Citrus Sinensis ID: 000087

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------2160------2170------2180------2190------2200------2210------2220------2230------2240------2250------2260------2270------2280----

MAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

cHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHcHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc

ccHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEEcccccccccccccHHccccccccccccHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHccccHHcccccHHHcccHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHcccccccccccccccccccccccccccccccHHcccccccccccccccHHcccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHcHcHHccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHccccccccccccccccccccccccHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHccHHcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHcccccccccccccccccccc

maqierlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLaakpgspesLQQLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpaFSFAWLELVShrsfmpklligngqkgwPYIQRLLVNLLQFLEPFlrnaelgvpvrfLYKGTLRVLLVLLHdfpeflcdyhftfcdvippsciQMRNIILsafprnmrlpdpstpnlkidllpeirdpprifSEVDAALRAKQMRADVDdylktgqpgssfLSELKQklllppseaasagtrynvplINSLVLYVGMQAIHQLQTRtshaqstgnnsSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAAnqlrypnnhthYFSFVLLYLYAEANQEIIQEQITRVLFERLivnrphpwgLLITFIELiknprynfwnqsfiRCAPEIEKLFESVArscgglkpvddsmvsgwvpdnth

maqierlcanpvpmNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKidllpeirdppRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGglkpvddsmvsgwvpdnth

MAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

******************QIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLA*******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN************IDLL********IF***********************************************GTRYNVPLINSLVLYVGMQAIHQLQT************SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV**************

*AQIER*CANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDAT**R************************SMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTL************LSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPY************QANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK***************************KIPVILKLLKAHI***********IEKFQAVVLDSTPRLQN****************EAEANSYFHQMFSGQLTIEAMVQM**************IFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIER***********************************************************************************************************************************LNIETLVAA*************EVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLK*************************************************************************************************************TPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLR***************AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL************FDPNIYAQGSMGVP**************QRVYEDFV*************************************************************************************************************************************************QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKP****************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCL******************LSFLAIDIYAKLMLSILKCCP**QGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST**********IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPG**********************TRYNVPLINSLVLYVGMQAIH***********************SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESV************************

MAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQ***********GYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSG****************************GSGITQLG**********************************LSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN*******************AAQASAYGLAGGQ*******************************SAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADS********************ERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAAN****************************ANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ************NNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

MAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ************LLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR*************************************************************************************************PFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPW******************************************************************************************************************************AAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGA**AK**KA********************IPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEV**********QSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRT**********SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGL*****************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2284	2.2.26 [Sep-21-2011]
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.316	0.304	0.437	1e-173
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.316	0.304	0.436	1e-173
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.302	0.289	0.447	1e-172
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.317	0.305	0.434	1e-171
P87112		2100	General negative regulato	yes	no	0.523	0.569	0.283	1e-134
P25655		2108	General negative regulato	yes	no	0.290	0.314	0.262	8e-74
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.031	0.197	0.370	0.0001

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function desciption

 Score =  610 bits (1572), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 344/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)

Query: 1516 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1570
            Q L A+    A   + Q + S +  ++L   SRD  AAL + QK  +GL +  S      
Sbjct: 1621 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1680

Query: 1571 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1621
               +   HL +L A++D        C    K++T  +I   +E K+N +    LIR+ L+
Sbjct: 1681 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1737

Query: 1622 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1677
            N+ +Y++H+A+ ++ G N  A  FA+ L++ L+ DE   + V  ++L + ++ L ++ A 
Sbjct: 1738 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH 1797

Query: 1678 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1736
             +  +PE L QL+E+VR+             A  D+A    +   +S  +   E Y+   
Sbjct: 1798 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1843

Query: 1737 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1793
                DP G  E+   L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFF
Sbjct: 1844 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899

Query: 1794 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1849
            R  TE+ V       + +  NP    +P   ++  +  +D + +L+  ++K         
Sbjct: 1900 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1957

Query: 1850 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 1909
            +KI LL+K+L + V  +L+D + +++ F   PY R+FI  LL++++ + V +  NFQ L+
Sbjct: 1958 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2017

Query: 1910 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 1968
            AF N FH+L+P K P F +AWLEL+SHR F+ ++L     QKGWP   +LL++L ++L P
Sbjct: 2018 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2077

Query: 1969 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2028
            FLRN EL  P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2078 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2137

Query: 2029 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2088
            RNMRLPDP TPNLK+D+L EI   PRI +     +   Q + D+D YLKT  P  +FLS+
Sbjct: 2138 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2195

Query: 2089 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2148
            L+  L +    +   G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    
Sbjct: 2196 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2244

Query: 2149 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2208
            SA +DIFQ L  DLDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQI
Sbjct: 2245 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2304

Query: 2209 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2268
            TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2305 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2364

Query: 2269 PVDDSM 2274
                 M
Sbjct: 2365 QAQQVM 2370

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Homo sapiens (taxid: 9606)

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function description

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2284
255541160		2330	ccr4-not transcription complex, putative	0.959	0.940	0.751	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.985	0.927	0.734	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.989	0.932	0.745	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.996	0.928	0.704	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.952	0.934	0.721	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.977	0.926	0.711	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.977	0.923	0.709	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.958	0.938	0.677	0.0
297842912		2379	hypothetical protein ARALYDRAFT_887229 [	0.977	0.938	0.670	0.0
334182230		2377	CCR4-NOT transcription complex subunit 1	0.976	0.938	0.672	0.0

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3510 bits (9101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1718/2286 (75%), Positives = 1926/2286 (84%), Gaps = 95/2286 (4%)

