Citrus Sinensis ID: 000096
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2260 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.122 | 0.175 | 0.489 | 3e-71 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.122 | 0.173 | 0.489 | 4e-71 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.119 | 0.164 | 0.438 | 5e-70 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.121 | 0.171 | 0.484 | 1e-69 | |
| Q3TKT4 | 1613 | Transcription activator B | no | no | 0.119 | 0.166 | 0.477 | 1e-69 | |
| Q8K1P7 | 1613 | Transcription activator B | no | no | 0.121 | 0.170 | 0.484 | 1e-69 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.111 | 0.154 | 0.484 | 1e-67 | |
| P22082 | 1703 | Transcription regulatory | yes | no | 0.141 | 0.187 | 0.403 | 2e-66 | |
| P32597 | 1359 | Nuclear protein STH1/NPS1 | no | no | 0.142 | 0.237 | 0.409 | 5e-64 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | yes | no | 0.139 | 0.188 | 0.402 | 8e-64 |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 196/294 (66%), Gaps = 18/294 (6%)
Query: 18 SVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH--YLPPIV------RLCGKLEMLDRLL 69
++ N++M+LR ICNHPY+ Q H EE +H Y ++ R GK E+LDR+L
Sbjct: 1009 TLMNTIMQLRKICNHPYMFQ-HIEES---FAEHLGYSNGVINGAELYRASGKFELLDRIL 1064
Query: 70 PKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 129
PKL+AT+HRVL F MT L+ +MEDY F+ + YLRLDG T DR AL+ KFN+ S +
Sbjct: 1065 PKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQY 1124
Query: 130 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 189
FIFLLS RAGG+G+NLQAADTV+IFD+DWNP DLQAQ RAHRIGQ+ +V VLR TV +
Sbjct: 1125 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1184
Query: 190 VEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLL-RECKKEEAAPVLDDDAL 248
VEE++ A+A++KL V + I AG FD +S+ +RR +L+++L E + EE V DD+ L
Sbjct: 1185 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETL 1244
Query: 249 NDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDD 302
N ++AR E E D+F +D RR E+ ++ R + D LPS ++ DD
Sbjct: 1245 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED-----ELPSWIIKDD 1293
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STH1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2260 | ||||||
| 255551623 | 3502 | conserved hypothetical protein [Ricinus | 0.434 | 0.280 | 0.516 | 0.0 | |
| 357478579 | 3310 | Helicase swr1 [Medicago truncatula] gi|3 | 0.432 | 0.295 | 0.475 | 0.0 | |
| 357478577 | 3312 | Helicase swr1 [Medicago truncatula] gi|3 | 0.432 | 0.295 | 0.475 | 0.0 | |
| 449433367 | 2086 | PREDICTED: uncharacterized protein LOC10 | 0.301 | 0.326 | 0.597 | 0.0 | |
| 449495482 | 2108 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.301 | 0.323 | 0.597 | 0.0 | |
| 297826111 | 3451 | hypothetical protein ARALYDRAFT_481680 [ | 0.200 | 0.131 | 0.743 | 0.0 | |
| 13603721 | 3574 | putative chromatin remodeling protein SY | 0.223 | 0.141 | 0.666 | 0.0 | |
| 20197603 | 3571 | putative SNF2 subfamily transcription re | 0.223 | 0.141 | 0.666 | 0.0 | |
| 30683830 | 3574 | ATPase splayed [Arabidopsis thaliana] gi | 0.223 | 0.141 | 0.666 | 0.0 | |
| 60499608 | 3543 | SPLAYED splice variant [Arabidopsis thal | 0.223 | 0.142 | 0.666 | 0.0 |
| >gi|255551623|ref|XP_002516857.1| conserved hypothetical protein [Ricinus communis] gi|223543945|gb|EEF45471.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/1161 (51%), Positives = 715/1161 (61%), Gaps = 180/1161 (15%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MKRVEENLGSIGNSK RSVHNSVMELRNICNHPYLSQLH +EVD LIPKH+LPPI+RLCG
Sbjct: 1258 MKRVEENLGSIGNSKARSVHNSVMELRNICNHPYLSQLHVDEVDNLIPKHFLPPIIRLCG 1317
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KLEMLDR+LPKLKATDHRVLFFSTMTRLLDVME+YLT K+YRYLRLDGHTSG +RGALI+
Sbjct: 1318 KLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLTMKKYRYLRLDGHTSGNERGALIE 1377
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
+FN+ +SP+FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL
Sbjct: 1378 QFNKSNSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1437
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAA 240
VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAA
Sbjct: 1438 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAA 1497
Query: 241 PVLDDDALNDLLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDG-EPLPPLPSRLV 299
PVLDDDALND+LARSESEIDVFESVDKQRRE+E ATW L+ G G D LPPLPSRLV
Sbjct: 1498 PVLDDDALNDILARSESEIDVFESVDKQRREDERATWNSLLLGHGMDVPGLLPPLPSRLV 1557
Query: 300 TDDDLKALYEAMKIYDAPKTGVSPN--VGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQ 357
TDDDLK+ YE MK+YD PKTG + N VGVKRKG+ +G LDTQHYGRGKRAREVRSYEEQ
Sbjct: 1558 TDDDLKSFYEVMKLYDVPKTGPASNIGVGVKRKGQSVGGLDTQHYGRGKRAREVRSYEEQ 1617
Query: 358 WTEEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTE---------------P 402
WTEEEFEKMCQ +S +SP +KEE E++LP S A+ TE P
Sbjct: 1618 WTEEEFEKMCQVDSPESPSMKEEITERNLPKDDSVPVVAICVTEAQAPLPPLPPPQAMEP 1677
Query: 403 PAPLLPPPPPSLDPPQLQQSKEVTPPSK--RGRGRPRRADKSPVPVVLPAPSGTVKVEKD 460
P + PPP +++PP LQQSKEVTPPSK RGR R +DKSP VV PA SG K +
Sbjct: 1678 PPQAMEPPPQAVEPPPLQQSKEVTPPSKRGRGRPRRTTSDKSPTAVVHPASSGNGKADSG 1737
