Citrus Sinensis ID: 000107
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2191 | 2.2.26 [Sep-21-2011] | |||||||
| O75417 | 2590 | DNA polymerase theta OS=H | yes | no | 0.335 | 0.284 | 0.400 | 1e-168 | |
| Q8TDG4 | 1101 | Helicase POLQ-like OS=Hom | no | no | 0.330 | 0.658 | 0.347 | 1e-123 | |
| Q2VPA6 | 1069 | Helicase POLQ-like OS=Mus | no | no | 0.329 | 0.676 | 0.351 | 1e-121 | |
| Q7Z5Q5 | 900 | DNA polymerase nu OS=Homo | no | no | 0.230 | 0.56 | 0.307 | 4e-64 | |
| P43741 | 930 | DNA polymerase I OS=Haemo | yes | no | 0.217 | 0.511 | 0.320 | 2e-62 | |
| Q7TQ07 | 864 | DNA polymerase nu OS=Mus | no | no | 0.224 | 0.568 | 0.311 | 5e-62 | |
| Q04957 | 877 | DNA polymerase I OS=Bacil | N/A | no | 0.194 | 0.485 | 0.357 | 1e-61 | |
| P52026 | 876 | DNA polymerase I OS=Geoba | N/A | no | 0.194 | 0.486 | 0.354 | 2e-60 | |
| O52225 | 833 | DNA polymerase I, thermos | N/A | no | 0.184 | 0.484 | 0.358 | 3e-57 | |
| O34996 | 880 | DNA polymerase I OS=Bacil | yes | no | 0.219 | 0.546 | 0.301 | 1e-56 |
| >sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 324/809 (40%), Positives = 477/809 (58%), Gaps = 73/809 (9%)
Query: 493 PSSSGMLKDCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTS 551
P+ +D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TS
Sbjct: 59 PTVPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTS 118
Query: 552 AGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611
AGK+ VAE+L+L+R++ K AL +LP+VS+ EK +L+ L + +G V Y G+
Sbjct: 119 AGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPS 178
Query: 612 SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671
+AVCTIE+AN L+NR++EE ++ +G++V+DELHM+ D +RGYLLELLLTK+
Sbjct: 179 RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKIC 238
Query: 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPV 731
Y T S+S + SS ++ +QIVGMSAT+PN+ VA WL A LY T+FRPV
Sbjct: 239 YI----TRKSASCQADLASS----LSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPV 290
Query: 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKG 791
PL E +KVGN+IY M +VR + G D DH+V LC E + + HSVL+FC S+K
Sbjct: 291 PLLESVKVGNSIYDSSMKLVREFEPMLQVKG-DEDHVVSLCYETICDNHSVLLFCPSKKW 349
Query: 792 CESTARHVSKFLKKFSINVHSSDSEFI-------------DITSAIDALRRCPAGLDPVL 838
CE A +++ N+H + ++ +D LRR P+GLD VL
Sbjct: 350 CEKLADIIAREF----YNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVL 405
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG 898
++T+P GVA+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G
Sbjct: 406 QKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFG 465
Query: 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----- 953
+D Y+QM GRAGR G+DT GES+LICK E K + LL S P+ SCL
Sbjct: 466 GRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGE 525
Query: 954 EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL-NSTKPFQDVVKSAQDSLR------- 1005
E M AILE++ GG+ T++D+H Y CT L S K + ++ Q+S++
Sbjct: 526 EVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEAC 585
Query: 1006 --WLCHRKFLEWNE-----DTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLA 1058
WL +F++ E + K+Y T LG A SSL P ++L + DL RA +GFVL
Sbjct: 586 VMWLLENEFIQSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLE 645
Query: 1059 SDLHLVYLSTPINVE-VEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRI 1117
+DLH++YL TP+ + DW ++ + +L + V VGV E +L R G
Sbjct: 646 NDLHILYLVTPMFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKG----- 700
Query: 1118 SSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCET 1177
K+ T+ H + + + KRF+ +L+L L+ E P+ E+ +
Sbjct: 701 --KVVARTERQH------------------RQMAIHKRFFTSLVLLDLISEVPLREINQK 740
Query: 1178 FKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIP 1237
+ RG +Q+LQ++A +A M++VF RLGW+++E L+++FQ R++FG++ E+ +L +
Sbjct: 741 YGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVS 800
Query: 1238 YVKGSRARALYKAGLRTPLAIAEASISEI 1266
+ RAR LY +G T +A A+I E+
Sbjct: 801 LLNAQRARVLYASGFHTVADLARANIVEV 829
|
Has a DNA polymerase activity on nicked double-stranded DNA and on a singly primed DNA template. The enzyme activity is resistant to aphidicolin, and inhibited by dideoxynucleotides. Exhibites a single-stranded DNA-dependent ATPase activity. Could be involved in the repair of interstrand cross-links. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 288/828 (34%), Positives = 443/828 (53%), Gaps = 103/828 (12%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 319 LPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 378
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 379 CCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATI 438
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG LE+ L K+ Y TS ++
Sbjct: 439 EKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILY-----TSKTT-- 491
Query: 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY 744
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ + IY
Sbjct: 492 ----------------QIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIY 535
Query: 745 S------KKMDVVRTI--LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTA 796
M R + + L DPDH+V L EV+ +S L+FC S+K CE+ A
Sbjct: 536 EVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIP-NYSCLVFCPSKKNCENVA 594
Query: 797 RHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTV 855
+ KFL K + + I L+ G L PVL+ T+P GVAYHH+GLT
Sbjct: 595 EMICKFLSKEYLKHKEKEK-----CEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTS 649
Query: 856 EEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAG 915
+ER+++E Y G++ + T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAG
Sbjct: 650 DERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAG 709
Query: 916 RTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGI 971
R GIDT GES+LI + ++ ++++ L+ + PL +C S E G+ L ++ I
Sbjct: 710 RAGIDTIGESILILQEKDKQQVLELITK---PLENCYSHLVQEFTKGIQTLFLSLIGLKI 766
Query: 972 VQTAEDIHRYVRCTLLNSTKPFQDVVKS----AQDSLRWLCHRKFLEWN------EDTKL 1021
+DI+ ++ T + KS +SLR+L + L+ + E+ +
Sbjct: 767 ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQY 826
Query: 1022 -YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDW 1078
+ T LGRA+F ++ I+ DL + EG VL S LHL+YL+TP ++ + PDW
Sbjct: 827 NFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDW 886
Query: 1079 ELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGI 1138
+Y+ +F +LS +Q+V +GVSE ++ + A G + GK +
Sbjct: 887 MIYFRQFSQLSPAEQNVAAILGVSESFIGKKASGQAI--------------GK-----KV 927
Query: 1139 TSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASM 1198
N V R Y++ +L L++ET + V E F + RG +Q L F+S
Sbjct: 928 DKN----------VVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSC 977
Query: 1199 VSVFCERL-GWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLA 1257
V FCE L ++ L+ + ++++ V+AE++ L + V RA+ LY AG ++ +
Sbjct: 978 VLHFCEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMH 1037
Query: 1258 IAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
+A A+ +V+ I RR AK+I + A+ ++ EKAE
Sbjct: 1038 LANANPEVLVRT-------IDHLSRR----QAKQIVSSAKMLLHEKAE 1074
|
DNA-dependent ATPase and 5' to 3' DNA helicase. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 291/829 (35%), Positives = 446/829 (53%), Gaps = 106/829 (12%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL + V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 278 LPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKNLIYSLPTSGGKTLVAEILMLQELL 337
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-----KDTSVAVC 622
K L++LPYV+I EK L LG V Y G++G P + S+ +
Sbjct: 338 CRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKG--RFPPIKRREKKSLYIA 395
Query: 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682
TIEKA+SLVN ++E RLS +G++V+DELHM+ + +RG +LE+ L K+ Y TS ++
Sbjct: 396 TIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLY-----TSKTT 450
Query: 683 SGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742
QI+GMSAT+ NV + +L+A Y + FRPV L+E++KV +
Sbjct: 451 ------------------QIIGMSATLNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDT 492
Query: 743 IY------SKKMDVVRTI--LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCES 794
IY + M R + + L DPD +V L EV+ +S L+FC S+K CE+
Sbjct: 493 IYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIP-NYSCLVFCPSKKNCEN 551
Query: 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGL 853
A + KFL K +N + I +LR G + PVL+ T+P G+AYHH+GL
Sbjct: 552 VAEMLCKFLSKDYLNHREKEK-----CEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGL 606
Query: 854 TVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGR 913
T EER+++E Y G++ +LT TSTLAAGVNLPARRVI R P + F+ +Y+QM GR
Sbjct: 607 TSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQMVGR 666
Query: 914 AGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAG 969
AGR GIDT GES+L+ + ++ ++++ L++ PL +C S E G+ L ++
Sbjct: 667 AGRAGIDTAGESILLLQEKDKQQVLELIS---GPLETCCSHLVEEFTKGIQALFLSLIGL 723
Query: 970 GIVQTAEDIHRYVRCTLLNSTKPFQDVVKS----AQDSLRWLCHRKFLEW-----NEDTK 1020
I + DI++++ T + KS D+L L + L+ NE +
Sbjct: 724 KIAASLGDIYQFMSGTFFGVQQKILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLE 783
Query: 1021 L-YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPD 1077
+ T LG+A+F ++ + DL + EG VL S LHL+YL+TP ++ + EPD
Sbjct: 784 CHFRITKLGQASFKGAIDLAYCDTLYRDLKKGLEGLVLESLLHLIYLTTPYDLAAQSEPD 843
Query: 1078 WELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLG 1137
W +Y+++F +LS +Q+V +GVSE ++ + A G +R K D
Sbjct: 844 WMVYFKQFGQLSPTEQNVAALLGVSESFIGKKAAGQAVR---KKVDKN------------ 888
Query: 1138 ITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFAS 1197
V R Y++ +L L++ET V V E F + RG +Q L A F+S
Sbjct: 889 --------------VVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSS 934
Query: 1198 MVSVFCERL-GWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPL 1256
V FCE L ++ + L+ + ++++ V+AE++ L + V RA+ LY AG R+ +
Sbjct: 935 CVLHFCEELEEFWVYKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIM 994
Query: 1257 AIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
+A A+ +VK I RR A++I + A+ ++ EKAE
Sbjct: 995 HLANANPEVLVKT-------IDHLSRR----QARQIVSSAKMLLHEKAE 1032
|
DNA-dependent ATPase and 5' to 3' DNA helicase. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 169/549 (30%), Positives = 285/549 (51%), Gaps = 45/549 (8%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D I +W++ P D + P+ E V+K N + + N R +
Sbjct: 340 HVADFIGLDPRIAAWLIDPSD---ATPSFEDLVEKYCEKSITVKVNST--YGNSSRNIVN 394
Query: 1706 NGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQAR 1765
+ L L L L + +E+PL+ +LA ME I V+ E +
Sbjct: 395 QNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTS 454
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKG-----KQHPST 1820
LL +L+ LE++A+ +AG +F + + + +L+G LKL + N +++PST
Sbjct: 455 ALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPST 514
Query: 1821 DKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880
+ L+ LR HP+ +I E+R + K+ + + + + + K ++ W QT T
Sbjct: 515 SEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMK------KGSISSTWNQTGTV 568
Query: 1881 TGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADY 1939
TGRLS + PN+Q + +H ++ + ++ G ++ I+ R F+ S+ + LAAD+
Sbjct: 569 TGRLSAKHPNIQGISKHPIQI-TTPKNFKGKEDKI--LTISPRAMFVSSKGH-TFLAADF 624
Query: 1940 SQIELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGI 1998
SQIELR++ H S DP L+ L + DVF+ + ++W + V +R+QTK+++Y +
Sbjct: 625 SQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAV 684
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
+YG G L+ L EA + ++SF + + + A++ CHQ G V S+ GR+R
Sbjct: 685 VYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRP 744
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
L +I + + +++A+RQAVN + QGSAAD+ K+AMI++ + + +L A
Sbjct: 745 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAAS-----HTLTA---- 795
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMES----AAL---LLVPLLVKIQVGS 2171
RL+ Q+HDEL+ EV+ I E +LV++ MES AL L VPL V + G
Sbjct: 796 -----RLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGR 850
Query: 2172 TWGSLEPFQ 2180
+WG L P Q
Sbjct: 851 SWGHLVPLQ 859
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=polA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 169/528 (32%), Positives = 266/528 (50%), Gaps = 52/528 (9%)
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMR------RAAHN 1706
D ++S+ L + N++ K+ L E A + +G+ K+Q+ A
Sbjct: 444 FDTMLLSYTL----NSTGRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQATE 499
Query: 1707 GCCRRVAQTRALCSVLW-KLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQAR 1765
T L LW KL L+E +E+PL++VL+ ME G+ +D +
Sbjct: 500 YAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQS 559
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL 1825
N + +L LEK+AY LAG F+L + + +L+ L+LP+ + KG PST++ L
Sbjct: 560 NEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLELPVLQKTPKGA--PSTNEEVL 617
Query: 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLS 1885
+ L + H + ++ +HR L+KL + + + +++Q +H + Q TATGRLS
Sbjct: 618 EELSYSHELPKILVKHRGLSKLKSTYTDKLPQM----VNSQTGRVHTSYHQAVTATGRLS 673
Query: 1886 MEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELR 1945
+PNLQ +I N E H R FI ++E + ++AADYSQIELR
Sbjct: 674 SSDPNLQ-------------NIPIRNEEGRHI----RQAFI-AREGYSIVAADYSQIELR 715
Query: 1946 LMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPN 2005
+MAH S D LI S+ D+ AA G S D V S++R K + +G++YGM
Sbjct: 716 IMAHLSGDQGLINAFSQGK-DIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF 774
Query: 2006 TLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFG 2065
LS QL S +A++ + + +P V ++ +GYVE+L GR+ +L I
Sbjct: 775 GLSRQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSS 834
Query: 2066 NNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRL 2125
N + A+R A+N+ QG+AADIIK AMI + +I + PD +
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVI---RHDPD-------------IEM 878
Query: 2126 LLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
++QVHDELV EV + +++ ME+AA L+VPL+V++ VG W
Sbjct: 879 IMQVHDELVFEVRSEKVAFFREQIKQHMEAAAELVVPLIVEVGVGQNW 926
|
In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 175/562 (31%), Positives = 284/562 (50%), Gaps = 71/562 (12%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D + +W++ P D + P+ E V K L + + R A+
Sbjct: 339 HVADFVGLDPRVAAWLIDPSD---TAPSFEDLVAKHLEKSITVKPSST------FREASR 389
Query: 1706 NGCCRRVAQ--------TRALCSVL-----WKLLVSEELIEALLNIEIPLVNVLADMELW 1752
N + V T LCS L W+L + +E+PL+ +LA ME
Sbjct: 390 NTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCT---------LELPLIPILAVMENH 440
Query: 1753 GIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812
I VD E + LL +L+ LE++A+ +AG +F + + + +L+G LKL +
Sbjct: 441 KIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRK 500
Query: 1813 ----KGKQHP-STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQK 1867
G Q+ ST + L+ L+ HP+ +I E+R + K+ + + + + + K
Sbjct: 501 HLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGLLAYMK------K 554
Query: 1868 YTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFI 1926
++ W QT T TGRLS + PN+Q + +H + K+S + G E + I+ R F+
Sbjct: 555 GSISSTWNQTGTVTGRLSAKHPNIQGISKHPI--KISKPWNFKGKEE-ETVTISPRTLFV 611
Query: 1927 PSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKP-HGDVFTMIAARWTGRSEDSVGS 1985
S E LAAD+SQIELR++AH S DP L+ L + DVF+ + ++W + V
Sbjct: 612 -SSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTH 670
Query: 1986 QERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQ 2045
+R+QTK+++Y ++YG G L+ L + EA ++ F + + + + CH
Sbjct: 671 MDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHS 730
Query: 2046 KGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGV 2105
GYV S+ GR+R L +I + + +++A+RQAVN + QGSAAD+ K+AMI I + +
Sbjct: 731 AGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATS- 789
Query: 2106 YKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA-------L 2158
+L A RL+ Q+HDEL+ EV+ + + E +LV++ MES
Sbjct: 790 ----PTLTA---------RLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQ 836
Query: 2159 LLVPLLVKIQVGSTWGSLEPFQ 2180
L VPL V + VG +WG L P Q
Sbjct: 837 LQVPLKVNLSVGRSWGHLTPLQ 858
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 240/467 (51%), Gaps = 41/467 (8%)
Query: 1708 CCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R+ A AL L E L+ +E PL ++LA+ME G+ VD + Q
Sbjct: 447 LVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGEE 506
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
L ++LR +E++ Y LAG +F++ + + +L+ L+LP+ K K ST L+
Sbjct: 507 LAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPV---LKKSKTGYSTSADVLEK 563
Query: 1828 LRHEHPIVPVIKEH-RTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L H IV I +H R L KL + + + + R T+K +H + Q T TGRLS
Sbjct: 564 LAPYHEIVENILQHYRQLGKLQSTYIEGLLKVVR--PDTKK--VHTIFNQALTQTGRLSS 619
Query: 1887 EEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRL 1946
EPNLQ + +E + KI R F+PS+ +W++ AADYSQIELR+
Sbjct: 620 TEPNLQNIPIRLE---------------EGRKI--RQAFVPSESDWLIFAADYSQIELRV 662
Query: 1947 MAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNT 2006
+AH ++D L+ + D+ T A SED V R Q K + +GI+YG+
Sbjct: 663 LAHIAEDDNLMEAFRR-DLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYG 721
Query: 2007 LSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGN 2066
L++ LN S EA E I+ + SFPGV ++ V QKGYV +L R+R+L I N
Sbjct: 722 LAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRN 781
Query: 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLL 2126
+S A+R A+N+ QGSAADIIK AMI+++ A + + + RLL
Sbjct: 782 FNVRSFAERMAMNTPIQGSAADIIKKAMIDLN---------------ARLKEERLQARLL 826
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
LQVHDEL+LE ++ LV + ME A L VPL V GSTW
Sbjct: 827 LQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTW 873
|
In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity. Bacillus caldotenax (taxid: 1395) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 237/466 (50%), Gaps = 40/466 (8%)
Query: 1708 CCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R+ A AL L L E L +E PL +LA+ME G+ VD + Q
Sbjct: 447 LVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAE 506
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
L ++L+ +E++ Y LAG +F++ + + VL+ L+LP+ K K ST L+
Sbjct: 507 LTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPV---LKKTKTGYSTSADVLEK 563
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
L H IV I +R L KL + + + + + T K +H + Q T TGRLS
Sbjct: 564 LAPHHEIVEHILHYRQLGKLQSTYIEGLLKV--VHPVTGK--VHTMFNQALTQTGRLSSV 619
Query: 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLM 1947
EPNLQ + +E + KI R F+PS+ +W++ AADYSQIELR++
Sbjct: 620 EPNLQNIPIRLE---------------EGRKI--RQAFVPSEPDWLIFAADYSQIELRVL 662
Query: 1948 AHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007
AH ++D LI + D+ T A SE+ V + R Q K + +GI+YG+ L
Sbjct: 663 AHIAEDDNLIEAFRRGL-DIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGL 721
Query: 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNN 2067
++ LN + EA E I+ + +SFPGV ++ V QKGYV +L R+R+L I N