Query: 1    MAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPV 60
            +AQIE LC+NPV MNSA+QIQNI+MFLQ+S   +KHVD  +Q+LSL+Q KD   F L P+
Sbjct: 138  IAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQMLSLVQPKDVFPFFLTPL 197

Query: 61   LPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEIL 120
            L DE+ +A  LR++DLFHEC++++FD +LAEMEKEM+ G+++ ELGYGC+ D+S CKEIL
Sbjct: 198  LSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVKELGYGCTFDSSHCKEIL 257

Query: 121  SLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVK 180
            S F PLTE T+S+ILG IAR HAGLE+NQ+TFS F LALGCS  +DLPPL SW++D+LVK
Sbjct: 258  SNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSISTDLPPLGSWDIDILVK 317

Query: 181  AIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTE 240
             IKQLAP TNWI+VVEN+DYEGFYIP EEAFSFFMSVY++A Q+ FP+H +CGSVWKN  
Sbjct: 318  TIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQDLFPVHVLCGSVWKNAL 377

Query: 241  GQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSE 300
            GQLS L+YAV +PPEVFTFAHS RQL Y DAV G KLQ G ANHAWL LDLL+VLCQL+E
Sbjct: 378  GQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHANHAWLSLDLLEVLCQLAE 437

Query: 301  MGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILH 360
             GH+S  RS+LEYPLK CPE+LLLGM+HINTAY L+QYEVSF VFPMIIKST S+GMIL+
Sbjct: 438  RGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFTVFPMIIKSTTSSGMILY 497

Query: 361  IWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKE 420
            +WH+NPN+V+RGFVDA N+EPDCTI+IL+ICQELKILSSVL+MIP    IRLAV+AS+KE
Sbjct: 498  LWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDMIPYAIGIRLAVLASRKE 557

Query: 421  LVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI 480
            L+DLEKWL+ NL  YKD FFEE               FS++PFHH+ +++N+YME   + 
Sbjct: 558  LIDLEKWLTTNLIAYKDFFFEE---------------FSSKPFHHASSVVNIYMEASSIF 602

Query: 481  LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYF 540
            LK+LKA  GLI S++LS+E+E+    + DS PRLQNG +ADSST E ++DD+EAEANSYF
Sbjct: 603  LKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSSTPEPFSDDVEAEANSYF 662

Query: 541  HQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVL 600
            HQMFSGQLTIEAMVQMLARFKES V+RE  IFECMIGNLFEEYRFFPKYPERQL+IAAVL
Sbjct: 663  HQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEYRFFPKYPERQLKIAAVL 722

Query: 601  FGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHIL 660
            FGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMF+FGTKAL+QFVDRLIEWPQYCNHIL
Sbjct: 723  FGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALDQFVDRLIEWPQYCNHIL 782

Query: 661  QISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQ 720
            QISHLR+TH+E+V+FIER LARISSGHLESDG +  A+H H  SQA+SGNGE+    I Q
Sbjct: 783  QISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGLSQASSGNGELISVNIPQ 842

Query: 721  LGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHN 780
              QQLSS + +QQR ES +D+RHKV  ASS+D K +LSS GQ SSVAPL D S AQK  +
Sbjct: 843  SVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQ-SSVAPLSDNSIAQK--S 899

Query: 781  AVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFI 840
            A  A AMLS S GF RPSRGVTSTKFGSALNI TL AAAERRETPIEAPASE+QDKISFI
Sbjct: 900  AAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRETPIEAPASEIQDKISFI 959

Query: 841  INNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALN 900
            INNISA N+EAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKV+SKALN
Sbjct: 960  INNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVSSKALN 1019

Query: 901  REIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLII 960
            +EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN VLR REIDPKSLII
Sbjct: 1020 KEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLRGREIDPKSLII 1079

Query: 961  EAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIE 1020
            EAYEKGLMIAVIPFTSK                                           
Sbjct: 1080 EAYEKGLMIAVIPFTSK------------------------------------------- 1096

Query: 1021 VLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVD 1080
            VLFKNLGVDMKDI PTSLLKDRKRE+EGNPDFSNKDVG SQPQ+VPEVKP I+SPL HVD
Sbjct: 1097 VLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQIVPEVKPGIISPLNHVD 1156

Query: 1081 LPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQ 1140
            LPL+VA+PPN+ G THLL QYAAP+ LS GTL EDEKLAALG+SDQLP  QGLFQA+ +Q
Sbjct: 1157 LPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGMSDQLPPGQGLFQATPNQ 1216

Query: 1141 SPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSI 1200
            SPFSVSQL T +PN GT VIINQK  + GLHLHFQR+VP+ MDRA+KEIVS IVQRSVSI
Sbjct: 1217 SPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMDRAVKEIVSSIVQRSVSI 1276

Query: 1201 ATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG 1260
            ATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLR SIS+QLRNSLQG
Sbjct: 1277 ATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRNSISTQLRNSLQG 1336

Query: 1261 LTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSS 1320
            L   S+LLE AVQL TNDNLDLGCA IEQAATDKAIQTID EIAQQLSLRRKHR+GVG +
Sbjct: 1337 LNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEIAQQLSLRRKHRDGVGPT 1396

Query: 1321 FFDPNIYAQGSMGV-PEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTS 1379
            FFD N+Y+QGSMGV PEALRPKPGHLSVSQQRVYEDFVRLPWQNQS QGSH +  GS TS
Sbjct: 1397 FFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSGQGSHTIPMGSSTS 1456

Query: 1380 SGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIG 1439
            +   A A AYG   GQ N GYSS+ G+ GF+AVSR  D+ S  TES SA  LS+S +HIG
Sbjct: 1457 AVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDATESNSAAILSSSSIHIG 1516

Query: 1440 AADGGILHNSESESVNAAFTPAA-TELYAADSTEPVKEPGASSQSLPSTAAPERIGSSIL 1498
            A DG I  NSE+ + + +F+ AA    ++ D+++ VKE G SSQ + S+AA +R+ +S  
Sbjct: 1517 ATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISSQPISSSAASDRLVTSAS 1576

Query: 1499 EPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQK 1558
            EP+L TRDALDKY IVAQKL+AL+ +D RE E+QG+I+EVPEIILRC+SRDEAALAVAQK
Sbjct: 1577 EPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEIILRCVSRDEAALAVAQK 1636

Query: 1559 VFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRS 1618
            VFKGLYENASNN H +A LAILAAIRDVCKLVVKELTSWVIYSDEERKFN+DIT+GLIRS
Sbjct: 1637 VFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIRS 1696

Query: 1619 ELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAK 1678
            ELLNLAEYNVHMAKLIDGGRNK ATEF+ISL+Q LV +ES+V ISELHNLVDALAKLAAK
Sbjct: 1697 ELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESKV-ISELHNLVDALAKLAAK 1755

Query: 1679 PGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESV 1738
            PGS ESLQQLIEIVRNP AN+   SG T  K+DK+RQS+DKK                  
Sbjct: 1756 PGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKK------------------ 1797

Query: 1739 DPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE 1798
                      VS+LFAEW++IC+LPG+NDAA T Y+LQLHQNGLLKGDDMTDRFFR +TE
Sbjct: 1798 ----------VSLLFAEWFRICDLPGANDAASTHYILQLHQNGLLKGDDMTDRFFRIITE 1847

Query: 1799 VSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKI 1858
            +SVAHCLSSEVIN G LQSPQQ Q+LSFLAIDIYAKL+ SILK   VEQGS++ FLLSKI
Sbjct: 1848 LSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK---VEQGSNRFFLLSKI 1904

Query: 1859 LTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVL 1918
            L VTV+FI KD+EEKK SFNPRPYFRLF+NWLLD+ S DP+ DG+N QIL+AFANAFH L
Sbjct: 1905 LAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIIDGTNLQILTAFANAFHNL 1964

Query: 1919 QPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVP 1978
            QPLKVPAFSFAWLELVSHRSFMPKLL GN QKGWPY+QRLLV+L QFLEPFLR+AELG+P
Sbjct: 1965 QPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFLEPFLRSAELGMP 2024

Query: 1979 VRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST 2038
            V FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST
Sbjct: 2025 VHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST 2084

Query: 2039 PNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPS 2098
            PNLKIDLLPEIR+ P I SEVDAAL+AKQM+ADVD+YLKT   GSSFLSELKQ+LLL PS
Sbjct: 2085 PNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQGSSFLSELKQRLLLSPS 2144

Query: 2099 EAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTL 2158
            EAASAGTRYNVPLINSLVLY GMQAI QLQ R  H+QS+GN + L   LV AALDI+QTL
Sbjct: 2145 EAASAGTRYNVPLINSLVLYAGMQAIQQLQARAPHSQSSGNTAPLAVLLVDAALDIYQTL 2204

Query: 2159 IQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIV 2218
            I +LDTEGRYLFLNA ANQLRYPNNHTHYFSFVLLYL+AE+NQEIIQEQITRVL ERLIV
Sbjct: 2205 IVELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLIV 2264

Query: 2219 NRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGW 2278
            NRPHPWGLLITFIELIKNPRYNFWN+SFIRCAPEIEKLFESVARSCGGLKP+D+SMVSGW
Sbjct: 2265 NRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDESMVSGW 2324

Query: 2279 VPDNTH 2284
            V + TH
Sbjct: 2325 VSEGTH 2330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842912\|ref\|XP_002889337.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi\|297335179\|gb\|EFH65596.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182230\|ref\|NP_001184889.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi\|332189257\|gb\|AEE27378.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2284
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.321	0.309	0.423	3.6e-307
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.227	0.218	0.514	1.8e-303
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.227	0.218	0.514	1.9e-303
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.227	0.218	0.514	2.3e-303
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.227	0.218	0.514	2.3e-303
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.227	0.218	0.514	2.4e-303
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.175	0.158	0.585	4e-300
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.227	0.243	0.516	3.9e-297
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.345	0.314	0.393	3.5e-270
WB\|WBGene00002845		2641	let-711 [Caenorhabditis elegan	0.284	0.245	0.365	2.4e-194

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1400 (497.9 bits), Expect = 3.6e-307, Sum P(5) = 3.6e-307
 Identities = 327/773 (42%), Positives = 451/773 (58%)

Query:  1516 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNNLHFS 1574
             Q L A+    A   + Q + S +  +++   SRD  AAL + QK  +GL +  S      
Sbjct:  1621 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSG----- 1675

Query:  1575 AHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLI 1634
             A   +L + R+   LV+K L     Y  +    N+ IT  LI  E  +  +YNV   +L+
Sbjct:  1676 ADPELLLSYRECHLLVLKALQDGRAYGPQW--CNKQITRCLI--ECRDEYKYNVEAVELL 1731

Query:  1635 DGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALA--KLAAKPGSPESLQQLIE-I 1691
                      ++ + L Q++    + + ++    LV  L   + +    +   L   IE +
Sbjct:  1732 IRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETL 1791