Query: 461 AMTGQSTSASASL-PGSTTVS--GVSG-SAQHVMVGIAPSSQPTTAFVPVAPGSQSASAC 516
G S S P S++ S GV+ +A +GIAP S+PTT V V P SQS +A
Sbjct: 1738 LQKGIELIPSKSFVPDSSSGSDIGVTNIAAPQASIGIAPCSEPTTPSVSVTPSSQSTAAS 1797
Query: 517 PSTP------------------------------------------------MQPKGRGR 528
TP +Q +GRGR
Sbjct: 1798 VVTPGLQSNSASVVTPGSQSTSASVVTPGFLSNSASVITPGVQSAPAGSPVLIQSRGRGR 1857
Query: 529 RIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVS 588
+ QSG Q PRRRGKK +LPA + P P N+Q S+N + T G VS
Sbjct: 1858 KAQSGVQAPRRRGKKQEAILPAPQN---LAVPAPSINDQSHDTSVNQL---VSVTSGTVS 1911
Query: 589 SIPTAPVPDSVSPSAVKGQSGTIDPSSAVAALNSELNTNLATAPPVP------QPSPQFS 642
S+P A S+S + + SGT + S V AL+S+ +APP+ Q S
Sbjct: 1912 SVPMAHCQSSLSAATTELTSGTTN-SEPVIALDSK------SAPPISSNSTTVQCSAPCP 1964
Query: 643 SVSMQTKGQSRKTQS--GGVTPRRRGKRQALGSPPISDVSAG---PESKSNLQSENNSGG 697
S Q KGQ RKTQS G TPRRRG++QA+ SP D + ++SE SG
Sbjct: 1965 SAPTQMKGQGRKTQSGAGAGTPRRRGRKQAMISPVYPDALVSQVISDKLLQMKSEEPSGS 2024
Query: 698 LRLSKSVSMGKQDALSQELSNKIQVQPCGVATSADVAGPDQKPAEQSVRVVQSNQPINLP 757
+V M Q+ ++ + + + S +G D+K A+Q V Q+ QPI
Sbjct: 2025 ---KATVVMSSQE------THGCEQKDIDLDKSTKFSGQDKKSAKQLDDVAQTRQPIC-- 2073
Query: 758 ATHDSSSQPSGSTPAQVPSMDLGNVASDTKEVLSENSSSKG--------GVIPIL--ALS 807
SS+ G++P Q+ S D+ + AS T E +ENS SK G I +L ++
Sbjct: 2074 ----SSAMNIGTSPGQILSADMRDAASLTMEFSAENSPSKAKVGEQGNVGSISLLTPTIT 2129
Query: 808 NMKAVERVNIQSFEEKACTNASKSKATLPALDSITEPYTGSTNTEGISNTIHHVPGAVAA 867
N + E V Q E+KAC PA+ E + GS EG + ++ V + +
Sbjct: 2130 NT-STEVVLSQCSEDKAC----------PAVGHPRESFPGSAAVEGSAKSVPQVAVEITS 2178
Query: 868 RTPSIST--SAPAASLSIPPQASVSVPVKRHGRKTPTTGEAPRRRGKKQGSGPSIPDGSA 925
+ I++ S +S SI P+A + VKR GRKT EAP+ RGKKQ + D A
Sbjct: 2179 SSQPIASCPSVSPSSQSILPEA---IQVKRQGRKTLNRAEAPKHRGKKQVPVSTAVDALA 2235
Query: 926 VFDAKLNQHSQNKSRDSFGSKTISLRSKQ------------------------------- 954
D+++N S NKSRD G +T+SLRS+Q
Sbjct: 2236 GQDSEINSQSHNKSRDLSGRRTMSLRSRQDSDLKEAAHIVQEVCLPSSLVGQDPKRKETT 2295
Query: 955 --------ETADVNDVARVMKEIFSETCSSKAKTGDSSLNEGKDASIRALSSSSAIAEVA 1006
+TADV DVARVMKEIFSETC+SK+K G+S NEG SI L S + + EV
Sbjct: 2296 GIPAFSRIQTADVTDVARVMKEIFSETCTSKSKMGESFRNEGTSTSITPLLSKTHV-EVV 2354
Query: 1007 KKQSSDDKTCSVTPTVETPPP 1027
K Q ++K S T+E P P
Sbjct: 2355 KNQRLEEKLPS---TLEAPIP 2372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478579|ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|355510630|gb|AES91772.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357478577|ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|355510629|gb|AES91771.1| Helicase swr1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449433367|ref|XP_004134469.1| PREDICTED: uncharacterized protein LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449495482|ref|XP_004159854.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206586, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297826111|ref|XP_002880938.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp. lyrata] gi|297326777|gb|EFH57197.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|13603721|gb|AAK31908.1|AF247809_1 putative chromatin remodeling protein SYD [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|20197603|gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|30683830|ref|NP_850116.1| ATPase splayed [Arabidopsis thaliana] gi|330253006|gb|AEC08100.1| ATPase splayed [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|60499608|gb|AAX22009.1| SPLAYED splice variant [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2260 | ||||||
| TAIR|locus:2062840 | 3574 | SYD "SPLAYED" [Arabidopsis tha | 0.330 | 0.209 | 0.491 | 2e-180 | |
| UNIPROTKB|F1S594 | 866 | LOC100622433 "Uncharacterized | 0.124 | 0.325 | 0.46 | 3.6e-61 | |
| UNIPROTKB|E1C2F7 | 1546 | E1C2F7 "Uncharacterized protei | 0.159 | 0.233 | 0.413 | 4.9e-59 | |
| MGI|MGI:99603 | 1577 | Smarca2 "SWI/SNF related, matr | 0.159 | 0.228 | 0.407 | 2.3e-58 | |
| RGD|1302988 | 1597 | Smarca2 "SWI/SNF related, matr | 0.159 | 0.226 | 0.407 | 4e-58 | |
| UNIPROTKB|E9PTG1 | 1597 | Smarca2 "Protein Smarca2" [Rat | 0.159 | 0.226 | 0.407 | 4e-58 | |
| UNIPROTKB|A5PKK5 | 1554 | SMARCA2 "SMARCA2 protein" [Bos | 0.159 | 0.232 | 0.407 | 9.4e-58 | |
| UNIPROTKB|E2RKP4 | 1556 | SMARCA2 "Uncharacterized prote | 0.159 | 0.232 | 0.407 | 9.5e-58 | |
| UNIPROTKB|F1SJG5 | 1556 | SMARCA2 "Uncharacterized prote | 0.159 | 0.232 | 0.407 | 9.5e-58 | |
| UNIPROTKB|P51531 | 1590 | SMARCA2 "Probable global trans | 0.159 | 0.227 | 0.407 | 1e-57 |
| TAIR|locus:2062840 SYD "SPLAYED" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1605 (570.0 bits), Expect = 2.0e-180, Sum P(5) = 2.0e-180
Identities = 389/791 (49%), Positives = 472/791 (59%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 60
MKRVE+NLGSIGN+K R+VHNSVMELRNICNHPYLSQLH+EEV+ +IPKH+LPPIVRLCG
Sbjct: 1014 MKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCG 1073
Query: 61 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 120
KLEMLDR+LPKLKATDHRVLFFSTMTRLLDVMEDYLT K Y+YLRLDG TSGGDRGALID
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133
Query: 121 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 180
FN+ SPFFIFLLSIRAGGVGVNLQAADTVI+FDTDWNPQVDLQAQARAHRIGQK+DVL
