp ---ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------
T ss_pred ---ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 00000000000000 0 000000001111000000000000 0000
Q ss_pred ---hHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH
Q 000047 1370 ---HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1370 ---ln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L 1446 (2693)
...-..-+..+.-+.. .... ...+.........++..|.++|.. ....++||||.....++.+..+|
T Consensus 287 ~~~~~~g~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 287 RGNSTRGGANRGGSRGAGA------IGSN--KRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp --------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTT
T ss_pred ccccccccccccccccccc------cccc--ccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHH
Confidence 0000000000000000 0000 000000001122355566666654 24579999999999999999999
Q ss_pred hhcCC---------------------------------------eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1447 TFKQY---------------------------------------RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1447 ~~rGi---------------------------------------kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...++ .+..+||+++..+|..+++.|+.+..+ +|++|.
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~ 433 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATE 433 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEch
Confidence 77665 478999999999999999999988766 899999
Q ss_pred ccccccCccccCEEEEecCCC---------CccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDW---------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppW---------NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
++++|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.++..+..++..+.
T Consensus 434 ~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 434 TFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp HHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred HhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 9999999999 7777766555 99999999999999999988889888876666655554
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=264.18 Aligned_cols=320 Identities=16% Similarity=0.228 Sum_probs=218.9
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC-CC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA-PR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa-Ps 1165 (2693)
+.++.++|.+++..++. +.+.|+...||+|||+.++..+.+++ .....+|||+|+.. ..||.+.|.+++ .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34789999999987765 67899999999999997766666555 23345899999855 578999999976 35
Q ss_pred CcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc-------------
Q 000047 1166 IHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS------------- 1230 (2693)
Q Consensus 1166 LkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s------------- 1230 (2693)
+++..++|.... +... ...+..+.++|+|+|++.|.+... .+...++++|||||||++....
T Consensus 149 i~v~~l~Gg~~~~er~~~-~~~l~~g~~~IlV~Tp~rL~~~l~--~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~ 225 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKF-EKSFEEDDYHILVFSTQFVSKNRE--KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 225 (1104)
T ss_dssp SCEEEECTTCCTTHHHHH-HHHHHTSCCSEEEEEHHHHHHSHH--HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCC
T ss_pred CeEEEEeCCCCHHHHHHH-HHHHhCCCCCEEEECHHHHHHHHH--hhcccCcCEEEEeCCCccccccccchhhhHhcCCC
Confidence 688888886543 2222 223444569999999999976543 2455678999999999865321
Q ss_pred ch-HHHHHHhhc------------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhh
Q 000047 1231 CK-LNADLKHYQ------------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEA 1297 (2693)
Q Consensus 1231 SK-lsraLk~Lk------------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~ 1297 (2693)
.. +...+..+. ....+++|||+....+.+++ +...+. +.....
T Consensus 226 ~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~--i~v~~~------ 281 (1104)
T 4ddu_A 226 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLN--FTVGRL------ 281 (1104)
T ss_dssp HHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTC--CCCCBC------
T ss_pred HHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhccee--EEeccC------
Confidence 11 233333332 34668999997544332211 000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHH
Q 000047 1298 LLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELR 1377 (2693)
Q Consensus 1298 ~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLR 1377 (2693)
...+....+
T Consensus 282 -------------------------------~~~~~~i~~---------------------------------------- 290 (1104)
T 4ddu_A 282 -------------------------------VSVARNITH---------------------------------------- 290 (1104)
T ss_dssp -------------------------------CCCCCCEEE----------------------------------------
T ss_pred -------------------------------CCCcCCcee----------------------------------------
Confidence 000000000
Q ss_pred HhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEE-EE
Q 000047 1378 NICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RL 1456 (2693)
Q Consensus 1378 KICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikyl-RL 1456 (2693)
.+..+.|...|.++|..+ +.++||||+....++.|..+|...|+.+. .+
T Consensus 291 ---------------------------~~~~~~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~l 340 (1104)
T 4ddu_A 291 ---------------------------VRISSRSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETW 340 (1104)
T ss_dssp ---------------------------EEESCCCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESS
T ss_pred ---------------------------EEEecCHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEe
Confidence 000113555666666652 47999999999999999999999999998 99
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC-----------------------
Q 000047 1457 DGHTSGGDRGALIDKFNQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW----------------------- 1508 (2693)
Q Consensus 1457 DGSTS~eERqeiId~FN~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW----------------------- 1508 (2693)
|| +|.+ +++|+++..+ +||+ |+++++|||+++ +++||+||+|.
T Consensus 341 hg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~ 411 (1104)
T 4ddu_A 341 SE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMG 411 (1104)
T ss_dssp SS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHS
T ss_pred cC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 98 3555 9999988766 6788 999999999999 99999999998
Q ss_pred -------------------------------------------------CccchhhhhhhhcccCCccc--EEEEEEEeC
Q 000047 1509 -------------------------------------------------NPQVDLQAQARAHRIGQKRD--VLVLRFETV 1537 (2693)
Q Consensus 1509 -------------------------------------------------NP~~diQAIGRAHRIGQkKe--V~VyRLIT~ 1537 (2693)
++..|+||.||++|+|...- ...+-++
T Consensus 412 ~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~-- 489 (1104)
T 4ddu_A 412 LIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 489 (1104)
T ss_dssp SCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--
Confidence 67789999999999876432 2222233
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 000047 1538 QTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1538 gSIEEkIleraekKl~Li 1555 (2693)
-|++++..+++++...
T Consensus 490 --~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 490 --EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHHhhh
Confidence 2567777777776644
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=255.39 Aligned_cols=350 Identities=17% Similarity=0.168 Sum_probs=208.4
Q ss_pred CcchHHHHHHHHHHHHHhhc----------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN----------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWES 1157 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n----------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~e 1157 (2693)
..|||||.+++.+++..+.. +.+||+++.||+|||++++.++ .++........+|||||. .|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 46999999999999875432 3689999999999999997666 444333334579999995 66799999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchHHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKLNA 1235 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKlsr 1235 (2693)
+|..|.+.. ++.+.... .+ ...+.....+|+|+|++.|....... ......+.+||||||||+... ..++
T Consensus 349 ~f~~f~~~~---v~~~~s~~--~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSENTA--GL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQK 420 (1038)
T ss_dssp HHHTTSTTC---SSSSCCCH--HH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHH
T ss_pred HHHHhcccc---cccccCHH--HH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHH
Confidence 999998652 11221111 11 12222357899999999997643211 112236899999999998642 2344
Q ss_pred HH-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DL-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aL-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.+ ..+...++|+|||||....-. .+. ......|+.++.... +...
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~-------------~~~-~~t~~~FG~~i~~Y~--------------------l~~A 466 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENA-------------LGS-ETTASVFGRELHSYV--------------------ITDA 466 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTC-------------TTS-CCHHHHHCSEEEEEC--------------------HHHH
T ss_pred HHHHhCCcccEEEEeCCccccccc-------------hhh-hHHHHHhCCeeEeec--------------------HHHH
Confidence 44 456778899999999753200 000 011222332221100 0000
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
++ + ..-+|.+.++. ...+. ++.+. .... ...+..+- +
T Consensus 467 I~---------d-g~l~p~~v~y~---~v~~~----~~~~~-----~e~d--------~~~~~~i~-~------------ 503 (1038)
T 2w00_A 467 IR---------D-EKVLKFKVDYN---DVRPQ----FKSLE-----TETD--------EKKLSAAE-N------------ 503 (1038)
T ss_dssp HH---------H-TSSCCEEEEEC---CCCGG----GHHHH-----TCCC--------HHHHHHTC-S------------
T ss_pred Hh---------C-CCcCCeEEEEE---eccch----hhhcc-----cccc--------HHHHHHHH-H------------
Confidence 00 0 00122221111 00000 00000 0000 00000000 0
Q ss_pred ccCCCCCCChhhhcccHHHHHH-HHHHHhhc---------CCCeEEEEEcchHHHHHHHHHHhhcC------------Ce
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLD-RLLPKLKA---------TDHRVLFFSTMTRLLDVMEDYLTFKQ------------YR 1452 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLd-eLL~kLka---------tGhKVLIFSQft~tLDILed~L~~rG------------ik 1452 (2693)
. ..+....++..+. .++..+.. .+.++||||..+..+..+.+.|...+ ++
T Consensus 504 ----~----~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 504 ----Q----QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp ----T----TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred ----H----HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 0 0000112233332 23333221 35689999999999999988887654 45
Q ss_pred E-EEEeCC----------C----------CH-----------------------------HHHHHHHHHHhCCCCCceEE
Q 000047 1453 Y-LRLDGH----------T----------SG-----------------------------GDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1453 y-lRLDGS----------T----------S~-----------------------------eERqeiId~FN~~dSd~fVf 1482 (2693)
+ +.++|. + +. .+|..++++|+++..+ +
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---I 652 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---L 652 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---E
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---E
Confidence 5 445543 1 11 1488899999887655 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc-cc-EEEEEEEe
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RD-VLVLRFET 1536 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk-Ke-V~VyRLIT 1536 (2693)
||+|+.+.+|+|.+.+ .|+++|.+...+.++||+||+.|.+.. |+ ..|+.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 8899999999999999 678899999999999999999999874 44 67777764
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=253.44 Aligned_cols=317 Identities=15% Similarity=0.188 Sum_probs=204.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs-- 1165 (2693)
..+ ++|.+++..++. +.+.|+..+||+|||+.++.++..+.. ....+|||+|+.. ..|+.++|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 347 999999987774 788999999999999855555544432 2345899999855 57899999988753
Q ss_pred C----cEEEEcCChHHHHHH-HHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1166 I----HKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1166 L----kVIvy~Gs~~eRk~l-~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+ .+..++|......+. ....+. . .+|+|+|++.|...... |. ++++|||||||+|.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~-~-~~IlV~TP~~L~~~l~~--L~--~l~~lViDEah~~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLR-N-FKIVITTTQFLSKHYRE--LG--HFDFIFVDDVDAILKASKNVDKLLHLL 201 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGG-G-CSEEEEEHHHHHHCSTT--SC--CCSEEEESCHHHHHTSTHHHHHHHHHT
T ss_pred CCccceEEEEeCCCChhhHHHHHhhcc-C-CCEEEEcHHHHHHHHHH--hc--cCCEEEEeChhhhhhccccHHHHHHHh
Confidence 4 677777765433211 112222 2 89999999999885543 33 789999999999988655555555444
Q ss_pred c------------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHH
Q 000047 1241 Q------------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLII 1308 (2693)
Q Consensus 1241 k------------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI 1308 (2693)
. ....+++|+|.-.. .++. ..|..
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~---------------------------- 237 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFR---------------------------- 237 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHH----------------------------
T ss_pred CcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhh----------------------------
Confidence 1 23457777776322 1000 00000
Q ss_pred HHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccch
Q 000047 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQL 1388 (2693)
Q Consensus 1309 ~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~ 1388 (2693)
..+. +.+.. .........+. ++
T Consensus 238 ----~~~~-i~v~~-----~~~~~~~i~~~---------------------------------------------~~--- 259 (1054)
T 1gku_B 238 ----QLLN-FDIGS-----SRITVRNVEDV---------------------------------------------AV--- 259 (1054)
T ss_dssp ----HHHC-CCCSC-----CEECCCCEEEE---------------------------------------------EE---
T ss_pred ----cceE-EEccC-----cccCcCCceEE---------------------------------------------Ee---
Confidence 0000 00000 00000000000 00
Q ss_pred hhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Q 000047 1389 HAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468 (2693)
Q Consensus 1389 ~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqei 1468 (2693)
...|...|.++|..+ +.++||||.....++.|.++|... +++..+||.+ .++
T Consensus 260 -------------------~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~ 311 (1054)
T 1gku_B 260 -------------------NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGD 311 (1054)
T ss_dssp -------------------SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHH
T ss_pred -------------------chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHH
Confidence 012334455555443 678999999999999999999988 9999999987 478
Q ss_pred HHHHhCCCCCceEEEee----ecccccccCcccc-CEEEEecCC------------------------------------
Q 000047 1469 IDKFNQQDSPFFIFLLS----IRAGGVGVNLQAA-DTVIIFDTD------------------------------------ 1507 (2693)
Q Consensus 1469 Id~FN~~dSd~fVfLLS----TrAGGeGLNLQaA-DtVIiyDpp------------------------------------ 1507 (2693)
+++|+.+..+ +||+ |+++++|||++.+ ++||+||.+
T Consensus 312 l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1054)
T 1gku_B 312 YEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPA 388 (1054)
T ss_dssp HHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTT
T ss_pred HHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999987765 6777 9999999999995 999999999
Q ss_pred -----------------------------------CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1508 -----------------------------------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1508 -----------------------------------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
.+...|+||+||++|.|.......+.|+..+ |+.++..+.+++
T Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l 466 (1054)
T 1gku_B 389 VERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERA 466 (1054)
T ss_dssp TSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHH
Confidence 7899999999999999876432223333333 455666666665
Q ss_pred HH
Q 000047 1553 GV 1554 (2693)
Q Consensus 1553 ~L 1554 (2693)
..
T Consensus 467 ~~ 468 (1054)
T 1gku_B 467 KL 468 (1054)
T ss_dssp HT
T ss_pred hh
Confidence 54
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-18 Score=221.00 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|.++...+.+|||||......+.|...|...|+.+..|+|.....+|..+...|+.+ . +||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEeCC
Confidence 34699999998887767788999999999999999999999999999999998877776555555432 2 799999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
++|+|+|+. ...+||+||.+-++..|.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999998 678999999999999999999999999975443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-19 Score=220.27 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCE----
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT---- 1500 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADt---- 1500 (2693)
.+.++||||.....++.+.+.|...++++..+||. +|.++++.|+++..+ +||+|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999996 688999999988766 899999999999998 555
Q ss_pred -------------EEEecCCCCccchhhhhhhhcccCCccc-EEEE
Q 000047 1501 -------------VIIFDTDWNPQVDLQAQARAHRIGQKRD-VLVL 1532 (2693)
Q Consensus 1501 -------------VIiyDppWNP~~diQAIGRAHRIGQkKe-V~Vy 1532 (2693)
||+||.+.+...|.|++||++|.|.... +.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 6788999999999999999999996543 3343
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-19 Score=219.90 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEe
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiy 1504 (2693)
.+.++||||+....++.|.++|...|+.+..|||.+ ++++++.|+++... +||+|+++++|||+.. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 356999999999999999999999999999999964 46799999887766 8999999999999999 999999
Q ss_pred c--------------------CCCCccchhhhhhhhcccCCc
Q 000047 1505 D--------------------TDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1505 D--------------------ppWNP~~diQAIGRAHRIGQk 1526 (2693)
| .+.++..|+||+||++|.|..
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 8 889999999999999999973
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=217.80 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.++++||||.....++.+.++|...|+++..+|| ++|.++++.|+++... +||+|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3779999999999999999999999999999999 5789999999888766 899999999999999 999986
Q ss_pred ------------------ecCCCCccchhhhhhhhcccCC
Q 000047 1504 ------------------FDTDWNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1504 ------------------yDppWNP~~diQAIGRAHRIGQ 1525 (2693)
||.+.++..|.|++||++|.|.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 9999999999999999999853
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-19 Score=232.25 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=99.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.+.++||||.....++.+.++|...++++..||| ++|.++++.|+++... +||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 5789999999999999999999999999999999 4899999999887766 899999999999999 999997
Q ss_pred -------------------ecCCCCccchhhhhhhhcccC-CcccEEEEEEEe-CCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1504 -------------------FDTDWNPQVDLQAQARAHRIG-QKRDVLVLRFET-VQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1504 -------------------yDppWNP~~diQAIGRAHRIG-QkKeV~VyRLIT-~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
||.+.++..|.|++||++|.| +.-.+ |.|+. ...-|..++...+.+..+...-+..|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a--i~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g 558 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE--YHYGGGTSEDDTMLAHWTEAKILLDNIHLPNG 558 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE--EEECSCCCCCCTTBHHHHHHHHHHHTSCBTTT
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE--EEEEecCChhHHHHHHHHHHHHhhhhccCCch
Confidence 667888899999999999994 44333 33332 12223344455555555554434433
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=222.49 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|..+...+.+|||||......+.|...|...|+++..|+|.....+|..+...|+.+ . ++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 35699999999988777889999999999999999999999999999999998777777677778654 2 899999
Q ss_pred ccccccCcccc-------------------------------------CEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQAA-------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQaA-------------------------------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+|+|+|+... .+||+||.+-++..|.|++||++|.|..-..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 5999999999999999999999999975443
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-16 Score=201.99 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=101.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+.+.++...+.+|||||......+.|..+|...|+++..|+|.....+|.-+...|+.+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34699999999988878899999999999999999999999999999999998766666566677543 2 799999
Q ss_pred ccccccCcccc----------------------------------------------------CEEEEecCCCCccchhh
Q 000047 1488 AGGVGVNLQAA----------------------------------------------------DTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1488 AGGeGLNLQaA----------------------------------------------------DtVIiyDppWNP~~diQ 1515 (2693)
.+|+|+|+... .+||+||.+.++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999863 49999999999999999
Q ss_pred hhhhhcccCCccc
Q 000047 1516 AQARAHRIGQKRD 1528 (2693)
Q Consensus 1516 AIGRAHRIGQkKe 1528 (2693)
++||++|.|..-.
T Consensus 597 r~GRTGRqGdpG~ 609 (922)
T 1nkt_A 597 LRGRSGRQGDPGE 609 (922)
T ss_dssp HHHTSSGGGCCEE
T ss_pred HhcccccCCCCee
Confidence 9999999997544
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=215.97 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=88.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE--
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-- 1503 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-- 1503 (2693)
+.++||||.....++.|.++|...|+.+..|+|. +|.++++.|+++... +||+|+++++|||++. ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECC
Confidence 6799999999999999999999999999999994 788899999877665 7999999999999999 99998
Q ss_pred ------------------ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1504 ------------------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1504 ------------------yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
||.|.++..|+||+||++|.|.. +-.+|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 23445556654
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=218.80 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE---
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--- 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV--- 1501 (2693)
.+.++||||.....++.|.++|...|+++..||| ++|.++++.|+++... +||+|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg----~~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSR----KTFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECT----TTHHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEECh----HHHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 3679999999999999999999999999999998 3788999999888766 899999999999996 8988
Q ss_pred -----------------EEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC-CHHHHHHHHHHHHHHHHhhhccc
Q 000047 1502 -----------------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ-TVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1502 -----------------IiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g-SIEEkIleraekKl~Li~kVIqa 1561 (2693)
|+||.+-++..|+||+||++|.|..+. .+|.|++.. .-|...+..++.++.+.+.-+..