Sbjct: 722 AQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNF 781
Query: 2068 KEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127
+S A+R A+N+ QGSAADIIK AMI+ L+ + + + RLLL
Sbjct: 782 NVRSFAERTAMNTPIQGSAADIIKKAMID---------------LSVRLREERLQARLLL 826
Query: 2128 QVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
QVHDEL+LE I+ LV + ME A L VPL V G TW
Sbjct: 827 QVHDELILEAPKEEIERLCRLVPEVMEQAVTLRVPLKVDYHYGPTW 872
|
In addition to polymerase activity, this DNA polymerase exhibits 5' to 3' exonuclease activity. Geobacillus stearothermophilus (taxid: 1422) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 240/449 (53%), Gaps = 45/449 (10%)
Query: 1727 VSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGM 1785
+SE+L+ +E PL VLA ME G+ +D+ L+A + L+K++ LE + + LAG
Sbjct: 422 LSEKLLWLYQEVERPLSRVLAHMEARGVRLDVP-LLEALSFELEKEMERLEGEVFRLAGH 480
Query: 1786 KFSLYTAADIANVLYGHLKL-PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTL 1844
F+L + + VL+ L L P+ GK+ ST + L+ LR HPIV +I ++R L
Sbjct: 481 PFNLNSRDQLERVLFDELGLTPVGRTEKTGKR--STAQGALEALRGAHPIVELILQYREL 538
Query: 1845 AKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN 1904
+KL + L + L + + LH + QT+TATGRLS +PNLQ + V +
Sbjct: 539 SKLKSTYLDPLPRL----VHPRTGRLHTRFNQTATATGRLSSSDPNLQNIP--VRTPLGQ 592
Query: 1905 EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPH 1964
R F+ ++E W+LLAADYSQIELR++AH S D L + +
Sbjct: 593 ---------------RIRKAFV-AEEGWLLLAADYSQIELRVLAHLSGDENLKRVFRE-G 635
Query: 1965 GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKS 2024
D+ T AA G V + R K + +G+LYGM + LS++L EA+ I+
Sbjct: 636 KDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIER 695
Query: 2025 FKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQG 2084
+ SFP V +W+ + +GYVE+L GR+R++ + + A+R A N QG
Sbjct: 696 YFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQG 755
Query: 2085 SAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKE 2144
+AAD++KIAM+ + + KP L A+ LLLQVHDELVLEV +E
Sbjct: 756 TAADLMKIAMVKLFPRL-----KP---LGAH---------LLLQVHDELVLEVPEDRAEE 798
Query: 2145 AVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
A +LV++ ME+A L VPL V++ VG W
Sbjct: 799 AKALVKEVMENAYPLDVPLEVEVGVGRDW 827
|
Has 5'-to-3' exonuclease activity and no 3'-to-5' exonuclease activity. Thermus filiformis (taxid: 276) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/521 (30%), Positives = 255/521 (48%), Gaps = 40/521 (7%)
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRV 1712
D + ++I+ P + ++ K+ + S + + + R+
Sbjct: 396 FDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVPSEDVLSEHLGRKA 455
Query: 1713 AQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKL 1772
++L L + L + + +E +E+PL +L +ME G+ VD++ + L KL
Sbjct: 456 LAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKL 515
Query: 1773 RYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEH 1832
+ E+K + +AG F++ + + +L+ + LP+ + K K ST L+ L +H
Sbjct: 516 KEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVK---KTKTGYSTSADVLEKLADKH 572
Query: 1833 PIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
IV I ++R + KL + + + + R + +H + Q T TGRLS +PNLQ
Sbjct: 573 DIVDYILQYRQIGKLQSTYIEGLLKVTR----PDSHKVHTRFNQALTQTGRLSSTDPNLQ 628
Query: 1893 CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK 1952
+ +E + KI R F+PS+++W++ AADYSQIELR++AH SK
Sbjct: 629 NIPIRLE---------------EGRKI--RQAFVPSEKDWLIFAADYSQIELRVLAHISK 671
Query: 1953 DPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLN 2012
D LI + D+ T A ++D V S R Q K + +GI+YG+ LS+ L
Sbjct: 672 DENLIEAFTNDM-DIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLG 730
Query: 2013 CSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSK 2072
+ EA I + SF GV +++ +V QKGYV +L R+R++ ++ N +S
Sbjct: 731 ITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSF 790
Query: 2073 AQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDE 2132
A+R A+N+ QGSAADIIK AMI+ +AA + + + RLLLQVHDE
Sbjct: 791 AERTAMNTPIQGSAADIIKKAMID---------------MAAKLKEKQLKARLLLQVHDE 835
Query: 2133 LVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
L+ E I+ LV + ME A L VPL V G +W
Sbjct: 836 LIFEAPKEEIEILEKLVPEVMEHALALDVPLKVDFASGPSW 876
|
In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2191 | ||||||
| 359476049 | 2181 | PREDICTED: LOW QUALITY PROTEIN: DNA poly | 0.979 | 0.983 | 0.680 | 0.0 | |
| 296081899 | 2091 | unnamed protein product [Vitis vinifera] | 0.938 | 0.983 | 0.677 | 0.0 | |
| 255551068 | 2154 | DNA polymerase theta, putative [Ricinus | 0.954 | 0.970 | 0.665 | 0.0 | |
| 356554501 | 2147 | PREDICTED: DNA polymerase theta-like [Gl | 0.968 | 0.988 | 0.643 | 0.0 | |
| 449442230 | 2144 | PREDICTED: DNA polymerase theta-like [Cu | 0.960 | 0.981 | 0.643 | 0.0 | |
| 297802740 | 2147 | predicted protein [Arabidopsis lyrata su | 0.968 | 0.988 | 0.626 | 0.0 | |
| 145334203 | 2154 | DNA polymerase theta subunit [Arabidopsi | 0.967 | 0.984 | 0.622 | 0.0 | |
| 357436569 | 2269 | DNA polymerase I family protein expresse | 0.893 | 0.862 | 0.625 | 0.0 | |
| 449522155 | 1607 | PREDICTED: DNA polymerase theta-like, pa | 0.720 | 0.982 | 0.722 | 0.0 | |
| 357150740 | 2057 | PREDICTED: uncharacterized protein LOC10 | 0.808 | 0.861 | 0.569 | 0.0 |
| >gi|359476049|ref|XP_002281624.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2860 bits (7414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1501/2205 (68%), Positives = 1726/2205 (78%), Gaps = 60/2205 (2%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
MAS S R RIDQF++SKKRK SP +K+GR EKD+K V+ SPS+KGTLDNYL DD
Sbjct: 1 MASDSIRNRIDQFFSSKKRKPLSPGLKTGRIEKDSKRAVDGSPSSKGTLDNYLVTYPDDN 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKV------ISRCSSK 114
T++ S + V KRNL+LEI+ SKDE ALLS Q T+ SR S+
Sbjct: 61 STARGSSAGKGPV-KRNLTLEINLPSKDENENALLSGQLGHGTTEAFGETHTENSRGLSQ 119
Query: 115 EGNSEVGCHMKDGS--AHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSS 172
G VG +KD S AH P + ELKQ DFLSLYCSE SSAS PS K+ +KR S
Sbjct: 120 MGGVGVGEQLKDCSVSAHGPVNSELKQIAADFLSLYCSEFPSSASLPSGLKVNVNKRCGS 179
Query: 173 PSLLGGEDNKIAKKKYCVSNLLQS---GEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQR 229
PSL + N+I+KK++C++N QS GE + C N N E+ Q G IVK + +SS+
Sbjct: 180 PSLQDVK-NEISKKRHCIANADQSRLEGEDS-CLNENNYEDGQLGLIVKPVERIFDSSRE 237
Query: 230 VTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEA 289
VT N + +Q SLRK ++ KST+N T CYTP P V + ETP S G+S+FSPGE+
Sbjct: 238 VTVGNDATEVQGSLRKSNERLKSTVNMTECYTPGPLTVNAFAHETPNSMRGSSMFSPGES 297
Query: 290 FWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYN-KSKEMLNEGDS 348
FWNEAI++ADG FA + E I +KS+ E+ NS NLRN K KEML +GD
Sbjct: 298 FWNEAIQVADGLFA------PKTDEQINAAKSEYEMKNSCNLRNAGCGFKLKEMLVDGDC 351
Query: 349 KVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMF 408
V+ ++ G S +G V DS ++SPLP+K DFLFE+KNL T P +AD + M
Sbjct: 352 TVEGMEIGVSSGSLGYRVKDS-DQVSPLPVKRFDFLFEEKNLDETNPPHCSADKLDVM-- 408
Query: 409 RDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDS 468
DG S GSV HK + + G+S+V++ +S+ +R++D+ SQ D+
Sbjct: 409 -DGEQSACGSVNHKVLKTTGIVIDYCKAQTNGGMSEVKDMNSIDAEAKREVDLLSQEKDN 467
Query: 469 ITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPW 528
I +DSP I K + + DEA TPSS LKD LDLS WLPSEIC+IY+K+GISKLY W
Sbjct: 468 IKADSPDLGITKSIIACECDEASTPSSFEPLKDSLDLSKWLPSEICNIYRKKGISKLYSW 527
Query: 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588
QV+CL VDGVLQ+RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE
Sbjct: 528 QVDCLKVDGVLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 587
Query: 589 HLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
HLEVLLEPLG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEEGRLSEIGIIVI
Sbjct: 588 HLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVI 647
Query: 649 DELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708
DELHMV DQNRGYLLELLLTKLRYAAGEG +S SGE+S SSGK+DPAHGLQIVGMSAT
Sbjct: 648 DELHMVGDQNRGYLLELLLTKLRYAAGEGHVESVSGESSNMSSGKSDPAHGLQIVGMSAT 707
Query: 709 MPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHI 768
MPNVAAVADWLQAALY+T+FRPVPLEEYIKVGN IY KKMD++RTI A+LGGKDPDHI
Sbjct: 708 MPNVAAVADWLQAALYQTDFRPVPLEEYIKVGNTIYDKKMDIIRTISKTADLGGKDPDHI 767
Query: 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALR 828
VELC+EVVQEGHSVL+FCSSRKGCE TARHVSKFLKKFS N H++ EF+DI+SAIDALR
Sbjct: 768 VELCNEVVQEGHSVLLFCSSRKGCEFTARHVSKFLKKFSTNAHNNTGEFVDISSAIDALR 827
Query: 829 RCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888
R PAGLDP+LEETLPSGVAYHHAGLTVEER++VETCYRKGL+RVLTATSTLAAGVNLPAR
Sbjct: 828 RSPAGLDPILEETLPSGVAYHHAGLTVEERDIVETCYRKGLLRVLTATSTLAAGVNLPAR 887
Query: 889 RVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
RVIFRQPRIGRDFIDGTRY+QMAGRAGRTGIDTKGES+LICKPEEVK+I GLLNESCPPL
Sbjct: 888 RVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKRICGLLNESCPPL 947
Query: 949 HSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLC 1008
+SCLSEDKNGMTHAILEVVA GIVQTA DI+RYVRCTLLNSTKPFQDVVKSAQDSLRWLC
Sbjct: 948 YSCLSEDKNGMTHAILEVVASGIVQTANDINRYVRCTLLNSTKPFQDVVKSAQDSLRWLC 1007
Query: 1009 HRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLST 1068
HRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESL+VLDDLSRAREGFVLASDLHLVYL T
Sbjct: 1008 HRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLVVLDDLSRAREGFVLASDLHLVYLVT 1067
Query: 1069 PINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGL 1128
PINV+VEPDWEL+YERF++LSALDQSVGN+VGV EP+LMRMAHGAPM S+K R++ KGL
Sbjct: 1068 PINVDVEPDWELFYERFMQLSALDQSVGNRVGVVEPFLMRMAHGAPMCASNKSRNNGKGL 1127
Query: 1129 HGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQAL 1188
H K + RLGIT ++LSD QTLRVCKRFYVALILS+LVQE PV EVCE FKVARGMVQ L
Sbjct: 1128 HDKFDNRLGITKCSLLSDEQTLRVCKRFYVALILSKLVQEVPVTEVCEAFKVARGMVQGL 1187
Query: 1189 QENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALY 1248
QENAGRFASMVS+FCERLGW DLEGL+AKFQNRVSFGVRAEIVELTTIPYVKGSRARALY
Sbjct: 1188 QENAGRFASMVSLFCERLGWNDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALY 1247
Query: 1249 KAGLRTPLAIAEASISEIVKALFESSSWIAEA---QRRVQLGVAKKIKNGARKIVLEKAE 1305
KAGLRTPLAIAEASI EIVKALFE SSW AE QR VQLGVAKKIKN ARKIVL+KAE
Sbjct: 1248 KAGLRTPLAIAEASIPEIVKALFEFSSWAAEGNSVQRNVQLGVAKKIKNAARKIVLDKAE 1307
Query: 1306 EARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHS 1365
EARIAAFSAFKSLGLNVPQFSRP+L A +N + +EAA+T+ +SSF+ M+ S
Sbjct: 1308 EARIAAFSAFKSLGLNVPQFSRPLLLIANDNPS--QEAASTSSGEGATSSFVGTECMK-S 1364
Query: 1366 DKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFV--G 1423
KP++E ++ S KV E EKL SD L E S +Q KF AENP V +
Sbjct: 1365 GKPAVEGSENSNKVASEIGVEKLKNMSDVILGTAGEVKSTGPIQCKFGAENPAVLSILND 1424
Query: 1424 PGTGGVEFNVNASEIKIPDTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLVNKDRA 1483
V+ N NA +P + S+ G N GT + D Q R + CL N +A
Sbjct: 1425 ELNSIVDRNENAV---MPLSIKSMNTG-NGNGTSDAYVDHGQHEQQR-GENECLDNNGKA 1479
Query: 1484 CNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPV 1543
KGPI+A N GGFD FLD W++ EFYFDIH++K SE NS +EIHG+A+CWENSPV
Sbjct: 1480 YEKGPIHATNTPGGFDSFLDLWDSVREFYFDIHFNKQSEVNSLAPYEIHGIAICWENSPV 1539
Query: 1544 YYVNLPKDLWSDHRRKDRFLIYGSSDK--NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKF 1601
YY+NLPKDL RK+ +L SD N+L H+LE K RW ++G+IM K+DVRKF
Sbjct: 1540 YYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWSKVGKIMGKKDVRKF 1599
Query: 1602 TWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWI 1661
TWN+KVQIQVLK+ AVSIQ+FG LNL ++GLE + +S+L+LSPV++ DG+DMCIV+WI
Sbjct: 1600 TWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELIDNSYLMLSPVYIVDGLDMCIVTWI 1659
Query: 1662 LWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSV 1721
LWPD+ERSSNPNLEKEV+KRLSSEAAAAANRSGRWKNQ RRAAHNGCCRRVAQTRALCSV
Sbjct: 1660 LWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRAAHNGCCRRVAQTRALCSV 1719
Query: 1722 LWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYT 1781
LWKLLVSEEL+E LL IEIPLV +LADME+WGIGVDMEGC+QARN+L KKLR+LEK+AY
Sbjct: 1720 LWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYE 1779
Query: 1782 LAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEH 1841
LAGM FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLR++ +
Sbjct: 1780 LAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRYKETCFSSC--Y 1837
Query: 1842 RTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFK 1901
T A L+ L S L H+ Q + + CVEH+VEFK
Sbjct: 1838 ITXAXLM---------LGFFSTFLVFLVLPLHYPQLAY---NFFFFLXAMXCVEHVVEFK 1885
Query: 1902 M--SNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGL 1959
M N+D+ N+E DH KINARDFF+PSQENW+LL ADYSQIELRLMAHFS+D +L L
Sbjct: 1886 MIKGNKDVC--NSEADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLTEL 1943
Query: 1960 LSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAK 2019
LSKPHGDVFTMIAA+WTG+ E VG QER+QTKRL+YGILYGMG NTL++QL CS EA+
Sbjct: 1944 LSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAE 2003
Query: 2020 EKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVN 2079
EKI+SF+SSFPGVASWLH AV+ C +KGYV++LKGRKRFLSKIKFG +KEK KA+RQAVN
Sbjct: 2004 EKIRSFRSSFPGVASWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVN 2063
Query: 2080 SICQGSAADIIKIAMINIHSIIVGGVYKPDSS--LAANFQMLKGRCRLLLQVHDELVLEV 2137
SICQGSAADIIKIAMINIHS+I GV +P+SS L A F MLKGRCR++LQVHDELVLEV
Sbjct: 2064 SICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEV 2123
Query: 2138 DPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQAD 2182
DPSV+KEA L++ ME++ LLVPLLVK++VG TWGSLEPF A+
Sbjct: 2124 DPSVMKEAGLLLKMTMENSTSLLVPLLVKLKVGRTWGSLEPFHAE 2168
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2848 bits (7382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1493/2203 (67%), Positives = 1709/2203 (77%), Gaps = 146/2203 (6%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
MAS S R RIDQF++SKKRK SP +K+GR EKD+K V+ SPS+KGTLDNYL DD
Sbjct: 1 MASDSIRNRIDQFFSSKKRKPLSPGLKTGRIEKDSKRAVDGSPSSKGTLDNYLVTYPDDN 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKV------ISRCSSK 114
T++ S + V KRNL+LEI+ SKDE ALLS Q T+ SR S+
Sbjct: 61 STARGSSAGKGPV-KRNLTLEINLPSKDENENALLSGQLGHGTTEAFGETHTENSRGLSQ 119
Query: 115 EGNSEVGCHMKDGS--AHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSS 172
G VG +KD S AH P + ELKQ DFLSLYCSE SSAS PS K+ +KR S
Sbjct: 120 MGGVGVGEQLKDCSVSAHGPVNSELKQIAADFLSLYCSEFPSSASLPSGLKVNVNKRCGS 179
Query: 173 PSLLGGEDNKIAKKKYCVSNLLQS---GEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQR 229
PSL + N+I+KK++C++N QS GE + C N N E+ Q G IVK
Sbjct: 180 PSLQDVK-NEISKKRHCIANADQSRLEGEDS-CLNENNYEDGQLGLIVKP---------- 227
Query: 230 VTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEA 289
VT N + +Q SLRK ++ KST+N T CYTP P V + ETP S G+S+FSPGE+
Sbjct: 228 VTVGNDATEVQGSLRKSNERLKSTVNMTECYTPGPLTVNAFAHETPNSMRGSSMFSPGES 287
Query: 290 FWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYN-KSKEMLNEGDS 348
FWNEAI++ADG FA + E I +KS+ E+ NS NLRN K KEML +GD
Sbjct: 288 FWNEAIQVADGLFA------PKTDEQINAAKSEYEMKNSCNLRNAGCGFKLKEMLVDGDC 341
Query: 349 KVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMF 408
V+ ++ G S +G V DS ++SPLP+K DFLFE+KNL T P +AD + M
Sbjct: 342 TVEGMEIGVSSGSLGYRVKDS-DQVSPLPVKRFDFLFEEKNLDETNPPHCSADKLDVM-- 398
Query: 409 RDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDS 468
DG S GSV HK + G+S+V++ +S+ +R++D+ SQ D+
Sbjct: 399 -DGEQSACGSVNHKVLKTTGIT--------NGGMSEVKDMNSIDAEAKREVDLLSQEKDN 449
Query: 469 ITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPW 528
I +DSP I K + + DEA TPSS LKD LDLS WLPSEIC+IY+K+GISKLY W
Sbjct: 450 IKADSPDLGITKSIIACECDEASTPSSFEPLKDSLDLSKWLPSEICNIYRKKGISKLYSW 509
Query: 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588
QV+CL VDGVLQ+RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE
Sbjct: 510 QVDCLKVDGVLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 569
Query: 589 HLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
HLEVLLEPLG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEEGRLSEIGIIVI
Sbjct: 570 HLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVI 629
Query: 649 DELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708
DELHMV DQNRGYLLELLLTKLRYAAGEG +S SGE+S
Sbjct: 630 DELHMVGDQNRGYLLELLLTKLRYAAGEGHVESVSGESS--------------------- 668
Query: 709 MPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHI 768
N++ VADWLQAALY+T+FRPVPLEEYIKVGN IY KKMD++RTI A+LGGKDPDHI
Sbjct: 669 --NMSTVADWLQAALYQTDFRPVPLEEYIKVGNTIYDKKMDIIRTISKTADLGGKDPDHI 726
Query: 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALR 828
VELC+EVVQEGHSVL+FCSSRKGCE TARHVSKFLKKFS N H++ EF+DI+SAIDALR
Sbjct: 727 VELCNEVVQEGHSVLLFCSSRKGCEFTARHVSKFLKKFSTNAHNNTGEFVDISSAIDALR 786
Query: 829 RCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888
R PAGLDP+LEETLPSGVAYHHAGLTVEER++VETCYRKGL+RVLTATSTLAAGVNLPAR
Sbjct: 787 RSPAGLDPILEETLPSGVAYHHAGLTVEERDIVETCYRKGLLRVLTATSTLAAGVNLPAR 846
Query: 889 RVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
RVIFRQPRIGRDFIDGTRY+QMAGRAGRTGIDTKGES+LICKPEEVK+I GLLNESCPPL
Sbjct: 847 RVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKRICGLLNESCPPL 906
Query: 949 HSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLC 1008
+SCLSEDKNGMTHAILEVVA GIVQTA DI+RYV
Sbjct: 907 YSCLSEDKNGMTHAILEVVASGIVQTANDINRYV-------------------------- 940
Query: 1009 HRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLST 1068
RKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESL+VLDDLSRAREGFVLASDLHLVYL T
Sbjct: 941 -RKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLVVLDDLSRAREGFVLASDLHLVYLVT 999
Query: 1069 PINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGL 1128
PINV+VEPDWEL+YERF++LSALDQSVGN+VGV EP+LMRMAHGAPM S+K R++ KGL
Sbjct: 1000 PINVDVEPDWELFYERFMQLSALDQSVGNRVGVVEPFLMRMAHGAPMCASNKSRNNGKGL 1059
Query: 1129 HGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQAL 1188
H K + RLGIT ++LSD QTLRVCKRFYVALILS+LVQE PV EVCE FKVARGMVQ L
Sbjct: 1060 HDKFDNRLGITKCSLLSDEQTLRVCKRFYVALILSKLVQEVPVTEVCEAFKVARGMVQGL 1119
Query: 1189 QENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALY 1248
QENAGRFASMVS+FCERLGW DLEGL+AKFQNRVSFGVRAEIVELTTIPYVKGSRARALY
Sbjct: 1120 QENAGRFASMVSLFCERLGWNDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALY 1179
Query: 1249 KAGLRTPLAIAEASISEIVKALFESSSWIAEA---QRRVQLGVAKKIKNGARKIVLEKAE 1305
KAGLRTPLAIAEASI EIVKALFE SSW AE QR VQLGVAKKIKN ARKIVL+KAE
Sbjct: 1180 KAGLRTPLAIAEASIPEIVKALFEFSSWAAEGNSVQRNVQLGVAKKIKNAARKIVLDKAE 1239
Query: 1306 EARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHS 1365
EARIAAFSAFKSLGLNVPQFSRP+L A +N + +EAA+T+ +SSF+ M+ S
Sbjct: 1240 EARIAAFSAFKSLGLNVPQFSRPLLLIANDNPS--QEAASTSSGEGATSSFVGTECMK-S 1296
Query: 1366 DKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFVGPG 1425
KP++E ++ S KV E EKL SD L E S +Q KF AENP V
Sbjct: 1297 GKPAVEGSENSNKVASEIGVEKLKNMSDVILGTAGEVKSTGPIQCKFGAENPAV------ 1350
Query: 1426 TGGVEFNVNASEIKIPDTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACN 1485
LS+ N +L+ + DR N CL N +A
Sbjct: 1351 -------------------LSIL-----------NDELN-SIVDRENE--CLDNNGKAYE 1377
Query: 1486 KGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYY 1545
KGPI+A N GGFD FLD W++ EFYFDIH++K SE NS +EIHG+A+CWENSPVYY