Query:  1692 VRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTA-NREDYN-IPESVD-PDPVGFPEQ 1748
             +R                 D  R + +     H    N   ++ I ++ +  DP G  E+
Sbjct:  1792 MRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREK 1851

Query:  1749 VSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE--VSVAH 1803
                L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFFR  TE  V +++
Sbjct:  1852 AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY 1911

Query:  1804 CLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIFLLSKILTVT 1862
                +E  +P T           +  +D + +L+  ++K       + +KI LL+K+L + 
Sbjct:  1912 RAQAEQQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIV 1969

Query:  1863 VKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLK 1922
             V  +++D + ++  F   PY R+FI  LL++++ + V +  NFQ L+AF N FH+L+P K
Sbjct:  1970 VGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTK 2029

Query:  1923 VPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRNAELGVPVRF 1981
              P F +AWLEL+SHR F+ ++L    Q KGWP   +LL++L ++L PFLRN EL  P++ 
Sbjct:  2030 APGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQI 2089

Query:  1982 LYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNL 2041
             LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNL
Sbjct:  2090 LYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNL 2149

Query:  2042 KIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAA 2101
             K+D+L EI   PRI +     + + Q + D+D YLKT  P  +FLSEL+  L +    + 
Sbjct:  2150 KVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSNLQV----SN 2203

Query:  2102 SAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQD 2161
               G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    SA +DIFQ L  D
Sbjct:  2204 EPGNRYNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVD 2256

Query:  2162 LDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRP 2221
             LDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQITRVL ERLIVNRP
Sbjct:  2257 LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRP 2316

Query:  2222 HPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2274
             HPWGLLITFIELIKNP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct:  2317 HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2284
pfam04054		375	pfam04054, Not1, CCR4-Not complex component, Not1	1e-180
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	1e-87
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	9e-64
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	4e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	1e-34

>gnl\|CDD\|217865 pfam04054, Not1, CCR4-Not complex component, Not1	Back alignment and domain information

 Score =  554 bits (1431), Expect = e-180
 Identities = 201/385 (52%), Positives = 258/385 (67%), Gaps = 19/385 (4%)

Query: 1888 NWLLDMSSLDPVADGSNF-QILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG 1946
            + L +++ LD +       Q   AFA   H LQP+K P F FAWLEL+SHR F+P++L  
Sbjct: 1    SLLYELNRLDSLESKELDSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRMLRL 60

Query: 1947 NGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 2006
              QKGWP   +LL++LL+FL+ FL+NA L   V+ LYKGTLR+LLVLLHDFPEFL +YH+
Sbjct: 61   PNQKGWPLYVKLLIDLLKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHY 120

Query: 2007 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2066
              CD IPP+CIQ+RN+ILSAFP+NM+LPDP TP LK+D LPEI++ P+I  +  A L++ 
Sbjct: 121  QLCDAIPPNCIQLRNLILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSA 180

Query: 2067 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLYVGMQ 2122
             ++  VD+YL+   P  S L  +   L L   E          + NV LIN+LVL+VG+Q
Sbjct: 181  GLKKPVDNYLRIR-PSESLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQ 239

Query: 2123 AIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 2182
            A+               N++      S  + +   L  +LD EGRY  LNA ANQLRYPN
Sbjct: 240  AV-------LEILKKSQNANF--NTKSPHMALLSNLANELDPEGRYYLLNAIANQLRYPN 290

Query: 2183 NHTHYFSFVLLYLY----AEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPR 2238
            +HTHYFS V+L+L+     E+ +E IQEQITRVL ERLIVN+PHPWGLLITFIELIKNP 
Sbjct: 291  SHTHYFSCVILHLFGSDEWESQKEDIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPD 350

Query: 2239 YNFWNQSFIRCAPEIEKLFESVARS 2263
            Y FW   FI+ APEIEKLF+S+ARS
Sbjct: 351  YKFWELPFIKSAPEIEKLFDSLARS 375

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2284
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
PF04054		379	Not1: CCR4-Not complex component, Not1; InterPro:	100.0
PF12842		147	DUF3819: Domain of unknown function (DUF3819); Int	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	97.54
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	91.47
KOG1467		556	consensus Translation initiation factor 2B, delta	83.8

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.7e-293  Score=2664.48  Aligned_cols=1727  Identities=28%  Similarity=0.426  Sum_probs=1405.3

Q ss_pred             CCCCCCCHHHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCcccccccCCcccChhh-hHHH
Q 000087          168 PPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSF  245 (2284)
Q Consensus       168 ~~~~~Wn~~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~fpi~~l~~~~W~N~~~-Qlsf  245 (2284)
                      ++.+.||.-..+.+++..+..+||.+|..+||.+.|.|+....+..++++|-. +.+.+||.+.+|. .|||... ||++
T Consensus       231 ~D~~~w~~v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i  309 (2005)
T COG5103         231 PDRGEWNLVAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFI  309 (2005)
T ss_pred             ccccccchHHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhh
Confidence            34678999999999999999999999999999999999977766666666555 4567899999995 9999999 5666


Q ss_pred             HHHHhhCCCCccccCC-CCcccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHH
Q 000087          246 LRYAVASPPEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLL  323 (2284)
Q Consensus       246 l~~~l~~p~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldl~e~L~~Lae~~~~~~v~~l~~~p~~~~pe~ll  323 (2284)
                      .-|..+.+...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++|   +...||.+.
T Consensus       310 ~lhi~s~~~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~  385 (2005)
T COG5103         310 RLHIESDEKRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCA  385 (2005)
T ss_pred             heeeeecccchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHH
Confidence            6677777777887754 345555554443333222 24779999999999993 33332222223466   789999999