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 777778888899999999999986433 345566521 22334445555555554444433
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-18 Score=198.60 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=123.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
.+|++||.+++.+++. +.++||+++||+|||+++++++..++..+ .+++|||||. .++.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5899999999998876 36789999999999999998887776532 3479999998 677899999999964 3
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+..+.+...... ......+|+|+||+.+.+... ....+|++|||||||++.+. .+...+..+ ...+
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~ 254 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCe
Confidence 45555555432111 123578999999999976422 23357899999999999864 444555666 5788
Q ss_pred cccccccCCCCCHHHHHHHhhhccC
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
+|+|||||. |...++|.++.++.|
T Consensus 255 ~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 255 KFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred EEEEeCCCC-CcchHHHHHHHhcCC
Confidence 999999996 445788888877755
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=175.75 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=116.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|... .+.++||||+....++.|.++|...|+.+..++|+++..+|..+++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 456999999999864 567999999999999999999999999999999999999999999999987655 789999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
++++|||++.+++||+||++|++..|+||+||++|.|+...+ |.|++.. |...+...+.
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4455543 4444444443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=215.97 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=95.5
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhh-----------cCCeEEEEeCCCCHHHHHHHHHHHh-----CCCCCceEEEeeecc
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTF-----------KQYRYLRLDGHTSGGDRGALIDKFN-----QQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~-----------rGikylRLDGSTS~eERqeiId~FN-----~~dSd~fVfLLSTrA 1488 (2693)
.+.++|||+.....++.+.+.|.. .++.++.++|+++.++|.++++.|. .+ ..-+||+|++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g---~~kVlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP---GRKVVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC---CEEEEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC---ceEEEEeCcH
Confidence 477999999999999999888874 6889999999999999999999997 43 3458999999
Q ss_pred cccccCccccCEEEEecC------------------CCCccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1489 GGVGVNLQAADTVIIFDT------------------DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp------------------pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
+++|||+.++++||.|+. +.+...+.||.||++|. ++-.+|+|++....
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999766 88999999999999998 45577888876544
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=181.32 Aligned_cols=126 Identities=23% Similarity=0.323 Sum_probs=98.8
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
..+.|+..|.++|.... .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +||+|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 34679999999998743 578999999999999999999999999999999999999999999999987765 79999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++++|||++.+++||+||++||+..|+||+||++|.|++.. ++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 999999999999999999999999999999999999997644 45555543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-17 Score=176.56 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=115.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|..+ .+.++||||++...++.|.++|...|+.+..++|.++..+|..+++.|+++... +||+|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 356999999999865 467999999999999999999999999999999999999999999999987665 789999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
++++|||++.+++||+||++||+..|+||+||++|.|+...+.+ |++.. -+..++..+.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~l~ 148 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQ 148 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE--EECSH-HHHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE--EEcCh-hHHHHHHHHH
Confidence 99999999999999999999999999999999999998655443 44432 2334444443
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=212.76 Aligned_cols=324 Identities=16% Similarity=0.137 Sum_probs=192.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHH-HCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINF-WAP-- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeK-waP-- 1164 (2693)
..+.|.|.+++..+ |+.+.|.+++.+||+|||+++...|...+.... .+.+|+|+|...| .+-..++.+ |..
T Consensus 925 ~~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 925 PFFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp SBCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 35788999998755 557789999999999999998766665554433 3458999998554 555555543 332
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--CcccccCccEEEEccccccccccchHH-HHHHhh-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSKIQWHYIIIDEGHRIKNASCKLN-ADLKHY- 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~kikWd~VIIDEAHRIKN~sSKls-raLk~L- 1240 (2693)
++++..+.|......+.. .+.+|+|+|++.+...... ......+..+|||||+|.|.......+ ..+.++
T Consensus 1001 g~~V~~ltGd~~~~~~~~------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~ 1074 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1074 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcchhhc------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHH
Confidence 567888888765433222 3579999999987432211 111123568999999999976433222 222222
Q ss_pred -------cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1241 -------QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1241 -------ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
...+.++||||- .|. .+|.+|++.........
T Consensus 1075 ~i~~~~~~~~riI~lSATl--~N~------------------~dla~WL~~~~~~~~~~--------------------- 1113 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSL--SNA------------------KDVAHWLGCSATSTFNF--------------------- 1113 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCB--TTH------------------HHHHHHHTCCSTTEEEC---------------------
T ss_pred HHHhhcCCCceEEEEeCCC--CCH------------------HHHHHHhCCCCCCeEEe---------------------
Confidence 123558899994 233 34555554311000000
Q ss_pred HhhhhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
....-|-..+ ++...........+..
T Consensus 1114 -------------~~~~RPvpL~~~i~~~~~~~~~~~~~~---------------------------------------- 1140 (1724)
T 4f92_B 1114 -------------HPNVRPVPLELHIQGFNISHTQTRLLS---------------------------------------- 1140 (1724)
T ss_dssp -------------CGGGCSSCEEEEEEEECCCSHHHHHHT----------------------------------------
T ss_pred -------------CCCCCCCCeEEEEEeccCCCchhhhhh----------------------------------------
Confidence 0001121111 1111111111000000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh-------------------------
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT------------------------- 1447 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~------------------------- 1447 (2693)
....+...+.+ ...++.+||||..+..+..+...|.
T Consensus 1141 ------------------~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1141 ------------------MAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp ------------------THHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred ------------------hcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 00001111111 1234556666665554443332221
Q ss_pred ---------hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec------CCC
Q 000047 1448 ---------FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD------TDW 1508 (2693)
Q Consensus 1448 ---------~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD------ppW 1508 (2693)
.....+..+||+++.++|..+.+.|.++... +|++|..++.||||++...||. || .+.
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~ 1278 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDY 1278 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEEC
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCC
Confidence 0123477899999999999999999988765 7999999999999997666652 33 246
Q ss_pred CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1509 NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
++..|.|++|||+|.|....-.++.|+...
T Consensus 1279 s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1279 PIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred CHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 788999999999999987776676666544
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=170.68 Aligned_cols=124 Identities=20% Similarity=0.308 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
|++.|.+++..+ .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+++... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999999875 468999999999999999999999999999999999999999999999987665 789999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+|+|++.+++||+||++|++..|.||+||++|.|+... +|.|++....+
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 99999999999999999999999999999999997654 45566766543
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=206.29 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=170.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
.+.+.|+..+||+|||.+++..+. +. ...+||++|+..+ .|+.+.+.+.+. ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 466789999999999977654433 22 2358999999766 667777766553 33444445321
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-hHHHHHHhhcccc---cccccccCCCCCHHHHHH
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQSSH---RLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~~---RLLLTGTPLQNnLeELwS 1262 (2693)
...+.+|+|+|+++|... ..+...++++|||||||.+--... .+...+..+...+ .+++|||+-..
T Consensus 294 ~~~~~~IlV~TPGrLl~~---~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~------- 363 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLAD---GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS------- 363 (666)
T ss_dssp ECCCCSEEEEEHHHHHHT---TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC-------
T ss_pred ccCCCCEEEECcHHHHhC---CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc-------
Confidence 246789999999999652 345666799999999987632211 1333334443322 46779998430
Q ss_pred HhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeecc
Q 000047 1263 LLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCE 1342 (2693)
Q Consensus 1263 LLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ce 1342 (2693)
+ .. ..|...+..+...
T Consensus 364 ---------i----------~~---------------------------------------------~~p~i~~v~~~~~ 379 (666)
T 3o8b_A 364 ---------V----------TV---------------------------------------------PHPNIEEVALSNT 379 (666)
T ss_dssp ---------C----------CC---------------------------------------------CCTTEEEEECBSC
T ss_pred ---------c----------cc---------------------------------------------CCcceEEEeeccc
Confidence 0 00 0000000000000
Q ss_pred ccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHh
Q 000047 1343 ASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 1422 (2693)
Q Consensus 1343 LSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kL 1422 (2693)
.. -.++ .. .+ . +.
T Consensus 380 ---------------------~~----------------i~~~--------~~---------~~----~-------l~-- 392 (666)
T 3o8b_A 380 ---------------------GE----------------IPFY--------GK---------AI----P-------IE-- 392 (666)
T ss_dssp ---------------------SS----------------EEET--------TE---------EE----C-------GG--
T ss_pred ---------------------ch----------------hHHH--------Hh---------hh----h-------hh--
Confidence 00 0000 00 00 0 00
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
...+.++|||++....++.|.++|...|+.+..|||+++.++ |.++.. .+||+|+++++|||+. +++||
T Consensus 393 ~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI 461 (666)
T 3o8b_A 393 AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVI 461 (666)
T ss_dssp GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEE
T ss_pred hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEE
Confidence 114779999999999999999999999999999999999765 333332 4899999999999986 99998
Q ss_pred ----------Eec-----------CCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1503 ----------IFD-----------TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1503 ----------iyD-----------ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+|| .|.++..|+||+||++| |..- . |.|++....+
T Consensus 462 ~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 462 DCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp ECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred ecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 677 77788999999999999 6542 2 7788776543
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=178.10 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=107.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.++|.. .+.++||||++...++.|.++|...|+.+..++|.++..+|.++++.|+++... +||+|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45688888888864 356899999999999999999999999999999999999999999999987665 799999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
++++|||++.+++||+||++||+..|+||+||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999987644 4455543
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=187.64 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+++..|...|..+...+.++||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 4577777777777777889999999999999999999999999999999999999999999999877655 8999999
Q ss_pred cccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1489 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+++|||++.+++||+||. +|++..|+|++||++|.|.. .++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCCC
Confidence 999999999999999998 89999999999999998633 4555666554
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=197.40 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=94.3
Q ss_pred eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC-
Q 000047 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT- 1506 (2693)
Q Consensus 1428 KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp- 1506 (2693)
..||||.....++.+.+.|...++.+..+||+++.++|.++++.|+.++..+ -+||+|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~-~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPC-KILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSC-CEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCe-EEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 4478898899999999999999999999999999999999999999833222 279999999999999 9999999999
Q ss_pred -------------CCCccchhhhhhhhcccCCc-ccEEEEEEEeC
Q 000047 1507 -------------DWNPQVDLQAQARAHRIGQK-RDVLVLRFETV 1537 (2693)
Q Consensus 1507 -------------pWNP~~diQAIGRAHRIGQk-KeV~VyRLIT~ 1537 (2693)
+++...+.|+.||++|.|.. ....||.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 34667766543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=181.31 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=110.6
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHH
Q 000047 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFW 1162 (2693)
Q Consensus 1084 ~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKw 1162 (2693)
....+..|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||.++|.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 333457999999999987654 4569999999999999998887653 4579999998 6778999999995
Q ss_pred CCCCc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1163 APRIH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1163 aPsLk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
++. +..+.|... ...+|+|+||+.+..... .+ ...|++|||||||++.+.. +.+.+..+.
T Consensus 157 --~~~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~--~~-~~~~~llIiDEaH~l~~~~--~~~i~~~~~ 217 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAES--YVQIAQMSI 217 (237)
T ss_dssp --CGGGEEEESSSCB------------CCCSEEEEEHHHHHHTHH--HH-TTTCSEEEEECSSCCCTTT--HHHHHHTCC
T ss_pred --CCCeEEEEeCCCC------------CcCCEEEEeHHHHHhhHH--Hh-cccCCEEEEECCccCCChH--HHHHHHhcc
Confidence 466 777777532 256899999999976432 22 2469999999999997654 334556678
Q ss_pred ccccccccccCCCCCH
Q 000047 1242 SSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnL 1257 (2693)
..++|+|||||.+++-
T Consensus 218 ~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 218 APFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEEEESCC----
T ss_pred CCEEEEEecCCCCCCC
Confidence 8899999999987654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=168.45 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+.+|.++|..+ .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+++... +||+|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3899999988764 467999999999999999999999999999999999999999999999987665 79999999
Q ss_pred ccccCccccCEEEEecCC------CCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1490 GVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDpp------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++|||++.+++||+||++ |++..|+||+||++|.|+. -.+|.|++...
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678899999999999954 45677777665
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=210.31 Aligned_cols=329 Identities=16% Similarity=0.131 Sum_probs=195.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC--------CCCCEEEEecCch-HHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN--------DRGPFLVVVPSSV-LPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~--------~~gP~LIVVPtSL-L~QW~eEf 1159 (2693)
.+|.+.|.+++..+ ++.+.|.+++.+||+|||++|...|...+.... ..+.+|+|+|..- ..+-.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 47899999988754 457889999999999999998766655543321 2345899999754 45566777
Q ss_pred HHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc--ccccCccEEEEccccccccccchHH-
Q 000047 1160 NFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK--LSKIQWHYIIIDEGHRIKNASCKLN- 1234 (2693)
Q Consensus 1160 eKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~--L~kikWd~VIIDEAHRIKN~sSKls- 1234 (2693)
.+.+. +++|..+.|+..... ......+|+|||++.+.....+.. -......+|||||+|.+.+...-..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~------~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK------EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC------TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc------cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHH
Confidence 65443 567888888643211 112468999999998743221111 1123468999999998865321111
Q ss_pred ----HHHH---hh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ----ADLK---HY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 ----raLk---~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
+.++ .. ...++|+||||- .|..| |.+|+... ...
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl--~N~~d------------------vA~wL~~~--------~~~---------- 270 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATL--PNYED------------------VATFLRVD--------PAK---------- 270 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSC--TTHHH------------------HHHHTTCC--------HHH----------
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeccc--CCHHH------------------HHHHhCCC--------CCC----------
Confidence 1111 11 223578999994 23444 44444320 000
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
. + |.+. ....|-..+ +++.+.-....+ ....+.
T Consensus 271 ------~-~--~~~~------~~~RPvpL~~~~~~~~~~~~~~-----------------------~~~~~~-------- 304 (1724)
T 4f92_B 271 ------G-L--FYFD------NSFRPVPLEQTYVGITEKKAIK-----------------------RFQIMN-------- 304 (1724)
T ss_dssp ------H-E--EECC------GGGCSSCEEEECCEECCCCHHH-----------------------HHHHHH--------
T ss_pred ------C-e--EEEC------CCCccCccEEEEeccCCcchhh-----------------------hhHHHH--------
Confidence 0 0 0000 001121111 111111000000 000000
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-----------------
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----------------- 1448 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----------------- 1448 (2693)
..+.+.+.+ ...++.+||||..+..++.+..+|..
T Consensus 305 ---------------------------~~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~ 356 (1724)
T 4f92_B 305 ---------------------------EIVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA 356 (1724)
T ss_dssp ---------------------------HHHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTT
T ss_pred ---------------------------HHHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchh
Confidence 001111111 12356788888776544433333321
Q ss_pred --------------------cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----e
Q 000047 1449 --------------------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----F 1504 (2693)
Q Consensus 1449 --------------------rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----y 1504 (2693)
..+.+...||+++.++|..+.+.|+++.-. +|++|..++.||||++.+.||. |
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~ 433 (1724)
T 4f92_B 357 STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVY 433 (1724)
T ss_dssp CSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEE
T ss_pred HHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEe
Confidence 123467889999999999999999988766 7999999999999998887773 6
Q ss_pred cCC------CCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1505 DTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1505 Dpp------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
|+. .++..+.|++|||+|.|....-.++.++..+..+
T Consensus 434 ~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 434 SPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp ETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred cCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 654 4688999999999999987666666666665443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=177.78 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+.|......+.+|||||......+.|...|...|+++..|+|.....+|.-+...|..+ . ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e---EEEEcc
Confidence 34699999999988777789999999999999999999999999999999985544444444556433 3 899999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
++|+|+|+. ...+||+||.|-++..|.|++||++|.|..-..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999997 567999999999999999999999999976543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=170.28 Aligned_cols=164 Identities=12% Similarity=0.167 Sum_probs=117.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|++||.+++.+++. +.++|++++||+|||++++..+...+........+|||||. .++.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998875 67899999999999999887777665433334469999998 66688999999986 46
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-c--chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-S--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-s--SKlsraLk~Lk- 1241 (2693)
+++..+.|........ ..+.....+|+|+|++.+........+...++++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 7888888865433221 2223356799999999997655444455667899999999999653 1 12222333333
Q ss_pred ccccccccccCCCCCHHHH
Q 000047 1242 SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeEL 1260 (2693)
..++++|||||- +.+.++
T Consensus 190 ~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 190 EKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp SSEEEEEESCCC-TTTHHH
T ss_pred cCeEEEEEeecC-HHHHHH
Confidence 456799999994 334443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=170.14 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=114.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+++.. ..+.++||||.....++.|..+|...|+.+..+||+++..+|..+++.|+.+... +||+|+
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 35699999999974 3478999999999999999999999999999999999999999999999987665 799999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
++++|||++.+++||+||++|++..|.||+||++|.|+.. .+|.|++.. |...+...+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~ 148 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALER 148 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999764 455566654 3344444433
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=167.97 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=115.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecC-chHHHHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPS-SVLPGWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPt-SLL~QW~eEfeKwaP 1164 (2693)
..|++||.+++.++.. +.++|+..+||+|||++++..+...+... .....+|||||. .++.||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4799999999998775 67899999999999998776665544321 233468999998 667899999999998
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
.+++..+.|......... ....+.+|+|+|++.+........+...+|++|||||||++.+.. ..+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~ 174 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKE---ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174 (207)
T ss_dssp TSCEEEECSSSCSHHHHH---HHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT
T ss_pred cceEEEEECCCChHHHHH---HhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc
Confidence 888888887654332111 112468999999999876554444555678999999999986543 23334444443
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..+.++||||+
T Consensus 175 ~~~~i~~SAT~ 185 (207)
T 2gxq_A 175 SRQTLLFSATL 185 (207)
T ss_dssp TSEEEEECSSC
T ss_pred cCeEEEEEEec
Confidence 34579999998
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-17 Score=177.97 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=107.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.++|.. ..+.++||||+....++.|.++|...|+.+..++|+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888875 3467999999999999999999999999999999999999999999999877654 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+++|||++.+++||+||++|++..|+||+||++|.|+...+.++
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 99999999999999999999999999999999999987665443
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=166.24 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|++||.+++.++.. +.+.|+..+||+|||++++..+...+........+|||||. .+..||.+++.+|. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998764 77899999999999998765554443333334569999998 66789999999986 36
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc---chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS---CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s---SKlsraLk~Lk- 1241 (2693)
+++..+.|......... ...+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKT----RLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHHH----HTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHHH----hccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 78888888654432211 12468999999999977554444555678999999999996543 33334445554
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..++++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45579999996
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=166.48 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--- 1164 (2693)
..+++||.+++.++.. +.++|+..+||+|||++++..+...+........+|||||+ .+..||.+++.+++.