Sbjct: 1378 KGPIHATNTPGGFDSFLDLWDSVREFYFDIHFNKQSEVNSLAPYEIHGIAICWENSPVYY 1437
Query: 1546 VNLPKDLWSDHRRKDRFLIYGSSDK--NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTW 1603
+NLPKDL RK+ +L SD N+L H+LE K RW ++G+IM K+DVRKFTW
Sbjct: 1438 INLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWSKVGKIMGKKDVRKFTW 1497
Query: 1604 NMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILW 1663
N+KVQIQVLK+ AVSIQ+FG LNL ++GLE + +S+L+LSPV++ DG+DMCIV+WILW
Sbjct: 1498 NLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELIDNSYLMLSPVYIVDGLDMCIVTWILW 1557
Query: 1664 PDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLW 1723
PD+ERSSNPNLEKEV+KRLSSEAAAAANRSGRWKNQ RRAAHNGCCRRVAQTRALCSVLW
Sbjct: 1558 PDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRAAHNGCCRRVAQTRALCSVLW 1617
Query: 1724 KLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLA 1783
KLLVSEEL+E LL IEIPLV +LADME+WGIGVDMEGC+QARN+L KKLR+LEK+AY LA
Sbjct: 1618 KLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELA 1677
Query: 1784 GMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRT 1843
GM FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPI+PVIKEHRT
Sbjct: 1678 GMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRT 1737
Query: 1844 LAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKM- 1902
LAKLLNCTLGSICSLAR+S+ TQ+YTLHGHWLQTSTATGRLSMEEPNLQCVEH+VEFKM
Sbjct: 1738 LAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCVEHVVEFKMI 1797
Query: 1903 -SNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLS 1961
N+D+ N+E DH KINARDFF+PSQENW+LL ADYSQIELRLMAHFS+D +L LLS
Sbjct: 1798 KGNKDVC--NSEADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLTELLS 1855
Query: 1962 KPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEK 2021
KPHGDVFTMIAA+WTG+ E VG QER+QTKRL+YGILYGMG NTL++QL CS EA+EK
Sbjct: 1856 KPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAEEK 1915
Query: 2022 IKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSI 2081
I+SF+SSFPGVASWLH AV+ C +KGYV++LKGRKRFLSKIKFG +KEK KA+RQAVNSI
Sbjct: 1916 IRSFRSSFPGVASWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVNSI 1975
Query: 2082 CQGSAADIIKIAMINIHSIIVGGVYKPDSS--LAANFQMLKGRCRLLLQVHDELVLEVDP 2139
CQGSAADIIKIAMINIHS+I GV +P+SS L A F MLKGRCR++LQVHDELVLEVDP
Sbjct: 1976 CQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDP 2035
Query: 2140 SVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQAD 2182
SV+KEA L++ ME++ LLVPLLVK++VG TWGSLEPF A+
Sbjct: 2036 SVMKEAGLLLKMTMENSTSLLVPLLVKLKVGRTWGSLEPFHAE 2078
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis] gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2768 bits (7176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1451/2181 (66%), Positives = 1701/2181 (77%), Gaps = 90/2181 (4%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
M S S R RI+QF+ASKKRK+ SP +K G EK+A IT + SP+AKGTLDNYL NSQD
Sbjct: 1 MESDSSRIRINQFFASKKRKALSPGLKYG-IEKEATITSDGSPNAKGTLDNYLVNSQDQN 59
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEK----NQALLSDQAQPQA--TQKVISRCSSK 114
+ LLSR + VKRNL+LEI++ SKDEK + A L Q A +K S+ S
Sbjct: 60 ----RGLLSRQDSVKRNLALEINELSKDEKMDPCSVAKLDSQNSEGAGTIKKETSQGSCN 115
Query: 115 EGNSEV-GCHMKDGSAHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSSP 173
G+ V GC + SA ES ELKQF DFLSLYCSE+ S+A+SPS+ KL DHKRH SP
Sbjct: 116 AGHVAVEGCSVPRQSA---ESSELKQFANDFLSLYCSELQSTATSPSKPKLNDHKRHGSP 172
Query: 174 SLLGGEDNKIAKKKYC---VSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRV 230
L+ D K +KK++C S L GE T K E QS I + + S+
Sbjct: 173 LLVDDRD-KTSKKRHCDCVTSQSLSEGE-TAFFFEKKAENKQSAIIATAEMPLYHVSREA 230
Query: 231 TDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEAF 290
T N + LQASLRKC++ S+ C TP SIVK+ VRETP+S G+S+FSPGEAF
Sbjct: 231 TVVNDPIKLQASLRKCNRVSRLPAGMAECSTPGSSIVKSLVRETPRSARGSSMFSPGEAF 290
Query: 291 WNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSKEMLNEGDSKV 350
WNEAI+IADG F+ + +A G D ++ +KS++ML+E S++
Sbjct: 291 WNEAIQIADGLFSEAG---NPLALGADDVNKES-----------CSDKSRQMLDESGSRI 336
Query: 351 QHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMFRD 410
Q + SL+ + DS+K+ S LP+K+LD LF+DKNL T P A D+ M +
Sbjct: 337 QQMANSCSLELFRAHMRDSIKKSSTLPVKNLDLLFQDKNLDTTSPFRTADDSD---MLKG 393
Query: 411 GVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSIT 470
G SE GSV K + K ++ ++ E + DVQ+ +S+ + +R+ D+ Q DSI
Sbjct: 394 GEQSECGSVNIKCIRTGKIATCNEVQTKEE-MHDVQKTESIYAMTKREADLLLQYTDSIM 452
Query: 471 SDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQV 530
+SP N I+ PV + EA TPSS LKD LDL +WLP+E+CSIYK+RGISKLYPWQV
Sbjct: 453 PNSPINEIRNPVASAYG-EADTPSSFVPLKDRLDLVNWLPAEVCSIYKRRGISKLYPWQV 511
Query: 531 ECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590
+CL VDGVLQRRNLVYCASTSAGKSFVAEILMLRR+IST K+A LVLPYVSICAEKAE+L
Sbjct: 512 DCLQVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVISTRKIAFLVLPYVSICAEKAEYL 571
Query: 591 EVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650
E LLEPLG+HVRSYYGNQGGG LPKDTSVAVCTIEKANSL+NR+LEEGRLSEIGIIVIDE
Sbjct: 572 EGLLEPLGKHVRSYYGNQGGGILPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVIDE 631
Query: 651 LHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP 710
LHMV DQNRGYLLEL+LTKLRYAAGEG S+S+SGE+SGTSS K DPAHGLQIVGMSATMP
Sbjct: 632 LHMVGDQNRGYLLELMLTKLRYAAGEGNSESTSGESSGTSS-KGDPAHGLQIVGMSATMP 690
Query: 711 NVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVE 770
NVAAVADWLQAA Y+TNFRPVPLEE+IKVGN IY KKMD+VRTI AA LGGKDPDHIVE
Sbjct: 691 NVAAVADWLQAAFYQTNFRPVPLEEFIKVGNTIYDKKMDIVRTIPRAAELGGKDPDHIVE 750
Query: 771 LCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRC 830
LC+EVVQ+GHSVLIFCSSRKGCESTA+HVSKFLKKFS+NV + +SEF+DI SA++ALRR
Sbjct: 751 LCNEVVQDGHSVLIFCSSRKGCESTAKHVSKFLKKFSVNVQN-NSEFLDIASAVEALRRS 809
Query: 831 PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890
P GLDP+LEETLPSGVAYHHAGLTVEERE++E+CYR+GL+RVLTATSTLAAGVNLPARRV
Sbjct: 810 PVGLDPILEETLPSGVAYHHAGLTVEEREIIESCYRRGLLRVLTATSTLAAGVNLPARRV 869
Query: 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHS 950
IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES+LICKP+E+K+IMGLLNE+CPPL S
Sbjct: 870 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESILICKPDELKRIMGLLNENCPPLQS 929
Query: 951 CLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHR 1010
CLSEDKNGMTHAILEVVAGGIVQTA DIHRYVRCTLLNSTKPF+DVVKSAQDSLRWLCHR
Sbjct: 930 CLSEDKNGMTHAILEVVAGGIVQTANDIHRYVRCTLLNSTKPFRDVVKSAQDSLRWLCHR 989
Query: 1011 KFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPI 1070
KFL+W +DTKLYSTTPLGRAAFGSSLCPEESLIVLD+LSRAREGFVLASDLHLVYL+TPI
Sbjct: 990 KFLDWCDDTKLYSTTPLGRAAFGSSLCPEESLIVLDELSRAREGFVLASDLHLVYLATPI 1049
Query: 1071 NVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHG 1130
NVEVEPDWELYYERF+ELS LD+SVGN+VGVSEP+LMRMAHGAPMR+ ++ D+ KGL G
Sbjct: 1050 NVEVEPDWELYYERFMELSPLDKSVGNRVGVSEPFLMRMAHGAPMRMLNRSTDNMKGLPG 1109
Query: 1131 KLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQE 1190
KLE + G + N+++SD Q+LRVC+RFYVALILSRLVQETPV EVCE FKVARGMVQALQE
Sbjct: 1110 KLENQHGKSKNSIISDEQSLRVCRRFYVALILSRLVQETPVAEVCEAFKVARGMVQALQE 1169
Query: 1191 NAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKA 1250
N+GRFASMVS+FCERLGW+D+EGL++KFQ+RVSFGVRAEIVELTTIPYVKGSRARALYKA
Sbjct: 1170 NSGRFASMVSLFCERLGWHDVEGLVSKFQSRVSFGVRAEIVELTTIPYVKGSRARALYKA 1229
Query: 1251 GLRTPLAIAEASISEIVKALFESSSWIAE---AQRRVQLGVAKKIKNGARKIVLEKAEEA 1307
GLRTPLAIAEAS+SEIVKA+FESSSW A+ AQRR+QLGVAKKIKNGARKIVLEKAEEA
Sbjct: 1230 GLRTPLAIAEASVSEIVKAIFESSSWTAQEGSAQRRLQLGVAKKIKNGARKIVLEKAEEA 1289
Query: 1308 RIAAFSAFKSLGLNVPQFSRPIL-STATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSD 1366
R+AAFSAFKSLGL++PQFSRP+L +T+ +N+ E+ A + D +++ I V +E +D
Sbjct: 1290 RVAAFSAFKSLGLDIPQFSRPLLMNTSVDNA---EKHAASNLSEDGTTNVI--VSLEQTD 1344
Query: 1367 KPS----LEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFV 1422
S +E ++ +V LES G+KL++T D L A E S +Q AEN V
Sbjct: 1345 HTSYDLCIEGSKKPAEVTLESEGDKLIKTIDVVLEASAETNSTGLVQSNIGAENSKVVDR 1404
Query: 1423 GPGTGGVEFNVNASEIKIPDTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLV-NKD 1481
G N NA+ + + LSV+ ++ GT T R++ EV ++ +R N +
Sbjct: 1405 KSLPTG---NHNANAVVV----LSVESEQDGDGTGTHQRNILREVHEQCSRQNLSSDNME 1457
Query: 1482 RACNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENS 1541
AC KGPI A N SGG D FL W+A EFYFD+HY+K SE NS +EIHG+A+CWENS
Sbjct: 1458 NACEKGPIKASNISGGLDSFLVLWDAAQEFYFDLHYNKRSEVNSVAPYEIHGMAICWENS 1517
Query: 1542 PVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKF 1601
P+YYVNLPKD L+ + K VL PE+ LE+++ RW RIG+IM KR+V KF
Sbjct: 1518 PIYYVNLPKD-----------LLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIKF 1566
Query: 1602 TWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWI 1661
TWN+K+QIQVLK+A VSI RFG NL G L LE + SS L L +++ +GIDMCIV+WI
Sbjct: 1567 TWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLELIDSSHLPLPQINVTEGIDMCIVAWI 1626
Query: 1662 LWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSV 1721
LWPD+ERSSNPNLEKEVK+RL ++A AAANR+GRWKNQMRRAAHNGCCRRVAQTRALCSV
Sbjct: 1627 LWPDEERSSNPNLEKEVKRRLPTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQTRALCSV 1686
Query: 1722 LWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYT 1781
LWKLL+SE L+EAL IE+PLVNVLADMELWGIGVDME CL+ARN+L KKLR+LEKKAY
Sbjct: 1687 LWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHLEKKAYE 1746
Query: 1782 LAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEH 1841
LAGM FSLYTAADIANVLYG LKLPIPEGH KGK HPSTDKHCLDLLR K++
Sbjct: 1747 LAGMTFSLYTAADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLDLLR---------KKY 1797
Query: 1842 RTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFK 1901
A + T+ + + M + W+ R ++ +QCVEHMVEFK
Sbjct: 1798 CCFAFMFYATIAA--LKLGLLMLFFLILMILIWVSEIKVLLRTNLGV--MQCVEHMVEFK 1853
Query: 1902 MSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLS 1961
+S D GG+AE ++ KINAR+FFIP+QENW+LL ADYSQIELRLMAHFSKD +LI LLS
Sbjct: 1854 IS-MDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRLMAHFSKDASLIELLS 1912
Query: 1962 KPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEK 2021
KPHGDVFT+IAARWTG++E+SV S ERDQTKRL+YGILYGMG NTL++QL CSS+EA EK
Sbjct: 1913 KPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGILYGMGANTLAQQLECSSDEAAEK 1972
Query: 2022 IKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSI 2081
IKSFKS FPGVASWLH AV+SC + GYVE+LKGRKRFLSKIKFGN+KEKSKAQRQAVNSI
Sbjct: 1973 IKSFKSCFPGVASWLHEAVASCRKNGYVETLKGRKRFLSKIKFGNSKEKSKAQRQAVNSI 2032
Query: 2082 CQGSAADIIKIAMINIHSII--VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDP 2139
CQGSAAD+IKIAMINI+S+I V G P SSLA F MLKGRCR+LLQVHDELVLEVDP
Sbjct: 2033 CQGSAADLIKIAMINIYSVIARVDGP-DPSSSLATKFHMLKGRCRILLQVHDELVLEVDP 2091
Query: 2140 SVIKEAVSLVQKCMESAALLL 2160
VIKEA SL+Q ME+AA LL
Sbjct: 2092 PVIKEAASLLQAGMENAASLL 2112
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554501|ref|XP_003545584.1| PREDICTED: DNA polymerase theta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2715 bits (7037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1418/2204 (64%), Positives = 1663/2204 (75%), Gaps = 82/2204 (3%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
MAS S R+RIDQFYASKKRK+ SP K+GR EK A+ + SPSAKGTL+ YL +SQD
Sbjct: 1 MASPSHRSRIDQFYASKKRKAASPVPKAGRFEKGARHGADESPSAKGTLEGYLVSSQD-- 58
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEV 120
+ VKRNL+ EI +E N+ +S +Q + SE+
Sbjct: 59 GGGDGCGDANTVKVKRNLTSEIGGSLDNELNKHTVSLGQGCGDSQSIQP--------SEI 110
Query: 121 GCHMKDGSAHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSSPSLLGGED 180
G G A E KQF DFLSLYCS +H S P E K+ DHKRH SP+L+ G
Sbjct: 111 G----QGVAKS----ERKQFAADFLSLYCSVLHPSVGLPLEMKMDDHKRHGSPTLVEGNS 162
Query: 181 NKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNL--VPNSSQRVTDSNASLL 238
+ K L GE T S K E+ +SG + ++ VP S +V+ +
Sbjct: 163 VLLRKNNDTAGELCFGGENTLLS-VKIDEDIKSGVVGNNNSMGCVPGSCTKVSGGGDTTG 221
Query: 239 LQASLRKCDKSSKSTLNTTACY-TPEPSIVKTYVRETPKSTCGNSIFSPGEAFWNEAIEI 297
+ RKC+ + K ++ Y TP IVK VRETPKST G+S FSPGEAFWNEAI++
Sbjct: 222 FETGFRKCNNTPKPSMKLAEYYNTPGSLIVKASVRETPKSTRGSSSFSPGEAFWNEAIQL 281
Query: 298 ADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSKEMLNEGDSKVQHIKAGG 357
ADG PS++ + + E+ NS NL+N + K +++L++ +++++ + G
Sbjct: 282 ADGLCVPMGNDPSKVMGESNVVEEEPEMKNSCNLQNYD-GKPRKILDQSKNRIRNREMGA 340
Query: 358 SLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLK-GTKPGCGAADTSEAMMFRDGVVSEK 416
L +G DSVKE S LP+KH DF FED NL+ T C D+ V+
Sbjct: 341 PLGLVGMHTKDSVKEASSLPVKHFDFSFEDNNLEENTLQDCRVGDSIN--------VTCV 392
Query: 417 GSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTN 476
+ SC I E +++VQE V + +R Q S+TS+SP N
Sbjct: 393 AGKQYDSCSMIGHT--------YEKMNEVQENTLVDTLGKR----VCQDNVSMTSNSPHN 440
Query: 477 VIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVD 536
++ P+ SDEA TPS+S L D DL+SWLP EICSIY+K+GIS+LY WQV+CL VD
Sbjct: 441 EVRTPISAHASDEASTPSTSVSLNDHFDLNSWLPPEICSIYRKKGISRLYSWQVDCLRVD 500
Query: 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEP 596
GVLQRRNLVYCASTSAGKSFVAEILMLRR+I TGKMALLVLPYVSICAEKAEHLE LL+P
Sbjct: 501 GVLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLERLLDP 560
Query: 597 LGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656
LG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSLVNR+LEEGRLSE+GIIVIDELHMV D
Sbjct: 561 LGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLVNRLLEEGRLSEMGIIVIDELHMVGD 620
Query: 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVA 716
RGYLLEL+LTKLRYAAGEG SS GE+SG SS KADPA GLQIVGMSATMPNVAAVA
Sbjct: 621 PRRGYLLELMLTKLRYAAGEGIPKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVA 680
Query: 717 DWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776
DWLQAALY+T FRPVPLEEYIKVGN+IY+K M++ R I AA LGGKDPDH+VELC+EVV
Sbjct: 681 DWLQAALYQTEFRPVPLEEYIKVGNSIYNKSMELCRIISKAAELGGKDPDHVVELCNEVV 740
Query: 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDP 836
QEGHSVLIFCSSRKGCESTARH++KFLK F+++ ++D EF DITSAI++L +CPAGLDP
Sbjct: 741 QEGHSVLIFCSSRKGCESTARHIAKFLKSFTVD--ANDCEFADITSAINSLGKCPAGLDP 798
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896
+L+ETLPSGVA+HHAGLTVEERE+VETCYRKGL+RVLTATSTLAAGVNLPARRVIFRQPR
Sbjct: 799 ILQETLPSGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPR 858
Query: 897 IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDK 956
IG DF+DGTRY+QMAGRAGRTGIDTKGES+LICKPEE+KK+ GLLNESCPPLHSCLSED
Sbjct: 859 IGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEELKKVSGLLNESCPPLHSCLSEDM 918
Query: 957 NGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWN 1016
NGMTHAILEVVAGGIVQTA DI+RYVRCTLLNSTKPF DVVKSAQ+SLRWLC RKFLEWN
Sbjct: 919 NGMTHAILEVVAGGIVQTASDINRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWN 978
Query: 1017 EDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEP 1076
EDTKLYSTTPLGRA+FGSSLCP+ESLIVL DLSRAREGFVLASDLHLVYL TPINV+VEP
Sbjct: 979 EDTKLYSTTPLGRASFGSSLCPQESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEP 1038
Query: 1077 DWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRL 1136
DWELYYE F++LS LDQSVGN+VGV+EP+LM MAHGAP+R S+K RD+T+ LH + +L
Sbjct: 1039 DWELYYEHFVKLSLLDQSVGNRVGVTEPFLMYMAHGAPLRASNKSRDNTRSLHNQRRNQL 1098
Query: 1137 GITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFA 1196
GI+S D QTLRVC+RFYVALILS LVQE PV EVCE FKVARGMVQALQENAGRFA
Sbjct: 1099 GISSATANYDDQTLRVCRRFYVALILSLLVQEIPVGEVCEAFKVARGMVQALQENAGRFA 1158
Query: 1197 SMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPL 1256
SMV+VFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELTTIPYVKGSRAR+LYKAGLRTP
Sbjct: 1159 SMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARSLYKAGLRTPH 1218
Query: 1257 AIAEASISEIVKALFESSSWIAE--AQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSA 1314
AIAEASI EIVKALFESSSW E AQR Q G+AKKIKNGARKIV +KAEEA AAFSA
Sbjct: 1219 AIAEASIPEIVKALFESSSWATEGSAQRGFQFGIAKKIKNGARKIVFDKAEEASNAAFSA 1278
Query: 1315 FKSLGLNVPQFSRPILSTATENS----TGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSL 1370
FKSLG NVPQF ILSTA +S TG + T D S SF+ +++++K +L
Sbjct: 1279 FKSLGFNVPQFDPQILSTAARDSIRLGTGSTSGSDT---TDTSHSFVNADCIDNTNKFTL 1335
Query: 1371 EANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFVGPGTGGVE 1430
+ + E L++ S N A VEG S + + + VP GP E
Sbjct: 1336 DKEK-----------EDLIKLSVNGTVASVEGKSRSRMICSLSS----VPVAGPKMD--E 1378
Query: 1431 FNVNASEIKIPDTT-LSVQLGK-NAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGP 1488
N + K D T LSVQL K N + D + N + N + KGP
Sbjct: 1379 LNRTSDHTKNADMTILSVQLQKPNDKSGVHDGCDAHCTEEAHKNGNLASGNAGSSSQKGP 1438
Query: 1489 INAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNL 1548
INA+++ GG D FLD W++ EFYFDIHY K E +S FEIHG+AVCWENS VYY+NL
Sbjct: 1439 INAVSSPGGLDSFLDLWDSMPEFYFDIHYIKRLELHSTAPFEIHGIAVCWENSSVYYINL 1498
Query: 1549 PKDLWSDHRRKDRFLIYGS----SDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWN 1604
P+D+ KD L + + + LE+ + RW RI +I+ K +VRKFTWN
Sbjct: 1499 PRDILLSDSIKDGCLSLSACSHKKKVSSSNSKQDLEIARSRWNRISKIIGKINVRKFTWN 1558
Query: 1605 MKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWP 1664
+K+Q+QVLK A S+QRFG L+ +G S+ LE V +S++LL P+H+KD IDMCIV+WILWP
Sbjct: 1559 LKIQMQVLKRPAFSVQRFGCLDTLGKSMDLEVVDNSYVLLPPIHVKDAIDMCIVAWILWP 1618
Query: 1665 DDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724
D+E SS+PNL+KEVKKRLSSE AA AN+SGRW+NQMRRAAHNGCCRRVAQ RAL SVLWK
Sbjct: 1619 DEESSSSPNLDKEVKKRLSSEDAAVANQSGRWRNQMRRAAHNGCCRRVAQIRALSSVLWK 1678
Query: 1725 LLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAG 1784
LLVSE+L+E L++IEIPLVNV+ADMELWGIGVD+E C+QAR LL K+L++LEK+AY LAG
Sbjct: 1679 LLVSEKLVEVLMDIEIPLVNVVADMELWGIGVDLERCIQARKLLIKRLKHLEKEAYKLAG 1738
Query: 1785 MKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTL 1844
FSL ADIA VLY HLKLPIP+ NKGKQHPST KHCLD LRHEHPIVPVIKEHRT+
Sbjct: 1739 TTFSLNMPADIARVLYEHLKLPIPDVRNKGKQHPSTSKHCLDALRHEHPIVPVIKEHRTM 1798
Query: 1845 AKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN 1904
AKLLN TLGSICSLAR+S+STQKYTLHGHWLQTSTATGRLSMEEPNLQCVEH VEFKM +
Sbjct: 1799 AKLLNSTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVEFKMKD 1858
Query: 1905 EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPH 1964
E+ G+A+ +C INARDFF+P+Q+NW+LL ADYSQIELRLMAHFSKD +L+ LLSKP
Sbjct: 1859 EN--EGDADESYCTINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLVELLSKPD 1916
Query: 1965 GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKS 2024
GDVFTMIAARWTG E SV S+ER+QTKR++YGILYGMG N+L+EQL+C+S+EA EKI +
Sbjct: 1917 GDVFTMIAARWTGCPEVSVCSKEREQTKRMVYGILYGMGVNSLAEQLDCTSDEAAEKIAN 1976
Query: 2025 FKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQG 2084
FKSSFPGV+SWL AV+SC KGYVE+LKGRKRFLSKIK+G++ EKSKAQRQAVNSICQG
Sbjct: 1977 FKSSFPGVSSWLLEAVASCRSKGYVETLKGRKRFLSKIKYGSSTEKSKAQRQAVNSICQG 2036
Query: 2085 SAADIIKIAMINIHSIIVGGVYKPD--SSLAANFQMLKGRCRLLLQVHDELVLEVDPSVI 2142
SAADIIKIAM+ I+S IV G PD SSLA F MLK RCR+LLQVHDEL+LEVDPSVI
Sbjct: 2037 SAADIIKIAMLRIYSAIVTGFDSPDSSSSLATKFHMLKDRCRILLQVHDELMLEVDPSVI 2096
Query: 2143 KEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNYTN 2186
KEA L+Q ME+A LLVPL VK++VG TWGSLEP+ +D + N
Sbjct: 2097 KEAALLLQTSMENAVSLLVPLHVKLKVGRTWGSLEPYTSDKFNN 2140