Sbjct: 1134 GFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVL 1193
Query: 181 VLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEXX 240
VLRFETV +VEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR+EYLESLLRE KKEE
Sbjct: 1194 VLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDA 1253
Query: 241 XXXXXXXXXXXXXRSESEIDVFESVDKQRREEEMATWRKLIRGLGTDG-EPLPPLPSRLV 299
R ESEID+FES+DKQR+E EM TW L+ G G+D +P +PSRLV
Sbjct: 1254 PVLDDDALNDLIARRESEIDIFESIDKQRKENEMETWNTLVHGPGSDSFAHIPSIPSRLV 1313
Query: 300 TDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWT 359
T+DDLK LYE MK+ D P VG+KRK +G LDT YGRGKRAREVRSYEE+ T
Sbjct: 1314 TEDDLKLLYETMKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLT 1373
Query: 360 EEEFEKMCQAESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEXXXXXXXXXXXXXXXXX- 418
EEEFEK+CQ ES DSP+ K EG E+SL +S+ P S++
Sbjct: 1374 EEEFEKLCQTESPDSPQGKGEGSERSLAND-TSNIPVENSSDTLLPTSPTQAITVQPMEP 1432
Query: 419 ----XXXSKEVTPPSKXXXXXXXXADKSPVPVVLPAPSGTVKVEKDAMTGQSTSASASLP 474
KE T P K DK+ PV L A S T TG + S++A+
Sbjct: 1433 VRPQSHTLKEETQPIKRGRGRPKRTDKALTPVSLSAVSRT------QATGNAISSAATGL 1486
Query: 475 XXXXXXXXXXXAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPS-TPMQPKGRGRRIQSG 533
A H +A +S + P PG QS A P+ TP++ +GRGR G
Sbjct: 1487 DFVSSDKRLEAASHPTSSLALTSPDLSG--P--PGFQSLPASPAPTPIRGRGRGRSRGRG 1542
Query: 534 EQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTA 593
RG+++ VL ++ I + + T+ +E+ + S + VS +P A
Sbjct: 1543 AG----RGRRVEGVLHGSNSSI-TQRTETATSLASDAEATKFALPRSASEI--VSRVPKA 1595
Query: 594 PVPDSVSPSAVKG-QSGTIDPSSAVAALNSELNTNLATAXXXXXXXXXXXXXXMQTKGQS 652
+ +P V S T S AA + +L+ + K +
Sbjct: 1596 NEGSTSNPDQVSPVHSATTALRSDKAA-DKDLDAPPGFDSGSHVQTLNVLENSSERKAFA 1654
Query: 653 RKTQS--GGVTPRRRG-KRQALGSPPISD---VSAGPESKSNLQSENNSGGLRLSKSVSM 706
K + GV+ + G +Q L P + + GP N S G SKS S
Sbjct: 1655 VKKRPLIQGVSSQHPGPNKQPLDLPVSTSSTLLGGGPVQNQNAVSSVCDG----SKSPSE 1710
Query: 707 GKQDALSQELSNKIQVQPCGVATS-ADVAGP-DQKPAEQSVRVVQSNQP---INLPATHD 761
G+ Q ++ +++ +D P +P +V ++N P LPA
Sbjct: 1711 GRTYTALQGVTTAPSDATLPMSSQPSDATLPMSSQPVGSTVEAQEANVPSLPAALPAKRR 1770
Query: 762 SSSQPS-GSTP 771
+ PS G TP
Sbjct: 1771 VRNLPSRGETP 1781
|
|
| UNIPROTKB|F1S594 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C2F7 E1C2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:99603 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1302988 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PTG1 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A5PKK5 SMARCA2 "SMARCA2 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RKP4 SMARCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SJG5 SMARCA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P51531 SMARCA2 "Probable global transcription activator SNF2L2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2260 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 2e-61 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 6e-41 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 4e-28 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 6e-21 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 6e-21 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 6e-04 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 2e-61
Identities = 104/182 (57%), Positives = 127/182 (69%), Gaps = 4/182 (2%)
Query: 21 NSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVL 80
N M+LR CNHPYL Q AE +L V GK+ +LD+LLPKLK D RVL
Sbjct: 436 NIAMQLRKCCNHPYLFQ-GAEPGPPYTTGEHL---VENSGKMVLLDKLLPKLKERDSRVL 491
Query: 81 FFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 140
FS MTRLLD++EDYL ++ Y+Y R+DG+T G DR A ID FN+ S F+FLLS RAGG
Sbjct: 492 IFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551
Query: 141 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 200
+G+NL AD VI++D+DWNPQVDLQAQ RAHRIGQK++V V RF T T+EE+V A
Sbjct: 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611
Query: 201 KL 202
KL
Sbjct: 612 KL 613
|
Length = 1033 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2260 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.97 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.97 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.97 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.95 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.95 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.95 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.9 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.83 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 99.83 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.79 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.72 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.7 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 99.63 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.6 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.58 | |