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4689999999998876 68899999999999998776666554433334569999998 556889999988864
Q ss_pred ---CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHh
Q 000047 1165 ---RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKH 1239 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~ 1239 (2693)
.+.+..+.|........ .......+|+|+|++.+........+...++++|||||||++.+.. ..+...+..
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 177 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 177 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHT
T ss_pred cccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHh
Confidence 46677777765443211 1223578999999999976554444555678999999999997543 234444455
Q ss_pred hc-ccccccccccCCCCCHHHH
Q 000047 1240 YQ-SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1240 Lk-a~~RLLLTGTPLQNnLeEL 1260 (2693)
+. ..++++||||+ .+.+.++
T Consensus 178 ~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 178 MPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp SCTTCEEEEEESCC-CGGGHHH
T ss_pred CCcccEEEEEecCC-CHHHHHH
Confidence 54 34579999997 4444443
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=166.40 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=93.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecC-chHHH-HHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPS-SVLPG-WESEINFW 1162 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPt-SLL~Q-W~eEfeKw 1162 (2693)
+..|++||.+++.+++. +.++|+.++||+|||++++.++..++... ...+++|||||. .++.| |.+++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 35899999999998874 67899999999999999998887766542 224569999998 55578 99999998
Q ss_pred CC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc------ccccCccEEEEccccccccc
Q 000047 1163 AP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK------LSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1163 aP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~------L~kikWd~VIIDEAHRIKN~ 1229 (2693)
.. .+.+..+.|......... ......+|+|+||+.+........ +...+|++|||||||++...
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HTTTSCEEECCC---CCCCHH---HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCceEEEEeCCcccchhHH---hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 75 467777777543221110 111358999999999976443321 34467899999999999643
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-15 Score=162.13 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=114.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--- 1164 (2693)
..|++||.+++..+.. +.++|+..+||+|||++++..+...+........+|||||. .++.||.+++.+++.
T Consensus 24 ~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998764 67899999999999998876665544333334469999998 556889999988864
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
.+.+..+.|......... ......+|+|+|++.+........+...++++|||||||++.... ..+...+..+.
T Consensus 100 ~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~ 176 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIM---RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176 (206)
T ss_dssp SCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT
T ss_pred CceEEEEeCCccHHHHHH---hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc
Confidence 677888888765443322 123578999999999976555444555678999999999986633 22233334443
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..++++||||+
T Consensus 177 ~~~~l~~SAT~ 187 (206)
T 1vec_A 177 NRQILLYSATF 187 (206)
T ss_dssp TCEEEEEESCC
T ss_pred cceEEEEEeeC
Confidence 45679999998
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-13 Score=175.62 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3567777777777777789999999999999999999999999999999999999999999999877655 8999999
Q ss_pred cccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1489 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
+++|||++.+++||+||. ++++..|+|++||++|.+ .-.++.|++..+.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 999999999999999998 899999999999999973 3456666766543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=162.82 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=112.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+... .....+|||||. .+..||.+++.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4789999999998874 78899999999999999877665544321 123458999998 66688999999998
Q ss_pred CC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1164 PR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1164 Ps--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
.. +.+..+.|......... ...+.+|+|+|++.+....... .+...+|++|||||||++.+.. ..+...+.
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 197 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAE----RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE 197 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHH----HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCHHHHHH----hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHH
Confidence 64 67778888654432221 1247899999999997644322 3445678999999999997643 34444455
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ..++++||||+
T Consensus 198 ~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 198 NLPKKRQTLLFSATQ 212 (236)
T ss_dssp TSCTTSEEEEEESSC
T ss_pred hCCCCCeEEEEEeeC
Confidence 554 34579999998
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=163.71 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---------CCCCEEEEecC-chHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---------DRGPFLVVVPS-SVLPGWESE 1158 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---------~~gP~LIVVPt-SLL~QW~eE 1158 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+.... ....+|||||. .+..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998875 678999999999999998877665554322 12468999998 566899999
Q ss_pred HHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHH
Q 000047 1159 INFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1159 feKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
+.+|+. .+.+..+.|......... ......+|+|+|++.+........+....+++|||||||++.+.. ..+.
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIR---EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHH---HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 999865 366677777654332221 123578999999999987655444555678999999999986543 3344
Q ss_pred HHHHhhc-----ccccccccccC
Q 000047 1235 ADLKHYQ-----SSHRLLLTGTP 1252 (2693)
Q Consensus 1235 raLk~Lk-----a~~RLLLTGTP 1252 (2693)
..+..+. ...+++||||+
T Consensus 197 ~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 197 KIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHhhccCCCCCCcEEEEEEEeC
Confidence 4444322 33579999998
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=161.04 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+........+|||||. .+..||.+++.+++. +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 3799999999998764 67899999999999998655554444333344569999998 556889999999875 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
+.+..+.|........ ......+|+|+|++.+........+...++++|||||||++.+.. ..+...+..+. .
T Consensus 111 ~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~ 186 (224)
T 1qde_A 111 IKVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 186 (224)
T ss_dssp CCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCcc
Confidence 6777777765433221 112348999999999876554445555678999999999986543 22334444443 3
Q ss_pred cccccccccCC
Q 000047 1243 SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 ~~RLLLTGTPL 1253 (2693)
.++++||||+-
T Consensus 187 ~~~i~lSAT~~ 197 (224)
T 1qde_A 187 TQVVLLSATMP 197 (224)
T ss_dssp CEEEEEESSCC
T ss_pred CeEEEEEeecC
Confidence 45789999983
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=164.93 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=115.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++..++. +.+.|+..+||+|||++++..+...+........+|||||. .+..||.++|.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999998774 68899999999999999877776655554444569999998 556889999998865 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
+.+..+.|......... ....+.+|+|+|++.+...... ..+....+++|||||||++.+.. ..+...+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 216 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSL---ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216 (249)
T ss_dssp CCEEEECTTSCHHHHHH---HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS
T ss_pred eeEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC
Confidence 67777777654332221 1235789999999999764432 23445578999999999987643 23344444443
Q ss_pred ccccccccccCC
Q 000047 1242 SSHRLLLTGTPL 1253 (2693)
Q Consensus 1242 a~~RLLLTGTPL 1253 (2693)
..++++||||+-
T Consensus 217 ~~~~l~~SAT~~ 228 (249)
T 3ber_A 217 DRKTFLFSATMT 228 (249)
T ss_dssp SSEEEEEESSCC
T ss_pred CCeEEEEeccCC
Confidence 456799999983
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=170.85 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=109.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+++|.+++.... +.++||||.....++.|...|...|+.+..|||.++..+|..+++.|+.+..+ +||+|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 3569999999998654 78999999999999999999999999999999999999999999999988765 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++++|||++.+++||+||++|++..|.||+||++|.|+. -.+|.|++...
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 999999999999999999999999999999999999976 45566666553
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=164.26 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=110.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+ .+..||.+++.+++. .
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 3699999999998774 67899999999999998776666554333344569999998 566889999999975 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a 1242 (2693)
+.+..+.|........ ..+.....+|+|+|++.+........+....+++|||||||++... ...+...+..+. .
T Consensus 127 ~~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 204 (237)
T 3bor_A 127 ATCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTS 204 (237)
T ss_dssp CCEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred ceEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCC
Confidence 5666677655433221 1233345899999999987655444455567899999999998543 334455555554 3
Q ss_pred cccccccccCC
Q 000047 1243 SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 ~~RLLLTGTPL 1253 (2693)
...++||||+-
T Consensus 205 ~~~i~~SAT~~ 215 (237)
T 3bor_A 205 IQVVLLSATMP 215 (237)
T ss_dssp CEEEEECSSCC
T ss_pred CeEEEEEEecC
Confidence 45689999983
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=154.82 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=107.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCc-hHHHHHHHHHHHCCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSS-VLPGWESEINFWAPR- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtS-LL~QW~eEfeKwaPs- 1165 (2693)
..+++||.+++..+.. +.+.|+..+||+|||++++..+...+.... ....+|||||.. +..||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3699999999988765 678999999999999998766655554322 233589999985 568899999999763
Q ss_pred -CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEcccccccccc-----chHHHHH
Q 000047 1166 -IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNAS-----CKLNADL 1237 (2693)
Q Consensus 1166 -LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~s-----SKlsraL 1237 (2693)
+.+..+.|....... .......+++|+|+|++.+....... .+...++++|||||||++.... ..+...+
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~ 203 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKK--FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 203 (245)
T ss_dssp CCCEECCCHHHHHHTT--TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHH
T ss_pred CceEEEEecCccHHHH--hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHH
Confidence 445444443222111 11223467899999999997644322 3445578999999999996532 2222333
Q ss_pred Hhh--cccccccccccC
Q 000047 1238 KHY--QSSHRLLLTGTP 1252 (2693)
Q Consensus 1238 k~L--ka~~RLLLTGTP 1252 (2693)
..+ ...++++||||.
T Consensus 204 ~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 204 LACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHCCCTTCEEEEEESSC
T ss_pred HhcCCCCcEEEEEeccC
Confidence 333 234669999998
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=153.76 Aligned_cols=157 Identities=14% Similarity=0.215 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEecCc-hHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVPSS-VLPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVPtS-LL~QW~eEfeK 1161 (2693)
.++++||.+++..+.. +.+.|+..+||+|||+.++..+...+... .....+|||||+. +..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 4799999999988764 78899999999999998876655544321 1334589999985 55889999999
Q ss_pred HC-CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1162 WA-PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1162 wa-PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. ..+.+..+.|........ .....+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 193 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILL 193 (228)
T ss_dssp HCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHH
Confidence 85 467777777765433211 1123568999999999977554445555678999999999987643 23344444
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ....++||||.
T Consensus 194 ~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 194 DVRPDRQTVMTSATW 208 (228)
T ss_dssp HSCSSCEEEEEESCC
T ss_pred hCCcCCeEEEEEeeC
Confidence 554 34568899996
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=150.31 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=110.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCCEEEEecCc-hHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGPFLVVVPSS-VLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP~LIVVPtS-LL~QW~eEfeKw 1162 (2693)
..+++||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. +..||.+++.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 3689999999988775 78899999999999999877666555432 2234589999985 557898888887
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. ++.+..++|......... ....+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~ 202 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIR---DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 202 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCceEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHH
Confidence 53 567777777654332221 112468999999999976554444555678999999999987643 22333333
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ....+++|||.
T Consensus 203 ~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 203 QIRPDRQTLMWSATW 217 (242)
T ss_dssp TSCSSCEEEEEESCC
T ss_pred hCCccceEEEEEeec
Confidence 443 34568999996
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=154.11 Aligned_cols=92 Identities=11% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccccc
Q 000047 1413 EMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491 (2693)
Q Consensus 1413 elLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGe 1491 (2693)
..+.+.|.++ ...+.++|||+.....++.+.+.|.. +. +.+.|.. .+|.+++++|+.+. . ..|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-Y-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-C-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-e-EEEEEecCceec
Confidence 4455555554 34567999999999999999888864 33 3455554 47999999998743 2 233347899999
Q ss_pred ccCccc----cCEEEEecCCCCcc
Q 000047 1492 GVNLQA----ADTVIIFDTDWNPQ 1511 (2693)
Q Consensus 1492 GLNLQa----ADtVIiyDppWNP~ 1511 (2693)
|||+.+ +..||+++.|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999997 89999999997444
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=151.53 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=110.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC----CCCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN----DRGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~----~~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+++|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+ .|..||.+++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3699999999988776 678999999999999998776665554321 23458999998 55688999999987
Q ss_pred C--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1164 P--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1164 P--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
. ...+..+.|......... ....+.+|+|+|++.+....... .+...++++|||||||++.... ..+...+.
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~ 227 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQ---KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 227 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHH---HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHH
Confidence 5 355666666554332221 11235899999999986543222 2334567999999999987643 23334444
Q ss_pred hhc-ccccccccccCC
Q 000047 1239 HYQ-SSHRLLLTGTPL 1253 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTPL 1253 (2693)
.+. ....++||||+-
T Consensus 228 ~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 228 LLPTRRQTMLFSATQT 243 (262)
T ss_dssp HSCSSSEEEEECSSCC
T ss_pred hCCCCCeEEEEEecCC
Confidence 453 345699999983
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=149.32 Aligned_cols=150 Identities=21% Similarity=0.171 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwa 1163 (2693)
|...++-|..|+-.|+. +. |....||.|||++++..++..... ...++||+|+..|. .|...|.+|+
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999876653 33 888999999999875544322221 22489999998873 3777777776
Q ss_pred CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH-----hcc--CCCccccc---CccEEEEccccccccccchH
Q 000047 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM-----NKH--DRPKLSKI---QWHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1164 PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li-----k~~--Dr~~L~ki---kWd~VIIDEAHRIKN~sSKl 1233 (2693)
++.+.++.|......+.. ....+|++.|...|. ... ....+... ...++||||+|+|.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~~-----ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe--- 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRK-----AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE--- 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHHH-----HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS---
T ss_pred -CCeEEEEeCCCCHHHHHH-----HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC---
Confidence 577777666543221111 125799999988872 211 11123333 67899999999874221
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhh
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
+..-|++|| |.... ..+|..++
T Consensus 219 --------artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 219 --------ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp --------TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred --------CCCCeeeeC-CCccc-hHHHHHHH
Confidence 223489999 87766 44444433
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=144.87 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=105.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa---P 1164 (2693)
..++++|.+++..++. ..+.+.|+...||+|||+.++..+...+........+|||||+.. ..|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 4789999999987653 123788999999999999876555544433333335899999855 477888887765 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc---hHHHHHHhh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~L 1240 (2693)
.+.+..+.|...... ......+|+|+|++.|...... ..+...++.+|||||||+|.+... .....+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhh------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 677777777543211 1135679999999999765533 334445789999999999865221 122222233
Q ss_pred c-ccccccccccC
Q 000047 1241 Q-SSHRLLLTGTP 1252 (2693)
Q Consensus 1241 k-a~~RLLLTGTP 1252 (2693)
. ....+++|||+
T Consensus 265 ~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 265 PRNCQMLLFSATF 277 (300)
T ss_dssp CTTCEEEEEESCC
T ss_pred CCCCEEEEEeccC
Confidence 2 34568999998
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-10 Score=143.51 Aligned_cols=134 Identities=22% Similarity=0.203 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP--s 1165 (2693)
.++||+|.+.+..+...+..+.++|+...||+|||+.++..+.. ...++||++|+.. ..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 57999999999877777778889999999999999988766554 2356999999855 5789999987642 5
Q ss_pred CcEEEEcCChHH--------------------------------HHHHHH----------------hhhhcCCccEEEEc
Q 000047 1166 IHKIVYCGPPEE--------------------------------RRRLFK----------------EKIVHQKFNVLLTT 1197 (2693)
Q Consensus 1166 LkVIvy~Gs~~e--------------------------------Rk~l~k----------------e~i~~~kfdVVITT 1197 (2693)
+++++..|.... ...++. ........+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677776663211 000100 01112467999999
Q ss_pred HHHHHhccCCCccc-ccCccEEEEcccccccc
Q 000047 1198 YEYLMNKHDRPKLS-KIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1198 YE~Lik~~Dr~~L~-kikWd~VIIDEAHRIKN 1228 (2693)
|.+|.....+..+. .....+|||||||+|-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998643222222 23567899999999977
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-08 Score=128.82 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa--Ps 1165 (2693)
.++||+|.+.+..+...+.++.++|+...||+|||+.++..+...+... ..++||++|+.. ..|+.+++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 3679999999988877777899999999999999999887665554332 246899999855 577889987663 25
Q ss_pred CcEEEEcC
Q 000047 1166 IHKIVYCG 1173 (2693)
Q Consensus 1166 LkVIvy~G 1173 (2693)
+++++..|
T Consensus 80 ~~~~~l~g 87 (620)
T 4a15_A 80 IRAIPMQG 87 (620)
T ss_dssp CCEEECCC
T ss_pred eEEEEEEC
Confidence 66655544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-08 Score=109.42 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..+++||.+++..+.. +...++..++|+|||.+...++......... ...+|+++|...+ .+..+.+...+..
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3588999999988765 7788999999999997665555443332222 2247889998665 4566666655431
Q ss_pred ---CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc-ccccch--HHHH-HH
Q 000047 1166 ---IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI-KNASCK--LNAD-LK 1238 (2693)
Q Consensus 1166 ---LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI-KN~sSK--lsra-Lk 1238 (2693)
..+. |.- + +.........+|+|+|++.+.+.... ...++++|||||||++ -+.... ..+. +.