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442230|ref|XP_004138885.1| PREDICTED: DNA polymerase theta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2686 bits (6963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1425/2214 (64%), Positives = 1673/2214 (75%), Gaps = 109/2214 (4%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
MASGSP +RIDQFYASKKRK +PS+KSG +K+ K +E SP AKGTLDNYL SQD G
Sbjct: 1 MASGSPPSRIDQFYASKKRKPLTPSLKSGSYDKNGKKALEGSPGAKGTLDNYLVISQDHG 60
Query: 61 ------HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQAT-QKVISRCSS 113
H+ +++L S +VKRNL L+I+ ++E + S + T + SS
Sbjct: 61 SSDNPSHSVRENL-SAQNLVKRNLLLKINSSFRNEHGETTSSRGCDKKRTLEDSFETRSS 119
Query: 114 KEGNSEVGCHMKDGSAHIPESLELKQFPTDFLSLYCS-EIHSSASSPSEAKLKDHKRHSS 172
++ C G E ELKQF DFLSLYCS E+ ++ SSP E K+ KRHSS
Sbjct: 120 TVKSTASDC----GITPCTEKPELKQFAADFLSLYCSNELQTTVSSPVEQKVTFLKRHSS 175
Query: 173 PSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTD 232
PS L GE K+ KK + + + + SNA + +S F+V+TG+ V
Sbjct: 176 PSHLEGE-AKLPKKMHSIVGPSNAESEPDSSNALSEGNKESNFVVETGDTV--------- 225
Query: 233 SNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEAFWN 292
S+ +L+A ++KC+++ S T C TP S T++R+TPKS G+S FSPGEAFW
Sbjct: 226 SHHPAVLKACMQKCNQAPTSPYCLTECKTPGLSTGTTFIRQTPKS--GSSTFSPGEAFWK 283
Query: 293 EAIEIADGFFAHTDIGPSQIAEGIADSKSQNEI---NNSYNLRNKNYNKSKEMLNEGDSK 349
EAI +ADG A PS IA D++ N + +N+ L K + +
Sbjct: 284 EAIVLADGLRA-----PS-IALINCDAEEANLVESQSNTKKLPIPEEPAQKRLKGQFGGG 337
Query: 350 VQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMFR 409
++ G + D+ + + +S LP+KH DF +DKNL + C A++ S+ +
Sbjct: 338 SGGVRLGEPGASLRSDLKELDRVVSSLPVKHFDFSADDKNLDDSTSPCCASNESKVNAYD 397
Query: 410 DGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSI 469
S++ TH S K K ++ E I + SV +V+E KL+I S DSI
Sbjct: 398 LNEQSDRCYTTHISLPKHNDKTRDSDSLTKEKIQETIVTSSVPVVNEVKLNIFSPS-DSI 456
Query: 470 TSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQ 529
TSD+ + ++ ++ DE TPSSS KD LDLS WLP EI SIYK++GI+KL+PWQ
Sbjct: 457 TSDTAAHELRASTIHDSRDET-TPSSSTRHKDWLDLSCWLPPEISSIYKEKGITKLHPWQ 515
Query: 530 VECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589
VECL VDGVLQRRNLVYCASTSAGKSFVAEILMLRR+ISTGKMALLVLPYVSICAEKA H
Sbjct: 516 VECLKVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVISTGKMALLVLPYVSICAEKAAH 575
Query: 590 LEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVID 649
L+VLLE LG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEE RLSEIGIIVID
Sbjct: 576 LDVLLESLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEECRLSEIGIIVID 635
Query: 650 ELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM 709
ELHMV DQ RGYLLELLLTKLRYAAGEG DSSSGE+SGTSSGK+DPAHG+QIVGMSATM
Sbjct: 636 ELHMVGDQTRGYLLELLLTKLRYAAGEGNLDSSSGESSGTSSGKSDPAHGIQIVGMSATM 695
Query: 710 PNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIV 769
PNVAAVADWLQAALY T+FRPVPLEEYIKVGN IY+K +D+VRTI ANLGG+DPDHIV
Sbjct: 696 PNVAAVADWLQAALYHTDFRPVPLEEYIKVGNTIYNKSLDIVRTISKTANLGGRDPDHIV 755
Query: 770 ELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRR 829
ELC+EVV++GHSVLIFCSSRKGCESTA+HVSKFLKKFS+ + + +SEF DI SAIDALRR
Sbjct: 756 ELCNEVVEDGHSVLIFCSSRKGCESTAKHVSKFLKKFSVKIQNDNSEFTDIFSAIDALRR 815
Query: 830 CPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889
CP+GLDPVLEET PSGVAYHHAGLTVEEREVVETCYRKGL+RVLTATSTLAAGVNLPARR
Sbjct: 816 CPSGLDPVLEETFPSGVAYHHAGLTVEEREVVETCYRKGLLRVLTATSTLAAGVNLPARR 875
Query: 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLH 949
VIFRQPRIGRDFIDG RYRQMAGRAGRTGIDTKGES+LIC+PEEVK+I LLNESCPPL
Sbjct: 876 VIFRQPRIGRDFIDGARYRQMAGRAGRTGIDTKGESVLICRPEEVKRINELLNESCPPLQ 935
Query: 950 SCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCH 1009
SCLSEDKNGMTHAILEVVAGGIVQTA DIHRYVRCTLLNSTKPFQDVVKSAQ+SLRWLCH
Sbjct: 936 SCLSEDKNGMTHAILEVVAGGIVQTATDIHRYVRCTLLNSTKPFQDVVKSAQESLRWLCH 995
Query: 1010 RKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTP 1069
KFLEWN DTKLYSTTPLGRA+FGSSL PEESLIVLDDLSRAREGFVLASDLHLVYL TP
Sbjct: 996 GKFLEWNGDTKLYSTTPLGRASFGSSLSPEESLIVLDDLSRAREGFVLASDLHLVYLVTP 1055
Query: 1070 INVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLH 1129
INV+VEPDWELYYE F+ LS+LDQSVGN+VG +EP+LMRMAHGAP+R ++ R+ GL
Sbjct: 1056 INVDVEPDWELYYELFMGLSSLDQSVGNRVGATEPFLMRMAHGAPVRRANISRNGVAGLR 1115
Query: 1130 GKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQ 1189
K + +G+ + S+ QT+RVCKRFYVALILSRLVQETP+ EVC+ FKVARGMVQALQ
Sbjct: 1116 TKRDEHVGVYGDRP-SEEQTIRVCKRFYVALILSRLVQETPIPEVCDAFKVARGMVQALQ 1174
Query: 1190 ENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYK 1249
E+AGRFASMVSVFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYK
Sbjct: 1175 ESAGRFASMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYK 1234
Query: 1250 AGLRTPLAIAEASISEIVKALFESSSWIAE--------AQRRVQLGVAKKIKNGARKIVL 1301
AGLRTPLAIAEAS +E+VKAL ES+SW E AQ+R+ +G+A+KIK+GARK+VL
Sbjct: 1235 AGLRTPLAIAEASDAELVKALSESASWTTEGERCDYFTAQKRMHVGLARKIKHGARKVVL 1294
Query: 1302 EKAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVP 1361
+KAEEARIAAFSAFKSLG VPQ S P+ ++A N T + T
Sbjct: 1295 DKAEEARIAAFSAFKSLGFTVPQISHPLSASADGNITAQVAVGTQ--------------- 1339
Query: 1362 MEHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPF 1421
+E V S+ EK++ + ++ A+ +++Q NPP
Sbjct: 1340 -------QMERVLTLSCVGGTSSSEKVVGKNPSQTGAIS-----IDVKQSNSGVNPP--- 1384
Query: 1422 VGPGTGGVEFNVNASEIKIPDTTLSVQLGKNAIGTITSN--RDLDLEVQDRPNRDPCL-- 1477
VNA I D+ + I+S+ R D + Q + L
Sbjct: 1385 -----------VNAEGSAIQDSNTVGECAGKVDVAISSHLERITDKDAQREQHSSKVLHS 1433
Query: 1478 VNKDRACNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVC 1537
+ +D + KGPI A + SGGF+ FL+ W+A+ EFYFD++Y K SE NS V FE+HG+A+C
Sbjct: 1434 LKRDGSSMKGPIQAASTSGGFESFLNLWDASQEFYFDLYYTKRSEVNSVVPFELHGIAIC 1493
Query: 1538 WENSPVYYVNLPKDLWSDHRRK----DRFLIYGSSDK-NVLTPEHQLEMIKQRWKRIGEI 1592
WE SPVYYVN+PKDL K D + S D+ +V EH EMI+ RWK+I EI
Sbjct: 1494 WEKSPVYYVNIPKDLLGPKSGKGLCPDDSI---SGDQVDVSQNEHWFEMIEMRWKKINEI 1550
Query: 1593 MEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDG 1652
K++VRKF WN+KVQ+QVLK VSIQ+ G LN ++GL+ V S+++LS VH+ +
Sbjct: 1551 FTKKNVRKFAWNLKVQVQVLKCPGVSIQKLGFLNSARRNMGLKLVDGSYIVLSRVHMSNV 1610
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRV 1712
IDMCIV+WILWPDDER+S NLEKEVKKRLS EAAAAANRSG+WKNQMRR AHNGCCRRV
Sbjct: 1611 IDMCIVAWILWPDDERNSTLNLEKEVKKRLSGEAAAAANRSGQWKNQMRRVAHNGCCRRV 1670
Query: 1713 AQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKL 1772
AQTRALCSVLWKL++SE+L++AL NIEIPLV +LADME WGIGVDMEGC++ARNLL KKL
Sbjct: 1671 AQTRALCSVLWKLIISEKLLDALNNIEIPLVGILADMETWGIGVDMEGCIRARNLLGKKL 1730
Query: 1773 RYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEH 1832
R LEK+AY LAGM FSLY AADIANVLYGHLKL IPEG NKGKQHPSTDKHCLDLLR+EH
Sbjct: 1731 RCLEKEAYRLAGMTFSLYAAADIANVLYGHLKLSIPEGFNKGKQHPSTDKHCLDLLRNEH 1790
Query: 1833 PIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
PIVPVIKEHRTLAKL NCTLGSICSLA++S TQKYTLHGHWLQTSTATGRLSMEEPNLQ
Sbjct: 1791 PIVPVIKEHRTLAKLFNCTLGSICSLAKLSARTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1850
Query: 1893 CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK 1952
CVEH VEFKM NED +VDHCKINARDFFI +QENW+LL+ADYSQIELRLMAHFSK
Sbjct: 1851 CVEHAVEFKM-NED------DVDHCKINARDFFISTQENWLLLSADYSQIELRLMAHFSK 1903
Query: 1953 DPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLN 2012
D LI LLS PHGDVFTMIAARWTG++EDS+GS ERDQTKRL+YGILYGMG +L+ QL
Sbjct: 1904 DSLLIELLSIPHGDVFTMIAARWTGKTEDSIGSHERDQTKRLVYGILYGMGAKSLALQLE 1963
Query: 2013 CSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSK 2072
CS +EA EKI+SFKSSFPGVASWLH AV+ C QKGYVE+LKGR+RFLSKI +KEKSK
Sbjct: 1964 CSRDEAVEKIQSFKSSFPGVASWLHEAVAFCRQKGYVETLKGRRRFLSKINSPISKEKSK 2023
Query: 2073 AQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSL--AANFQMLKGRCRLLLQVH 2130
AQRQAVNSICQGSAADIIK+AMI+++S+I G PD ++ AAN +L+G CR++LQVH
Sbjct: 2024 AQRQAVNSICQGSAADIIKLAMIHVYSVI--GTDAPDLTVLPAANSNILRGHCRIVLQVH 2081
Query: 2131 DELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
DELVLEVDPS +KEA SL+QK ME+AA LLVPL VK++VG TWGSLE F DN+
Sbjct: 2082 DELVLEVDPSFVKEAASLLQKSMENAASLLVPLQVKLKVGRTWGSLETFLPDNF 2135
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2581 bits (6691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1382/2207 (62%), Positives = 1641/2207 (74%), Gaps = 85/2207 (3%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
M S S ++RIDQFY SKKRK +SP++KSGR EK+ K+T E SP KGTLDNYLK S DD
Sbjct: 1 MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDNYLKASLDDK 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSE- 119
T+ L +R E R L LE+ S E L ++ + + S++ + E
Sbjct: 61 STTNSGLQARQEAFTRKLDLEVSASSVGENINPCLPKPVTIATFKECLDQNGSRDLHKEG 120
Query: 120 --VGCHMKDG--SAHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSSPSL 175
H DG A+ ++ EL+ F T FLSLYCS + S SP K + KR SS S
Sbjct: 121 VAAEAHATDGLHCANQKDNSELRDFATSFLSLYCSGLQSVVGSPPHQKANELKRRSSSSS 180
Query: 176 LGGEDNKIAKKKYC----------VSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPN 225
L +D + + K+ C ++N L S ++ N N +++ S K
Sbjct: 181 LA-QDIQSSHKRRCESENIPSLDDLANPLGSKPESLARNGDNRDKSVSDHTKKM------ 233
Query: 226 SSQRVTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFS 285
SN + + LRKC K+ +S+ + T +TP S +K+ TPKS G+S+FS
Sbjct: 234 ------PSNEYVEIPMGLRKCSKAPESSAHLTEFHTP-GSAIKSCPVGTPKSGSGSSMFS 286
Query: 286 PGEAFWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSKEMLNE 345
PG++FWNEAI++ADG + S + D I + N +K K L+
Sbjct: 287 PGDSFWNEAIQVADGLTIPIENSGSV---KVKDGDQHGTILSCSNKTDKCNEMLKRSLDL 343
Query: 346 GDSKVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKG-TKPGCGAADTSE 404
+S+V A G K + K D KE+SPLP+K+L+ LF+DKN+ G + C + D +
Sbjct: 344 DESRVNDKDAIGFSKVLEKHGRDFNKEVSPLPVKNLELLFQDKNINGGLREQCASFDQNN 403
Query: 405 AMMFRDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQ 464
+ +SE V +K C+ + + + E VL+ E +
Sbjct: 404 -ITLGSSRISESAFVDNKGCETLDIVNSQADKGLIGKMYPEPEGKKVLLCEENR------ 456
Query: 465 GIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISK 524
G+ S++ S ++KPV + +S+E+ TPSSS D L LS+WLPSE+CS+Y K+GISK
Sbjct: 457 GVRSVSMISN---MRKPVDSSESEESHTPSSSHRNYDGLILSTWLPSEVCSVYNKKGISK 513
Query: 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584
LYPWQVECL VDGVLQ+RNLVYCASTSAGKSFVAE+LMLRR+I+TGKMALLVLPYVSICA
Sbjct: 514 LYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVITTGKMALLVLPYVSICA 573
Query: 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644
EKAEHLEVLLEPLG+HVRSYYGNQGGG+LPK TSVAVCTIEKANSL+NR+LEEGRLSE+G
Sbjct: 574 EKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKGTSVAVCTIEKANSLINRLLEEGRLSELG 633
Query: 645 IIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVG 704
IIVIDELHMV DQ+RGYLLEL+LTKLRYAAGEG+S+SSSGE+SG SSGKADPAHGLQIVG
Sbjct: 634 IIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGNSSGKADPAHGLQIVG 693
Query: 705 MSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKD 764
MSATMPNV AVADWLQAALY+T FRPVPLEEYIKVG+ IY+KKM+VVRTI AA++GGKD
Sbjct: 694 MSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKD 753
Query: 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAI 824
PDHIVELC+EVVQEG+SVLIFCSSRKGCESTARH+SK +KK I+V +SEF+DI SAI
Sbjct: 754 PDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKKVPIDVDGKNSEFMDIRSAI 813
Query: 825 DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884
DALRR P+G+DPVLEETLPSGVAYHHAGLTVEERE+VETCYRKGLVRVLTATSTLAAGVN
Sbjct: 814 DALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVN 873
Query: 885 LPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
LPARRVIFRQP IGRDFIDGTRY+QM+GRAGRTGIDTKGES+LICKP E+K+IM LLNE+
Sbjct: 874 LPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGESVLICKPGELKRIMALLNET 933
Query: 945 CPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSL 1004
CPPL SCLSEDKNGMTHAILEVVAGGIVQTA+DIHRYVRCTLLNSTKPFQDVVKSAQDSL
Sbjct: 934 CPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPFQDVVKSAQDSL 993
Query: 1005 RWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLV 1064
RWLCHRKFLEWNE+TKLY+TTPLGR +FGSSLCPEESLIVLDDL RAREG V+ASDLHLV
Sbjct: 994 RWLCHRKFLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDLHLV 1053
Query: 1065 YLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDS 1124
YL TPINV VEP+WELYYERF+ELS L+QSVGN+VGV EP+LMRMAHGA +R +K +D
Sbjct: 1054 YLVTPINVGVEPNWELYYERFMELSPLEQSVGNRVGVVEPFLMRMAHGATVRTINKPQDV 1113
Query: 1125 TKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGM 1184
K L G+ + R G TS MLSD Q LRVCKRF+VALILS+LVQE V EVCE FKVARGM
Sbjct: 1114 KKNLRGEYDNRHGSTSMKMLSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGM 1173
Query: 1185 VQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244
VQALQENAGRF+SMVSVFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELT+IPY+KGSRA
Sbjct: 1174 VQALQENAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRA 1233
Query: 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAE--AQRRVQLGVAKKIKNGARKIVLE 1302
RALYKAGLRT AIAEASI EIVKALFESS+W AE QRR+ LG+AKKIKNGARKIVLE
Sbjct: 1234 RALYKAGLRTSQAIAEASIPEIVKALFESSAWAAEGTGQRRIHLGLAKKIKNGARKIVLE 1293
Query: 1303 KAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPM 1362
KAEEAR AAFSAFKSLGL+V + S+P+ + G+E T R D S + P +
Sbjct: 1294 KAEEARAAAFSAFKSLGLDVHELSKPLPLAPASSPNGQE----TTER-DISRGSVGPDGL 1348
Query: 1363 EHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFV 1422
+ S K +E + D+++ EK E L E + L P
Sbjct: 1349 QQSIKVHMEC----ENFDMDNHREKPSEVLGATLGVSSEVNMTSRL-----------PNF 1393
Query: 1423 GPGTGGVEFNVNASEIKIPDTTLSVQLGKN-AIGTITSNRDLDLEVQDRPNRDPCLVNKD 1481
GP V N ++ + TL + + N I T+ + V+ R+ NKD
Sbjct: 1394 GPIGTTVGTNGPSAVSILSSDTLPIPVYDNREIKTVDN-------VEQHLTRN---ANKD 1443
Query: 1482 RACNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENS 1541
KGPI A N SGGFD FL+ WE+ EF+FD+HY+K + NS + +EIHG+A+CW +S
Sbjct: 1444 GTGEKGPITAGNISGGFDSFLELWESAGEFFFDLHYNKLQDLNSRISYEIHGIAICWNSS 1503
Query: 1542 PVYYVNLPKDLWS-DHRRKDRFLIYGSSDKN-VLTPEHQLEMIKQRWKRIGEIMEKRDVR 1599
PVYYVNL KDL + + K + + KN VL + ++IK RW +I +IM + R
Sbjct: 1504 PVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVLATHNMFDVIKSRWNKISKIMGNVNTR 1563
Query: 1600 KFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVS 1659
KFTWN+KVQIQVLK A+SIQR LNL LE V S+L++ P+ IDM IV+
Sbjct: 1564 KFTWNLKVQIQVLKSPAISIQRCNRLNLAEGIRDLELVDGSWLMMPPLRTSHTIDMSIVT 1623
Query: 1660 WILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALC 1719
WILWPD+ER SNPN++KEVKKRLS EAA AANRSGRW+NQ+RR AHNGCCRRVAQTRALC
Sbjct: 1624 WILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALC 1683
Query: 1720 SVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKA 1779
S LWK+LVSEEL+EAL E+PLVNVLADMELWGIGVD+EGCL+ARN+L+ KLR LEKKA
Sbjct: 1684 SALWKILVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKA 1743
Query: 1780 YTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIK 1839
+ LAGM FSL+ ADIANVL+G LKLPIPE +KGK HPSTDKHCLDLLR+EHP+VP+IK
Sbjct: 1744 FELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIK 1803
Query: 1840 EHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVE 1899
EHRTLAKLLNCTLGSICSLA++ +STQ+YTLHG WLQTSTATGRLS+EEPNLQ VEH VE
Sbjct: 1804 EHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVE 1863
Query: 1900 FKM--SNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALI 1957
F + + +D+ N++ D KINARDFF+P+QENW+LL ADYSQIELRLMAHFS+D +LI
Sbjct: 1864 FILDKNGKDV---NSDADSYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLI 1920
Query: 1958 GLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNE 2017
L +P GDVFTMIAA+WTG++E SV +RDQTKRLIYGILYGMG N L+EQL CSS+E
Sbjct: 1921 SQLRQPEGDVFTMIAAKWTGKAEGSVSPHDRDQTKRLIYGILYGMGANRLAEQLECSSDE 1980
Query: 2018 AKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQA 2077
AKEKI+SFKSSFP V SWL+ +S C +KGY+++LKGR+RFLSKIKFGN KEKSKAQRQA
Sbjct: 1981 AKEKIRSFKSSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQA 2040
Query: 2078 VNSICQGSAADIIKIAMINIHSIIVGGV--YKPDSSLAANFQMLKGRCRLLLQVHDELVL 2135
VNS+CQGSAADIIKIAMINI+S I V SS F MLKGRCR+LLQVHDELVL
Sbjct: 2041 VNSMCQGSAADIIKIAMINIYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVL 2100
Query: 2136 EVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQAD 2182
EVDPS +K A L+Q ME+A LLVPL VK++VG TWGSLEPFQAD
Sbjct: 2101 EVDPSYVKVAAMLLQTSMENAVSLLVPLHVKLKVGKTWGSLEPFQAD 2147
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334203|ref|NP_001078482.1| DNA polymerase theta subunit [Arabidopsis thaliana] gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2570 bits (6661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1379/2216 (62%), Positives = 1657/2216 (74%), Gaps = 96/2216 (4%)
Query: 1 MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
M S S ++RIDQFY SKKRK +SP++KSGR EK+ K+T E SP KGTLD+YLK S DD
Sbjct: 1 MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDSYLKASLDDK 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSE- 119
T+ L +R E R L LE+ S + L ++ + + S++ + E
Sbjct: 61 STTNSGLQARQEAFTRKLDLEVSASSVGQNIHPCLPKPVSFATFKECLGQNGSQDLHKEG 120
Query: 120 --VGCHMKDG--SAHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSSPSL 175
H DG A+ ++ EL+ F T FLSLYCS + S SP K + KR SS S
Sbjct: 121 VAAETHATDGLLCANQKDNSELRDFATSFLSLYCSGVQSVVGSPPHQKENELKRRSSSSS 180
Query: 176 LGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTD--- 232
L +D +I+ K+ C S + S + T N ++ + + GN N + V+D
Sbjct: 181 LA-QDIQISHKRRCESENIPSLDDLT-----NPLGSKPESLARNGN---NRDKPVSDPTK 231
Query: 233 ---SNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEA 289
SN S+ + LRKC K+ +S+ + T +TP S +K+ TPKS CG+S+FSPGEA
Sbjct: 232 KMPSNESVEIPMGLRKCSKAPESSAHLTEFHTPG-SAIKSCPVGTPKSGCGSSMFSPGEA 290
Query: 290 FWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNE---INNSYNLRNKNYNKSKEMLNEG 346
FWNEAI++ADG + G ++K +++ I + +K K + L+
Sbjct: 291 FWNEAIQVADGLTIPIE------NFGSVEAKVRDQHVTILSCSKKTDKCTEKLERSLDLD 344
Query: 347 DSKVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKG-TKPGCGAADTSEA 405
+ +V+ A G K + K D KE+ LP+K+L+ LF+DKN+ G + C + D +
Sbjct: 345 EIRVKDKDAIGFSKVVEKHGRDFNKEVYQLPVKNLELLFQDKNINGGIQERCASFDQNN- 403
Query: 406 MMFRDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQ----EKDSVLIVHERKLDI 461
+ +SE V +K C+ + +N +G+ E VL+ E +
Sbjct: 404 ITLGSSRISESAFVGNKGCENLDIA---NNAQADKGLIGKMYPEPEGKKVLLCEENR--- 457
Query: 462 SSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRG 521
G+ S++ S ++KPVG+ +S+E+ TPSSS D L LS+WLPSE+CS+Y K+G
Sbjct: 458 ---GVRSVSMISN---MRKPVGSSESEESHTPSSSHRNYDGLSLSTWLPSEVCSVYNKKG 511
Query: 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVS 581
ISKLYPWQVECL VDGVLQ+RNLVYCASTSAGKSFVAE+LMLRR+I TGKMALLVLPYVS
Sbjct: 512 ISKLYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVS 571
Query: 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLS 641
ICAEKAEHLEVLLEPLG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEEGRLS
Sbjct: 572 ICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLS 631
Query: 642 EIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQ 701
E+GIIVIDELHMV DQ+RGYLLEL+LTKLRYAAGEG+S+SSSGE+SGTSSGKADPAHGLQ
Sbjct: 632 ELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGLQ 691