| PTZ00110 | 545 | helicase; Provisional | 99.57 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.54 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.53 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.5 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.5 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.5 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.48 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.48 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.48 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.47 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.47 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.46 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.45 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.42 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.41 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.4 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.38 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.35 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.34 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.33 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.33 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.32 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.28 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.27 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.27 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.25 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.24 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.24 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.22 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.2 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.2 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.2 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.16 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.12 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.12 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.11 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.09 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.08 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.06 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.06 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.05 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.04 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.02 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.0 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.99 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 98.89 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 98.85 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 98.84 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.83 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.82 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 98.82 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.82 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 98.81 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 98.8 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.8 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.78 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.76 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 98.75 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 98.71 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.68 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.66 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 98.66 | |
| PF14619 | 74 | SnAC: Snf2-ATP coupling, chromatin remodelling com | 98.65 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 98.62 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 98.62 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 98.59 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 98.58 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.56 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.52 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.51 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 98.46 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.41 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.31 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 98.31 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 98.3 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.28 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.28 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.23 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.16 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 98.13 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.01 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.96 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.95 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.93 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.88 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 97.86 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.76 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 97.63 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.6 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.51 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.48 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 97.45 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.42 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.4 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 97.3 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.27 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 97.13 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.03 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 96.79 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 96.72 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.64 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 96.39 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 96.19 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 96.05 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 96.04 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 95.9 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 95.78 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.32 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 95.27 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 95.04 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 94.57 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 93.95 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 93.89 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 93.33 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 92.14 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 91.92 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.87 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 91.74 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 91.38 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 91.11 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 91.09 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 90.08 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 89.78 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 89.63 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 89.31 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 89.27 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 88.83 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 88.65 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 88.6 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 87.23 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 86.97 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 86.39 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 85.46 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 84.76 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 84.76 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 84.42 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.27 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 83.0 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 80.65 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=547.64 Aligned_cols=328 Identities=49% Similarity=0.788 Sum_probs=285.7
Q ss_pred CCCchhhHHHHHHHHHHHhcCCcccccccccccccCCcccc-ccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHH
Q 000096 12 GNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLD 90 (2260)
Q Consensus 12 GnsKgRSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l-~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLD 90 (2260)
++...++|+|.+|+|||||||||+|........ .++. ..||+.||||++|+++|.+|++.|||||+|+||+.+++
T Consensus 665 g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~----~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmd 740 (1157)
T KOG0386|consen 665 GKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT----LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMD 740 (1157)
T ss_pred ccccchhhhhHhHHHHHhcCCchhhhhhccccc----cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHH
Confidence 567778999999999999999999953333222 2222 58999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccc
Q 000096 91 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 170 (2260)
Q Consensus 91 ILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRA 170 (2260)
+|++||.+++|+|+|+||.|+.++|..+++.||.++++||+||++|++||+|||||.||+||+||.+|||+.++||.+|+
T Consensus 741 imEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 741 ILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred HHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCCccCCCCCHHHHHHHHHHHHHHhhhcccCCCCCHHHHHH
Q 000096 171 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALND 250 (2260)
Q Consensus 171 HRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG~FDnksSaEErrELLESLLre~kkEEeaeVLDDEELNE 250 (2260)
|||||+++|+|+||++.+++||+|+..+.+|++++.++|++|.|+++.+.++++.+|+.+++....+++.++.++++||+
T Consensus 821 hrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~ 900 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNS 900 (1157)
T ss_pred HHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877767788899999999
Q ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCchhHHHHHHHHhccccCCCCCCCCCcccccc
Q 000096 251 LLARSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRK 330 (2260)
Q Consensus 251 LLARSEeELdlFqsLDkERrEeEle~W~kllrg~g~~gE~~PelPsRLi~ddELp~lye~~ei~e~p~~~v~~n~~~krk 330 (2260)
+|+|+++|+++|.+||.++++.+... ....||+.+.+++++.-+... +..+.