T Consensus 136 ~~~~~~g-~~~----~---~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCG-YSV----R---FESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEE-EEE----T---TEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEE-Eee----c---hhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 1111 110 0 01111125678999999988765432 2356799999999984 222211 1122 22
Q ss_pred hhcccccccccccC
Q 000047 1239 HYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTP 1252 (2693)
.+.....+++|||+
T Consensus 205 ~~~~~~~il~SAT~ 218 (235)
T 3llm_A 205 AYPEVRIVLMSATI 218 (235)
T ss_dssp HCTTSEEEEEECSS
T ss_pred hCCCCeEEEEecCC
Confidence 23345679999997
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=85.73 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA 1163 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa 1163 (2693)
+.+..|-+.|+++|..++. ...-.||....|+|||.+.+.+|.+++..+ .++||++|+.. +.+..+.+....
T Consensus 185 ~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 3446799999999998775 223468889999999999999999888643 46999999866 455666565443
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0046 Score=78.01 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
..|-+.|.+++..++.....+. ..+|....|+|||..+.+++.++...+. ..+++++|+.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKK 88 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHH
Confidence 4799999999998876555444 6788899999999999888888876543 45899999976543
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0063 Score=79.78 Aligned_cols=150 Identities=21% Similarity=0.353 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +...++....|+|||.+...++.++... ...++||++|+... .+..+.+.+.. +.
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 4689999999987763 4456888999999999998888877642 34569999998765 44444454332 22
Q ss_pred EEEEcCChH-----------------------HHH-----------------HHHH------hhhhcCCccEEEEcHHHH
Q 000047 1168 KIVYCGPPE-----------------------ERR-----------------RLFK------EKIVHQKFNVLLTTYEYL 1201 (2693)
Q Consensus 1168 VIvy~Gs~~-----------------------eRk-----------------~l~k------e~i~~~kfdVVITTYE~L 1201 (2693)
++.+..... ... +.+. ........+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 221111000 000 0000 011124678999887665
Q ss_pred HhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1202 ik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 331 ~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC----GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cc----hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 32 34566789999999997765432 11222333567888888865
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0042 Score=80.88 Aligned_cols=131 Identities=20% Similarity=0.135 Sum_probs=82.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|-+.|.+++..+.. +...+|....|+|||.++.+++..+... ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 56799999999988763 5667889999999999888777766543 3568999999877665544321 11
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLL 1247 (2693)
...+ .+++.. .. . .+ ....-....+++|||||+|.+-.. .+...+..+....+++
T Consensus 256 a~Ti-------h~ll~~----~~-~-------~~----~~~~~~~~~~dvlIIDEasml~~~--~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTV-------HRLLGY----GP-Q-------GF----RHNHLEPAPYDLLIVDEVSMMGDA--LMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEH-------HHHTTE----ET-T-------EE----SCSSSSCCSCSEEEECCGGGCCHH--HHHHHHTTSCTTCEEE
T ss_pred HHHH-------HHHHcC----Cc-c-------hh----hhhhcccccCCEEEEcCccCCCHH--HHHHHHHhCcCCCEEE
Confidence 1100 001000 00 0 01 111123347899999999987432 3334444556677899
Q ss_pred ccccCCC
Q 000047 1248 LTGTPLQ 1254 (2693)
Q Consensus 1248 LTGTPLQ 1254 (2693)
|.|-|-|
T Consensus 311 lvGD~~Q 317 (574)
T 3e1s_A 311 LVGDTDQ 317 (574)
T ss_dssp EEECTTS
T ss_pred EEecccc
Confidence 9999976
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.012 Score=79.35 Aligned_cols=149 Identities=21% Similarity=0.335 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +...++....|+|||.+...++.+++.. ...++||++|+.... +-.+.+.... +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 4689999999987753 3456888999999999998888887643 335699999987654 3444444322 22
Q ss_pred EEEEcCChH------------------------HHHHH-----------------HH------hhhhcCCccEEEEcHHH
Q 000047 1168 KIVYCGPPE------------------------ERRRL-----------------FK------EKIVHQKFNVLLTTYEY 1200 (2693)
Q Consensus 1168 VIvy~Gs~~------------------------eRk~l-----------------~k------e~i~~~kfdVVITTYE~ 1200 (2693)
++.+ |... ..+++ +. ........+||++|...
T Consensus 427 vvRl-g~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 VVRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp EEEC-CCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred eEee-cccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 2211 1110 00000 00 00112356889988776
Q ss_pred HHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1201 Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
+.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 506 ~~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 506 AGD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GGC----TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred hCC----hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 542 23566789999999997764322 12233344567888888865
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=79.25 Aligned_cols=149 Identities=17% Similarity=0.267 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +.-.++....|+|||.+...++.+++... ..++||++|+... .+-.+.+.+.. +.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4688999999987753 34468889999999999988888877542 3469999998765 44555555442 22
Q ss_pred EEEEcCChH----------------------HHHH-----------------HHH------hhhhcCCccEEEEcHHHHH
Q 000047 1168 KIVYCGPPE----------------------ERRR-----------------LFK------EKIVHQKFNVLLTTYEYLM 1202 (2693)
Q Consensus 1168 VIvy~Gs~~----------------------eRk~-----------------l~k------e~i~~~kfdVVITTYE~Li 1202 (2693)
++.+..... .... .+. ........+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 222111000 0000 000 0111245689999887664
Q ss_pred hccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1203 k~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
. ..+.. .|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 511 ~----~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D----KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C----TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred h----HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 2 23444 89999999998764322 12223344567888888865
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.02 Score=75.03 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchHHHH-HHHHHHHCCCCcE-
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVLPGW-ESEINFWAPRIHK- 1168 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL~QW-~eEfeKwaPsLkV- 1168 (2693)
-+.|..++..++. +...|+....|+|||.++..++..+.... .....+++++|+...... .+.+..++..+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4779999976653 56778999999999988777776665432 223368999999776543 3333332110000
Q ss_pred -EEEcCChHHHHHHHHhhhhcCCccEEE-EcHH--HHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1169 -IVYCGPPEERRRLFKEKIVHQKFNVLL-TTYE--YLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1169 -Ivy~Gs~~eRk~l~ke~i~~~kfdVVI-TTYE--~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
....+.. ......+-++ .+.. .+.. .......+++||||||+.+. ...+...+..+....
T Consensus 227 ~~~~~~~~----------~~~~Tih~ll~~~~~~~~~~~----~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 227 DEQKKRIP----------EDASTLHRLLGAQPGSQRLRH----HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHA 290 (608)
T ss_dssp SCCCCSCS----------CCCBTTTSCC---------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTC
T ss_pred HHHHhccc----------hhhhhhHhhhccCCCchHHHh----ccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCC
Confidence 0000000 0000001000 0000 0111 11122378999999999553 223345556667778
Q ss_pred cccccccCCCC
Q 000047 1245 RLLLTGTPLQN 1255 (2693)
Q Consensus 1245 RLLLTGTPLQN 1255 (2693)
+++|-|-|-|-
T Consensus 291 ~liLvGD~~QL 301 (608)
T 1w36_D 291 RVIFLGDRDQL 301 (608)
T ss_dssp EEEEEECTTSG
T ss_pred EEEEEcchhhc
Confidence 89999988654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.073 Score=59.61 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.++.-.||.|||..++.++..+...+ ..++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 46788999999998887777665432 357888776
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.61 Score=58.32 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=87.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..|.|||+..+..+.. ....++.-.-+.|||..+.+++.+++... ....+++++|..-. ..+.+++..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 5799999998876631 34467777899999999888777755432 23458899997543 23445665543 3
Q ss_pred C-CcE-EEEcCChHHHHHHHHhhhh-cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-h
Q 000047 1165 R-IHK-IVYCGPPEERRRLFKEKIV-HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-Y 1240 (2693)
Q Consensus 1165 s-LkV-Ivy~Gs~~eRk~l~ke~i~-~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-L 1240 (2693)
. ++. +..... ..+. ..+..+.+.+- +...+.....+++|+||+|.+++. ..++.++.. +
T Consensus 237 ~ll~~~~~~~~~---------~~I~f~nGs~i~~lsa-------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~l 299 (385)
T 2o0j_A 237 DFLQPGIVEWNK---------GSIELDNGSSIGAYAS-------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVI 299 (385)
T ss_dssp TTTSCCEEEECS---------SEEEETTSCEEEEEEC-------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHH
T ss_pred HhhhhhhccCCc---------cEEEeCCCCEEEEEEC-------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHh
Confidence 2 111 100000 0010 11222222111 112345566899999999999863 234444432 3
Q ss_pred c--ccccccccccCCCCCHHHHHHHhhh
Q 000047 1241 Q--SSHRLLLTGTPLQNNLEELWALLNF 1266 (2693)
Q Consensus 1241 k--a~~RLLLTGTPLQNnLeELwSLLnF 1266 (2693)
. ...+++++.||-..+ .+|.+...
T Consensus 300 s~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 300 SSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred hcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 2 346788889996553 55555443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.38 Score=62.81 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..|.|||...+..+. .....++.-.-|.|||..+.+++.+++.... ...++++.+..-. ..+...+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999877652 2445677778999999988777776665433 3358999997543 33445666554 3
Q ss_pred C-CcE-EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-hc
Q 000047 1165 R-IHK-IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-YQ 1241 (2693)
Q Consensus 1165 s-LkV-Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-Lk 1241 (2693)
. +.. ....... ......+..+.+.+- +...+.....+++||||+|.+++.. .++.++.. +.
T Consensus 237 ~~~~~~~~~~~~~--------~i~~~nGs~i~~~s~-------~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~ 300 (592)
T 3cpe_A 237 DFLQPGIVEWNKG--------SIELDNGSSIGAYAS-------SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (592)
T ss_dssp TTTSCCEEEECSS--------EEEETTSCEEEEEEC-------CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHS
T ss_pred HhhccccccCCcc--------EEEecCCCEEEEEeC-------CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhc
Confidence 2 110 0000000 000011222221110 1122344568999999999997742 45555543 32
Q ss_pred --ccccccccccCCCC
Q 000047 1242 --SSHRLLLTGTPLQN 1255 (2693)
Q Consensus 1242 --a~~RLLLTGTPLQN 1255 (2693)
...++++++||-..
T Consensus 301 ~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 301 SGRRSKIIITTTPNGL 316 (592)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCceEEEEeCCCCc
Confidence 24678899999544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.19 Score=58.47 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=28.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
.+.-.++.-+||.|||..++.++..+...+ ..++|+.|.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEecc
Confidence 333346789999999999888887765432 3478887653
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.24 Score=64.51 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHH-HHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLP-GWESEINFW 1162 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~-QW~eEfeKw 1162 (2693)
.|-+.|.++|.. .....++-...|+|||.+.+.-+.+++...+ ....+|+|+++.... +..+.+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 688999999961 2344566677999999999999999987643 334689999986654 345555554
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.35 Score=58.55 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
++|+|.+.+..+...+.++. ..+|..+.|+|||..+.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 67999999988888776654 2588899999999999988887754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.64 Score=55.50 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=29.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~ 1156 (2693)
.+.+|..+.|+|||..+-+++..+... ..+++.|....+...+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~ 81 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMV 81 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHH
Confidence 467899999999999887777766543 34555555433333333
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.21 Score=58.70 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCch
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSV 1151 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSL 1151 (2693)
+.+|..+.|+|||..+-+++..+...... ..+++.|.+..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 56899999999999998887776543322 335555554443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.73 E-value=1.4 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.7
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999998877776654
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.57 Score=54.45 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++.-.||.|||..+|.++..+... ...+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 468899999999988887766543 33578888763
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.76 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++.-.||.|||..++.++..+... ...++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 677899999999888887766533 2347888876
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=90.46 E-value=0.73 Score=51.38 Aligned_cols=40 Identities=18% Similarity=-0.070 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1096 leGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...+.++..+.. .+.+.+|..+.|+|||..+-+++..+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554443 3556789999999999988777766543
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.48 Score=56.36 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred CccEEEEccccccc--cccchHHHHHHhhcccccccccccCCC
Q 000047 1214 QWHYIIIDEGHRIK--NASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1214 kWd~VIIDEAHRIK--N~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
...+|||||+|.+. .....+.+.+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999995 233344455555556677888777643
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.20 E-value=1.4 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 478899999999998877776654
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.96 E-value=2 Score=45.59 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+.+|..+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 55789999999999998877776654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=4 Score=44.44 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhh-----cCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1092 REYQMSGLRWLVSLYN-----NQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~-----n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.|.+++.++..... .+.+.+|.-+.|+|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578888888876553 345567889999999998877777665
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=87.59 E-value=2.4 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.+|..+.|+|||..+.+++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999888777665
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.45 E-value=1.1 Score=54.18 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~ 1132 (2693)
|.+.+..+.....++. ..|+..+.|+|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455655655555443 4588999999999888777653
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=87.33 E-value=0.72 Score=58.71 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=63.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
++...-|+|||.....++. ..+.|||+|+..+ ..|.+.+.+... . ..-
T Consensus 165 ~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~---------------------~--~~~ 213 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASGI---------------------I--VAT 213 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSC---------------------C--CCC
T ss_pred EEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCc---------------------c--ccc
Confidence 5778899999976644431 1457999998665 568777632210 0 001
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
++-+.|++.+.... .......+++||||||-.+- ...+...+..+.. .+++|.|=|-|
T Consensus 214 ~~~V~T~dsfL~~~--~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 214 KDNVRTVDSFLMNY--GKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp TTTEEEHHHHHHTT--TSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred cceEEEeHHhhcCC--CCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCccc
Confidence 12356777665422 12223458999999998652 2223333334444 88999998854
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.25 E-value=0.45 Score=50.68 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
.++......+.+.+|..+.|+|||..|-++..+. .....|++|-|
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~---~~~~~~~v~~~ 59 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG---RNAQGEFVYRE 59 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS---TTTTSCCEEEE
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC---CccCCCEEEEC
Confidence 3343444567788999999999998875543321 12345666434
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.85 E-value=0.95 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.+|..+.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999998887777664
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=86.51 E-value=1.1 Score=51.85 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
..+......+.+.+|..++|+|||..+-++...+ .....|++.|.-..
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~---~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS---TTTTSCEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc---CccCCCeEEEecCC
Confidence 3344444556788999999999998775554332 12235665554333
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=2.1 Score=47.05 Aligned_cols=43 Identities=23% Similarity=0.117 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
++..++.+...+.........+|..+.|+|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444443333211112468899999999988776665553
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=86.38 E-value=1.5 Score=46.70 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999988877776643
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=86.12 E-value=2 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++...||.|||..+|..+..+.. ....+||+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 56789999999888877765543 33457888875
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=85.95 E-value=0.66 Score=55.91 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHHhhcCC----CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL----NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l----nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
.-++..++.+.++......+. +.+|..+.|+|||..+-++...+ ....|++.+....
T Consensus 47 vG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAGSE 107 (368)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEGGG
T ss_pred cChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccchh
Confidence 345667777777776665543 56899999999999888777665 2234566555433
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=84.18 E-value=1.5 Score=50.97 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=27.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
...+.+|..+.|+|||..+-+++..+ ..+++.|....++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSELVKK 90 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGGCCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHHHHh
Confidence 34567899999999998886665443 345666655444433
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=83.80 E-value=4.1 Score=51.45 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.+.+|..+.|+|||..+-++..++..... ..+++.|...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHH
Confidence 45689999999999988777776654422 2345544433
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=82.35 E-value=3 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+.+|..+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999887776654
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=81.99 E-value=4.3 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~L 1133 (2693)
.+|..+.|+|||..+-+++..+
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999887776655
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.99 E-value=5.4 Score=45.49 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+.+|..+.|+|||..+-++...+ ..+++.|....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 456889999999999887776544 345666655444
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=81.44 E-value=2.3 Score=52.11 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+.+|..+.|+|||..+-+++..+ ..+++.|....+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l 120 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDL 120 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHH
Confidence 467899999999999988777655 345555544433
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=81.24 E-value=1.6 Score=52.43 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.+|..+.|+|||..+-+++..+ ..+++.|....++..|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 456899999999999887776553 3456666554444433
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.19 E-value=4 Score=50.26 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.+|..+.|+|||..+-+++..+ ..+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3567899999999999887665432 3567777666655444
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.66 E-value=5.8 Score=48.50 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=28.9
Q ss_pred HHHHHHHH-HHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1093 EYQMSGLR-WLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1093 PYQleGL~-WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+-|..-|. ++..... .+.+.+|...+|+|||.++-.++..+...