Query: 702 IVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLG 761
IVGMSATMPNV AVADWLQAALY+T FRPVPLEEYIKVG+ IY+KKM+VVRTI AA++G
Sbjct: 692 IVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMG 751
Query: 762 GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821
GKDPDHIVELC+EVVQEG+SVLIFCSSRKGCESTARH+SK +K +NV +SEF+DI
Sbjct: 752 GKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIR 811
Query: 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAA 881
SAIDALRR P+G+DPVLEETLPSGVAYHHAGLTVEERE+VETCYRKGLVRVLTATSTLAA
Sbjct: 812 SAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAA 871
Query: 882 GVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941
GVNLPARRVIFRQP IGRDFIDGTRY+QM+GRAGRTGIDTKG+S+LICKP E+K+IM LL
Sbjct: 872 GVNLPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALL 931
Query: 942 NESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQ 1001
NE+CPPL SCLSEDKNGMTHAILEVVAGGIVQTA+DIHRYVRCTLLNSTKPFQDVVKSAQ
Sbjct: 932 NETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPFQDVVKSAQ 991
Query: 1002 DSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061
DSLRWLCHRKFLEWNE+TKLY+TTPLGR +FGSSLCPEESLIVLDDL RAREG V+ASDL
Sbjct: 992 DSLRWLCHRKFLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDL 1051
Query: 1062 HLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKL 1121
HLVYL TPINV VEP+WELYYERF+ELS L+QSVGN+VGV EP+LMRMAHGA +R ++
Sbjct: 1052 HLVYLVTPINVGVEPNWELYYERFMELSPLEQSVGNRVGVVEPFLMRMAHGATVRTLNRP 1111
Query: 1122 RDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVA 1181
+D K L G+ + R G TS MLSD Q LRVCKRF+VALILS+LVQE V EVCE FKVA
Sbjct: 1112 QDVKKNLRGEYDSRHGSTSMKMLSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVA 1171
Query: 1182 RGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKG 1241
RGMVQALQENAGRF+SMVSVFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELT+IPY+KG
Sbjct: 1172 RGMVQALQENAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKG 1231
Query: 1242 SRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAE--AQRRVQLGVAKKIKNGARKI 1299
SRARALYKAGLRT AIAEASI EIVKALFESS+W AE QRR+ LG+AKKIKNGARKI
Sbjct: 1232 SRARALYKAGLRTSQAIAEASIPEIVKALFESSAWAAEGTGQRRIHLGLAKKIKNGARKI 1291
Query: 1300 VLEKAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFP 1359
VLEKAEEAR AAFSAFKSLGL+V + S+P+ + G+E T R D S + P
Sbjct: 1292 VLEKAEEARAAAFSAFKSLGLDVNELSKPLPLAPASSLNGQE----TTER-DISRGSVGP 1346
Query: 1360 VPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPV 1419
++ S+E + + D+++ EK E + + ++T F V
Sbjct: 1347 DGLQQ----SIEGHMECENFDMDNHREKPSEVLGDATLGVSSEINLTSRLPNFRPIGTAV 1402
Query: 1420 PFVGPGTGGVEFNVNASEIKIPDTTLSVQLGKNAIGTITSNRDLDLE--VQDRPNRD--- 1474
GP + +++ IP + NR++ + V+ R+
Sbjct: 1403 GTNGPSAVSI---LSSDTFPIP---------------VYDNREIKPKDNVEQHLTRNDHI 1444
Query: 1475 PCLVNKDRACNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGL 1534
P NKD KGP+ A N SGGFD FL+ W + EF+FD+HY+K + NS + +EIHG+
Sbjct: 1445 PLSSNKDGTGEKGPVTAGNISGGFDSFLELWGSAGEFFFDLHYNKLQDLNSRISYEIHGI 1504
Query: 1535 AVCWENSPVYYVNLPKDLWS-DHRRKDRFL---IYGSSDKNVLTPEHQLEMIKQRWKRIG 1590
A+CW SPVYYVNL KDL + + K + + + G S+ VL + L++IK RW +I
Sbjct: 1505 AICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSE--VLASHNMLDVIKSRWNKIS 1562
Query: 1591 EIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLK 1650
+IM + RKFTWN+KVQIQVLK A+SIQR LNL + E V S+L++ P+H
Sbjct: 1563 KIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNL-PEGIRDELVDGSWLMMPPLHTS 1621
Query: 1651 DGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCR 1710
IDM IV WILWPD+ER SNPN++KEVKKRLS EAA AANRSGRW+NQ+RR AHNGCCR
Sbjct: 1622 HTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCR 1681
Query: 1711 RVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQK 1770
RVAQTRALCS LWK+LVSEEL++AL IE+PLVNVLADMELWGIG+D+EGCL+ARN+L+
Sbjct: 1682 RVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRD 1741
Query: 1771 KLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRH 1830
KLR LEKKA+ LAGM FSL+ ADIANVL+G LKLPIPE +KGK HPSTDKHCLDLLR+
Sbjct: 1742 KLRSLEKKAFELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRN 1801
Query: 1831 EHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPN 1890
EHP+VP+IKEHRTLAKLLNCTLGSICSLA++ +STQ+YTLHG WLQTSTATGRLS+EEPN
Sbjct: 1802 EHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPN 1861
Query: 1891 LQCVEHMVEFKM--SNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMA 1948
LQ VEH VEFK+ + D+ +++ D KINARDFF+P+QENW+LL ADYSQIELRLMA
Sbjct: 1862 LQSVEHEVEFKLDKNGRDV---SSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMA 1918
Query: 1949 HFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLS 2008
HFS+D +LI LS+P GDVFTMIAA+WTG++EDSV +RDQTKRLIYGILYGMG N L+
Sbjct: 1919 HFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLA 1978
Query: 2009 EQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNK 2068
EQL C+S+EAKEKI+SFKSSFP V SWL+ +S C +KGY+++LKGR+RFLSKIKFGN K
Sbjct: 1979 EQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAK 2038
Query: 2069 EKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGV--YKPDSSLAANFQMLKGRCRLL 2126
EKSKAQRQAVNS+CQGSAADIIKIAMINI+S I V SS F MLKGRCR+L
Sbjct: 2039 EKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRIL 2098
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQAD 2182
LQVHDELVLEVDPS +K A L+Q ME+A LLVPL VK++VG TWGSLEPFQ D
Sbjct: 2099 LQVHDELVLEVDPSYVKLAAMLLQTSMENAVSLLVPLHVKLKVGKTWGSLEPFQTD 2154
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436569|ref|XP_003588560.1| DNA polymerase I family protein expressed [Medicago truncatula] gi|355477608|gb|AES58811.1| DNA polymerase I family protein expressed [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2529 bits (6556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1335/2135 (62%), Positives = 1578/2135 (73%), Gaps = 178/2135 (8%)
Query: 161 EAKLKDHKRHSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTG 220
+ ++K HK++ S +L+ E++ +K +++L G + S ++ +SG T
Sbjct: 203 KTRVKGHKKYDSLTLV--EESSSIPQKCDDTSVLHFGCENISSEKITVD-MKSGVAGNTL 259
Query: 221 NLVPNSSQRVTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCG 280
+P S +V+D A+ RKC +S S +N C TP IVK +R TPKST G
Sbjct: 260 ESIPGCSAKVSDGGATNAFDTGFRKCSNTSTS-MNMAECQTPGSLIVKACIRGTPKSTRG 318
Query: 281 NSIFSPGEAFWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSK 340
+S+FSPGEAFW+EAI++ADG T S++ E Q E+ S NL+N + K++
Sbjct: 319 SSMFSPGEAFWDEAIQLADGLVVPTGNDASKVIEESNVVGDQVEMKGSCNLQNYD-GKAR 377
Query: 341 EMLNEGDSKVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFE---DKNL------- 390
++L++ + L +M DS+KE S LP+KH DF + D+N+
Sbjct: 378 KILDQSKNI--------GLAEMHTK--DSMKEASSLPVKHFDFSNDHNMDENILQNCRVD 427
Query: 391 KGTKPGCGAADTSEAMMFRDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDS 450
CG+ E + VVS TH+ ++K K D +
Sbjct: 428 NQVNVTCGSGRKYEPI----SVVSR----THEQPYEVK-KILADELGK------------ 466
Query: 451 VLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLP 510
++ + + S SP N + + S EA TPSS+ L + LDL SWL
Sbjct: 467 -------RMRKDNSNMTSNNFSSPNNEARTTLSIHASFEATTPSSNVSLDNHLDLHSWLQ 519
Query: 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG 570
EICSIY+K+GISKLY WQV+CL VDGVLQRRNLVYCASTSAGKSFVAEILMLR++I+TG
Sbjct: 520 PEICSIYRKKGISKLYNWQVDCLRVDGVLQRRNLVYCASTSAGKSFVAEILMLRKVITTG 579
Query: 571 KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSL 630
KMA+LVLPYVSIC EKAEHLE LLEPLG+HVRSYYGNQGGGSLPKDTSVAVCTIEKANSL
Sbjct: 580 KMAILVLPYVSICTEKAEHLEKLLEPLGKHVRSYYGNQGGGSLPKDTSVAVCTIEKANSL 639
Query: 631 VNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTS 690
+NR+LEEGRLSE+GIIVIDELHMV D RGYLLEL+LTKLRYAAGEG S SS GE SG S
Sbjct: 640 INRLLEEGRLSEMGIIVIDELHMVGDPKRGYLLELMLTKLRYAAGEGISKSSDGEGSGGS 699
Query: 691 SGKADPAHGLQIVGMSATMPNVAAVADWLQ------------------AALYETNFRPVP 732
S K DPA GLQIVGMSATMPNVAAVADWLQ AALY+T FRPVP
Sbjct: 700 SDKNDPAQGLQIVGMSATMPNVAAVADWLQSIFSLQVLINLSVPNCIKAALYQTEFRPVP 759
Query: 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGC 792
LEEYIKVGN+IY+K M++ RTI A+LGGKDPDH+VELC+EVVQEG SVLIFCSSRKGC
Sbjct: 760 LEEYIKVGNSIYNKSMELSRTIPKGADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGC 819
Query: 793 ESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAG 852
ESTARHV+KFLK F+++++ ++ EF DITSAI++LR+CPAGLDPVLEET P+GVA+HHAG
Sbjct: 820 ESTARHVAKFLKSFTVDINENNCEFADITSAINSLRKCPAGLDPVLEETFPAGVAFHHAG 879
Query: 853 LTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAG 912
LTVEERE+VETCYRKGL+RVLTATSTLAAGVNLPARRVIFRQPRIG DFIDGTRY QMAG
Sbjct: 880 LTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFIDGTRYMQMAG 939
Query: 913 RAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIV 972
RAGRTGIDTKGES+LICKP+E+KK+MGLLNESCPPLHSCLSED NGMTHAILEVVAGGIV
Sbjct: 940 RAGRTGIDTKGESVLICKPQELKKVMGLLNESCPPLHSCLSEDLNGMTHAILEVVAGGIV 999
Query: 973 QTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAF 1032
QTA DIHRYVRCTLLNSTKPF DVVKSAQ+SLRWLC RKFLEWNEDTKLYSTTPLGRA+F
Sbjct: 1000 QTANDIHRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASF 1059
Query: 1033 GSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALD 1092
GSSLCPEESLIVL DLSRAREGFVLASDLHLVYL TPINV+VEPDWE YYERF++LS LD
Sbjct: 1060 GSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWESYYERFVKLSPLD 1119
Query: 1093 Q--------------------SVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKL 1132
Q SVGN+VGV+EP+LMRMAHG PM S+K R S + K
Sbjct: 1120 QVKINFPVLVFQPTMLLDLLRSVGNRVGVTEPFLMRMAHGVPMG-SNKSRWS----NNKR 1174
Query: 1133 EYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENA 1192
+ + G++S + SD QTLRVCKRFYVALILS LVQETPV EVCE FKVARGMVQ LQENA
Sbjct: 1175 QNQHGMSSGIVNSDDQTLRVCKRFYVALILSLLVQETPVGEVCEAFKVARGMVQGLQENA 1234
Query: 1193 GRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGL 1252
GRFASMV+VFCERLGW+D EGL+AKFQNRVSFGVRAE+VELTTIPYVKGSRARALYKAGL
Sbjct: 1235 GRFASMVAVFCERLGWHDFEGLVAKFQNRVSFGVRAEVVELTTIPYVKGSRARALYKAGL 1294
Query: 1253 RTPLAIAEASISEIVKALFESSSWIAE--AQRRVQLGVAKKIKNGARKIVLEKAEEARIA 1310
RTPLAIAEASI E+VKALFESSSW E AQR +Q GVAKKIKNGARKIVL+KAEEARIA
Sbjct: 1295 RTPLAIAEASIPELVKALFESSSWGTEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARIA 1354
Query: 1311 AFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRN-DKSSSFIFPVPMEHSDKPS 1369
AFSAFKSLG +VPQF+ PI STA NS +E +++ D S SFI +++S+ P+
Sbjct: 1355 AFSAFKSLGYDVPQFAPPI-STAVCNSIRKEVGSSSGSDTADTSHSFIDTNHIDNSNVPA 1413
Query: 1370 LEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFVGPGTGGV 1429
LE + L+++SDN VEG S + + VP V P
Sbjct: 1414 LEKEK------------DLIKSSDNGALVSVEGKSDSVMPHSLST----VPVVVPSIN-- 1455
Query: 1430 EFNVNASEIKIPD-TTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPC----LVNKDRAC 1484
E ++ + KIPD TTLSV L K +I N ++ +R ++N R
Sbjct: 1456 ELSMTSGPAKIPDVTTLSVHLQKQNDKSIMHNGCHAQGTGEQDHRGNLASGNMINSSR-- 1513
Query: 1485 NKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVY 1544
KGPINA+++ GG D FLD W+ EFYFDIHY K E +S FE+HG+A+CWENSP+Y
Sbjct: 1514 -KGPINAVSSPGGLDSFLDLWDTVAEFYFDIHYIKRLELHSAAPFEVHGIAICWENSPMY 1572
Query: 1545 YVNLPKD-LWSDHRRKDRFLIYGSSDKNVLT---PEHQLEMIKQRWKRIGEIMEKRDVRK 1600
Y+NLP+D L S +R+ D F + S K ++ + L RW RI +I+EK++VRK
Sbjct: 1573 YINLPRDILLSGNRKDDGFSLTACSSKQKVSSSNSKQDLMNAMHRWSRISKIIEKKEVRK 1632
Query: 1601 FTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSW 1660
FTWN+KVQIQVLK +VS+QRFG L+ + ++ LE V +S++LL P+H+KD IDMCIV+W
Sbjct: 1633 FTWNLKVQIQVLKKPSVSVQRFGSLDTIDKNMHLEVVDNSYILLPPIHVKDAIDMCIVAW 1692
Query: 1661 ILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCS 1720
ILWPD+E SS+PNL+KEVKKRLS E AAAAN+ GRW+NQMR+AAHNGCCRRVAQTRALCS
Sbjct: 1693 ILWPDEESSSSPNLDKEVKKRLSPEDAAAANQCGRWRNQMRKAAHNGCCRRVAQTRALCS 1752
Query: 1721 VLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAY 1780
VLWKLLVSE+L+EAL+ IEIPLVNVLADMELWGIGVD+EGC+QAR LL K+L+ LEK+AY
Sbjct: 1753 VLWKLLVSEKLVEALMEIEIPLVNVLADMELWGIGVDLEGCIQARKLLVKRLKQLEKEAY 1812
Query: 1781 TLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKE 1840
LAGM FSL ADIA VL+ HLKLPIP+G NKGK HPST KHCLD LR+EHPIVP+IKE
Sbjct: 1813 KLAGMTFSLSMPADIAKVLFEHLKLPIPDGKNKGKNHPSTGKHCLDALRNEHPIVPIIKE 1872
Query: 1841 HRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEF 1900
HRTLAKLLN TLGSICSLAR+S+STQKYTLHGHWLQTSTATGRLSMEEPNLQCVEH V+F
Sbjct: 1873 HRTLAKLLNSTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVDF 1932
Query: 1901 KMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLL 1960
KM N D G+A+ + C++NARD+F+P+Q+NW+LL ADYSQIELRLMAHFSKD LI LL
Sbjct: 1933 KM-NGDKNEGDAD-ESCRVNARDYFVPTQDNWLLLTADYSQIELRLMAHFSKDSTLIELL 1990
Query: 1961 SKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKE 2020
KP GDVFTMIAARW G E SVGS++R+QTK+++YGILYGMGPN+L+EQ++C+S+EA E
Sbjct: 1991 RKPDGDVFTMIAARWIGCPEVSVGSRQREQTKKMVYGILYGMGPNSLAEQMDCTSDEASE 2050
Query: 2021 KIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNS 2080
+I +FKS+FPGVASWLH AV+ C KGYVE+LKGRKRFLSKIKFG++ EKSKAQRQAVNS
Sbjct: 2051 RISNFKSTFPGVASWLHEAVAFCRSKGYVETLKGRKRFLSKIKFGSSTEKSKAQRQAVNS 2110
Query: 2081 ICQGSAADIIKIAMINIHSIIVGGVYKPD--SSLAANFQMLKGRCRLLLQVHDELVLEVD 2138
ICQGSAADIIKIAMI I+S I GV K D SS+ A F+ML+ RCR+LLQVHDELVLEVD
Sbjct: 2111 ICQGSAADIIKIAMIKIYSEIFPGVDKLDSSSSVTAKFEMLRDRCRILLQVHDELVLEVD 2170
Query: 2139 PSVIKEAVSLVQKCMESAALLL-------------------------------------- 2160
PSV+KEA L+Q ME+A LL
Sbjct: 2171 PSVVKEAALLLQTSMENAVSLLGLYSLNKLFFWPFLFGCRHKLVKVIEDLTVWSNHIFTV 2230
Query: 2161 ------VPLLVKIQVGSTWGSLEPFQADNYTNVVP 2189
VPL VK++VG TWGSLEPF D +T P
Sbjct: 2231 YAYASAVPLNVKLKVGRTWGSLEPFAPDKFTGDTP 2265
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522155|ref|XP_004168093.1| PREDICTED: DNA polymerase theta-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2349 bits (6088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1194/1652 (72%), Positives = 1356/1652 (82%), Gaps = 73/1652 (4%)
Query: 552 AGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611
AGKSFVAEILMLRR+ISTGKMALLVLPYVSICAEKA HL+VLLE LG+HVRSYYGNQGGG
Sbjct: 1 AGKSFVAEILMLRRVISTGKMALLVLPYVSICAEKAAHLDVLLESLGKHVRSYYGNQGGG 60
Query: 612 SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671
+LPKDTSVAVCTIEKANSL+NR+LEE RLSEIGIIVIDELHMV DQ RGYLLELLLTKLR
Sbjct: 61 TLPKDTSVAVCTIEKANSLINRLLEECRLSEIGIIVIDELHMVGDQTRGYLLELLLTKLR 120
Query: 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPV 731
YAAGEG DSSSGE+SGTSSGK+DPAHG+QIVGMSATMPNVAAVADWLQAALY T+FRPV
Sbjct: 121 YAAGEGNLDSSSGESSGTSSGKSDPAHGIQIVGMSATMPNVAAVADWLQAALYHTDFRPV 180
Query: 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKG 791
PLEEYIKVGN IY+K +D+VRTI ANLGG+DPDHIVELC+EVV++GHSVLIFCSSRKG
Sbjct: 181 PLEEYIKVGNTIYNKSLDIVRTISKTANLGGRDPDHIVELCNEVVEDGHSVLIFCSSRKG 240
Query: 792 CESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHA 851
CESTA+HVSKFLKKFS+ + + +SEF DI SAIDALRRCP+GLDPVLEET PSGVAYHHA
Sbjct: 241 CESTAKHVSKFLKKFSVKIQNDNSEFTDIFSAIDALRRCPSGLDPVLEETFPSGVAYHHA 300
Query: 852 GLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMA 911
GLTVEEREVVETCYRKGL+RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDG RYRQMA
Sbjct: 301 GLTVEEREVVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGARYRQMA 360
Query: 912 GRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGI 971
GRAGRTGIDTKGES+LIC+PEEVK+I LLNESCPPL SCLSEDKNGMTHAILEVVAGGI
Sbjct: 361 GRAGRTGIDTKGESVLICRPEEVKRINELLNESCPPLQSCLSEDKNGMTHAILEVVAGGI 420
Query: 972 VQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAA 1031
VQTA DIHRYVRCTLLNSTKPFQDVVKSAQ+SLRWLCH KFLEWN DTKLYSTTPLGRA+
Sbjct: 421 VQTATDIHRYVRCTLLNSTKPFQDVVKSAQESLRWLCHGKFLEWNGDTKLYSTTPLGRAS 480
Query: 1032 FGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSAL 1091
FGSSL PEESLIVLDDLSRAREGFVLASDLHLVYL TPINV+VEPDWELYYE F+ LS+L
Sbjct: 481 FGSSLSPEESLIVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYELFMGLSSL 540
Query: 1092 DQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLR 1151
DQSVGN+VG +EP+LMRMAHGAP+R ++ R+ GL K + +G+ + S+ QT+R
Sbjct: 541 DQSVGNRVGATEPFLMRMAHGAPVRRANISRNGVAGLRTKRDEHVGVYGDRP-SEEQTIR 599
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDL 1211
VCKRFYVALILSRLVQETP+ EVC+ FKVARGMVQALQE+AGRFASMVSVFCERLGW+DL
Sbjct: 600 VCKRFYVALILSRLVQETPIPEVCDAFKVARGMVQALQESAGRFASMVSVFCERLGWHDL 659
Query: 1212 EGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271
EGL+AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEAS +E+VKAL
Sbjct: 660 EGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASDAELVKALS 719
Query: 1272 ESSSWIAE--------AQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNVP 1323
ES+SW E AQ+R+ +G+A+KIK+GARK+VL+KAEEARIAAFSAFKSLG VP
Sbjct: 720 ESASWTTEGERCDYFTAQKRMHVGLARKIKHGARKVVLDKAEEARIAAFSAFKSLGFTVP 779
Query: 1324 QFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLES 1383
Q S P+ ++A N T + T +E V S
Sbjct: 780 QISHPLSASADGNITAQVAVGTQ----------------------QMERVLTLSCVGGTS 817
Query: 1384 AGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFVGPGTGGVEFNVNASEIKIPDT 1443
+ EK++ + ++ A+ +++Q NPP VNA I D+
Sbjct: 818 SSEKVVGKNPSQTGAIS-----IDVKQSNSGVNPP--------------VNAEGSAIQDS 858
Query: 1444 TLSVQLGKNAIGTITSN--RDLDLEVQDRPNRDPCL--VNKDRACNKGPINAINASGGFD 1499
+ I+S+ R D + Q + L + +D + KGPI A + SGGF+
Sbjct: 859 NTVGECAGKVDVAISSHLERITDKDAQREQHSSKVLHSLKRDGSSMKGPIQAASTSGGFE 918
Query: 1500 CFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRK 1559
FL+ W+A+ EFYFD++Y K SE NS V FE+HG+A+CWE SPVYYVN+PKDL K
Sbjct: 919 SFLNLWDASQEFYFDLYYTKRSEVNSVVPFELHGIAICWEKSPVYYVNIPKDLLGPKSGK 978
Query: 1560 ----DRFLIYGSSDK-NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH 1614
D + S D+ +V EH EMI+ RWK+I EI K++VRKF WN+KVQ+QVLK
Sbjct: 979 GLCPDDSI---SGDQVDVSQNEHWFEMIEMRWKKINEIFTKKNVRKFAWNLKVQVQVLKC 1035
Query: 1615 AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNL 1674
VSIQ+ G LN ++GL+ V S+++LS VH+ + IDMCIV+WILWPDDER+S NL
Sbjct: 1036 PGVSIQKLGFLNSARRNMGLKLVDGSYIVLSRVHMSNVIDMCIVAWILWPDDERNSTLNL 1095
Query: 1675 EKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEA 1734
EKEVKKRLS EAAAAANRSG+WKNQMRR AHNGCCRRVAQTRALCSVLWKL++SE+L++A
Sbjct: 1096 EKEVKKRLSGEAAAAANRSGQWKNQMRRVAHNGCCRRVAQTRALCSVLWKLIISEKLLDA 1155
Query: 1735 LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAAD 1794
L NIEIPLV +LADME WGIGVDMEGC++ARNLL KKLR LEK+AY LAGM FSLY AAD
Sbjct: 1156 LNNIEIPLVGILADMETWGIGVDMEGCIRARNLLGKKLRCLEKEAYRLAGMTFSLYAAAD 1215
Query: 1795 IANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGS 1854
IANVLYGHLKL IPEG NKGKQHPSTDKHCLDLLR+EHPIVPVIKEHRTLAKL NCTLGS
Sbjct: 1216 IANVLYGHLKLSIPEGFNKGKQHPSTDKHCLDLLRNEHPIVPVIKEHRTLAKLFNCTLGS 1275
Query: 1855 ICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEV 1914
ICSLA++S TQKYTLHGHWLQTSTATGRLSMEEPNLQCVEH VEFKM NED +V
Sbjct: 1276 ICSLAKLSARTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVEFKM-NED------DV 1328
Query: 1915 DHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAAR 1974
DHCKINARDFFI +QENW+LL+ADYSQIELRLMAHFSKD LI LLS PHGDVFTMIAAR
Sbjct: 1329 DHCKINARDFFISTQENWLLLSADYSQIELRLMAHFSKDSLLIELLSIPHGDVFTMIAAR 1388
Query: 1975 WTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVAS 2034
WTG++EDS+GS ERDQTKRL+YGILYGMG +L+ QL CS +EA EKI+SFKSSFPGVAS