Q ss_pred             HHhhcc-----CcchhHHHHHHHHhhhHHhhc-CCCchHHHHHHHhhCChhHHHHHHHhhccCCccHHHHHHHHHHhhhh
Q 000087          324 LGMAHI-----NTAYNLIQYEVSFAVFPMIIK-STMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKIL  397 (2284)
Q Consensus       324 lgl~~i-----~~~~~~l~~ell~~l~~~fl~-~~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L  397 (2284)
                      .||..+     +-.||+.+.+.+...+-+++. ..++++|+..+.+.+|+++++...-...+|...++|++|+.-|+|.|
T Consensus       386 a~L~~~~~~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l  465 (2005)
T COG5103         386 AGLGFVQPKFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKML  465 (2005)
T ss_pred             HHHHHhhhhhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCch
Confidence            999754     447999999988888888775 55889999999999999999999877899999999999999999999


Q ss_pred             hhhhcccCchhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccc
Q 000087          398 SSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNL  472 (2284)
Q Consensus       398 ~~lL~~~p~~f~idLA~lAsrre~l~lekWl~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L  472 (2284)
                      +.+.|..|..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.+   ..+-+  +
T Consensus       466 ~~V~n~lP~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f  540 (2005)
T COG5103         466 PLVSNLLPPEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--F  540 (2005)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--e
Confidence            9999999999999999999999999999999999987665 3    99999999999997543311111   11223  3


Q ss_pred             cchhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCCC-----CCCCCchhHHHHHHHHHHHhhcc
Q 000087          473 YMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADSS-----TSEGYADDIEAEANSYFHQMFSG  546 (2284)
Q Consensus       473 ~~etv~~lL~~L~~~~~~~~s~~l~e~l~~~~~~~i~~~PrL~n~~-~~d~~-----~~~~~~~dIE~Ean~yfqkmYs~  546 (2284)
                      +..|+-.+|..+......     -.+.++.++..|++.||||++.| +||+.     +.++++.|||+||.+|||+||++
T Consensus       541 ~~~tvieil~t~~~~V~q-----~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~  615 (2005)
T COG5103         541 PLNTVIEILGTFTKAVEQ-----YIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNS  615 (2005)
T ss_pred             ehhhHHHHHHHhHHHHHH-----HHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHh
Confidence            445655555544332211     15677888889999999999999 88873     45679999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhcCCcccchhhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHh
Q 000087          547 QLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAL  626 (2284)
Q Consensus       547 eisI~~iv~~L~r~K~S~~~rdqdiFaCMIh~LFdEYrFf~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAl  626 (2284)
                      +++|+++|+.||+|++|++|||+|+|+|+-|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++
T Consensus       616 ~~~I~~~I~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~l  695 (2005)
T COG5103         616 QRGIESSINQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSL  695 (2005)
T ss_pred             cccHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccc
Q 000087          627 RKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQA  706 (2284)
Q Consensus       627 rkp~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll~ip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~  706 (2284)
                      ++|++||||+||+|||++|+.||++||+||+.++.||.|+. .+++|+.|-++..    ..+.       .         
T Consensus       696 k~P~~skmf~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~---------  754 (2005)
T COG5103         696 KHPENSKMFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------E---------  754 (2005)
T ss_pred             cCCCchhhHHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------c---------
Confidence            99999999999999999999999999999999999999965 9999998876642    1100       0         


Q ss_pred             cCCCCCccCCcccccccchhhHHHhhhcccccccccccccccccCCCCCCcccCCCCCCcCCCCCCchhhhhcccCCCcc
Q 000087          707 TSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPA  786 (2284)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~  786 (2284)
                                                                 .+.++|.-+.++.       .                
T Consensus       755 -------------------------------------------~Eka~p~~pm~pl-------~----------------  768 (2005)
T COG5103         755 -------------------------------------------VEKANPTHPMLPL-------E----------------  768 (2005)
T ss_pred             -------------------------------------------ccccCCCCcccch-------h----------------
Confidence                                                       0000111000000       0                


Q ss_pred             ccccCCCccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchh
Q 000087          787 MLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYP  866 (2284)
Q Consensus       787 ~~~~~~~~~~p~~~~~~~~~~~a~ni~tL~~~~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~~~y~~  866 (2284)
                            .|++-       -+              +-+...|.-++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+
T Consensus       769 ------~fv~~-------~v--------------~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~  821 (2005)
T COG5103         769 ------DFVRL-------IV--------------KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVG  821 (2005)
T ss_pred             ------hhhee-------Ee--------------ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCccccc
Confidence                  01110       00              0012244556777788999999999999999999999999999999


Q ss_pred             hhhHHHHHhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHhhhhhHhhhhhhcCc
Q 000087          867 WFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ  946 (2284)
Q Consensus       867 WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~~L~~~Vl~~Ty~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTLarNk  946 (2284)
                      ||+.|||.+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+....  +.+|+++|||||+|||+|||||||
T Consensus       822 wfs~y~vtqR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~Nk  899 (2005)
T COG5103         822 WFSIYMVTQRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNK  899 (2005)
T ss_pred             ceeeEEEEeeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999997644  889999999999999999999999