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34544443 3333333 23455789999999999998888877654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=80.64 E-value=1.5 Score=52.47 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.7
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...+.+|..+.|+|||..+-.++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456788999999999988777766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2693 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 6e-53 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 3e-47 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 3e-42 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 2e-27 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-18 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 5e-13 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 9e-13 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 3e-06 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-05 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.002 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.003 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 184 bits (466), Expect = 6e-53
Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 29/253 (11%)
Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
+P ++ LR YQ+ G W+ + LAD+MGLGKT+Q IA+ +
Sbjct: 5 EPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELT- 62
Query: 1142 PFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
P LV+ P SVL WE E++ +AP + V+ + + + ++++LTTY L
Sbjct: 63 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIK--------LEDYDIILTTYAVL 114
Query: 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELW 1261
+ +L +++W YI+IDE IKN K+ +K +S +R+ LTGTP++N +++LW
Sbjct: 115 LRDT---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLW 171
Query: 1262 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321
+++ FL P + S +F F P + + + +E L ++ PF+LR
Sbjct: 172 SIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE--------------LKAIISPFILR 217
Query: 1322 RLK--HKVENELP 1332
R K + N+LP
Sbjct: 218 RTKYDKAIINDLP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 170 bits (430), Expect = 3e-47
Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 19/250 (7%)
Query: 1088 GGKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
LR +Q G+++L N I+ADEMGLGKT+Q I LI L++ D P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1143 ----FLVVVPSSVLPGWESEINFWAP-RIHKIVYCGPPEERRR-----LFKEKIVHQKFN 1192
+VV PSS++ W +E+ W R+ + G ++ ++ +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
+L+ +YE + L K + +I DEGHR+KN+ + L + R+L++GTP
Sbjct: 173 ILIISYE--TFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230
Query: 1253 LQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312
+QN+L E ++L++F+ I ++++F + F P D D + + L
Sbjct: 231 IQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD--ADASDKDRAAGEQKLQELI 288
Query: 1313 QVLRPFVLRR 1322
++ ++RR
Sbjct: 289 SIVNRCLIRR 298
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 157 bits (398), Expect = 3e-42
Identities = 89/320 (27%), Positives = 144/320 (45%), Gaps = 32/320 (10%)
Query: 1330 ELPEKIERLVRCEASAYQKLL----MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385
LP KIE++V C + QK L +K+ + S +S+ L+ +CNHP L
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 67
Query: 1386 -------SQLHAEEVDTLIPKHYLPP--IVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTM 1435
+ + L P++Y +L GK+ +LD +L + T +V+ S
Sbjct: 68 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY 127
Query: 1436 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNL 1495
T+ LD+ E ++Y Y+RLDG S R ++++FN SP FIF+LS +AGG G+NL
Sbjct: 128 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 187
Query: 1496 QAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555
A+ +++FD DWNP D QA AR R GQK+ + R + T+EE++ HK ++
Sbjct: 188 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALS 247
Query: 1556 NQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDAL---NDLL--ARSESEID 1610
+ + + L L L++ L +D R +
Sbjct: 248 SCVVDEE---QDVERHFSLGELRELFS----------LNEKTLSDTHDRFRCRRCVNGRQ 294
Query: 1611 VFESVDKQRREEEMATWRKL 1630
V D +++ W
Sbjct: 295 VRPPPDDSDCTCDLSNWHHC 314
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 111 bits (277), Expect = 2e-27
Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 21/252 (8%)
Query: 1334 KIERLVRCEASAYQKLL----MKRVEENLGSIGNSKGR-SVHNSVMELRNICNHPYLSQL 1388
KIE V C + Q + ++ + N+ S+ K + + +++++L+ I +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA---- 56
Query: 1389 HAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448
VR GK+ ++ + ++ F+ + ++ + +
Sbjct: 57 ---------LLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK 107
Query: 1449 KQ-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507
+ L G S +R +I KF S FI L S++AGG G+NL +A+ VI FD
Sbjct: 108 ELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSANRVIHFDRW 166
Query: 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG-FFDN 1566
WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K + I++G +
Sbjct: 167 WNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWIT 226
Query: 1567 NTSAEDRREYLE 1578
S E+ R+ +E
Sbjct: 227 ELSTEELRKVIE 238
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.5 bits (213), Expect = 1e-18
Identities = 35/279 (12%), Positives = 89/279 (31%), Gaps = 33/279 (11%)
Query: 1299 LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIER--LVRCEASAYQKLLMKRVEE 1356
L E + L ++LR + + + I + ++R +++ +
Sbjct: 11 LPEIY-KEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDL 69
Query: 1357 NLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH--AEEVDTLIPK--------------- 1399
+ ++ +H+++ L + + EE K
Sbjct: 70 RGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAI 129
Query: 1400 HYLPPIVRLCG---KLEMLDRLLPKL--KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL 1454
L + K++ L ++ + + + +++ F+ + + L +
Sbjct: 130 SLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAK 189
Query: 1455 RLDGHTSGGDRGALIDKFNQQ-----DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWN 1509
R G S + L + + F L++ G G+++ D V+ ++ +
Sbjct: 190 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 249
Query: 1510 PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548
+Q R R G+ V+ T +E S+
Sbjct: 250 AIRSIQ---RRGRTGRHMPGRVIILMAKGTRDEAYYWSS 285
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.0 bits (165), Expect = 5e-13
Identities = 24/212 (11%), Positives = 72/212 (33%), Gaps = 16/212 (7%)
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH 1389
L + + + + +++ ++ E+ ++G ++ + S
Sbjct: 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR----AEDFNKIVMASGYD 57
Query: 1390 AEEVDTLIPKHYLPPIVRLC-GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448
+ L I K+ L +L + + +++ F+ L+ +
Sbjct: 58 ERAYEALRAWEEARRIAFNSKNKIRKLREILERHR--KDKIIIFTRHNELVYRIS----- 110
Query: 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW 1508
K + + TS +R +++ F + + G+++ A+ +I
Sbjct: 111 KVFLIPAITHRTSREEREEILEGFRTGRFRAIVS---SQVLDEGIDVPDANVGVIMSGSG 167
Query: 1509 NPQVDLQAQARAHRIGQ-KRDVLVLRFETVQT 1539
+ + +Q R R + K++ ++ + T
Sbjct: 168 SAREYIQRLGRILRPSKGKKEAVLYELISRGT 199
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.6 bits (164), Expect = 9e-13
Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 27/172 (15%)
Query: 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR 1140
P LR+YQ L + G + G GKT +A I L
Sbjct: 61 PTPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINELSTPT--- 113
Query: 1141 GPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEY 1200
+VV ++ W+ + + + + T
Sbjct: 114 --LIVVPTLALAEQWKERLGIFGEEYVGEFS----------------GRIKELKPLTVST 155
Query: 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTP 1252
+ + + ++ +I DE H + S + + RL LT T
Sbjct: 156 YDSAYVNAEKLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATF 205
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 49.1 bits (116), Expect = 3e-06
Identities = 23/218 (10%), Positives = 60/218 (27%), Gaps = 20/218 (9%)
Query: 1043 EKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWL 1102
+ + + + ++ + + +L I + YQ +
Sbjct: 73 DNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKR-------IEPHWYQKDAVFE- 124
Query: 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162
L N + L G+++ L Y +E + ++V +++ + +
Sbjct: 125 -GLVNRRRILNL--PTSAGRSLIQALLARYYLENYEGK-ILIIVPTTALTTQMADDFVDY 180
Query: 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDE 1222
H ++ + + N +PK Q+ ++ DE
Sbjct: 181 RLFSHAMIKKIGGGASKD-------DKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDE 233
Query: 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL 1260
H S + + L+G+ +
Sbjct: 234 CHLATGKSIS-SIISGLNNCMFKFGLSGSLRDGKANIM 270
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 45.5 bits (106), Expect = 2e-05
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 11/191 (5%)
Query: 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149
+ R YQ + N ++ GLGKT +IA++ G L++ P+
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKT--LIAMMIAEYRLTKYGGKVLMLAPT 61
Query: 1150 SVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK 1209
L +E + E+ + + V++ T + + N +
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSP-EERSKAWARAKVIVATPQTIENDLLAGR 120
Query: 1210 LSKIQWHYIIIDEGHRIKNASCK---LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNF 1266
+S I+ DE HR + ++ + LT +P + + + N
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNL 180
Query: 1267 LLPNIFNSSED 1277
+ +I SE+
Sbjct: 181 GIEHIEYRSEN 191
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 17/145 (11%)
Query: 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIV 1170
+L G GKT + + I + R +V + + K
Sbjct: 9 TTVLDFHPGAGKTRRFLPQILAECARRRLR----TLVLAPTRVVLSEMKEAFHGLDVKFH 64
Query: 1171 YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230
+ + + L + P + W II+DE H + AS
Sbjct: 65 TQAFSAHG---------SGREVIDAMCHATLTYRMLEP-TRVVNWEVIIMDEAHFLDPAS 114
Query: 1231 CK---LNADLKHYQSSHRLLLTGTP 1252
A S +L+T TP
Sbjct: 115 IAARGWAAHRARANESATILMTATP 139
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 2e-04
Identities = 37/254 (14%), Positives = 91/254 (35%), Gaps = 23/254 (9%)
Query: 776 ISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCF 835
+ L TE +E LH DS E+ +++ R + + + +++ Q
Sbjct: 60 VQLPTESLQELLDLHRDS---------EREAIEVFIRSSFKDVDHLFQKELAAQLEKKRD 110
Query: 836 NKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKH 895
+ K++ +S D + VI + + + F + + LK
Sbjct: 111 DFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQ----KLQDLKKKYYE 166
Query: 896 --RHGRRIKQLEKFEQKMKEERQKRIRERQKEFFS------EIEAHKERLDEVFKIKRER 947
R G + +++ + K KE I + + E K+ E
Sbjct: 167 EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEM 226
Query: 948 WRGVNKYVKEFHKRKERIHREKIDRIQREKINLLK--INDVEGYLRMVQDAKSDRVNKLL 1005
R + +++ + + ++ ++++ +++ LLK + L+ + + K
Sbjct: 227 QRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 286
Query: 1006 KETEKYLQKLGSKL 1019
+ + +Q L +K+
Sbjct: 287 RIMKNEIQDLQTKM 300
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 38.7 bits (89), Expect = 0.002
Identities = 20/145 (13%), Positives = 31/145 (21%), Gaps = 23/145 (15%)
Query: 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVY 1171
L G GK+ +V A +G ++V+ SV
Sbjct: 11 AHLHAPTGSGKSTKVPAAYA-------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNI 63
Query: 1172 CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS- 1230
+ II DE H S
Sbjct: 64 RTGVRTITTGSPITYSTYGK----------FLADGGCSGG--AYDIIICDECHSTDATSI 111
Query: 1231 ---CKLNADLKHYQSSHRLLLTGTP 1252
+ + + +L T TP
Sbjct: 112 LGIGTVLDQAETAGARLVVLATATP 136
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.4 bits (88), Expect = 0.003
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470
+ E L RLL K + L F R + L ++ + G S R +I
Sbjct: 16 RFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 72
Query: 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530
F Q+ I + G+++ + VI + NP+ + R R G+K +
Sbjct: 73 LFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 129
Query: 1531 VL 1532
+
Sbjct: 130 SI 131
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2693 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.81 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.77 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.76 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.74 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.74 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.73 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.73 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.7 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.7 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.66 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.66 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.66 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.6 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.54 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.5 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.46 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.39 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.35 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.3 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.23 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.17 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.15 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.15 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.15 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.13 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.13 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.09 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.08 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.06 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.01 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.98 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.97 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.94 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.9 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.81 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.77 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.54 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.08 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.76 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.8 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.21 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.15 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 95.13 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.58 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 93.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.17 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 90.86 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.52 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 87.57 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.78 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.67 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.41 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.88 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.86 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 81.23 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=3.5e-39 Score=388.31 Aligned_cols=237 Identities=34% Similarity=0.548 Sum_probs=203.5
Q ss_pred HHh-hcCccceeEeeeccccHHHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCccccchhhhhh-------
Q 000047 1326 KVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLSQLHAEEV------- 1393 (2693)
Q Consensus 1326 DVe-keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~~~~~EEi------- 1393 (2693)
+|. ++||+|++++++|+|++.|+.+|+.+......... .....+++.++.||++||||+|+.......
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~ 82 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA 82 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccccch
Confidence 444 68999999999999999999999998765432211 122357888999999999999865332211
Q ss_pred hccCCCCC--CChhhhcccHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHH
Q 000047 1394 DTLIPKHY--LPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1394 d~li~~~~--l~~Lvr~SgKLelLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId 1470 (2693)
....+..+ .......|+|+.+|.++|..+. ..|+||||||+|+.++++|+++|..+|+.|++|+|+++..+|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~ 162 (346)
T d1z3ix1 83 LDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVE 162 (346)
T ss_dssp GGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHH
T ss_pred hhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHH
Confidence 11111111 1233567999999999998875 67899999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
+||.++.+.+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||||++.+||||+|++++..
T Consensus 163 ~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~ 242 (346)
T d1z3ix1 163 RFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242 (346)
T ss_dssp HHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 99998887889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccC
Q 000047 1551 KLGVANQSITAG 1562 (2693)
Q Consensus 1551 Kl~Li~kVIqaG 1562 (2693)
|..+++.+++.+
T Consensus 243 K~~l~~~v~~~~ 254 (346)
T d1z3ix1 243 KKALSSCVVDEE 254 (346)
T ss_dssp HHHTSCCCCSCS
T ss_pred HHHHHHHHhCCc
Confidence 999999999765
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-38 Score=360.40 Aligned_cols=225 Identities=34% Similarity=0.677 Sum_probs=196.4
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.+|..+. .+|+|||++||.||..+...+.|||||||||||||+++|+++.++..... ..++|||||.+++.||.+|+.
T Consensus 4 ~~P~~~~-~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~-~~~~LIv~p~~l~~~W~~e~~ 81 (230)
T d1z63a1 4 LEPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSVLKNWEEELS 81 (230)
T ss_dssp CCCCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTTHHHHHHHHH
T ss_pred cCchhhh-cchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhccc-ccccceecchhhhhHHHHHHH
Confidence 4677776 58999999999999999999999999999999999999999988876544 457999999999999999999
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1161 FWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1161 KwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+|++...+..+...... ....+++|+|++|+.+.+. ..+...+|++||+||||++||..+..++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~--------~~~~~~~vvi~~~~~~~~~---~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l 150 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRD---TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL 150 (230)
T ss_dssp HHCTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTC---HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS
T ss_pred hhcccccceeeccccch--------hhccCcCEEEeeHHHHHhH---HHHhcccceEEEEEhhhcccccchhhhhhhhhh
Confidence 99998888877654322 2345789999999999763 357888999999999999999999999999999
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
.+.+||+|||||++|++.|||++++||+|..|++...|...|..++.... .....+|+.+|++|++
T Consensus 151 ~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~--------------~~~~~~L~~~l~~~~l 216 (230)
T d1z63a1 151 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFIL 216 (230)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEE
T ss_pred ccceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccC--------------HHHHHHHHHHhhccEE
Confidence 99999999999999999999999999999999999999999987765431 1235679999999999
Q ss_pred hhhHhH--HhhcCc
Q 000047 1321 RRLKHK--VENELP 1332 (2693)
Q Consensus 1321 RRtKkD--VekeLP 1332 (2693)
||+|.| |..+||
T Consensus 217 Rr~K~d~~v~~dLP 230 (230)
T d1z63a1 217 RRTKYDKAIINDLP 230 (230)
T ss_dssp CCCTTCHHHHTTSC
T ss_pred EEecCCccHhhcCC
Confidence 999998 577887
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=1.5e-38 Score=373.11 Aligned_cols=230 Identities=28% Similarity=0.479 Sum_probs=188.6
Q ss_pred CcchHHHHHHHHHHHHHh-----hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC----CCEEEEecCchHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKNDR----GPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy-----~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~----gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|||||++||+||+.++ .++.|||||||||||||+|+|+++.+++...... +++|||||.+++.||.+||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 589999999999998865 3567899999999999999999999998776543 4699999999999999999
Q ss_pred HHHCCC-CcEEEEcCChHHHH-HHHHhhh----hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchH
Q 000047 1160 NFWAPR-IHKIVYCGPPEERR-RLFKEKI----VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1160 eKwaPs-LkVIvy~Gs~~eRk-~l~ke~i----~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKl 1233 (2693)
.+|++. ..++.++|....+. ....... ....++|+|+||+.+.+. ...+..++|++|||||||++||..++.
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~--~~~l~~~~~~~vI~DEaH~ikn~~s~~ 211 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSDNQT 211 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTCHHH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccc--hhcccccceeeeecccccccccccchh
Confidence 999974 55666666544332 2222211 223568999999999874 457888999999999999999999999
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
++++..+++.+||+|||||++|++.|||++++||+|+.|++...|.++|..|+.......... .........+.+|+.
T Consensus 212 ~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~l~~L~~ 289 (298)
T d1z3ix2 212 YLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELIS 289 (298)
T ss_dssp HHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHHH
T ss_pred hhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876644332211 122233345778999
Q ss_pred Hhhhhhhhh
Q 000047 1314 VLRPFVLRR 1322 (2693)
Q Consensus 1314 VLrPFLLRR 1322 (2693)
+|+||+|||
T Consensus 290 ~l~~~~lRR 298 (298)
T d1z3ix2 290 IVNRCLIRR 298 (298)
T ss_dssp HHHHHEECC
T ss_pred HhhhheeCC
Confidence 999999997
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-35 Score=339.00 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=175.8
Q ss_pred ceeEeeeccccHHHHHHHHHHHHHhhc-cCCC----CCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhc
Q 000047 1334 KIERLVRCEASAYQKLLMKRVEENLGS-IGNS----KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL 1408 (2693)
Q Consensus 1334 KiE~vV~ceLSa~Qk~LYk~Lee~l~s-i~~s----k~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~ 1408 (2693)
|+|+.++|+|++.|+.+|+.+...+.. +... ....++..+++||++|+||+++.... ..+..
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~-------------~~~~~ 67 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-------------QSVRR 67 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-------------CCSTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhcCCccccccc-------------cchhh
Confidence 678999999999999999988765432 2211 12245788999999999999864321 23456
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
|+|+..|.++|.++...|+||||||+|+.++++|+.+|... |+.+.+|+|+++.++|++++++|+++. .+.+||+++.
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vll~~~~ 146 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVK 146 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECC
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccc-cchhcccccc
Confidence 89999999999999999999999999999999999999754 899999999999999999999998754 3678999999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
++|+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+||+|++++..|..+++.+++++
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 221 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999764
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=8.8e-21 Score=209.94 Aligned_cols=193 Identities=11% Similarity=0.138 Sum_probs=139.4
Q ss_pred hcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCc---chhHHHHHHHHhhCCccccchhh--hhhhccCCCCCCC
Q 000047 1329 NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGR---SVHNSVMELRNICNHPYLSQLHA--EEVDTLIPKHYLP 1403 (2693)
Q Consensus 1329 keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~r---slln~LmqLRKICnHPyL~~~~~--EEid~li~~~~l~ 1403 (2693)
+.||+.....+.++|++.++..|+.+............. ........++..+.++....... .+.. .