Sbjct: 1389 WTGKTEDSIGSHERDQTKRLVYGILYGMGAKSLALQLECSRDEAVEKIQSFKSSFPGVAS 1448
Query: 2035 WLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAM 2094
WLH AV+ C QKGYVE+LKGR+RFLSKI +KEKSKAQRQAVNSICQGSAADIIK+AM
Sbjct: 1449 WLHEAVAFCRQKGYVETLKGRRRFLSKINSPISKEKSKAQRQAVNSICQGSAADIIKLAM 1508
Query: 2095 INIHSIIVGGVYKPDSSL--AANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKC 2152
I+++S+I G PD ++ AAN +L+G CR++LQVHDELVLEVDPS +KEA SL+QK
Sbjct: 1509 IHVYSVI--GTDAPDLTVLPAANSNILRGHCRIVLQVHDELVLEVDPSFVKEAASLLQKS 1566
Query: 2153 MESAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
ME+AA LLVPL VK++VG TWGSLE F DN+
Sbjct: 1567 MENAASLLVPLQVKLKVGRTWGSLETFLPDNF 1598
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357150740|ref|XP_003575560.1| PREDICTED: uncharacterized protein LOC100823290 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 2137 bits (5537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1135/1994 (56%), Positives = 1394/1994 (69%), Gaps = 222/1994 (11%)
Query: 273 ETPKSTCGNSIFSPGEAFWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEI------- 325
+TPKS +S+ SPGE FWN AIE ADG A D GP + + + KS +
Sbjct: 201 QTPKS--ASSLVSPGEDFWNAAIEFADGISALADKGPRRAYHDVTEDKSSCPVALCSKTL 258
Query: 326 ----NNSYNLRNKNYNKSKEMLNEGDSKVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHL 381
+ ++ N + + ++E +KV+ + K SPLP+KHL
Sbjct: 259 PISGKDDFDCENTVGSNVTKQMDESSNKVELVATTRHHKNN-----------SPLPVKHL 307
Query: 382 DFLFEDK----NLKGTKPG---CGAADTSEAMMFRDGVVSEKGSVTHK--SCQKIKFKCH 432
+F ED+ +L+G + G G + + +D ++ H + I F H
Sbjct: 308 NFFHEDEIQVSSLEGKEKGGTFSGNVQVDQGKL-KDNCFPRMENLRHSVDDLKTITFDPH 366
Query: 433 HDNTSR--TEGISDVQEKDSVLIVHERKLDISSQGIDSITSD------------SPTNVI 478
++ +EG+ S ++ ++ +G + +D +
Sbjct: 367 TNSPIMIPSEGLFK-----SNMVGKGHSTEMGGEGCCMVKTDLNQLTHGETKSLPAYSNC 421
Query: 479 KKPVGNEKSD------EAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQ--- 529
+KP + +S E TP+SS LKD LSSWLP ++C++Y K+GIS+LYPWQ
Sbjct: 422 RKPCRDSQSKFASQRVEVSTPTSSVPLKDHSKLSSWLPPQLCAVYMKKGISELYPWQSPI 481
Query: 530 -------------------------VECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLR 564
VECL VDGVL++RNLVYCASTSAGKSFVAE+LMLR
Sbjct: 482 VNFISFNCSVFLYYLLPIMLTYQLQVECLLVDGVLEKRNLVYCASTSAGKSFVAEVLMLR 541
Query: 565 RLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTI 624
R++S+G +A+LVLPYVS+CAEKA HLE LLEPLGRHVRS+YGNQGGGSLPKDTSVAVCTI
Sbjct: 542 RILSSGNIAILVLPYVSLCAEKAAHLEQLLEPLGRHVRSFYGNQGGGSLPKDTSVAVCTI 601
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684
EKANSLVN++LE+GRLSE+GIIVIDELHMV DQ+RGYLLEL+LTKLRYAAGEG S+SSSG
Sbjct: 602 EKANSLVNKLLEDGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGNSESSSG 661
Query: 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ----------AALYETNFRPVPLE 734
ENS +SSGK HGLQI+GMSATMPNVAAVADWLQ AALY+T FRPVPLE
Sbjct: 662 ENSSSSSGKTGATHGLQIIGMSATMPNVAAVADWLQVRKLYFFCSYAALYQTTFRPVPLE 721
Query: 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCES 794
E+IKVGN ++ K M++VR + A+LGGKDPDHIVELC+EV+ EGHSVL+FCSSRKGCES
Sbjct: 722 EFIKVGNQLFDKDMNIVRVLPKVADLGGKDPDHIVELCNEVILEGHSVLLFCSSRKGCES 781
Query: 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854
TARH++K+LK ++ SEF D SA++AL+RCPAGLDPVLEETLP GVAYHHAGLT
Sbjct: 782 TARHIAKYLKVAYVHSKEVSSEFQDAASAVEALKRCPAGLDPVLEETLPCGVAYHHAGLT 841
Query: 855 VEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRA 914
VEERE+VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRA
Sbjct: 842 VEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRA 901
Query: 915 GRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQT 974
GRTGIDTKGES+L+CKPEEVK+I G++ CPPL SCLSEDKNGMTHAI+EVVAGGIVQT
Sbjct: 902 GRTGIDTKGESILVCKPEEVKRITGIIRSECPPLQSCLSEDKNGMTHAIMEVVAGGIVQT 961
Query: 975 AEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGS 1034
A DIHRYVRCTLLNSTKPF DVVKSAQDSLRWLCH++F+EWN DTK+YSTTPLGRA FGS
Sbjct: 962 ASDIHRYVRCTLLNSTKPFDDVVKSAQDSLRWLCHKRFVEWNNDTKIYSTTPLGRACFGS 1021
Query: 1035 SLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQS 1094
SL PEESL+VLDDLSRAREGFVLASDLHLVYL TP NV+VEPDWELYYERF++LS+L+QS
Sbjct: 1022 SLNPEESLVVLDDLSRAREGFVLASDLHLVYLVTPTNVDVEPDWELYYERFMQLSSLEQS 1081
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
VGN+VGV EP+LM MAHGA M + K + +T G +N L + Q+LRV K
Sbjct: 1082 VGNRVGVIEPFLMHMAHGAAMPVRGKSKKNTSG------------GSNSLINEQSLRVSK 1129
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL 1214
RFYVAL++SRL QE PV +VCE+FKVARG +QALQENAGRFASMV+ FC+RLGW DLEGL
Sbjct: 1130 RFYVALMISRLAQEIPVTDVCESFKVARGTIQALQENAGRFASMVAAFCQRLGWLDLEGL 1189
Query: 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESS 1274
+AKFQNRVSFGVRAEI ELT+IP+VKGSRARALY +GLRTP+ IAEAS+ +I KALFESS
Sbjct: 1190 VAKFQNRVSFGVRAEIAELTSIPFVKGSRARALYNSGLRTPVNIAEASVLQIAKALFESS 1249
Query: 1275 SWIAE---AQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNVPQFSRPILS 1331
+W + RR+QLG+AKK+KNGAR+IVLE+AE AR+AAFSAFKSLG+ VPQF+ P+L
Sbjct: 1250 TWSGQDDSGLRRMQLGIAKKVKNGARRIVLEEAEAARVAAFSAFKSLGVEVPQFTTPLLP 1309
Query: 1332 TATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLET 1391
A+E+S E T P D + + D + N VD ++ E L+E
Sbjct: 1310 -ASEDSPPRE--ITVPPGGDHAKCHESALGTHLGD----DINICFDYVDQRASTEILVE- 1361
Query: 1392 SDNELSALVEGGSITELQQKFDAENPPVPFVGPGTGGVEFNVNASEIKIPDTTLSVQLGK 1451
+ I+ +Q K + G+E NV+ + ++ + LS ++
Sbjct: 1362 ---------DIHPISLIQIK-------------ASEGIENNVSMATMQEEASPLSTEI-- 1397
Query: 1452 NAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGGFDCFLDRWEATHEF 1511
+ P+R+ KGP+NA + GGFD FLD+W + +EF
Sbjct: 1398 ---------------IDKLPSRN--------VAEKGPVNAYSFPGGFDSFLDQWSSVNEF 1434
Query: 1512 YFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKN 1571
FD+H+ + S S +FEI GLAVCWENSP+YY N PKDL + D I+
Sbjct: 1435 TFDLHFVRKSTKLSSAIFEILGLAVCWENSPIYYCNFPKDL-ATTSNNDSVQIW------ 1487
Query: 1572 VLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTS 1631
E +RW RI IM+++ V+K TWN+K+QIQ LK +S QR +L +
Sbjct: 1488 --------EEFNRRWSRIVGIMQQKSVKKMTWNLKIQIQALKSPCISCQRLARSHLDYKT 1539
Query: 1632 L-GLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAA 1690
L +E + S+ ++L P+ + +G+D+C+V+WILWPD+E + PNL+K VK+RL SEAAAAA
Sbjct: 1540 LNNIEVLDSTHVMLPPISVYNGLDICLVAWILWPDEESKAVPNLDKLVKRRLHSEAAAAA 1599
Query: 1691 NRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADME 1750
NR GRW+NQM +AAH+GCCRR AQTRAL SVL LLVS+ L + + +E PLVNVLADME
Sbjct: 1600 NRDGRWRNQMHKAAHDGCCRRAAQTRALGSVLRILLVSQNLNDLVETVEGPLVNVLADME 1659
Query: 1751 LWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEG 1810
LWGIG DME CL+AR+++ K+L+ LEK+AY L G FSL + ADIA++LY HLKLP+P+G
Sbjct: 1660 LWGIGADMEACLRARHIIIKRLKELEKEAYKLVGKSFSLNSNADIADILYTHLKLPVPKG 1719
Query: 1811 HNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTL 1870
KGK HPSTDK LD LR HPI+ VI++HRTLAKLLN TLGSICS A++ +Q++ +
Sbjct: 1720 IEKGKLHPSTDKQSLDHLRDLHPIISVIRDHRTLAKLLNGTLGSICSRAQLCSKSQRHII 1779
Query: 1871 HGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQE 1930
HG+WLQTSTATGRLSMEEPNL Q+
Sbjct: 1780 HGNWLQTSTATGRLSMEEPNL-------------------------------------QD 1802
Query: 1931 NWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQ 1990
NW+L+ ADYSQIELR MAHFSKDP LI LLSKP DVFTMIA+RW G+ E V S++RD
Sbjct: 1803 NWLLVTADYSQIELRFMAHFSKDPVLIELLSKPDVDVFTMIASRWIGKEESLVSSKDRDN 1862
Query: 1991 TKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVE 2050
TKR IYGILYGMG N+L+EQL CS EA +KI+SFK FPGV+SWLH AV+SC QKGYVE
Sbjct: 1863 TKRFIYGILYGMGANSLAEQLECSPEEAAQKIQSFKRFFPGVSSWLHAAVASCRQKGYVE 1922
Query: 2051 SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDS 2110
+L GR+RFLSKI GN+ EK+KAQRQAVNSICQGSAADIIK+AM+ +HS+I G DS
Sbjct: 1923 TLMGRRRFLSKITAGNSTEKAKAQRQAVNSICQGSAADIIKVAMLKVHSVITNGNCTVDS 1982
Query: 2111 --SLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQ 2168
L NF ++GRC L+LQVHDELVLEVDPS++ EA L+Q ME+AA LLVPL KI+
Sbjct: 1983 MNGLMHNFSEIRGRCHLILQVHDELVLEVDPSMVAEAGRLLQISMENAASLLVPLRTKIK 2042
Query: 2169 VGSTWGSLEPFQAD 2182
VG TWGSLEPFQ +
Sbjct: 2043 VGKTWGSLEPFQPE 2056
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2191 | ||||||
| TAIR|locus:2125677 | 2154 | AT4G32700 [Arabidopsis thalian | 0.617 | 0.627 | 0.604 | 0.0 | |
| ZFIN|ZDB-GENE-040724-232 | 2576 | si:rp71-1p14.5 "si:rp71-1p14.5 | 0.435 | 0.370 | 0.333 | 1.6e-183 | |
| UNIPROTKB|D4A628 | 2547 | Polq "Polymerase (DNA directed | 0.370 | 0.318 | 0.362 | 1.8e-179 | |
| RGD|1309795 | 2540 | Polq "polymerase (DNA directed | 0.228 | 0.197 | 0.434 | 4.8e-178 | |
| UNIPROTKB|O75417 | 2590 | POLQ "DNA polymerase theta" [H | 0.249 | 0.211 | 0.409 | 4.1e-177 | |
| UNIPROTKB|E1BMC0 | 2728 | POLQ "Uncharacterized protein" | 0.225 | 0.180 | 0.427 | 1.8e-175 | |
| FB|FBgn0002905 | 2059 | mus308 "mutagen-sensitive 308" | 0.364 | 0.388 | 0.363 | 1.9e-168 | |
| UNIPROTKB|F1NMU1 | 904 | POLQ "Uncharacterized protein" | 0.230 | 0.558 | 0.426 | 2.6e-152 | |
| UNIPROTKB|F1PXD9 | 1835 | POLQ "Uncharacterized protein" | 0.220 | 0.263 | 0.424 | 1.6e-118 | |
| WB|WBGene00020964 | 1661 | polq-1 [Caenorhabditis elegans | 0.159 | 0.210 | 0.335 | 2.4e-113 |
| TAIR|locus:2125677 AT4G32700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3990 (1409.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 849/1405 (60%), Positives = 1006/1405 (71%)
Query: 1 MASGSPRTRIDQFYAXXXXXXXXXXXXXXXAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
M S S ++RIDQFY EK+ K+T E SP KGTLD+YLK S DD
Sbjct: 1 MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDSYLKASLDDK 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSE- 119
T+ L +R E R L LE+ S + L ++ + + S++ + E
Sbjct: 61 STTNSGLQARQEAFTRKLDLEVSASSVGQNIHPCLPKPVSFATFKECLGQNGSQDLHKEG 120
Query: 120 VGC--HMKDG--SAHIPESLELKQFPTDFLSLYCXXXXXXXXXXXXXKLKDHKRHSSPSL 175
V H DG A+ ++ EL+ F T FLSLYC K + KR SS S
Sbjct: 121 VAAETHATDGLLCANQKDNSELRDFATSFLSLYCSGVQSVVGSPPHQKENELKRRSSSSS 180
Query: 176 LGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTD--- 232
L +D +I+ K+ C S + S + T E + + GN N + V+D
Sbjct: 181 LA-QDIQISHKRRCESENIPSLDDLTNPLGSKPES-----LARNGN---NRDKPVSDPTK 231
Query: 233 ---SNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEA 289
SN S+ + LRKC K+ +S+ + T +TP S +K+ TPKS CG+S+FSPGEA
Sbjct: 232 KMPSNESVEIPMGLRKCSKAPESSAHLTEFHTPG-SAIKSCPVGTPKSGCGSSMFSPGEA 290
Query: 290 FWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEIXXXXXXXXXXXXXXXEMLNEGDSK 349
FWNEAI++ADG + S A+ + D I L+ + +
Sbjct: 291 FWNEAIQVADGLTIPIENFGSVEAK-VRDQHVT--ILSCSKKTDKCTEKLERSLDLDEIR 347
Query: 350 VQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKG-TKPGCGAADTSEAMMF 408
V+ A G K + K D KE+ LP+K+L+ LF+DKN+ G + C + D + +
Sbjct: 348 VKDKDAIGFSKVVEKHGRDFNKEVYQLPVKNLELLFQDKNINGGIQERCASFDQNNITL- 406
Query: 409 RDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQ----EKDSVLIVHERKLDISSQ 464
+SE V +K C+ + +N +G+ E VL+ E +
Sbjct: 407 GSSRISESAFVGNKGCENLDIA---NNAQADKGLIGKMYPEPEGKKVLLCEENR------ 457
Query: 465 GIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISK 524
G+ S++ S N+ +KPVG+ +S+E+ TPSSS D L LS+WLPSE+CS+Y K+GISK
Sbjct: 458 GVRSVSMIS--NM-RKPVGSSESEESHTPSSSHRNYDGLSLSTWLPSEVCSVYNKKGISK 514
Query: 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584
LYPWQVECL VDGVLQ+RNLVYCASTSAGKSFVAE+LMLRR+I TGKMALLVLPYVSICA
Sbjct: 515 LYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVSICA 574
Query: 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644
EKAEHLEVLLEPLG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEEGRLSE+G
Sbjct: 575 EKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELG 634
Query: 645 IIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVG 704
IIVIDELHMV DQ+RGY RYAA KADPAHGLQIVG
Sbjct: 635 IIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGLQIVG 694
Query: 705 MSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKD 764
MSATMPNV AVADWLQAALY+T FRPVPLEEYIKVG+ IY+KKM+VVRTI AA++GGKD
Sbjct: 695 MSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKD 754
Query: 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAI 824
PDHIVELC+EVVQEG+SVLIFCSSRKGCESTARH+SK +K +NV +SEF+DI SAI
Sbjct: 755 PDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAI 814
Query: 825 DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884
DALRR P+G+DPVLEETLPSGVAYHHAGLTVEERE+VETCYRKGLVRVLTATSTLAAGVN
Sbjct: 815 DALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVN 874
Query: 885 LPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
LPARRVIFRQP IGRDFIDGTRY+QM+GRAGRTGIDTKG+S+LICKP E+K+IM LLNE+
Sbjct: 875 LPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNET 934
Query: 945 CPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSL 1004
CPPL SCLSEDKNGMTHAILEVVAGGIVQTA+DIHRYVRCTLLNSTKPFQDVVKSAQDSL
Sbjct: 935 CPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPFQDVVKSAQDSL 994
Query: 1005 RWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLV 1064
RWLCHRKFLEWNE+TKLY+TTPLGR +FGSSLCPEESLIVLDDL RAREG V+ASDLHLV
Sbjct: 995 RWLCHRKFLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDLHLV 1054
Query: 1065 YLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDS 1124
YL TPINV VEP+WELYYERF+ELS L+QSVGN+VGV EP+LMRMAHGA +R ++ +D
Sbjct: 1055 YLVTPINVGVEPNWELYYERFMELSPLEQSVGNRVGVVEPFLMRMAHGATVRTLNRPQDV 1114
Query: 1125 TKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGM 1184
K L G+ + R G TS MLSD Q LRVCKRF+VALILS+LVQE V EVCE FKVARGM
Sbjct: 1115 KKNLRGEYDSRHGSTSMKMLSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGM 1174
Query: 1185 VQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244
VQALQENAGRF+SMVSVFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELT+IPY+KGSRA
Sbjct: 1175 VQALQENAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRA 1234
Query: 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEA--QRRVQLGVAKKIKNGARKIVLE 1302
RALYKAGLRT AIAEASI EIVKALFESS+W AE QRR+ LG+AKKIKNGARKIVLE
Sbjct: 1235 RALYKAGLRTSQAIAEASIPEIVKALFESSAWAAEGTGQRRIHLGLAKKIKNGARKIVLE 1294
Query: 1303 KAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPM 1362
KAEEAR AAFSAFKSLGL+V + S+P+ + G+E TT D S + P +
Sbjct: 1295 KAEEARAAAFSAFKSLGLDVNELSKPLPLAPASSLNGQE---TT--ERDISRGSVGPDGL 1349
Query: 1363 EHSDKPSLEANQISKKVDLESAGEK 1387
+ S +E + + D+++ EK
Sbjct: 1350 QQS----IEGHMECENFDMDNHREK 1370
|
|
| ZFIN|ZDB-GENE-040724-232 si:rp71-1p14.5 "si:rp71-1p14.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1286 (457.8 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 346/1039 (33%), Positives = 534/1039 (51%)
Query: 415 EKGSVTHKSCQKIKFK-CHHDNTSRTEGI---SDVQEKDSVLIVHERKLDISSQGIDSIT 470
+K S KS QK+ F+ N S+ + + + ++ ++K + +Q + +T
Sbjct: 183 KKTSKVAKSKQKLNFREVTSPNDSKDYILFSPTHMAAAKERSVLQQQKRSLKNQSVSVLT 242
Query: 471 SDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLD---LSSW-LPSEICSIYKKRGISKLY 526
P + +G+ +A G D LD LSSW LP + Y+ G+ +++
Sbjct: 243 P--PPGLDLTVLGDATLSDAAQSIHMGRPADQLDKLLLSSWGLPKPVLEKYQSLGVHRMF 300
Query: 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586
WQ ECL + VL+ +NLVY A TSAGK+ V+E+L+L+R++ T + A+ +LP+VS+ EK
Sbjct: 301 EWQAECLTLGKVLEGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREK 360
Query: 587 AEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGII 646
+L+ + + G V Y G+ VAVCTIEKAN LVNR++EE +L +G +
Sbjct: 361 MFYLQNVFQEAGIRVEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTV 420
Query: 647 VIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMS 706
V+DELHMV D RGY RY A G+QI+GMS
Sbjct: 421 VVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTST----------GVQIIGMS 470
Query: 707 ATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPD 766
AT+PN+ +A WL A LY TN+RPVPL E++K+G IY +++VR A + G D D
Sbjct: 471 ATLPNLDLLARWLSAELYSTNYRPVPLMEWVKIGTNIYDGSLNLVRQFTPALPIKGDD-D 529
Query: 767 HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSK-FLKKFSINVHS-SDSEFIDITSA- 823
HIV LC E VQ+GHS L+FC S+ CE A + + F + S S + I +
Sbjct: 530 HIVSLCFETVQDGHSALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEG 589
Query: 824 -IDAL---RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
+D L +R PAGLD VL+ T+P GVA+HHAGLT +ER+++E +R+G +RVL ATSTL
Sbjct: 590 LLDVLAQLKRTPAGLDHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTL 649
Query: 880 AAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939
++GVNLPARRVI R P +D Y+QM GRAGR G+DT GES+L+CK E K M
Sbjct: 650 SSGVNLPARRVIIRTPVFNGHLLDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMS 709
Query: 940 LLNESCPPLHSCL-SEDKNGMT----HAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ 994
L+ S P+ SCL + G+T AILE++ GG+ + +D+ Y CTLL ++ +
Sbjct: 710 LIQGSLKPISSCLVKREGEGVTTSMLRAILEIIVGGVASSPQDVRMYAACTLLAASIAAE 769
Query: 995 DVVKSAQDS--LRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEE--SLIVLDDLSR 1050
+V + +S +EW D + G CP S + LS
Sbjct: 770 EVHQDGSESEARNKGAIEACIEWLMDNEFIHIQKEGDV---ERYCPTHLGSATLSSSLSP 826
Query: 1051 AREGFVLASDLHLVYLSTPINVEVEPDWELYYER---FLELSALDQSVGNQVGVSEPYLM 1107
E + +DL + E D + Y+ +++ + +D + P M
Sbjct: 827 P-EALGIFADLQRAMKGFVL----ENDLHILYQITPVYVDWTTIDWYQFFCLWEQLPSAM 881
Query: 1108 RMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQ 1167
+ A M + + + + GKL + T + + + KRF+ L+L LV
Sbjct: 882 KRV--AEM-VGIQEGFLARSVGGKL---IAKTEKQR----RQMAIHKRFFTTLVLLDLVS 931
Query: 1168 ETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVR 1227
E P+ V + + +RG +Q+LQ++A +A MV+VFC RLGW++LE L+++FQ+R+SFGV+
Sbjct: 932 EEPLGAVAKKYGCSRGQLQSLQQSASTYAGMVTVFCNRLGWHNLELLLSQFQSRLSFGVQ 991
Query: 1228 AEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL-----FESSSW-IAEAQ 1281
E+ +L I + RAR LY +G T +A A ++E+ KAL F+SS + E++
Sbjct: 992 RELCDLVRISLLTAQRARTLYSSGFVTVAELARADVTEVEKALRKAIPFKSSRQAVDESE 1051
Query: 1282 RRVQLGVAKK-IKNGARKIVLEKAEEARIAAFSAF---KSLGLNVPQFSRPILSTATENS 1337
Q + + I +K + E+ +I A + K L L +++ L T+
Sbjct: 1052 VEAQERKSMRCIWVSGKKALTEREAAQQIVAEAQLLLQKDLALLGVEWNPACLPAKTQ-- 1109
Query: 1338 TGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELS 1397
+ ++ T PR+ + EH L N +K+ LE+ +++N
Sbjct: 1110 --PDNSSNTEPRSMSGGT-------EHEGGQDLMLNVTEEKLLLEN------NSNNNSHP 1154
Query: 1398 ALVEGGSITELQQKFDAEN 1416
L S T L++ D ++
Sbjct: 1155 PLRPLESTTNLEKTMDVDS 1173
|
|
| UNIPROTKB|D4A628 Polq "Polymerase (DNA directed), theta (Predicted), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1247 (444.0 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 327/902 (36%), Positives = 480/902 (53%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 68 DQLLLANWGLPKAVLEKYHNFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 127
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + +G V Y G+ V
Sbjct: 128 LLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDV 187
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G +V+DELHM+ D +RGY +
Sbjct: 188 AVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSAS 247
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
A +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IKV
Sbjct: 248 CQADSASAL--------ACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKV 299
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN+IY M +VR + G D DHIV LC E V++ HSVL+FC S+K CE A +