T Consensus 901 ~larseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~i~~~~~------------~~~~~ 952 (1157)
T KOG0386|consen 901 MLARSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPADIYKRDQ------------GVERL 952 (1157)
T ss_pred HHhcchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHHHHhcch------------hhhhh
Confidence 99999999999999999886544211 114588988998854433211 11111
Q ss_pred ccccCCcccccccCCccccccccccCCCCHHHHHHHHhcCCCC
Q 000096 331 GEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSD 373 (2260)
Q Consensus 331 ~e~~~~~d~q~yGRG~R~Rk~V~Y~DglTEeQwlK~~~~eseD 373 (2260)
.+. ......+|||+|+|+.|+|+|.|||+||++.++.+..+
T Consensus 953 ~~~--~~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~ 993 (1157)
T KOG0386|consen 953 SEE--EEEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKE 993 (1157)
T ss_pred hhh--hhhhccccccccccceeecccccchhhhhhhccccccc
Confidence 110 11223379999999999999999999999988876544
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2260 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 5e-44 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 7e-27 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 6e-14 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 8e-14 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 1e-13 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 356 bits (915), Expect = e-105
Identities = 108/284 (38%), Positives = 148/284 (52%), Gaps = 14/284 (4%)
Query: 6 ENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT------LIPKHYLPPIVRLC 59
L + S+ N + EL+ NHPYL E V + ++ L ++
Sbjct: 496 SALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSS 555
Query: 60 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALI 119
GK+ +LD+LL +LK HRVL FS M R+LD++ DYL+ K + RLDG R I
Sbjct: 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISI 615
Query: 120 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 179
D FN DS F+FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V
Sbjct: 616 DHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675
Query: 180 LVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSA---EDRREYLESLLRE--- 233
+V R + TVEE+V A K+ + I+ G D N E L ++L+
Sbjct: 676 MVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAG 735
Query: 234 --CKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRREEEMA 275
+ L+D L+D+L +E + + + EE
Sbjct: 736 NMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFL 779
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2260 | |||
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.98 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.96 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.89 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.81 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.76 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.76 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.76 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.75 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.74 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.74 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.74 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.73 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.71 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.7 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.69 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.69 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.5 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.67 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.62 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.61 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.61 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.6 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.59 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.59 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.59 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.59 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.57 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.54 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.54 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.54 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.51 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.5 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.41 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.4 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.39 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.39 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.36 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.34 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.33 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.29 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.28 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.27 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.12 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.05 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.04 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.04 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.03 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.02 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.02 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 98.98 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 98.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 98.94 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 98.93 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 98.93 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 98.92 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 98.88 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 98.88 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 98.87 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 98.87 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 98.84 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 98.82 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 98.79 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.78 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 98.72 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 98.63 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 97.97 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 97.87 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 97.7 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 96.15 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 94.59 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 90.13 |
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=327.42 Aligned_cols=182 Identities=28% Similarity=0.461 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHhcCCcccccccccccccCCccccccccccccHHHHHHHHHHHhhcCCCeEEEEEcchhHHHHHHHHH