T Consensus 1 k~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (200)
T d2fwra1 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEAR--------R 72 (200)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHH--------H
T ss_pred CcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHH--------H
Confidence 368999999999999999999998765443221111100 00000000111111111100000 0000 0
Q ss_pred hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.....+.|++.|.++|.+. .++|+||||++..+++.|.+.|. +..++|.++.++|++++++|++++.. +|
T Consensus 73 i~~~~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~---vL 142 (200)
T d2fwra1 73 IAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AI 142 (200)
T ss_dssp HHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BC
T ss_pred HhhCcHHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCee---ee
Confidence 0123457999999999874 47899999999999999988774 33479999999999999999877655 57
Q ss_pred eeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc-cEEEEEEEeCCC
Q 000047 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQT 1539 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK-eV~VyRLIT~gS 1539 (2693)
++|+++++||||+.|++||+||++|||..++||+||+||+||.+ .|+||+||+.+|
T Consensus 143 v~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 143 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred eecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 89999999999999999999999999999999999999999975 599999999987
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=2.3e-19 Score=208.09 Aligned_cols=131 Identities=15% Similarity=0.249 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC--------CCHHHHHHHHHHHhCCCCC
Q 000047 1409 CGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH--------TSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1409 SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~rGikylRLDGS--------TS~eERqeiId~FN~~dSd 1478 (2693)
++|++.|.++|.++. ..++|+||||+++.+++++.++|...|+++..++|. ++..+|..+++.|+++..+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 469999999988763 457899999999999999999999999999999885 4455899999999987655
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
+||+|+++++||||+.|++||+||++|||..|+||+||++|. +++.||.|++.+|+||++|
T Consensus 222 ---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~---~~~~~~~l~~~~~~ee~~~ 282 (286)
T d1wp9a2 222 ---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH---MPGRVIILMAKGTRDEAYY 282 (286)
T ss_dssp ---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC---CCSEEEEEEETTSHHHHHH
T ss_pred ---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC---CCCEEEEEEeCCCHHHHHH
Confidence 799999999999999999999999999999999999998884 4678999999999999875
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.4e-18 Score=188.94 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=119.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.++|.+. .+.|+||||++..+++.|..+|...|+.+..++|.++..+|..+++.|+.+... +|++|+
T Consensus 16 ~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~Td 90 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSD 90 (171)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESS
T ss_pred HHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccchh
Confidence 346999999999864 468999999999999999999999999999999999999999999999988776 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
++++|||++.+++||+||+|||+..|+||+||++|.|+.. .+|.|++.+ |..++...+++
T Consensus 91 ~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~v~~~--e~~~~~~i~~~ 150 (171)
T d1s2ma2 91 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN--DRFNLYKIEQE 150 (171)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG--GHHHHHHHHHH
T ss_pred HhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCcc--EEEEEeCHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 456677765 55555555544
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.9e-18 Score=185.42 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=120.3
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
..+.|+.+|.++|..+ .+.|+||||++...++.|.++|...|+.+..+||+++.++|..+++.|+.++.. +||+|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 3467999999999876 367999999999999999999999999999999999999999999999988766 79999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..+ |.|++. .-|..++..++.++
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~ 147 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD-ENDAKILNDVQDRF 147 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE--EEEECc-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986544 556654 33556666655543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.74 E-value=1.7e-18 Score=192.90 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=110.5
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEI 1159 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEf 1159 (2693)
..|..-...+|||||.+++++++. +.+|||+++||+|||++++.++..+ .+++|||||. .++.||.++|
T Consensus 61 ~~~~~~~~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~ 130 (206)
T d2fz4a1 61 PTPYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERL 130 (206)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHH
Confidence 344444457899999999987753 6689999999999999998877654 3569999996 5678999999
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh
Q 000047 1160 NFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239 (2693)
Q Consensus 1160 eKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~ 1239 (2693)
.+|.+. .+..+.|.. .....++|+||+.+..... ....+|++|||||||++++. .+.+.+..
T Consensus 131 ~~~~~~-~~~~~~~~~------------~~~~~i~i~t~~~~~~~~~---~~~~~~~lvIiDEaH~~~a~--~~~~i~~~ 192 (206)
T d2fz4a1 131 GIFGEE-YVGEFSGRI------------KELKPLTVSTYDSAYVNAE---KLGNRFMLLIFDEVHHLPAE--SYVQIAQM 192 (206)
T ss_dssp GGGCGG-GEEEESSSC------------BCCCSEEEEEHHHHHHTHH---HHTTTCSEEEEECSSCCCTT--THHHHHHT
T ss_pred Hhhccc-chhhccccc------------ccccccccceehhhhhhhH---hhCCcCCEEEEECCeeCCcH--HHHHHHhc
Confidence 998754 455565532 1345799999999876322 22347999999999999754 35567777
Q ss_pred hcccccccccccC
Q 000047 1240 YQSSHRLLLTGTP 1252 (2693)
Q Consensus 1240 Lka~~RLLLTGTP 1252 (2693)
+.+.++|+||||+
T Consensus 193 ~~~~~~lgLTATl 205 (206)
T d2fz4a1 193 SIAPFRLGLTATF 205 (206)
T ss_dssp CCCSEEEEEEESC
T ss_pred cCCCcEEEEecCC
Confidence 8899999999997
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.2e-17 Score=180.78 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+++|.+++..+ ...|+||||++...++.|..+|...|+.+..++|.++..+|.++++.|+.++.. +|++|++
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Tdv 86 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 86 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeecccc
Confidence 45999999999865 467999999999999999999999999999999999999999999999988776 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++|||++.+++||+||+|||+..|+||+||++|.|++. .++.|++..
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g--~~i~~~~~~ 134 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNE 134 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETT
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCcc--EEEEEcCHH
Confidence 999999999999999999999999999999999999854 566667765
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=6.1e-18 Score=181.09 Aligned_cols=133 Identities=20% Similarity=0.267 Sum_probs=115.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+++|.++|.. .+.++||||++..+++.|..+|...|+....++|.++..+|..++++|+.+... +|++|++
T Consensus 14 ~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~~ 87 (155)
T d1hv8a2 14 NERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDV 87 (155)
T ss_dssp GGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTT
T ss_pred HHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehhH
Confidence 4699999998864 467899999999999999999999999999999999999999999999988766 7999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+++|||++.+++||+||+|||+..|+||+||++|.|++.. +|.|+... |+..+...+++
T Consensus 88 ~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~--d~~~~~~i~~~ 146 (155)
T d1hv8a2 88 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK--AISIINRR--EYKKLRYIERA 146 (155)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCE--EEEEECTT--SHHHHHHHHHH
T ss_pred HhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCce--EEEEEchH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 44556554 45555544433
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.6e-17 Score=177.99 Aligned_cols=133 Identities=18% Similarity=0.304 Sum_probs=117.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.++|..+ .+.++||||+....++.+..+|...|+.+..++|.++.++|..+++.|+++..+ +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccch
Confidence 35999999999765 467999999999999999999999999999999999999999999999988877 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
+++|||++.+++||+||+||++..|+||+||++|.|++. .+|.|++.. |..++...+.
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G--~~i~~~~~~--d~~~~~~i~~ 151 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND--DIRILRDIEQ 151 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG--GHHHHHHHHH
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCc--EEEEEECHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999754 556677765 4445544433
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.70 E-value=1.3e-17 Score=191.74 Aligned_cols=262 Identities=16% Similarity=0.170 Sum_probs=162.6
Q ss_pred hhcCCCeEEEcCCCCChHHHHH-HHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVI-ALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFK 1183 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAI-ALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~k 1183 (2693)
+.++.+.||...||+|||++++ +++...+.. ...+|||+|+..| .||.++|...........+.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~---~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~----------- 71 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR---GLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR----------- 71 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc---CCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEe-----------
Confidence 4567889999999999997665 333333332 2348999998555 77888876554322211111
Q ss_pred hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh---cccccccccccCCCCCHHHH
Q 000047 1184 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY---QSSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1184 e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L---ka~~RLLLTGTPLQNnLeEL 1260 (2693)
........++++|+..+...... .....++++|||||||++-.........+..+ .....+++|||+.....
T Consensus 72 -~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~--- 146 (305)
T d2bmfa2 72 -AEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRD--- 146 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC---
T ss_pred -ecccCccccccCCcHHHHHHHhc-CccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCccee---
Confidence 11224568999999988664332 22234689999999999865443333333322 23456889999831100
Q ss_pred HHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeee
Q 000047 1261 WALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVR 1340 (2693)
Q Consensus 1261 wSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ 1340 (2693)
.+.. ...|.. .....
T Consensus 147 ------------------------~~~~----------------------------------------~~~~~~-~~~~~ 161 (305)
T d2bmfa2 147 ------------------------PFPQ----------------------------------------SNAPIM-DEERE 161 (305)
T ss_dssp ------------------------SSCC----------------------------------------CSSCEE-EEECC
T ss_pred ------------------------eecc----------------------------------------cCCcce-EEEEe
Confidence 0000 000000 00000
Q ss_pred ccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHH
Q 000047 1341 CEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 1420 (2693)
Q Consensus 1341 ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~ 1420 (2693)
+. ...... .+.
T Consensus 162 ~~--------------------------------------------------------~~~~~~-------------~~~ 172 (305)
T d2bmfa2 162 IP--------------------------------------------------------ERSWNS-------------GHE 172 (305)
T ss_dssp CC--------------------------------------------------------CSCCSS-------------CCH
T ss_pred cc--------------------------------------------------------HHHHHH-------------HHH
Confidence 00 000000 011
Q ss_pred HhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCE
Q 000047 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 1500 (2693)
Q Consensus 1421 kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADt 1500 (2693)
.+...++++||||.....++.+..+|...|+++..++|.+....| ..|..+... +|++|++++.|+|+ .+++
T Consensus 173 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~---~lvaT~~~~~G~~~-~~~~ 244 (305)
T d2bmfa2 173 WVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWD---FVVTTDISEMGANF-KAER 244 (305)
T ss_dssp HHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCS---EEEECGGGGTTCCC-CCSE
T ss_pred HHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchh---hhhhhHHHHhcCCC-CccE
Confidence 123456799999999999999999999999999999998865443 456655544 79999999999999 5666
Q ss_pred EE----------EecCC----------CCccchhhhhhhhcccCCccc
Q 000047 1501 VI----------IFDTD----------WNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1501 VI----------iyDpp----------WNP~~diQAIGRAHRIGQkKe 1528 (2693)
|| +||.+ -++..|+|++||++|.|+...
T Consensus 245 Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 245 VIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred EEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 65 34443 356778999999999998764
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.66 E-value=4.3e-17 Score=190.32 Aligned_cols=162 Identities=13% Similarity=0.157 Sum_probs=115.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs-- 1165 (2693)
.+||+||.+++.+++. +.+|||+.+||+|||+++++++.++..... .++|||||. +|+.||.++|.+|...
T Consensus 112 ~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~~~--~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhccc--ceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 6899999999999876 568999999999999999888877765433 458999997 7789999999998643
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+....+.... ........+++|+|++.+.+.. +.. ..+|++||+||||++++. .+...+..+ .+.+
T Consensus 186 ~~~~~~~~g~~~------~~~~~~~~~i~i~t~qs~~~~~-~~~--~~~f~~VIvDEaH~~~a~--~~~~il~~~~~~~~ 254 (282)
T d1rifa_ 186 AMIKKIGGGASK------DDKYKNDAPVVVGTWQTVVKQP-KEW--FSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (282)
T ss_dssp GGEEECSTTCSS------TTCCCTTCSEEEECHHHHTTSC-GGG--GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCE
T ss_pred ccceeecceecc------cccccccceEEEEeeehhhhhc-ccc--cCCCCEEEEECCCCCCch--hHHHHHHhccCCCe
Confidence 233333222111 1112345689999999987632 222 246899999999998743 234455555 6789
Q ss_pred cccccccCCCCCHHHHHHHhhhcc
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLL 1268 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~ 1268 (2693)
||+|||||-..... .|.|..++.
T Consensus 255 rlGlTaT~~~~~~~-~~~l~g~~G 277 (282)
T d1rifa_ 255 KFGLSGSLRDGKAN-IMQYVGMFG 277 (282)
T ss_dssp EEEECSSCCTTSTT-HHHHHHHHC
T ss_pred EEEEEeecCCCCcc-eEEEeeecC
Confidence 99999999655543 355554443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.66 E-value=3.5e-16 Score=170.63 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=119.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
.++|+||.++++++. +.|+|++++||+|||++++.++.+++... .+++|||||. .++.||.++|.+|+. .
T Consensus 8 ~~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~~--~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HCCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHHS--CSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHhc--CCcEEEEcCchHHHHHHHHHHHHhhcccc
Confidence 368999999999874 35799999999999999887776665543 3569999997 666899999999974 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH---hhcc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK---HYQS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk---~Lka 1242 (2693)
.++..+.+......+. ......+++++|++.+........+...+|++||+||||++.+.......... ....
T Consensus 81 ~~v~~~~~~~~~~~~~----~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~ 156 (200)
T d1wp9a1 81 EKIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (200)
T ss_dssp GGEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred cceeeeecccchhHHH----HhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCC
Confidence 6677776654433211 11235689999999998755555566668999999999999876543332211 2233
Q ss_pred cccccccccCCCCCHHHHHHHhhhcc
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLL 1268 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~ 1268 (2693)
.+.|+||||| .+...++..++..+.
T Consensus 157 ~~~l~~SATp-~~~~~~~~~~~~~l~ 181 (200)
T d1wp9a1 157 PLVIGLTASP-GSTPEKIMEVINNLG 181 (200)
T ss_dssp CCEEEEESCS-CSSHHHHHHHHHHTT
T ss_pred CcEEEEEecC-CCcHHHHHHHHhcCC
Confidence 4568899999 345555555555443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.9e-15 Score=168.84 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|++.|.++|... .+.++||||+....++.|..+|...|+.+..++|+++.++|.++++.|+.+... +||+|+
T Consensus 14 ~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaTd 88 (200)
T d1oywa3 14 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATV 88 (200)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECT
T ss_pred CCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEecc
Confidence 345888888888754 467999999999999999999999999999999999999999999999988876 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
++|+|||++++++||+||+|||+..|+|++||++|.|+...+.+
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~ 132 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 132 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEE
Confidence 99999999999999999999999999999999999997654433
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.54 E-value=2.4e-14 Score=157.80 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
+.+-|...+.+....++++||||.....++.|..+|...|+++..+||.+++++|.+++++|+++..+ +||+|++++
T Consensus 16 qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~ 92 (181)
T d1t5la2 16 QIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLR 92 (181)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCS
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHH
Confidence 33333333444455688999999999999999999999999999999999999999999999999887 899999999
Q ss_pred cccCccccCEEEEecCC-----CCccchhhhhhhhcccCCc
Q 000047 1491 VGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDpp-----WNP~~diQAIGRAHRIGQk 1526 (2693)
+|||++.+++||+||+| +++..|+||+||++|.|..
T Consensus 93 rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp SSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred ccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 99999999999999999 4788899999999999864
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=4.1e-14 Score=155.13 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=96.2
Q ss_pred HHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcccc
Q 000047 1419 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498 (2693)
Q Consensus 1419 L~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA 1498 (2693)
+.+..+.|+++||||....+++.|..+|...|++...|||.++..+|.+++++|++++.+ +|++|+++++|||++++
T Consensus 24 i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~V 100 (174)
T d1c4oa2 24 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEV 100 (174)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTE
T ss_pred HHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCCC
Confidence 444456799999999999999999999999999999999999999999999999998877 89999999999999999
Q ss_pred CEEEEecCCC-----CccchhhhhhhhcccCCc
Q 000047 1499 DTVIIFDTDW-----NPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1499 DtVIiyDppW-----NP~~diQAIGRAHRIGQk 1526 (2693)
++||+||++. +...|+|++||++|-|..
T Consensus 101 ~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred cEEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 9999999875 446799999999998764
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=5.3e-14 Score=154.82 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCC-Cc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPR-IH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPs-Lk 1167 (2693)
.|+|||.+++..+.. +.++||+.+||+|||.+++..+.+.+.. .+.+|+|+|.. ++.+|.++|.+|++. ..
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~~---~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhhc---cCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 699999999988764 7899999999999999886555544332 34589999975 668899999988874 45
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh---c-
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---Q- 1241 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---k- 1241 (2693)
+..+.|....+ .......+|+++|+..+.............+++||+||+|++.+.. ......+..+ .
T Consensus 98 v~~~~~~~~~~------~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~ 171 (202)
T d2p6ra3 98 IGISTGDYESR------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (202)
T ss_dssp EEEECSSCBCC------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred ceeeccCcccc------cccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCC
Confidence 55666654322 2234578899999988865433333334467999999999997653 2222233333 2
Q ss_pred ccccccccccCCCCCHHHH
Q 000047 1242 SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeEL 1260 (2693)
..++|+||||- . ++.+|
T Consensus 172 ~~~~l~lSATl-~-n~~~~ 188 (202)
T d2p6ra3 172 ALRVIGLSATA-P-NVTEI 188 (202)
T ss_dssp TCEEEEEECCC-T-THHHH
T ss_pred CCcEEEEcCCC-C-cHHHH
Confidence 34578999993 2 35554
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=6.3e-13 Score=149.55 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI- 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL- 1166 (2693)
++++++|+.++..++. +.+.|+..+||+|||++++.++.++... .+.+|||+|+ .|+.||.++|++|+...
T Consensus 42 ~~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~~---~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 42 GEPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHHh---cCeEEEEeccHHHHHHHHHHHHHHHHHcC
Confidence 4678999999887765 8899999999999999877666655432 3458999997 56789999999986432
Q ss_pred -----cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1167 -----HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1167 -----kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
.+..+.+......+. ........++|+|+|++++.+..+ ...+|++|||||+|.|........+.+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~Ilv~Tp~~l~~~~~----~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g 189 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKE-NFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLG 189 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHH-HHHHSGGGCSEEEEEHHHHHHCST----TSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred CceEEEEeeeecccchhhhh-hhhccccccceeccChHHHHHhhh----hcCCCCEEEEEChhhhhhcccchhHHHHhcC
Confidence 233344433222111 111223568999999999977432 224689999999999865544333333321
Q ss_pred -c------------ccccccccccCCCCCHHHHH-HHhhh
Q 000047 1241 -Q------------SSHRLLLTGTPLQNNLEELW-ALLNF 1266 (2693)
Q Consensus 1241 -k------------a~~RLLLTGTPLQNnLeELw-SLLnF 1266 (2693)
. ....+++|||.-......|+ .+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred ChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 0 11247789997554444444 34443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=6.1e-13 Score=146.29 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=115.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|||||.+++..++. +.++|+...||+|||++++..+.. ..+..++|+|. .++.+|..+|..+.....