Sbjct: 300 GNSIYDSSMKLVREFQPLLQVKG-DEDHIVSLCYETVRDNHSVLVFCPSKKWCEKVADII 358
Query: 800 SKFLKKFSINVHSS------DSEF----ID---ITSAIDALRRCPAGLDPVLEETLPSGV 846
++ +F N+H SEF +D + ID L+R P+GLD VL+ T+P GV
Sbjct: 359 AR---EF-YNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGV 414
Query: 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTR 906
A+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G +D
Sbjct: 415 AFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILT 474
Query: 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS---EDKNGMTHAI 963
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E + M AI
Sbjct: 475 YKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAI 534
Query: 964 LEVVAGGIVQTAEDIHRYVRCTLL-----NSTKPFQ----DVVKSAQDS-LRWLCHRKFL 1013
LE++ G+ T++D+ Y CT L + Q DV + A D+ + WL +F+
Sbjct: 535 LEIIVSGVASTSQDMQTYAACTFLAADVKEGKQGIQRNRDDVQRGAVDACVTWLLENEFI 594
Query: 1014 EWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE 1073
+ E + GS+ SL D L + L + L +++
Sbjct: 595 QAAEPSDGTGGKVYHPTHLGSATL-SSSLSPTDTLDIFAD---LQRAMKGFVLENDLHIV 650
Query: 1074 --VEP---DWEL--YYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMR-ISSKLRDST 1125
V P DW +Y F L S+ V+E L+ + G R + K+ T
Sbjct: 651 YLVTPVFEDWTSIDWYRFFCLWEKLPTSMKR---VAE--LVGVEEGFLARCVKGKVVART 705
Query: 1126 KGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMV 1185
+ H + + + KRF+ +L+L L+ E P+ E+ + + RG +
Sbjct: 706 ERQH------------------RQMAIHKRFFTSLVLLDLISEIPLKEINQKYGCNRGQI 747
Query: 1186 QALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRAR 1245
Q+LQ++A +A M++VF RLGW+++E L+++FQ R++FG++ E+ +L + + RAR
Sbjct: 748 QSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRAR 807
Query: 1246 ALYKAGLRTPLAIAEASISEIVKAL-----FESS-------SWIAEAQRRVQ-LGVAKKI 1292
LY +G T +A A E+ AL F+S+ AE +R ++ + VA K
Sbjct: 808 FLYASGFLTVADLARADTVEVEAALKDALPFKSARKAVDEEEEAAEERRSMRTIWVAGKS 867
Query: 1293 KNGARKIVLEKAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDK 1352
+ AR+ EEA++ +G+ S P+ S+ ++G E T K
Sbjct: 868 LS-AREAAALIVEEAKVILQQDLIEMGVQWGPHS-PLSSSTHSLTSGSEVKEHTFKSQTK 925
Query: 1353 SS 1354
SS
Sbjct: 926 SS 927
|
|
| RGD|1309795 Polq "polymerase (DNA directed), theta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 235/541 (43%), Positives = 322/541 (59%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 68 DQLLLANWGLPKAVLEKYHNFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 127
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + +G V Y G+ V
Sbjct: 128 LLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDV 187
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G +V+DELHM+ D +RGY +
Sbjct: 188 AVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSAS 247
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
A +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IKV
Sbjct: 248 CQADSASAL--------ACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKV 299
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN+IY M +VR + G D DHIV LC E V++ HSVL+FC S+K CE A +
Sbjct: 300 GNSIYDSSMKLVREFQPLLQVKG-DEDHIVSLCYETVRDNHSVLVFCPSKKWCEKVADII 358
Query: 800 SKFLKKFSINVHSS------DSEF----ID---ITSAIDALRRCPAGLDPVLEETLPSGV 846
++ +F N+H SEF +D + ID L+R P+GLD VL+ T+P GV
Sbjct: 359 AR---EF-YNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGV 414
Query: 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTR 906
A+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G +D
Sbjct: 415 AFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILT 474
Query: 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS---EDKNGMTHAI 963
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E + M AI
Sbjct: 475 YKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAI 534
Query: 964 LEVVAGGIVQTAEDIHRYVRCTLL-----NSTKPFQ----DVVKSAQDS-LRWLCHRKFL 1013
LE++ G+ T++D+ Y CT L + Q DV + A D+ + WL +F+
Sbjct: 535 LEIIVSGVASTSQDMQTYAACTFLAADVKEGKQGIQRNRDDVQRGAVDACVTWLLENEFI 594
Query: 1014 E 1014
+
Sbjct: 595 Q 595
|
|
| UNIPROTKB|O75417 POLQ "DNA polymerase theta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1060 (378.2 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 241/588 (40%), Positives = 339/588 (57%)
Query: 462 SSQGIDSITSDS--PTNVIKKPVGNE---KSDEAGT--PSSSGMLKDCLDLSSW-LPSEI 513
S G DS S +V+ P G K+ AG P+ +D L L++W LP +
Sbjct: 21 SGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPTVPDYERDKLLLANWGLPKAV 80
Query: 514 CSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMA 573
Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE+L+L+R++ K A
Sbjct: 81 LEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKA 140
Query: 574 LLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR 633
L +LP+VS+ EK +L+ L + +G V Y G+ +AVCTIE+AN L+NR
Sbjct: 141 LFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINR 200
Query: 634 MLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXK 693
++EE ++ +G++V+DELHM+ D +RGY Y
Sbjct: 201 LIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSL----- 255
Query: 694 ADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++ +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E +KVGN+IY M +VR
Sbjct: 256 ---SNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVRE 312
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN---- 809
+ G D DH+V LC E + + HSVL+FC S+K CE A +++
Sbjct: 313 FEPMLQVKG-DEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGL 371
Query: 810 VHSSDS-----EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
V S+ E ++ +D LRR P+GLD VL++T+P GVA+HHAGLT EER+++E
Sbjct: 372 VKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGA 431
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGE 924
+R+GL+RVL ATSTL++GVNLPARRVI R P G +D Y+QM GRAGR G+DT GE
Sbjct: 432 FRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGE 491
Query: 925 SMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNG-MTHAILEVVAGGIVQTAEDIH 979
S+LICK E K + LL S P+ SCL E+ G M AILE++ GG+ T++D+H
Sbjct: 492 SILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH 551
Query: 980 RYVRCTLLN-STKPFQDVVKSAQDSLR---------WLCHRKFLEWNE 1017
Y CT L S K + ++ Q+S++ WL +F++ E
Sbjct: 552 TYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTE 599
|
|
| UNIPROTKB|E1BMC0 POLQ "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 226/529 (42%), Positives = 321/529 (60%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP+ + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 199 DKLLLANWGLPTAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 258
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ K AL +LP+VS+ EK +L+ L + +G V Y G+ +
Sbjct: 259 LLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTRHFSSLDI 318
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G++V+DELHM+ D +RGY Y
Sbjct: 319 AVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITQKSAS 378
Query: 680 XXXXXXXXXXXXXKADP-AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIK 738
A P ++ +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IK
Sbjct: 379 CQADL---------AIPLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESIK 429
Query: 739 VGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798
+GN+IY M +VR + G D DH+V LC E V++ HSVL+FC S+K CE A
Sbjct: 430 IGNSIYDSSMKLVREFQPMLQVKG-DEDHVVSLCYETVRDNHSVLLFCPSKKWCEKLADI 488
Query: 799 VSKFLKKFSIN--------VHSSDS-----EFIDITSAIDALRRCPAGLDPVLEETLPSG 845
+++ + +S++ V SS+ E + +D L+R P+GLD VL++T+P G
Sbjct: 489 IAR--EFYSLHHQAEVTGLVRSSELPPVMLEQKGLLEVMDQLKRSPSGLDSVLQKTVPWG 546
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGT 905
VA+HHAGLT EER+++E +R+G +RVL ATSTL++GVNLPARRVI R P +D
Sbjct: 547 VAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIRTPIFSGRLLDIL 606
Query: 906 RYRQMAGRAGRTGIDT---KGESMLICKPEEVKKIMGLLNESCPPLHSCLS-----EDKN 957
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E +
Sbjct: 607 TYKQMVGRAGRKGVDTVGNTGESILVCKNSEKSKGITLLQGSLKPVHSCLQRHEGEEVTS 666
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLN-STKPFQDVVKSAQDSLR 1005
M AILE++ GG+ T++DI Y CT L S K + ++ +DS++
Sbjct: 667 SMIRAILEIIVGGVASTSQDIQTYASCTFLAASMKEGKQGIQKNKDSVQ 715
|
|
| FB|FBgn0002905 mus308 "mutagen-sensitive 308" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 323/888 (36%), Positives = 477/888 (53%)
Query: 429 FKCHHDNTSRTEGIS-DVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKS 487
F C + +E + D+ SVL E +IS Q +++S SP + P N
Sbjct: 134 FLCPAQDEEASEQLKEDILHSHSVLAKQEFYQEIS-QVTQNLSSMSPNQLRVSP--NSSR 190
Query: 488 DEAGTPSSSGM---LKDCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVL-QRR 542
P M L +S+W LP I + YKK+G+ ++ WQVECL +L +
Sbjct: 191 IREAMPERPAMPLDLNTLRSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHC 250
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602
NLVY A TSAGK+ V+EILML+ ++ GK LL+LP++S+ EK +++ LL P G V
Sbjct: 251 NLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVE 310
Query: 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYX 662
+YG + VA+CTIEKANS+VN+++E+G+L IG++V+DE+H+++D+ RGY
Sbjct: 311 GFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYI 370
Query: 663 XXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAA 722
Y + +Q++ MSAT+ NV + WL A
Sbjct: 371 LELLLAKILYMSRRNGLQ-------------------IQVITMSATLENVQLLQSWLDAE 411
Query: 723 LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTA-ANLGG--KDPDHIVELCDEVVQEG 779
LY TN+RPV L+E IKVG IY ++ +VR + L G D D + LC E + EG
Sbjct: 412 LYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEG 471
Query: 780 HSVLIFCSSRKGCES------TARHVSKFLKKFSINVHSSDSEFID--ITSAIDALRRCP 831
SV++FC S+ CE+ TA HV +K ++ + I LR P
Sbjct: 472 CSVIVFCPSKDWCENLAVQLATAIHVQ--IKSETVLGQRLRTNLNPRAIAEVKQQLRDIP 529
Query: 832 AGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891
GLD V+ + + A+HHAGLT EER+++E ++ G ++VL ATSTL++GVNLPARRV+
Sbjct: 530 TGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVL 589
Query: 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG--LLNESCPPLH 949
R P G + YRQM GRAGR G DT GES+LIC E+ MG L+ P+
Sbjct: 590 IRSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICN--EINARMGRDLVVSELQPIT 647
Query: 950 SCLSEDKNGMTH---AILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ------DVVKSA 1000
SCL D +G TH A+LEV++ G+ T EDI +V CTLL++ K F D A
Sbjct: 648 SCL--DMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDA 705
Query: 1001 Q---DSLRWLCHRKF--LEWNED--TKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRARE 1053
D+L +L +F L+ NE+ T +Y T LG A SS+ P + LI+ +L ++R
Sbjct: 706 NYINDALDFLVEYEFVRLQRNEERETAVYVATRLGAACLASSMPPTDGLILFAELQKSRR 765
Query: 1054 GFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGA 1113
FVL S+LH VYL TP +V Y +L +D + V + E +
Sbjct: 766 SFVLESELHAVYLVTPYSV-------CY-----QLQDIDWLL--YVHMWEKL------SS 805
Query: 1114 PMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLE 1173
PM+ +L G+ Y+ + L D + +++ KRFY+AL L LV ETP+
Sbjct: 806 PMKKVGEL----VGVRDAFLYK-ALRGQTKL-DYKQMQIHKRFYIALALEELVNETPINV 859
Query: 1174 VCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVEL 1233
V +K RGM+Q+LQ+ A FA +V+ FC L W L ++++F++R+ FG+ ++++L
Sbjct: 860 VVHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDL 919
Query: 1234 TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQ 1281
IP + RARAL+ AG+ + + +A A E+ K L+ S S+ + Q
Sbjct: 920 MRIPDLSQKRARALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQ 967
|
|
| UNIPROTKB|F1NMU1 POLQ "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.6e-152, Sum P(3) = 2.6e-152
Identities = 230/539 (42%), Positives = 322/539 (59%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L+SW LP + Y G+ +++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 32 DKLLLASWGLPKAVLEKYHSLGVVQMFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAE 91
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + + V Y G+ V
Sbjct: 92 LLILKRVLETRKKALFILPFVSVAKEKKCYLQALFQEVDMRVGGYMGSISPAGRFSLLDV 151
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIEKAN L+NR++EE ++ +G++V+DELHM+ D +RGY RY
Sbjct: 152 AVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHRGYLLELLLTKVRYITEKAAK 211
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
K+ G+Q+VGMSAT+PN+ +A WL A LY T+FRPVPL+E++K+
Sbjct: 212 RKTKM--------KSPGFGGIQVVGMSATLPNLGLLASWLDAELYCTDFRPVPLKEWVKI 263
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN IY M++VR L G D DH+V LC E V +GHSVL+FC S+ CE A +
Sbjct: 264 GNNIYDSSMNLVREFQPKLQLKG-DEDHVVSLCYETVCDGHSVLLFCPSKNWCEKLADII 322
Query: 800 SK-FL-----KKFSINVHSSDSEFID---ITSAIDALRRCPAGLDPVLEETLPSGVAYHH 850
++ F +K S S +D I +D LRR +GLD VL+ TLP GVA+HH
Sbjct: 323 AREFYSLQQAEKGSAKNSSLSPVVVDREGIDEVLDQLRRSLSGLDSVLQRTLPWGVAFHH 382
Query: 851 AGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQM 910
AGLT +ER+++E +R+ +RVL ATSTL++GVNLPARRVI R P G +D Y+QM
Sbjct: 383 AGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVIIRTPMFGGTLLDVLTYKQM 442
Query: 911 AGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDK-----NGMTHAILE 965
AGRAGR G+DT+GES+L+CKP E K LL S P+ SCL + + M AILE
Sbjct: 443 AGRAGRKGVDTEGESILVCKPSERSKGTALLQGSLKPVRSCLLRKEGEGVASSMKRAILE 502
Query: 966 VVAGGIVQTAEDIHRYVRCTLLNST--------KPFQDVVKSA--QDSLRWLCHRKFLE 1014
++ G+ T +D+ Y CTLL S+ + QD V++ + + WL +F++
Sbjct: 503 IIVSGVANTPDDVQTYASCTLLASSLKDNKRENEKEQDKVQTGPIEACIAWLLENEFIQ 561
|
|
| UNIPROTKB|F1PXD9 POLQ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 1.6e-118, Sum P(4) = 1.6e-118
Identities = 220/518 (42%), Positives = 311/518 (60%)
Query: 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584
++ WQ ECL + VL+ +NLVY A TSAGK+ VAE+LML+R++ K AL +LP+VS+
Sbjct: 1 MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAK 60
Query: 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644
EK +L+ L + +G +V Y G+ +AVCTIE+AN L+NR++EE ++ +G
Sbjct: 61 EKKYYLQSLFQEIGINVDGYMGSTSPTGHFSSLDIAVCTIERANGLINRLIEENKMDLLG 120
Query: 645 IIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADP-AHGLQIV 703
++V+DELHM+ D +RGY Y A P ++ +QIV
Sbjct: 121 MVVVDELHMLGDSHRGYLLELLLTKICYITHKSASCQADL---------ASPLSNAVQIV 171
Query: 704 GMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK 763
GMSAT+PN+ VA WL A LY TNFRPVPL E +K+GN+IY M +VR + G
Sbjct: 172 GMSATLPNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIYDSSMKLVREFQPNLQVKG- 230
Query: 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS-KFLK---KFSINVHSSDS---- 815
D DH+V LC E + + HSVLIFC S+K CE A ++ +F + + V SS+
Sbjct: 231 DEDHVVSLCYETICDNHSVLIFCPSKKWCEKLADIIACEFYNLHHQATGLVRSSELPPVV 290
Query: 816 -EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
E + +D L+R P+GLD VL++T+P GVA+HHAGLT EER+++E +R+G +RVL
Sbjct: 291 LEQKGLLEVMDQLKRSPSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLA 350
Query: 875 ATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934
ATSTL++GVNLPARRVI R P G +D Y+QM GRAGR G+DT GES+L+CK E
Sbjct: 351 ATSTLSSGVNLPARRVIIRTPIFGGQPLDILTYKQMVGRAGRKGVDTVGESILVCKNSEK 410
Query: 935 KKIMGLLNESCPPLHSCLSEDKN-----GMTHAILEVVAGGIVQTAEDIHRYVRCTLLNS 989
K + LL S P+ SCL K M AILE++ GG+ T++D+ Y CT L +
Sbjct: 411 SKGIALLQGSLKPVRSCLQRQKGEEVTASMIRAILEIIVGGVASTSQDMQTYASCTFLAA 470
Query: 990 T--------KPFQDVVK--SAQDSLRWLCHRKFLEWNE 1017
+ + QD V+ + + + WL +F++ E
Sbjct: 471 SMKEGKLGSQKNQDCVQLGAIEACVMWLLENEFIQITE 508
|
|
| WB|WBGene00020964 polq-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 127/378 (33%), Positives = 201/378 (53%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA-LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++I+GMSAT+P + + WL A ++E FRP+ L+ +I +G+ + K D +L
Sbjct: 181 VRIIGMSATIPELYRIGKWLDGAKVFEARFRPIVLQNHIVIGSEL-RKSGD--NKVLREF 237
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
+ +DP ++ L +E + L+ SS+ E TA +++ +F ++ +DS +
Sbjct: 238 S---EDP--LILLTEESFRRNSQTLVMISSKLDAEKTALNIAS---RFH-EINKTDSSLL 288
Query: 819 DITSA-IDALRRCPAGL------DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+I + L GL D + TL GVAYHHAGLT+EERE +E +R+ +
Sbjct: 289 EILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIV 348
Query: 872 VLTATSTLAAGVNLPARRVIFR-QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
+L ATSTLA+GVNLPA RV+ + QPR G + YRQM GRAGRTG T+GE+ L+ K
Sbjct: 349 ILVATSTLASGVNLPAERVLIKAQPR-GPSALTSLNYRQMVGRAGRTGHATRGETYLLIK 407
Query: 931 PEEVKKIMGLLNESCPP--LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLN 988
+ ++ ++ L ++ ++ ILE + G+ T IH + L N
Sbjct: 408 KCDRDAVLKIIETPIDQGVLTRKRDAERTNLSRFILEGICTGLTTTRSQIHDLCKLLLFN 467
Query: 989 STKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048
S ++ + ++ L F+ +E+ S T LGRAA SSL PE SL + +DL
Sbjct: 468 SEN-----LQLSDIAIEMLLRNSFISQDENDDQLSPTQLGRAAIASSLPPEASLAIFEDL 522
Query: 1049 SRAREGFVLASDLHLVYL 1066
+ A L ++LH++YL
Sbjct: 523 NSASRAIALDTELHMLYL 540
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
| 3rd Layer | 2.7.7 | 0.691 |
| 4th Layer | 2.7.7.7 | 0.737 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2191 | |||
| cd08638 | 373 | cd08638, DNA_pol_A_theta, DNA polymerase theta is | 1e-168 | |
| PRK05755 | 880 | PRK05755, PRK05755, DNA polymerase I; Provisional | 1e-107 | |
| cd08637 | 377 | cd08637, DNA_pol_A_pol_I_C, Polymerase I functions | 1e-102 | |
| TIGR00593 | 887 | TIGR00593, pola, DNA polymerase I | 2e-93 | |
| COG0749 | 593 | COG0749, PolA, DNA polymerase I - 3'-5' exonucleas | 1e-91 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 6e-90 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 2e-87 | |
| smart00482 | 207 | smart00482, POLAc, DNA polymerase A domain | 9e-65 | |
| pfam00476 | 383 | pfam00476, DNA_pol_A, DNA polymerase family A | 7e-64 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 6e-58 | |
| cd08640 | 371 | cd08640, DNA_pol_A_plastid_like, DNA polymerase A | 3e-53 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 3e-52 | |
| PRK14975 | 553 | PRK14975, PRK14975, bifunctional 3'-5' exonuclease | 6e-48 | |
| cd06444 | 347 | cd06444, DNA_pol_A, Family A polymerase primarily | 2e-44 | |
| cd08639 | 324 | cd08639, DNA_pol_A_Aquificae_like, Phylum Aquifica | 3e-42 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-37 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 3e-33 | |
| cd08643 | 429 | cd08643, DNA_pol_A_pol_I_B, Polymerase I functions | 4e-16 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 7e-16 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 3e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-14 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 4e-13 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 6e-11 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-10 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 8e-10 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-09 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 5e-09 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 5e-08 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 7e-08 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 1e-06 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 5e-06 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 7e-06 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 1e-05 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 8e-04 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 0.001 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 0.002 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 0.003 |