Q 000096 17 RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 96 (2260)
Q Consensus 17 RSLfNiLMQLRKICNHPYLfqlSeEEVd~LlPe~~l~~LIRsSGKLELLdrLLkKLkenGhKVLIFSQfTdtLDILED~L 96 (2260)
..+++.+++|||+||||+++... ..++..++|+..|.++|..+...++|+||||+|+.++++|..+|
T Consensus 66 ~~~l~~l~~Lrq~~~hP~l~~~~-------------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L 132 (271)
T 1z5z_A 66 GMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 132 (271)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHhcCC-------------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHH
Confidence 46899999999999999998511 12456799999999999999888999999999999999999999
Q ss_pred hhc-CceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhhhcccccccCC
Q 000096 97 TFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 175 (2260)
Q Consensus 97 rkr-GIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQAIGRAHRIGQ 175 (2260)
... |+.+.+|+|+++..+|++++++|+.+. .++|||++|+++|+||||+.|++||+||+||||..+.||+||+||+||
T Consensus 133 ~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq 211 (271)
T 1z5z_A 133 EKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQ 211 (271)
T ss_dssp HHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC------------
T ss_pred HHhcCCcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCC
Confidence 885 999999999999999999999998753 356899999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 176 KRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 176 KKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
+++|+||+|++.+|+||+|++++..|..+++.+++.+
T Consensus 212 ~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 212 TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 248 (271)
T ss_dssp --CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred CCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999865
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2260 | ||||
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 6e-37 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-25 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-18 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 5e-12 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 2e-04 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 141 bits (356), Expect = 6e-37
Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 28/295 (9%)
Query: 1 MKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL-------SQLHAEEVDTLIPKHYLP 53
+K+ + S +S+ L+ +CNHP L + + L P++Y
Sbjct: 33 LKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYST 92
Query: 54 P--IVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT 110
+L GK+ +LD +L + T +V+ S T+ LD+ E ++Y Y+RLDG
Sbjct: 93 KAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 152
Query: 111 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 170
S R ++++FN SP FIF+LS +AGG G+NL A+ +++FD DWNP D QA AR
Sbjct: 153 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 212
Query: 171 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESL 230
R GQK+ + R + T+EE++ HK +++ + + L L
Sbjct: 213 WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE---QDVERHFSLGELREL 269
Query: 231 LRECKKEEAAPVLDDDAL---NDLL--ARSESEIDVFESVDKQRREEEMATWRKL 280
L++ L +D R + V D +++ W
Sbjct: 270 FS----------LNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHC 314
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2260 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.82 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.82 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.8 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.8 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.79 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.79 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.77 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.73 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.66 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.57 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.49 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.19 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.19 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.05 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.85 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.72 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.4 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.39 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.02 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.92 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.84 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=5.1e-39 Score=361.78 Aligned_cols=197 Identities=35% Similarity=0.591 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHHHhcCCccccccccc-------ccccCCccc--cccccccccHHHHHHHHHHHhh-cCCCeEEEEEcc
Q 000096 16 GRSVHNSVMELRNICNHPYLSQLHAEE-------VDTLIPKHY--LPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTM 85 (2260)
Q Consensus 16 gRSLfNiLMQLRKICNHPYLfqlSeEE-------Vd~LlPe~~--l~~LIRsSGKLELLdrLLkKLk-enGhKVLIFSQf 85 (2260)
...+++.+++||||||||+|+...... .....+..+ .......|+|+.+|.+||..+. ..++||||||+|
T Consensus 48 ~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~ 127 (346)
T d1z3ix1 48 SVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY 127 (346)
T ss_dssp CHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred hHHHHHHHHHHHHHhCCHHHhhhhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeeh
Confidence 457999999999999999997432111 111111111 2234567999999999998875 678999999999
Q ss_pred hhHHHHHHHHHhhcCceEEEEeCCCCHHHHHHHHHHhhCCCCCeEEEEEcccccccccCCCccCeeEeeCCCCChhhhhh
Q 000096 86 TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ 165 (2260)
Q Consensus 86 TdtLDILED~LrkrGIkyvRLDGSTSqEERQeIIDrFNk~DSei~VLLLSTRAGGeGLNLQaADhVIIFDpPWNParDLQ 165 (2260)
+.++++|+++|..+|+.|++|+|.++..+|..++++||.+....+|||+++++||+||||+.|++||+||++|||..+.|
T Consensus 128 ~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Q 207 (346)
T d1z3ix1 128 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQ 207 (346)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHH
T ss_pred hhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhH
Confidence 99999999999999999999999999999999999999887778899999999999999999999999999999999999
Q ss_pred hcccccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 000096 166 AQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 212 (2260)
Q Consensus 166 AIGRAHRIGQKKEVrVYRLITegTVEEKIyERArrKLdLAekVIqaG 212 (2260)
|+||+||+||+++|+||||++.+||||+||+++..|+.+++.+++.+
T Consensus 208 a~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~ 254 (346)
T d1z3ix1 208 AMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 254 (346)
T ss_dssp HHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred hhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999765
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|