Q ss_pred             ccccCCCChhHHHHHHHhcCceEEEechhhhhccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhc
Q 000087          947 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNL 1026 (2284)
Q Consensus       947 PI~~k~ld~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L 1026 (2284)
                      ||+|+++|||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+|+|
T Consensus       900 pIt~~q~~Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~l  979 (2005)
T COG5103         900 PITSEQFDFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHL  979 (2005)
T ss_pred             ccccccccHHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCcCccCCCCCCCCCCCcCCCCCCCCCccccccccc
Q 000087         1027 GVDMKDITPTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAA 1103 (2284)
Q Consensus      1027 ~ld~~dieps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~ 1103 (2284)
                      |++++.|||++.++++...   ++.               ..|+.    +  ++ .+.|.+          ..+++||..
T Consensus       980 nv~~~~ikPs~~~~n~~V~ks~LEk---------------e~~Ed----v--L~-a~~~d~----------~~~~~qyi~ 1027 (2005)
T COG5103         980 NVELVPIKPSKSLGNHLVLKSRLEK---------------ELPED----V--LN-AKFPDG----------TDYLAQYII 1027 (2005)
T ss_pred             ceeeccCChhhhhCcHHHHHHHHhh---------------hchHH----H--Hh-hhcccc----------chHHHHHHH
Confidence            9999999999999876531   110               01110    0  00 001100          012334331


Q ss_pred             ccccCcCcchhHHHHhhccCCCCCCcccccccccCCCCCCCccccccCCCCCCccEeecccccccccchhhhhhHHHHHH
Q 000087         1104 PLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD 1183 (2284)
Q Consensus      1104 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iV~~Aid 1183 (2284)
                      .          +                        ++.++..+..       ..+...|       -|.+|++.++|++
T Consensus      1028 ~----------~------------------------sSq~TvtD~v-------a~~~g~P-------~PaiK~~~Qlal~ 1059 (2005)
T COG5103        1028 E----------D------------------------SSQITVTDLV-------ARHVGSP-------KPAIKNLTQLALD 1059 (2005)
T ss_pred             H----------h------------------------hhcchHHHHH-------HHHcCCC-------ChHHHHHHHHHHH
Confidence            0          0                        0011111111       1111222       2899999999999


Q ss_pred             HHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCC
Q 000087         1184 RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTI 1263 (2284)
Q Consensus      1184 RAIrEII~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~ 1263 (2284)
                      .+||||++.|||||+.||++||+.|++||||||.|++++..||++||++|||+||+|||+|||++.|.+++|++..++.+
T Consensus      1060 ~SVrEI~~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~s 1139 (2005)
T COG5103        1060 LSVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCS 1139 (2005)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcCcccccccccCCCCCCCCCC
Q 000087         1264 ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKP 1342 (2284)
Q Consensus      1264 ~~~~~Eq~i~~~vnDNldLac~iIEKaA~EKAi~eIDe~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPepLr~kp 1342 (2284)
                      ....+-+++..++++|++.||.+||||+++|++++|+..|+.++..||+||++ ++.||+|+++ +..+++||++|+++-
T Consensus      1140 v~~~~ae~vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~ 1218 (2005)
T COG5103        1140 VLDFSAEKVDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSI 1218 (2005)
T ss_pred             hhhchHHHHHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCccccccc
Confidence            66778888999999999999999999999999999999999999999999998 7999999996 555788999999999


Q ss_pred             CCCChhHHHhhhhhhcCcCCCCCCCCCCccccCccCCCCchhhhhhcccCCCCCCCCCCCCCCCCCcccccCCcccCCCC
Q 000087         1343 GHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGT 1422 (2284)
Q Consensus      1343 gGl~~~Q~~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1422 (2284)
                      ||+||+|+++||||.|+|-..-   ++|.+.++.-+          ....+++         ++++     -|.++...+
T Consensus      1219 ~~~Tpqqf~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda-----l~~nl~nt~ 1271 (2005)
T COG5103        1219 GKATPQQFSLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA-----LNNNLNNTV 1271 (2005)
T ss_pred             CCcCHHHhhhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh-----hccccchhh
Confidence            9999999999999999664221   22222211100          0000000         0000     000000000


Q ss_pred             cccccccccccccccccCCCCCcccccccchhhccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhcccccccccc
Q 000087         1423 TESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSL 1502 (2284)
Q Consensus      1423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1502 (2284)
                        ...++|.   +.++...            ... . +.  ...+.            ..+++.. .+..+.        
T Consensus      1272 --e~eAnQt---a~~yq~n------------~L~-i-~~--ql~Ql------------~~~~Py~-~~~~V~-------- 1309 (2005)
T COG5103        1272 --ENEANQT---ALEYQEN------------LLI-I-KA--QLVQL------------SKKIPYS-SKKNVI-------- 1309 (2005)
T ss_pred             --hhHHHHH---HHHHHHH------------hhh-h-hh--HHHHh------------cccCCcc-hhhcCc--------
Confidence              0000000   0000000            000 0 00  00000            0011111 011111        


Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCcchhHHHHHhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH
Q 000087         1503 QTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAA 1582 (2284)
Q Consensus      1503 ~~~~~le~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~ev~~~~L~~ 1582 (2284)
                       .    +..|-.   +.+     +. +++..++.+|...|.++   |+.++.++|.+++.|+..+.+++++||+.++||+
T Consensus      1310 -a----D~e~~~---lkE-----~~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEk 1372 (2005)
T COG5103        1310 -A----DEEHGL---LKE-----GK-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEK 1372 (2005)
T ss_pred             -c----hhhhhH---HHh-----hH-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHH
Confidence             0    111111   111     11 35667777777777665   8999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCChhhHHHHHHHHHhcCCChhhHHHHHHHHHHHhcCCcchh-
Q 000087         1583 IRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV- 1661 (2284)
Q Consensus      1583 L~~~~~~~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~- 1661 (2284)
                      ||++|-+++|+|.||++|+.|.||||+|+|.+||++||||..|||.+|++.|.+.. ..++|||+.|++.++.+|.++. 
T Consensus      1373 ic~~S~kt~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~ 1451 (2005)
T COG5103        1373 ICKISFKTQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICT 1451 (2005)
T ss_pred             HHhHhHHHhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceee
Confidence            99999999999999999999999999999999999999999999999999997644 4479999999999888887665 