T Consensus 24 ~~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~ 93 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAA 93 (206)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhccccc
Confidence 4799999999987664 779999999999999887544432 24568999998 455779999998875443
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-------HHHHHHhh
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-------LNADLKHY 1240 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-------lsraLk~L 1240 (2693)
.............. .........+++++|+..+........+...++.++|+||||.+...... ....+..+
T Consensus 94 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~ 172 (206)
T d1oywa2 94 CLNSTQTREQQLEV-MTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (206)
T ss_dssp EECTTSCHHHHHHH-HHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC
T ss_pred ccccccccccchhH-HHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhC
Confidence 33333333333322 23345578899999999886543333455567899999999998764321 11222333
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
.....++||||+-....+|+...|.+-+|
T Consensus 173 ~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 173 PTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 45567899999732223567777766555
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.30 E-value=2.8e-12 Score=129.88 Aligned_cols=134 Identities=20% Similarity=0.185 Sum_probs=81.9
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHh
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKE 1184 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke 1184 (2693)
+++++.++||..+||+|||++++..+....... ...+||++|...+.+|..+. +....+-+......
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~-------- 69 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFS-------- 69 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCC--------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHHHHHH---hhhhhhhhcccccc--------
Confidence 466789999999999999999876655444333 23489999997775544332 22333332222110
Q ss_pred hhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH---HHHHhhcccccccccccC
Q 000047 1185 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN---ADLKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1185 ~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls---raLk~Lka~~RLLLTGTP 1252 (2693)
........+.++++..+.... .......+|++|||||||++........ ..+......+.|+|||||
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 70 AHGSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp CCCCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred cccccccchhhhhHHHHHHHH-hccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 111233456666666664432 2345566899999999999843322211 122234566789999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.23 E-value=1.1e-11 Score=127.88 Aligned_cols=125 Identities=21% Similarity=0.161 Sum_probs=83.8
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
.+..+||..+||+|||++++.++. . ....+||+||... ..||..+|.+|+.......+.+..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~---~---~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~----------- 69 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA---A---QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT----------- 69 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---T---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH---H---cCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccc-----------
Confidence 456789999999999987654432 1 2345999999855 578999999987655554444321
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-HHHHHHhhc---ccccccccccC
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-LNADLKHYQ---SSHRLLLTGTP 1252 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-lsraLk~Lk---a~~RLLLTGTP 1252 (2693)
......+++++++.+..... . ...+|++|||||||++...... +...+..++ ....|+|||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 70 ITTGSPITYSTYGKFLADGG-C--SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ECCCCSEEEEEHHHHHHTTG-G--GGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred cccccceEEEeeeeeccccc-h--hhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 12345688888888876432 2 2347899999999998654332 333333332 23458899999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.1e-11 Score=139.77 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=114.7
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|-+-|.++++-+..-+..+ .+.+|..+||+|||++++..+...+..+. -++++||+..| .||...|.+|++
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~---q~~~m~Pt~~La~Qh~~~~~~~f~~ 158 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQHYRRTVESFSK 158 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhccc---ceeEEeehHhhhHHHHHHHHHhhhh
Confidence 467888999999887765444 46799999999999999988887776653 37999998766 789999999997
Q ss_pred -CCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHH-Hhh
Q 000047 1165 -RIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL-KHY 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL-k~L 1240 (2693)
++.+.+++|.. .+|..++ ..+..+..+|+|.|+..+..... -.+..+|||||-|++.-... ..+ ..-
T Consensus 159 ~~~~v~~l~~~~~~~~r~~~~-~~~~~g~~~iiIGThsl~~~~~~-----f~~LglviiDEqH~fgv~Qr---~~l~~~~ 229 (264)
T d1gm5a3 159 FNIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQEDVH-----FKNLGLVIIDEQHRFGVKQR---EALMNKG 229 (264)
T ss_dssp SSCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHCCC-----CSCCCEEEEESCCCC--------CCCCSSS
T ss_pred ccccceeeccccchHHHHHHH-HHHHCCCCCEEEeehHHhcCCCC-----ccccceeeeccccccchhhH---HHHHHhC
Confidence 45777777754 4455554 35667899999999999976322 12458999999999843221 111 111
Q ss_pred cccccccccccCCCCCH
Q 000047 1241 QSSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnL 1257 (2693)
...+.|++||||+..++
T Consensus 230 ~~~~~l~~SATPiprtl 246 (264)
T d1gm5a3 230 KMVDTLVMSATPIPRSM 246 (264)
T ss_dssp SCCCEEEEESSCCCHHH
T ss_pred cCCCEEEEECCCCHHHH
Confidence 33567999999987664
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.8e-11 Score=131.50 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=112.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..+.|.|..++..+++ +.+.|+...+|+|||+.++..+.+.+.........||+||+..+ .|-.+++.++. .
T Consensus 24 ~~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 99 (206)
T d1veca_ 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhccc
Confidence 3678899999998885 88999999999999998887766555444444458999999776 44455555553 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka 1242 (2693)
.+....+.|........ .......+|+|+|++++........+...+..++||||||+|.+.. ..+...+..+..
T Consensus 100 ~~~~~~~~g~~~~~~~~---~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~ 176 (206)
T d1veca_ 100 GAKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176 (206)
T ss_dssp SCCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT
T ss_pred CcccccccCCccHHHHH---HHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCC
Confidence 56666666665443322 2234678999999999987666566666778899999999997643 334455555543
Q ss_pred -cccccccccC
Q 000047 1243 -SHRLLLTGTP 1252 (2693)
Q Consensus 1243 -~~RLLLTGTP 1252 (2693)
...+++|||-
T Consensus 177 ~~Q~~l~SAT~ 187 (206)
T d1veca_ 177 NRQILLYSATF 187 (206)
T ss_dssp TCEEEEEESCC
T ss_pred CCEEEEEEecC
Confidence 4467889995
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.15 E-value=8.5e-11 Score=130.62 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa--PsL 1166 (2693)
.+.|.|.+++..++. .+.+.|+...+|+|||+.++..+......... ...||+||+..+ .++...+..+. ...
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~-~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENNG-IEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSS-CCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccccccC-cceEEEeeccccchhhhhhhhhhcccCCe
Confidence 577899999987765 22477888999999999887776655433322 247999998655 66777777764 356
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka-~ 1243 (2693)
++..+.|......+.. .+ .+.+|+|+|++.+.+......+...+..++||||||+|.+.. ..+.+.+..+.. .
T Consensus 102 ~v~~~~g~~~~~~~~~--~l--~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~ 177 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIK--AL--KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 177 (208)
T ss_dssp CEEEECTTSCHHHHHH--HH--HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred EEEEeeCCCChHHHHH--hc--CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCC
Confidence 7788888765443321 11 357999999999876555555556677899999999986543 334455555543 4
Q ss_pred ccccccccC
Q 000047 1244 HRLLLTGTP 1252 (2693)
Q Consensus 1244 ~RLLLTGTP 1252 (2693)
..+++|||-
T Consensus 178 Q~i~~SAT~ 186 (208)
T d1hv8a1 178 RILLFSATM 186 (208)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEccC
Confidence 457889994
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=8.6e-11 Score=130.72 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=114.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..+.|.|.+++..++. +.+.|+...+|+|||+.++..+...+.........||+||+..+ .|..+.+..+. +
T Consensus 22 ~~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~ 97 (207)
T d1t6na_ 22 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 97 (207)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCC
Confidence 3678899999998886 88999999999999998877666554443333458999998665 55666666665 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-c--chHHHHHHhhc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-S--CKLNADLKHYQ 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-s--SKlsraLk~Lk 1241 (2693)
.++..++.|........ ........+|+|+|++++........+...+..++|+||||+|... . ..+...++.+.
T Consensus 98 ~~~~~~~~g~~~~~~~~--~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~ 175 (207)
T d1t6na_ 98 NVKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 175 (207)
T ss_dssp TCCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC
T ss_pred CceeEEEeccccHHHHH--HHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCC
Confidence 45667777765443322 1223457899999999998766555566667789999999998753 1 12233334443
Q ss_pred cc-ccccccccCCCCCHHHHHH
Q 000047 1242 SS-HRLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1242 a~-~RLLLTGTPLQNnLeELwS 1262 (2693)
.. ..+++|||- ...+.++..
T Consensus 176 ~~~Q~il~SAT~-~~~v~~l~~ 196 (207)
T d1t6na_ 176 HEKQVMMFSATL-SKEIRPVCR 196 (207)
T ss_dssp SSSEEEEEESCC-CTTTHHHHH
T ss_pred CCCEEEEEeeeC-CHHHHHHHH
Confidence 33 347779994 555555443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=3.3e-12 Score=145.42 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee---
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--- 1486 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST--- 1486 (2693)
.|+..|..+|.++ |.++||||++..+++.|.++|... +||+++..+|.+++++|..++.+ +||+|
T Consensus 12 ~~~~~l~~~l~~~---~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a~ 79 (248)
T d1gkub2 12 ESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAHY 79 (248)
T ss_dssp CCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC-
T ss_pred hHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEeccc
Confidence 4677788888754 678999999999999999999853 79999999999999999988776 78888
Q ss_pred -cccccccCccc-cCEEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1487 -RAGGVGVNLQA-ADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1487 -rAGGeGLNLQa-ADtVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
+++++|||++. +++||+||+|| +.|++||++|.|+.
T Consensus 80 ~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~ 117 (248)
T d1gkub2 80 YGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQ 117 (248)
T ss_dssp -----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHH
T ss_pred cchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcc
Confidence 77899999986 99999999998 66889999999864
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.13 E-value=1.7e-11 Score=129.63 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEe
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiy 1504 (2693)
.+.++||||+....++.|.++|...|+....+||+++.++ |+++.. .+|++|+++++||| .+++.||+|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~~---~vlvaTd~~~~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNGD---VVVVATDALMTGFT-GDFDSVIDC 102 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSSC---EEEEESSSSCSSSC-CCBSEEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhhc---ceeehhHHHHhccc-cccceEEEE
Confidence 4679999999999999999999999999999999998543 555544 38999999999999 899999986
Q ss_pred c----CCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1505 D----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1505 D----ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
| +|+++..|+||+||++| |++- +|.|++.+
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred EecCCCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 5 68899999999999999 8654 46677654
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.8e-10 Score=129.90 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=111.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwa--Ps 1165 (2693)
..+.+.|..++.+++. +.+.|+...+|+|||+.++..+...+.........||+||+..+. |-.+++.+++ ..
T Consensus 38 ~~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 113 (222)
T d2j0sa1 38 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 113 (222)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccc
Confidence 3678899999999885 889999999999999988877665544333333479999997774 4566677765 35
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka- 1242 (2693)
+++..+.|.......... ...+.+|+|+|++++........+...+..++||||||+|.+... .+...+..+..
T Consensus 114 i~~~~~~g~~~~~~~~~~---l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~ 190 (222)
T d2j0sa1 114 VQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 190 (222)
T ss_dssp CCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTT
T ss_pred eeEEEEeecccchhhHHH---hccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCC
Confidence 677777776554432221 124679999999999876555556666778999999999987543 34444445433
Q ss_pred cccccccccC
Q 000047 1243 SHRLLLTGTP 1252 (2693)
Q Consensus 1243 ~~RLLLTGTP 1252 (2693)
...+++|||-
T Consensus 191 ~Q~ilfSAT~ 200 (222)
T d2j0sa1 191 TQVVLISATL 200 (222)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEEEeC
Confidence 4457889994
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=6.1e-10 Score=126.77 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=114.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..|-+-|..++.-+........ +-+|..+||+|||.+++..+...+..+ +-++|++|+..| .|+.+.|.++++.
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g---~qv~~l~Pt~~La~Q~~~~~~~~~~~ 130 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTTLLAQQHYDNFRDRFAN 130 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC---CceEEEccHHHhHHHHHHHHHHHHhh
Confidence 4677889999998887766554 569999999999999998887776543 348999998666 7799999999875
Q ss_pred --CcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH-hh
Q 000047 1166 --IHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HY 1240 (2693)
Q Consensus 1166 --LkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~L 1240 (2693)
..+.++++... .+..++ ..+..+..+|||-|+..+... +.-.++.+|||||-|++.- +....++ ..
T Consensus 131 ~~~~v~~l~~~~~~~~~~~~~-~~~~~g~~~iviGths~l~~~-----~~f~~LgLiIiDEeH~fg~---kQ~~~l~~~~ 201 (233)
T d2eyqa3 131 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFGV---RHKERIKAMR 201 (233)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSCH---HHHHHHHHHH
T ss_pred CCCEEEeccCcccchhHHHHH-HHHhCCCCCEEEeehhhhccC-----Cccccccceeeechhhhhh---HHHHHHHhhC
Confidence 46667777443 444443 456778999999999998652 2334578999999999632 2223333 23
Q ss_pred cccccccccccCCCCC
Q 000047 1241 QSSHRLLLTGTPLQNN 1256 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNn 1256 (2693)
...+.|++||||+.-+
T Consensus 202 ~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 202 ANVDILTLTATPIPRT 217 (233)
T ss_dssp TTSEEEEEESSCCCHH
T ss_pred CCCCEEEEecchhHHH
Confidence 4457899999997543
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.06 E-value=5.3e-10 Score=126.92 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=117.0
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---------CCCCEEEEecCchH-HHHH
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---------DRGPFLVVVPSSVL-PGWE 1156 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---------~~gP~LIVVPtSLL-~QW~ 1156 (2693)
....+.|.|..++..++. +.+.|+...+|+|||+..+..+...+.... ..-.+||+||+..+ .|+.
T Consensus 40 g~~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 40 SYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchh
Confidence 345889999999998885 889999999999999998877665443221 11237999998655 6788
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--ch
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CK 1232 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SK 1232 (2693)
.++..+.. .+++..+.|......+. .......+|||+|++.|........+...++.++||||||+|-... ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~ 192 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 192 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred eeeeecccCCCcEEEEEeccchhhHHH---hhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHH
Confidence 88877754 46777777765433222 1234578999999999987665556666788999999999986543 34
Q ss_pred HHHHHHhhc-----ccccccccccCCCCCHHHHH
Q 000047 1233 LNADLKHYQ-----SSHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1233 lsraLk~Lk-----a~~RLLLTGTPLQNnLeELw 1261 (2693)
+.+.++.+. ....+++||| +..++.+|.
T Consensus 193 i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l~ 225 (238)
T d1wrba1 193 IRKIIEESNMPSGINRQTLMFSAT-FPKEIQKLA 225 (238)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCEEEEEeee-CCHHHHHHH
Confidence 555565542 1234889999 444444443
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.1e-10 Score=128.77 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=109.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--sL 1166 (2693)
.+.+.|..++..++. +.+.|++..+|+|||+.++..+...+.........||+||+..+ .|-.+++.+++. .+
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 578899999998886 88999999999999999887776665444334448999999666 556677777653 34
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~ 1243 (2693)
.+..+.+....... .........+|+|+|++++........+...+..++||||||+|.+. .......+..+.. .
T Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 110 SCHACIGGTNVRAE--VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp CEEEECC--CCCST--TTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEeeecccchhHH--HHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 45555443322111 11223356899999999998776555666677899999999999765 3344455556654 3
Q ss_pred ccccccccC
Q 000047 1244 HRLLLTGTP 1252 (2693)
Q Consensus 1244 ~RLLLTGTP 1252 (2693)
.++++|||=
T Consensus 188 Q~il~SAT~ 196 (218)
T d2g9na1 188 QVVLLSATM 196 (218)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEecC
Confidence 457778886
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.98 E-value=4.3e-10 Score=125.03 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------------------CCeEEEEeCCCCHHHHH
Q 000047 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1417 eLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------GikylRLDGSTS~eERq 1466 (2693)
+++.++...++.+||||..+..++.+...|... ...+..+||+++.++|.
T Consensus 31 ~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~ 110 (201)
T d2p6ra4 31 ELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 110 (201)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHH
Confidence 444555566899999999987666555444320 01256689999999999
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-------ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-------yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.+.+.|+++... +|++|.+++.|||++..++||. ++.++++..|.|++|||+|.|....-.+|.++...
T Consensus 111 ~ie~~f~~g~i~---vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 111 VVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHhCCCce---EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCC
Confidence 999999988766 7999999999999986666665 56668899999999999999987776777555554
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=1.3e-09 Score=120.54 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=112.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHH--HHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEIN--FWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfe--KwaPs 1165 (2693)
..+.|.|..++..++. +.+.|+..++|+|||+.++..+.+.+.........++++|...+.. -...+. ....+
T Consensus 22 ~~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (206)
T d1s2ma1 22 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 97 (206)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccC
Confidence 4678899999998876 7889999999999998886665555444444445788888866533 222222 22357
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka- 1242 (2693)
+++....|........ .......+|+|+|++++........+...+..++||||||+|.+. ...+...++.++.
T Consensus 98 ~~~~~~~g~~~~~~~~---~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~ 174 (206)
T d1s2ma1 98 ISCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 174 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSS
T ss_pred eeEEeecCccchhhHH---HHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCC
Confidence 7888888876544322 223467999999999998877666666667889999999999774 2334344444543
Q ss_pred cccccccccCCCCCHHH
Q 000047 1243 SHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeE 1259 (2693)
...+++|||- ..++.+
T Consensus 175 ~Q~il~SATl-~~~v~~ 190 (206)
T d1s2ma1 175 HQSLLFSATF-PLTVKE 190 (206)
T ss_dssp CEEEEEESCC-CHHHHH
T ss_pred CEEEEEEEeC-CHHHHH
Confidence 4467889994 333443
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.94 E-value=5.6e-10 Score=122.84 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwaP 1164 (2693)
..+.+.|.+++..++. +.+.|+..+||+|||+.++..+...+.........++++|...+. +|.....++..
T Consensus 22 ~~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (209)
T d1q0ua_ 22 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97 (209)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhcccc
Confidence 3688899999998886 889999999999999987766665554444445578888865543 34444444432
Q ss_pred ---CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHh
Q 000047 1165 ---RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKH 1239 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~ 1239 (2693)
...+....+....... ......+.+|+|+|++.+........+...+.+++||||||++.+.. ..+...+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~ 174 (209)
T d1q0ua_ 98 KDRMIVARCLIGGTDKQKA---LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 174 (209)
T ss_dssp GGGCCCEEEECCCSHHHHT---TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccccccchhhHHH---HHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHH
Confidence 2344444554433221 12234678999999999987655555556678899999999997754 234444455
Q ss_pred hcc-cccccccccCCCCCHHHHH
Q 000047 1240 YQS-SHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1240 Lka-~~RLLLTGTPLQNnLeELw 1261 (2693)
++. ...+++|||- .+.+.++.
T Consensus 175 ~~~~~Q~il~SATl-~~~v~~l~ 196 (209)
T d1q0ua_ 175 MPKDLQMLVFSATI-PEKLKPFL 196 (209)
T ss_dssp SCTTCEEEEEESCC-CGGGHHHH
T ss_pred CCCCCEEEEEEccC-CHHHHHHH
Confidence 533 4457889994 44454443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=3.4e-09 Score=118.36 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=108.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--s 1165 (2693)
..+.+.|..++..++. +.+.|+...+|+|||+.++..+...+......-.+||+||+..+ .|-...+..... .
T Consensus 31 ~~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 106 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 106 (212)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhcccccccc
Confidence 4788899999988775 88999999999999998876665554433333347999998766 444445544432 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka- 1242 (2693)
+.+....+......+. ....+.+|+|+|++.+........+...+.+++||||||+|.+. ...+.+.+..+..
T Consensus 107 ~~~~~~~~~~~~~~~~----~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~ 182 (212)
T d1qdea_ 107 IKVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 182 (212)
T ss_dssp CCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred cceeeEeeccchhHHH----HHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCC
Confidence 4555555544333221 12346799999999998876666666677899999999999764 3344455555543
Q ss_pred cccccccccCCCCCHHHH
Q 000047 1243 SHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeEL 1260 (2693)
...+++|||- .+.+.+|
T Consensus 183 ~Q~vl~SAT~-~~~v~~l 199 (212)
T d1qdea_ 183 TQVVLLSATM-PNDVLEV 199 (212)
T ss_dssp CEEEEEESSC-CHHHHHH
T ss_pred CeEEEEEeeC-CHHHHHH
Confidence 3457889985 3344443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.81 E-value=1.2e-09 Score=127.17 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=91.0
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH----------HHHHHHHhCCCCCceEEEeeeccccc---c
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----------GALIDKFNQQDSPFFIFLLSIRAGGV---G 1492 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER----------qeiId~FN~~dSd~fVfLLSTrAGGe---G 1492 (2693)
+.|+||||+.+..++.|...|..+|++...+||+++.+.| .+++..|..++.+ +||.|++..+ |
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~d---vVVaT~~~a~g~~g 112 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD---SVIDCNTCVTQTVD 112 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBS---EEEECCEEEEEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCc---EEEEEeehhccCCC
Confidence 7899999999999999999999999999999999998876 4578888776655 6777777666 7
Q ss_pred cCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1493 LNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
+|+....+||+||.+.|...|+||+||++| |..- +|+|+...+-++.++
T Consensus 113 iDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t~p~~~l 161 (299)
T d1a1va2 113 FSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGERPSGMF 161 (299)
T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCCBCSCBC
T ss_pred CCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecCCCHHHHH
Confidence 778888899999999999999999999999 7432 455666655444333
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=7.4e-10 Score=124.03 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHH--------HHHHH-hh--cCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDV--------MEDYL-TF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDI--------Led~L-~~--rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.|...+.+.+.+....|++|.|.|...+..+. ..+.| +. .++++..+||.|+.++|++++.+|.+++.+
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 36666777777767788898888876643332 22333 22 367888899999999999999999998888
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+||||.+.+.|||+++|++||++|.+ |....+.|..||++|-|.+--|+
T Consensus 93 ---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~ 142 (206)
T d1gm5a4 93 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 142 (206)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred ---EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeE
Confidence 89999999999999999999999998 58999999999999999876553
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.2e-07 Score=106.14 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred HHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1415 LdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
+.+.|.+-...|++|.+.|.....++.+.+.|.. .++++..+||.|+.+++++++.+|.+++.+ +||||.+...|
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~TtvIEvG 96 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETG 96 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGG
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEehhhhhc
Confidence 4444444456799999999998888888777754 578999999999999999999999999887 89999999999
Q ss_pred cCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEEEEEEE
Q 000047 1493 VNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFE 1535 (2693)
Q Consensus 1493 LNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~VyRLI 1535 (2693)
||+++|+++|+++.+ |-..++.|-.||++|-+.. -++|-+.
T Consensus 97 iDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~--s~c~l~~ 138 (211)
T d2eyqa5 97 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLT 138 (211)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEE
T ss_pred cCCCCCcEEEEecchhccccccccccceeeecCcc--ceEEEEe
Confidence 999999999999998 6899999999999997654 3444333
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.08 E-value=3.1e-06 Score=99.06 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.+.++|||+.....++.|...|...|++++.|||.+..+++++ |.+++.+ |||+|++++.|||+ .+++||-
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~~---~~~~t~~~~~~~~~-~~~~vid~ 106 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPD---FILATDIAEMGANL-CVERVLDC 106 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCS---EEEESSSTTCCTTC-CCSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCcC---EEEEechhhhceec-CceEEEec
Confidence 4679999999999999999999999999999999998777653 5555555 89999999999999 6999984
Q ss_pred --------ecCC----------CCccchhhhhhhhcccCCc
Q 000047 1504 --------FDTD----------WNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1504 --------yDpp----------WNP~~diQAIGRAHRIGQk 1526 (2693)
||+. .+.....||.||++|.+..
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 107 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4332 3344457999999998544
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=3.3e-05 Score=84.03 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+.+.++...|..||||+......+.|..+|...|+++..|+.... ++-.+++. . ++.. ..+.|+|..
T Consensus 17 ~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~-Ag~~--g~VtIATNm 91 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-E-AGQK--GAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-T-TTST--TCEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-h-ccCC--CceeehhhH
Confidence 35899999999999999999999999999999999999999999999987653 33333443 2 3333 248999999
Q ss_pred cccccCccc--------cCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQA--------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQa--------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|.|+.- -=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 999988642 33789999999999999999999999987554433
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.0029 Score=70.08 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=105.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+..+...|..|||.+..+..-++|..+|...|+++..|+.... ++-.++|.+ ++... .+-|+|.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAq--AG~~G--aVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAV--AGRRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHT--TTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHh--cccCC--cEEeecc
Confidence 356999999999999999999999999999999999999999999999988643 333345554 34333 4899999
Q ss_pred ccccccCccc----------------------------------------------------cCEEEEecCCCCccchhh
Q 000047 1488 AGGVGVNLQA----------------------------------------------------ADTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1488 AGGeGLNLQa----------------------------------------------------ADtVIiyDppWNP~~diQ 1515 (2693)
.+|+|.|+.= -=+||.....-+-..+.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999732 237899999999999999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
-.||++|-|..-..++| -|+|..++.+
T Consensus 171 LRGRsGRQGDPGsSrFf-----lSLeDdLmr~ 197 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFY-----LSLGDELMRR 197 (219)
T ss_dssp HHHTSSGGGCCEEEEEE-----EETTSHHHHH
T ss_pred ccccccccCCCccceeE-----EeccHHHHHH
Confidence 99999999987666655 2566666554
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.21 E-value=0.016 Score=66.33 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwaP 1164 (2693)
...++-|+-|.-.|. .|.|.-..||=|||+++... +++... . .+.+-||..+.-|. .|...|-+|+
T Consensus 79 ~RhyDVQLiGgi~L~------~G~iaem~TGEGKTL~a~l~-a~l~al-~-g~~vhvvTvNdyLA~RDae~m~~iy~~l- 148 (273)
T d1tf5a3 79 MFPFKVQLMGGVALH------DGNIAEMKTGEGKTLTSTLP-VYLNAL-T-GKGVHVVTVNEYLASRDAEQMGKIFEFL- 148 (273)
T ss_dssp CCCCHHHHHHHHHHH------TTSEEECCTTSCHHHHHHHH-HHHHHT-T-SSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred eEEehhHHHHHHHHH------hhhheeecCCCcchhHHHHH-HHHHHh-c-CCCceEEecCccccchhhhHHhHHHHHc-
Confidence 456777888775553 35688899999999988544 444322 2 23467777777764 4999999998
Q ss_pred CCcEEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHH-----HHHhcc--CCCcccccCccEEEEccccccccc------
Q 000047 1165 RIHKIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYE-----YLMNKH--DRPKLSKIQWHYIIIDEGHRIKNA------ 1229 (2693)
Q Consensus 1165 sLkVIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE-----~Lik~~--Dr~~L~kikWd~VIIDEAHRIKN~------ 1229 (2693)
++.+-+.... ...|+..+ ..||+-.|-. +|+... ....+....+.+.||||++-+.=.
T Consensus 149 Glsvg~~~~~~~~~~r~~~Y-------~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpl 221 (273)
T d1tf5a3 149 GLTVGLNLNSMSKDEKREAY-------AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 221 (273)
T ss_dssp TCCEEECCTTSCHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred CCCccccccccCHHHHHHHh-------hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCce
Confidence 4555444332 23443332 4578877754 444432 233455667899999999986210
Q ss_pred ---------cchHHHHHHhhcccccccccccCCCCCHHHHHHHhh
Q 000047 1230 ---------SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1230 ---------sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
.+-.++.+.++. .+.-+||||- .....|||.+.+
T Consensus 222 iisg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 222 IISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred EeccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 111233332221 3456789996 445777777655
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.02 Score=67.80 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH-HHHHHHHH---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG-WESEINFW---A 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q-W~eEfeKw---a 1163 (2693)
..+-+.|+.++.-++. +.-.||....|+|||.++..++..+..... ....+++++|+..-.. -.+.+.+. .
T Consensus 147 ~~~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 147 SDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred cccccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 3466789999986663 556789999999999998887777765433 3346899999866533 22222111 1
Q ss_pred CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1164 PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
+......+.... .........-.......+.. .......+++||||||-.+- .......+..+...
T Consensus 223 ~~~~~~~~~~~~--------~~~t~~~ll~~~~~~~~~~~----~~~~~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~ 288 (359)
T d1w36d1 223 PLTDEQKKRIPE--------DASTLHRLLGAQPGSQRLRH----HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDH 288 (359)
T ss_dssp SCCSCCCCSCSC--------CCBTTTSCC---------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTT
T ss_pred Cchhhhhhhhhh--------hhhHHHHHHhhhhcchHHHH----hhhcccccceeeehhhhccC--HHHHHHHHHHhcCC
Confidence 000000000000 00000000000001111111 12334578999999998762 22345556667777
Q ss_pred ccccccccCCC
Q 000047 1244 HRLLLTGTPLQ 1254 (2693)
Q Consensus 1244 ~RLLLTGTPLQ 1254 (2693)
.+|+|.|=|-|
T Consensus 289 ~~lILvGD~~Q 299 (359)
T d1w36d1 289 ARVIFLGDRDQ 299 (359)
T ss_dssp CEEEEEECTTS
T ss_pred CEEEEECChhh
Confidence 88999998854
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.026 Score=61.57 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+||||...++.+...+.++. + -||..+.|+|||..+..++.+++..
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~ 51 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccc
Confidence 478999999999988877654 2 5789999999999999999887643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.11 Score=57.06 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEE
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy 1171 (2693)
|.+.+.+|...+.++. + .||..+.|+|||..+.+++..+....... ..|..+..++..-..... ..++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~-----~~~~~~~~~~~~i~~~~~--~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----ATPCGVCDNCREIEQGRF--VDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC-----SSCCSCSHHHHHHHHTCC--TTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccc-----cCccccchHHHHHHcCCC--CeEEEe
Confidence 5667777776665542 3 57899999999999988877765433222 122233333322211111 222322
Q ss_pred cCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc-cccchHHHHHHhhcccccccccc
Q 000047 1172 CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK-NASCKLNADLKHYQSSHRLLLTG 1250 (2693)
Q Consensus 1172 ~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK-N~sSKlsraLk~Lka~~RLLLTG 1250 (2693)
...........+ .+..... ......++.+|||||+|+|. +....+.+.+..+....+++|+.
T Consensus 90 ~~~~~~~i~~ir----------------~~~~~~~-~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 90 DAASRTKVEDTR----------------DLLDNVQ-YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp ETTCSSSHHHHH----------------HHHHSCC-CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred cchhcCCHHHHH----------------HHHHHHH-hccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 221110000000 0111111 11122357899999999983 22333445555555566777776
Q ss_pred cCCCCCHHHHHH
Q 000047 1251 TPLQNNLEELWA 1262 (2693)
Q Consensus 1251 TPLQNnLeELwS 1262 (2693)
+-...-+.-|.+
T Consensus 153 n~~~~i~~~i~S 164 (239)
T d1njfa_ 153 TDPQKLPVTILS 164 (239)
T ss_dssp SCGGGSCHHHHT
T ss_pred CCccccChhHhh
Confidence 654444444443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=93.44 E-value=0.15 Score=61.39 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEE
Q 000047 1094 YQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy 1171 (2693)
-|-++|+-++...+++. ..+|..-+|+|||+.+.+++..+ .+|+|||||.... .+|.++|..|++.-.+..|
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 38788887777766664 45677789999998876666543 5789999998776 6799999999988777665
Q ss_pred c
Q 000047 1172 C 1172 (2693)
Q Consensus 1172 ~ 1172 (2693)
.
T Consensus 89 ~ 89 (413)
T d1t5la1 89 V 89 (413)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.05 Score=59.34 Aligned_cols=49 Identities=14% Similarity=0.357 Sum_probs=29.9
Q ss_pred cCccEEEEccccccccccc-hHHHHHHhhcccccccccccCCCCCHHHHH
Q 000047 1213 IQWHYIIIDEGHRIKNASC-KLNADLKHYQSSHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1213 ikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~~RLLLTGTPLQNnLeELw 1261 (2693)
..+.++||||+|++.+... .+.+.+..+....+++|+.+-+..-+.-|.
T Consensus 130 ~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~ 179 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 179 (252)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHH
T ss_pred CCceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhh
Confidence 3578999999999954432 233444445555667777766554444433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=1.5 Score=49.62 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHH----HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLL----DVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tL----DILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.|||.......+......|.+|++.+...-.+ ..+..+|...|+.+..++|+++..+|.++....++++.+ +|
T Consensus 114 GSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---ii 190 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 190 (264)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred cccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC---EE
Confidence 58899988888888888899999999877554 456666667789999999999999999999999888766 56
Q ss_pred eeecccc-cccCccccCEEEE
Q 000047 1484 LSIRAGG-VGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrAGG-eGLNLQaADtVIi 1503 (2693)
|.|+++= ..+.+.+...||+
T Consensus 191 IGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 191 IGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp EECTTHHHHCCCCSCCCEEEE
T ss_pred EeehHHhcCCCCccccceeee
Confidence 6666653 3565555555554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.52 E-value=0.26 Score=53.43 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
|++-++.++.. .....-|+..+.|+|||-.++.+..++........=+++|.|.
T Consensus 2 ~~~~l~~~i~~-~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEK-SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHT-CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence 55656555541 1334568999999999999998887653322222226677664
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=87.57 E-value=1.1 Score=53.50 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhcCCC-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEE
Q 000047 1094 YQMSGLRWLVSLYNNQLN-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~ln-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy 1171 (2693)
-|-++|+-++....++.+ ..|..-+|++||+.+.+++..+ .+|+|||||.... .+|.+++..|+++..+..|
T Consensus 12 dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~f 85 (408)
T d1c4oa1 12 DQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEYF 85 (408)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcCccceeeC
Confidence 477888888887777765 4677789999998876666543 4689999998665 7799999999987666554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.78 E-value=0.51 Score=52.24 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH-HHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG-WESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q-W~eEfeK 1161 (2693)
+|.|-|.++|.|. ....++....|+|||.+.+.-+.+++.... ....+||++++....+ -...+.+
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~ 68 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 68 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHH
Confidence 4788999999752 334677788999999999888888876643 3345999999866533 3333433
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.67 E-value=0.42 Score=51.46 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1097 SGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1097 eGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+..|..+..++ .+.||....|+|||..+-.++..+.
T Consensus 22 ~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 22 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence 3444444444443 3579999999999998877776664
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.41 E-value=0.28 Score=52.81 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCCccCCCcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1082 qP~~L~ggkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+|..+....- |.+.+..|..+..++. +.||....|+|||..+-+++..+.
T Consensus 9 rP~~~~divg---~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 9 RPETLDEVYG---QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CCSSGGGCCS---CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHccC---cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence 4554443332 3445555555444433 579999999999998877776553
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.88 E-value=1.7 Score=46.51 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|.+.+++|.....++ .+-||..+.|+|||..+-+++..+.
T Consensus 29 ~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 29 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344455554444333 3568999999999999887777664
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.74 E-value=1.3 Score=49.37 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=28.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.||....|+|||..+=+++..+ ..+++.|-...++..|
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~ 82 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMF 82 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhhhcc
Confidence 356889999999999886666432 4567877766666544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.86 E-value=1.1 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.8
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+.||..+.|+|||..+-+++..+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHHcC
Confidence 4699999999999998888876643
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=81.23 E-value=3 Score=46.27 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=75.2
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
-.|||-++....+......|.+|+|.+...-....+...|. ..++.+..++|.++..+|.++...+.+++.+ +
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---i 161 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---I 161 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---E
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---E
Confidence 35899999999998888999999999988876666555554 5688999999999999999999999988877 7
Q ss_pred Eeeeccccc-ccCccccCEEEE
Q 000047 1483 LLSIRAGGV-GVNLQAADTVII 1503 (2693)
Q Consensus 1483 LLSTrAGGe-GLNLQaADtVIi 1503 (2693)
||.|+++-. .+.+.+.-.||+
T Consensus 162 viGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 162 LIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp EEECTHHHHSCCCCSSEEEEEE
T ss_pred EEeehhhhccCCccccccceee
Confidence 778886643 465555555554
|