Q ss_pred             hhhHHHHHHHHHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCCCCCCCCCCCCCC
Q 000087         1662 ISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPD 1741 (2284)
Q Consensus      1662 ~~df~~tleaL~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1741 (2284)
                      ..||.+|+|.|+.-.    + +.++++.+++.+...            .         .+..                ..
T Consensus      1452 ~~dFI~tLe~la~s~----d-~~vk~f~~~~~~tm~------------~---------~v~k----------------gn 1489 (2005)
T COG5103        1452 VYDFICTLEMLAGSS----D-PKVKDFFQKISNTMM------------H---------IVAK----------------GN 1489 (2005)
T ss_pred             HHHHHHHHHHHhccC----C-hhHHHHHHHHHHhhh------------h---------cccc----------------cc
Confidence            489999999886432    2 455777766643100            0         0000                11


Q ss_pred             CCChHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCcc
Q 000087         1742 PVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQS 1821 (2284)
Q Consensus      1742 ~~~~~eq~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~~~~ 1821 (2284)
                      ...+.||+..+|.|||++.++...+|..-..|+.||+++|+++..|+...|||+.+|.+|..|.+..            +
T Consensus      1490 Kqq~ndqi~iVf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------p 1557 (2005)
T COG5103        1490 KQQLNDQIIIVFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------P 1557 (2005)
T ss_pred             cccccceEEEeeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------C
Confidence            2356789999999999999999999999999999999999999999999999999999999997432            2


Q ss_pred             ccccchhhHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCC
Q 000087         1822 QSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVAD 1901 (2284)
Q Consensus      1822 ~~~~f~~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnqrpyfRlfs~LL~el~~~d~~l~ 1901 (2284)
                      .+.+|..||||+.||+.++++. +..+.++..|++||++.+++|+.++|..+++.||+|+||||||++|.||.......+
T Consensus      1558 ta~~y~~IDal~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~ 1636 (2005)
T COG5103        1558 TAYCYLKIDALPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDT 1636 (2005)
T ss_pred             cccceeeccchHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccc
Confidence            4789999999999999999995 455567889999999999999999999999999999999999999999977543444


Q ss_pred             cchHHHHHHHHHHhhhcCCCCCCchhhHHhHHhhcccchHHhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHH
Q 000087         1902 GSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRF 1981 (2284)
Q Consensus      1902 ~~~~~il~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~ll~Fl~~~L~~~~l~~~i~~ 1981 (2284)
                      +.-..+.+.|-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+.  ++...+...+++
T Consensus      1637 s~fv~~~Sv~y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ 1714 (2005)
T COG5103        1637 SCFVNNRSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEA 1714 (2005)
T ss_pred             hhhhhhHHHHHHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHH
Confidence            555678889999999999999999999999999999999999999999999999999999999998  788888899999


Q ss_pred             HhHhHHHHHHHHHhcchhHHHHHhHhhhccCCCCCccccceeecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHH
Q 000087         1982 LYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDA 2061 (2284)
Q Consensus      1982 lYkGtLRilLvLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~LpEi~~~P~i~~d~~~ 2061 (2284)
                      +|+|+||+.||++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|...
T Consensus      1715 ly~Gflr~iLv~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v 1794 (2005)
T COG5103        1715 LYCGFLRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIV 1794 (2005)
T ss_pred             HHhcchheeeeeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhhhHHHHHHhccCCCCccHHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhcccCCccccC
Q 000087         2062 ALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTG 2138 (2284)
Q Consensus      2062 ~L~~~~lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~ 2138 (2284)
                      .|  .++++.+|  |  |.+..+.+..+.+++...-+.....|..   ++-..+-++|+|+|+.++...     .+    
T Consensus      1795 ~l--e~~~s~~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~-----~~---- 1859 (2005)
T COG5103        1795 PL--EGQNSFFD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFM-----IE---- 1859 (2005)
T ss_pred             ch--hhcccchh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHH-----HH----
Confidence            87  47888888  5  5566677777777665543333233322   245678899999999985532     11    


Q ss_pred             CCCchhhhh-hhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhccc----chhhHHHHHHHHH
Q 000087         2139 NNSSLTAFL-VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLF 2213 (2284)
Q Consensus      2139 ~~~~~~~f~-~s~~~~il~~L~~~ld~EgRY~ll~aiaNqLRYPN~HT~~FS~~lL~LF~~~~----~~~IqEqItRVLL 2213 (2284)
                            .|+ +++.+.++..++..++++.||+++.||++||||||+||+||||++|++|.+++    +-.||||||||||
T Consensus      1860 ------~f~~ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lL 1933 (2005)
T COG5103        1860 ------RFMHKSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLL 1933 (2005)
T ss_pred             ------HHhccccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence                  233 36689999999999999999999999999999999999999999999998763    4579999999999


Q ss_pred             HHhccCCCCChHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000087         2214 ERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2271 (2284)
Q Consensus      2214 ERlIv~rPHPWGLliTFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2271 (2284)
                      ||+||||||||||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus      1934 eRII~NrPH~WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103        1934 ERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred             HHHHcCCCCcchhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence            9999999999999999999999999999999999999999999999999999876544

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2284
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		7e-58
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		7e-58
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		8e-37
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		4e-24

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

Iteration: 1

Score = 223 bits (569), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 833 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 892 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 7 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 66 Query: 893 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 952 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 67 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 126 Query: 953 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1010 +D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 127 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 186 Query: 1011 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1044 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 187 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 220

PyMOL of 4gmj

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2284
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 76.0 bits (186), Expect = 1e-13
 Identities = 95/687 (13%), Positives = 198/687 (28%), Gaps = 210/687 (30%)

Query: 145 LEDNQNTFSTFTLALGCSTMSDLPP--LSSWNVDVLVKAIKQLAPNTN-------WIRVV 195
           L   ++ F        C  + D+P   LS   +D ++ +      +         W  + 
Sbjct: 22  LSVFEDAFVD---NFDCKDVQDMPKSILSKEEIDHIIMS-----KDAVSGTLRLFWTLLS 73

Query: 196 ENLD-YEGFYIPTEEA-FSFFMSVYKYACQEPFP---LHAVCGSVWKNTEGQLSFLRYAV 250
           +  +  + F        + F MS  K   ++P     ++        N   Q+ F +Y V
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQV-FAKYNV 131

Query: 251 ASPPEVFTFAHSARQL---PYVDAVPGLKLQSGQANHAWLCLDLL---DVLCQLS----- 299
           +          +  +L     V  + G+   SG+    W+ LD+     V C++      
Sbjct: 132 SRLQPYLKLRQALLELRPAKNV-LIDGVL-GSGKT---WVALDVCLSYKVQCKMDFKIFW 186

Query: 300 -EMGHASFARSMLE------YPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKST 352
             + + +   ++LE      Y +           ++I    + IQ E+       ++KS 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSK 241

Query: 353 MSNG--MIL-HIWHVNPNIVLRGFVDAQNMEPDCTIRIL------------------EIC 391
                 ++L ++ +         F +       C  +IL                   I 
Sbjct: 242 PYENCLLVLLNVQNAK---AWNAF-NLS-----C--KILLTTRFKQVTDFLSAATTTHIS 290

Query: 392 QE-----------LKILSSVLEMIP----------SPFAIRLAVI-ASQKELVD-LEKWL 428
            +             +L   L+  P          +P  +  ++I  S ++ +   + W 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWK 348

Query: 429 SINLSTYKDVFFEECLKFVKEVQFGRS-QDFSAQPFHHSGALLNLYME--KIPVILKLLK 485
            +N      +  E  L  ++  ++ +     S            ++     IP    LL 
Sbjct: 349 HVNCDKLTTII-ESSLNVLEPAEYRKMFDRLS------------VFPPSAHIP--TILL- 392

Query: 486 AHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFS 545
               LI    +  ++     VV++    L      +    E                   
Sbjct: 393 ---SLIWFDVIKSDVM----VVVNK---LHKYSLVEKQPKEST---------ISIP---- 429

Query: 546 GQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSII 605
                   + +  + K  +    H        ++ + Y     +    L I   L     
Sbjct: 430 -------SIYLELKVKLENEYALHR-------SIVDHYNIPKTFDSDDL-IPPYLDQYFY 474

Query: 606 KHQLVTHLTLGIALRGVLDALRKP------ADSKMFVFGT--KALEQFVDRLIEWPQYCN 657
            H +  HL   I     +   R         + K+    T   A    ++ L +   Y  
Sbjct: 475 SH-IGHHLK-NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 658 HILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSG 717
           +I         +  LV  I   L +I   +L             + S+ T          
Sbjct: 533 YICDND---PKYERLVNAILDFLPKIEE-NL-------------ICSKYTD--------- 566

Query: 718 ITQLGQQLSSQIQLQQRSESVVDDRHK 744
           + ++         L    E++ ++ HK
Sbjct: 567 LLRIA--------LMAEDEAIFEEAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2284
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	100.0
4b89_A		249	General negative regulator of transcription subun;	100.0
4b8b_A		603	General negative regulator of transcription subun;	100.0

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

Probab=100.00  E-value=3.3e-81  Score=707.62  Aligned_cols=218  Identities=48%  Similarity=0.855  Sum_probs=214.8

Q ss_pred             CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhhhhHHHHHhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHH
Q 000087          829 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY  908 (2284)
Q Consensus       829 Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~~~y~~WFA~YLV~kRAsiEPNfH~LYl~fl~~l~~~~L~~~Vl~~Ty  908 (2284)
                      ++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||+||||+|||||+||++|+++++++.|+++|+++||
T Consensus         3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~   82 (229)
T 4gmj_A            3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY   82 (229)
T ss_dssp             SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccChHHHHHHHhhhhhHhhhhhhcCcccccCCCChhHHHHHHHhcCc--eEEEechhhhhccccCCCc
Q 000087          909 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL  986 (2284)
Q Consensus       909 ~~i~~LL~se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~~~~S~  986 (2284)
                      ++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|.  |++|||||||||++|++|+
T Consensus        83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~  162 (229)
T 4gmj_A           83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV  162 (229)
T ss_dssp             HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999995  9999999999999999999


Q ss_pred             cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhhc
Q 000087          987 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1046 (2284)
Q Consensus       987 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~dieps~~L~~r~~~~ 1046 (2284)
                      ||||||||||+||++|+|||++||||+|||||||||||+|++|++||+|+++|++|++..
T Consensus       163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~  222 (229)
T 4gmj_A          163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK  222 (229)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred             cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence            999999999999999999999999999999999999999999999999999999998743

PyMOL of 4gmj

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00