| >gnl|CDD|176475 cd08638, DNA_pol_A_theta, DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation | Back alignment and domain information |
|---|
Score = 521 bits (1343), Expect = e-168
Identities = 181/424 (42%), Positives = 250/424 (58%), Gaps = 51/424 (12%)
Query: 1753 GIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812
GIG D E + R LLQ KL+ LE++AY
Sbjct: 1 GIGFDPEELERQRALLQAKLKELEEEAYR------------------------------- 29
Query: 1813 KGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHG 1872
ST K L+ L+ HP+ +I E+R L+KLL + + L ++S S Q Y +H
Sbjct: 30 ------STSKEVLEQLKRLHPLPKLILEYRKLSKLLTTYVEPLLLLCKLSSSLQMYRIHP 83
Query: 1873 HWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENW 1932
W QT TATGRLS EPNLQ V E K + +E D I+ R FIP
Sbjct: 84 TWNQTGTATGRLSSSEPNLQNVPKDFEIKDA--PSPPAGSEGDIPTISLRHAFIPPP-GR 140
Query: 1933 ILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTK 1992
+LL+ADYSQ+ELR++AH S DPALI LL+ GDVF MIAA+W G+ + V +ER Q K
Sbjct: 141 VLLSADYSQLELRILAHLSGDPALIELLNS-GGDVFKMIAAQWLGKPVEEVTDEERQQAK 199
Query: 1993 RLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESL 2052
+L+YGILYGMG +L+EQL S EAK+ I+SFK+++PGV ++ + + G+VE+L
Sbjct: 200 QLVYGILYGMGAKSLAEQLGVSEEEAKQFIESFKNAYPGVRRFIRETIERARRNGFVETL 259
Query: 2053 KGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSL 2112
GR+R+L +I GN+ E+++A+RQAVN++ QGSAADI+KIAMINIH +
Sbjct: 260 TGRRRYLPEINSGNSSERAQAERQAVNTVIQGSAADIMKIAMINIHEKL----------H 309
Query: 2113 AANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGST 2172
+ + GR RL+LQ+HDEL+ EV S + E ++++ ME+AA L VPL VK+ +G +
Sbjct: 310 SLLPNLPAGRARLVLQIHDELLFEVPESDVDEVARIIKRSMENAAKLSVPLPVKVSIGKS 369
Query: 2173 WGSL 2176
WGSL
Sbjct: 370 WGSL 373
|
DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis (TLS) and in somatic hypermutation (SHM). DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Pol theta is an exception among family A polymerases and generates processive single base substitutions. Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. Polymerase theta mostly has amino-terminal helicase domain, a carboxy-terminal polymerase domain and an intervening space region. Length = 373 |
| >gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional | Back alignment and domain information |
|---|
Score = 366 bits (943), Expect = e-107
Identities = 234/828 (28%), Positives = 338/828 (40%), Gaps = 210/828 (25%)
Query: 1417 PPVPFVGPGT--------GGVEFNV--NASEIK----------IPDTTLSVQLGKNAIGT 1456
P VP +G T G +E + N EIK LS +L
Sbjct: 190 PGVPGIGEKTAAKLLQEYGSLE-GLYENLDEIKGKKKEKLRENKEQAFLSRKL------- 241
Query: 1457 ITSNRDLDLEVQ------DRPNRDPC-----------LVNKDRACNKGPIN-----AINA 1494
T D+ LEV P+R+ L+ + A P++ I
Sbjct: 242 ATIKTDVPLEVDLEDLELQPPDREKLIALFKELEFKSLLRRAAAAEAAPLDEEDYETILD 301
Query: 1495 SGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWS 1554
+ +L + +A F FD + E+ GL+ E Y+ L +
Sbjct: 302 EEELEAWLAKLKAAGLFAFDTETTSLDPMQA----ELVGLSFAVEPGEAAYIPLDQL--- 354
Query: 1555 DHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH 1614
L +K ++E ++K N+K + VL
Sbjct: 355 --------------------DREVLAALK-------PLLEDPAIKKVGQNLKYDLHVLAR 387
Query: 1615 AAVSIQRFGGLNLVG----TSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSS 1670
G+ L G T L +S+LL + G+D ++ + S
Sbjct: 388 Y--------GIELRGIAFDTML------ASYLLDP--GRRHGLDSLAERYL---GHKTIS 428
Query: 1671 NPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLW-KLLVSE 1729
+ + + AA T L VL KLL
Sbjct: 429 FEEVAGKQLTFAQVDLEEAAEY---------------AAEDADVTLRLHEVLKPKLLEEP 473
Query: 1730 ELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSL 1789
L+E IE+PLV VLA ME GI VD E + L ++L LE++ Y LAG +F++
Sbjct: 474 GLLELYEEIELPLVPVLARMERNGIKVDREYLKELSAELAQRLAELEQEIYELAGEEFNI 533
Query: 1790 YTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLN 1849
+ + +L+ L LP+ K K STD L+ L +HPI I E+R L+KL
Sbjct: 534 NSPKQLGEILFEKLGLPVG---KKTKTGYSTDAEVLEKLADDHPIPDKILEYRQLSKLK- 589
Query: 1850 CTLGSICSLARISMSTQKYT-------------LHGHWLQTSTATGRLSMEEPNLQCVEH 1896
ST YT +H + QT TATGRLS +PNLQ
Sbjct: 590 --------------ST--YTDALPKLINPDTGRIHTSFNQTVTATGRLSSSDPNLQ---- 629
Query: 1897 MVEFKMSN-----EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFS 1951
N E+ G +I R F+ E + LL+ADYSQIELR++AH S
Sbjct: 630 -------NIPIRTEE---GR------RI--RKAFVA-PEGYKLLSADYSQIELRILAHLS 670
Query: 1952 KDPALI-----GLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNT 2006
D LI G D+ T A+ G + V S++R + K + +GI+YGM
Sbjct: 671 GDEGLIEAFAEGE------DIHTATASEVFGVPLEEVTSEQRRRAKAINFGIIYGMSAFG 724
Query: 2007 LSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGN 2066
L++QL S EAKE I + +PGV ++ V +KGYVE+L GR+R+L I N
Sbjct: 725 LAQQLGISRKEAKEYIDRYFERYPGVKEYMERTVEQAREKGYVETLFGRRRYLPDINSRN 784
Query: 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLL 2126
++ A+R A+N+ QGSAADIIK+AMI + + + L + R+L
Sbjct: 785 GNRRAFAERAAINAPIQGSAADIIKLAMIRVDKAL------KEEGLKS---------RML 829
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWG 2174
LQVHDELV EV ++E LV++ ME+A L VPL+V + VG W
Sbjct: 830 LQVHDELVFEVPEDELEEVKKLVKEVMENAVELSVPLVVDVGVGDNWD 877
|
Length = 880 |
| >gnl|CDD|176474 cd08637, DNA_pol_A_pol_I_C, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-102
Identities = 158/412 (38%), Positives = 225/412 (54%), Gaps = 51/412 (12%)
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
L+K+L LE++ Y LAG +F++ + + VL+ L LP+ + K K STD L+
Sbjct: 12 LEKELAELEEEIYELAGEEFNINSPKQLGEVLFEKLGLPVGK---KTKTGYSTDAEVLEK 68
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
L EHPIV +I E+R L KL + + ++ L I+ T + +H + QT TATGRLS
Sbjct: 69 LADEHPIVELILEYRELTKLKSTYVDALPKL--INPKTGR--IHTSFNQTVTATGRLSSS 124
Query: 1888 EPNLQCVEHMVEFKMSNEDIYG--GNAEVDHCKINARDFFIPSQENWILLAADYSQIELR 1945
+PNLQ N I G +I R F+ E W+LL+ADYSQIELR
Sbjct: 125 DPNLQ-----------NIPIRTEEGR------EI--RKAFVAE-EGWVLLSADYSQIELR 164
Query: 1946 LMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPN 2005
++AH S D ALI D+ T AA G + V + R K + +GI+YG+
Sbjct: 165 ILAHLSGDEALIEAFKN-GEDIHTRTAAEVFGVPPEEVTPEMRRIAKAVNFGIIYGISAF 223
Query: 2006 TLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFG 2065
LS+QL S EAKE I + + +PGV ++ V +KGYVE+L GR+R++ +I
Sbjct: 224 GLSQQLGISRKEAKEYIDRYFARYPGVKEYMEETVEEAREKGYVETLFGRRRYIPEINSK 283
Query: 2066 NNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKG---R 2122
N ++ A+R A+N+ QG+AADIIK+AMI +H + LK +
Sbjct: 284 NRNVRAFAERIAINTPIQGTAADIIKLAMIRVH------------------KALKEEGLK 325
Query: 2123 CRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWG 2174
R+LLQVHDELV EV ++E +LV++ ME+A L VPL V + VG WG
Sbjct: 326 ARMLLQVHDELVFEVPEEELEEVAALVKEEMENAVELSVPLKVDVGVGKNWG 377
|
Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used to search for protein signatures. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Length = 377 |
| >gnl|CDD|233038 TIGR00593, pola, DNA polymerase I | Back alignment and domain information |
|---|
Score = 325 bits (834), Expect = 2e-93
Identities = 168/469 (35%), Positives = 245/469 (52%), Gaps = 41/469 (8%)
Query: 1708 CCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
RR A T+ L L K L +L+ IE+PL VLA+ME GI VD + +
Sbjct: 459 LARRAAATKRLAEELLKELDENKLLSLYREIELPLSKVLAEMEKTGIKVDADYLQELSQE 518
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
+++ LE++ Y LAG +F++ + + VL+ L LP+ + K K STD L+
Sbjct: 519 FGEEIADLEEEIYELAGEEFNINSPKQLGEVLFEKLGLPVGK---KTKTGYSTDADVLEK 575
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
LR +HPI+ +I E+R L KL + + + ++ T + +H + QT TATGRLS
Sbjct: 576 LREKHPIIALILEYRQLTKLKSTYVDGL--PELVNPDTGR--IHTTFNQTGTATGRLSSS 631
Query: 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLM 1947
PNLQ + E G KI R F+ + W+L++ADYSQIELR++
Sbjct: 632 NPNLQNIPIRSEE---------GR------KI--RKAFVAEKG-WLLISADYSQIELRVL 673
Query: 1948 AHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007
AH S+D LI D+ T A+R G + V R K + +G++YGM L
Sbjct: 674 AHLSQDENLIEAFQN-GEDIHTETASRLFGVEIEDVTPNMRRIAKTINFGVVYGMSAFGL 732
Query: 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNN 2067
+++L S EAKE I+ + + +PGV ++ V +KGYVE+L GR+R++ I N
Sbjct: 733 AQELGISRKEAKEFIERYFARYPGVKDYIENTVEEARKKGYVETLFGRRRYIPDINSRNR 792
Query: 2068 KEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127
+ A+R A+N+ QGSAADI+KIAMI + D L K + RLLL
Sbjct: 793 NVREAAERMAINAPIQGSAADIMKIAMIKL-----------DKRLKER----KLKARLLL 837
Query: 2128 QVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSL 2176
QVHDEL+ E +E +LV++ ME A L VPL V++ G WG
Sbjct: 838 QVHDELIFEAPEEEAEEVAALVKEVMEHAYPLAVPLEVEVGTGKNWGEA 886
|
All proteins in this family for which functions are known are DNA polymerases Many also have an exonuclease motif. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 887 |
| >gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = 1e-91
Identities = 188/655 (28%), Positives = 292/655 (44%), Gaps = 116/655 (17%)
Query: 1531 IHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIG 1590
+ GL+V E Y L++G NVL +
Sbjct: 41 LVGLSVASEEEAAYI----------------PLLHGPEQLNVL-------------AALK 71
Query: 1591 EIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFG-------GLNLVGTSLGLENVGSSFLL 1643
++E ++K N+K +VL + + LN + L+++ +L
Sbjct: 72 PLLEDEGIKKVGQNLKYDYKVLANLGIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLG 131
Query: 1644 LSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRA 1703
L + +D I ++ + +++ E ++E A A R
Sbjct: 132 LETITFED---------IAGKGKKQLTFADVKLEKATEYAAEDADATLR----------- 171
Query: 1704 AHNGCCRRVAQTRALCSVLWKLLVSEELIEALL-NIEIPLVNVLADMELWGIGVDMEGCL 1762
L S+L L+ ++ L IE+PLV VLA ME GI VD++
Sbjct: 172 --------------LESILEPELLKTPVLLELYEEIEMPLVRVLARMERNGIKVDVQYLK 217
Query: 1763 QARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1822
+ L +L LE++ Y LAG +F++ + + +L+ L LP K STD
Sbjct: 218 ELSKELGCELAELEEEIYELAGEEFNINSPKQLGEILFEKLGLPPGLKKTKTGN-YSTDA 276
Query: 1823 HCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATG 1882
L+ L +HP+ +I E+R LAKL + + L I+ T + +H + QT TATG
Sbjct: 277 EVLEKLADDHPLPKLILEYRQLAKLKSTYTDGLPKL--INPDTGR--IHTSFNQTGTATG 332
Query: 1883 RLSMEEPNLQCVEHMVEFKMSNEDI---YGGNAEVDHCKINARDFFIPSQENWILLAADY 1939
RLS +PNLQ N I G R F+ + L++ADY
Sbjct: 333 RLSSSDPNLQ-----------NIPIRSEEG---------RKIRKAFVAEKGYT-LISADY 371
Query: 1940 SQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGIL 1999
SQIELR++AH S+D L+ ++ D+ T AA G + V S++R + K + +G++
Sbjct: 372 SQIELRILAHLSQDEGLLRAFTE-GEDIHTATAAEVFGVPIEEVTSEQRRKAKAINFGLI 430
Query: 2000 YGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFL 2059
YGM L++QL EAKE I + +PGV ++ + GYVE+L GR+R+L
Sbjct: 431 YGMSAFGLAQQLGIPRKEAKEYIDRYFERYPGVKEYMERTKEEAREDGYVETLFGRRRYL 490
Query: 2060 SKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQML 2119
I N ++ A+R A+N+ QG+AADIIK+AMI + +
Sbjct: 491 PDINSSNRVVRAAAERAAINAPIQGTAADIIKLAMIKVD---------------KALKEE 535
Query: 2120 KGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWG 2174
K + RLLLQVHDELV EV ++E L++ ME+A L VPL V + +G W
Sbjct: 536 KLKARLLLQVHDELVFEVPKEELEEVKKLLKAIMENAVNLSVPLEVDVGIGKNWD 590
|
Length = 593 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = 6e-90
Identities = 219/810 (27%), Positives = 333/810 (41%), Gaps = 118/810 (14%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHV-DGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
L + I K GI +L+ Q E V G+L N++ A T +GK+ +A + +L L+
Sbjct: 16 LDDRVLEILKGDGIDELFNPQQE--AVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL 73
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEK 626
G + ++P ++ EK E L E LG V G+ V V T EK
Sbjct: 74 EGGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDERLARYDVIVTTPEK 132
Query: 627 ANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGEN 686
+SL + + E+ ++VIDE+H++ D+ RG +LE ++ ++R
Sbjct: 133 LDSLTRK--RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL---------- 180
Query: 687 SGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSK 746
++IVG+SAT+PN VADWL A L E+++RPVPL + A
Sbjct: 181 -------------IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGA 227
Query: 747 KMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806
L NL +EL E + EG VL+F SRK E TA+ + +
Sbjct: 228 DGKKKTWPLLIDNL-------ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSA- 279
Query: 807 SINVHSSDSEFIDIT--SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
SD E I + ++ + P D L E + GVA+HHAGL E+R++VE
Sbjct: 280 ----TLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDA 335
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVI-----FRQPRIGRDFIDGTRYRQMAGRAGRTGI 919
+RKG ++VL +T TLAAGVNLPAR VI P+ G I QMAGRAGR G
Sbjct: 336 FRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395
Query: 920 DTKGESMLICKP-EEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
D GE++++ +E++ + L +S P P+ S L ++ N T + + G V E
Sbjct: 396 DDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLEL 455
Query: 978 IHRYVRCTLLNSTKPFQDVVKSAQDSLRWL-CHRKFLEWNEDTKLYSTTPLGRAAFGSSL 1036
Y R T + + SLR+L + L+ D + T LG+ +
Sbjct: 456 TDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILD--ADWEALHATELGKLVSRLYI 513
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVG 1096
PE + I D L+ +++ L+YL
Sbjct: 514 DPESAKIFRDLLAELALE---PTEIGLLYL------------------------------ 540
Query: 1097 NQVGVSEPYLMRMAHGAPMRISSKLRDSTK-GLHGKLEYRLGITSNNMLSDAQTLRVCKR 1155
P LM +R + + L + +Y LG + + + L +
Sbjct: 541 ---ISLTPDLM----PIKLR-ERESSELVLDELEEQSDYLLGERLDELAVEYNLLL--QA 590
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFC---ERLGWYDLE 1212
A L + E E+ + VA G + + E A ++ + ERL
Sbjct: 591 LKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAERLAKILGL 650
Query: 1213 GLI-----AKFQNRVSFGVR-AEIVELTTIPYVKGSRARALYKAGLR----TPLAIAEAS 1262
GL R+ +GVR E++EL I V RAR LY AG + L A
Sbjct: 651 GLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAE 710
Query: 1263 ISEIVK-------ALFESSSWIAEAQRRVQ 1285
+ + A+ ES R
Sbjct: 711 LLPLTGIGERLVEAILESLGRDVLLSGRAY 740
|
Length = 766 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 2e-87
Identities = 221/783 (28%), Positives = 347/783 (44%), Gaps = 120/783 (15%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVD-GVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LP + Y+ GI +LYP Q E V+ G+L +NL+ T++GK+ +AE+ ML+ I
Sbjct: 8 LPEGVIEFYEAEGIEELYPPQAEA--VEAGLLDGKNLLAAIPTASGKTLIAELAMLKA-I 64
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN---QGGGSLPKDTSVAVCTI 624
+ G AL ++P ++ +EK E E E LG V G+ + D VA T
Sbjct: 65 ARGGKALYIVPLRALASEKFEEFERF-EELGVRVGISTGDYDSRDEWLGDNDIIVA--TS 121
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684
EK +SL+ L +I +V+DE+H++ NRG LE+ L KLR
Sbjct: 122 EKVDSLLRN--GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL----------- 168
Query: 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY 744
+P LQ+V +SAT+ N +ADWL A L ++ +RP+ L E + G AI+
Sbjct: 169 ----------NP--DLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIH 216
Query: 745 SKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK 804
D R + + KD + L + ++EG L+F SSR+ E A+ + LK
Sbjct: 217 FD--DSQREV----EVPSKDDT--LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALK 268
Query: 805 KFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
K ++ + A + L + + G A+HHAGL+ E RE+VE
Sbjct: 269 KTLTAAERAELAEL----AEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVIFR-----QPRIGRDFIDGTRYRQMAGRAGRTGI 919
+R L++V+++T TLAAG+NLPARRVI R G I Y QMAGRAGR G+
Sbjct: 325 FRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL 384
Query: 920 DTKGESMLICKP-EEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
D GE++L+ K +E+ ++ + P + S L+ + TH +L +A G +T +
Sbjct: 385 DPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTH-VLSTIASGFARTRDG 443
Query: 978 IHRYVRCTLLNS-TKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSL 1036
+ ++ T + T + + D L +L +E ED + T LG +
Sbjct: 444 LLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIE--EDGETLEATELGHLVSRLYI 501
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVG 1096
P + ++D L A++ L LHLV ST PD Y R + L++ +
Sbjct: 502 DPLSAAEIIDGLEAAKKPTDLGL-LHLV-CST-------PDMYELYLRSGDYEWLNEYL- 551
Query: 1097 NQVGVSEPYLMRMAHGA--PMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
H + S+ D + LS +T
Sbjct: 552 ------------YEHEDELLGDVPSEFED--------------DEFEDFLSAVKT----- 580
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQEN-------AGRFASMVSVFCERLG 1207
AL+L + E + E + V G ++ E A R AS + +
Sbjct: 581 ----ALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASELDL------ 630
Query: 1208 WYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIV 1267
DL + + RV +GVR E+++L + V RAR LY AG+ + + A S ++
Sbjct: 631 --DLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVL 688
Query: 1268 KAL 1270
L
Sbjct: 689 AIL 691
|
Length = 737 |
| >gnl|CDD|214687 smart00482, POLAc, DNA polymerase A domain | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 9e-65
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 17/216 (7%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI ++L++ADYSQIELR++AH S D LI + GD+ T AA+ G E+
Sbjct: 5 RRAFIAP-PGYVLVSADYSQIELRILAHLSGDENLIEAFNN-GGDIHTKTAAQVFGVPEE 62
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + R K + +GI+YGMG L+EQL S EAKE IK + + FPGV ++ +
Sbjct: 63 EVTPELRRAAKAINFGIIYGMGAKGLAEQLGISEAEAKELIKKYFARFPGVRRYIDRTLE 122
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+KGYV +L GR+R++ I N ++ A+R AVN+ QGSAADI+K+AMI + +
Sbjct: 123 EARRKGYVTTLFGRRRYIPDIDSRNPVLRAAAERAAVNTPIQGSAADILKLAMIKMDEAL 182
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEV 2137
F + R RLLLQVHDELV EV
Sbjct: 183 K------------EFGL---RARLLLQVHDELVFEV 203
|
Length = 207 |
| >gnl|CDD|201250 pfam00476, DNA_pol_A, DNA polymerase family A | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 7e-64
Identities = 140/422 (33%), Positives = 199/422 (47%), Gaps = 40/422 (9%)
Query: 1756 VDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGK 1815
VD+E + N L +L LE K LAG +F+L + + +L+ L LP
Sbjct: 1 VDVEYLEELSNELGAQLADLEFKIPELAGEEFNLGSPKQLGVLLFEELGLPK-TKKTDKT 59
Query: 1816 QHPSTDKHCLDLLRHE-HPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHW 1874
ST+ L+ LR + H I+ +I E+R L+KL + + + I + +H +
Sbjct: 60 GARSTNADVLESLREDAHEIIKIILEYRQLSKLQSTYVDKL--PLMIDPDDGR--IHTSY 115
Query: 1875 LQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWIL 1934
Q TATGRLS +PNLQ +I N R FI ++L
Sbjct: 116 NQAGTATGRLSSTDPNLQ-------------NIPIRNEYGREI----RAAFIAE-PGYVL 157
Query: 1935 LAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRL 1994
+AADYSQIELR++AH S D LI D+ T+ AA G V +R K
Sbjct: 158 VAADYSQIELRILAHLSGDENLIEAFRTGA-DIHTLTAADIFGVDLHEVTGNQRRNAKTF 216
Query: 1995 IYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKG 2054
+G +YG LS+ L S EAKE I+ + FPGV + + GYVE+L G
Sbjct: 217 NFGRIYGASAKGLSQLLGISREEAKEFIEKYFERFPGVKRYREKTRKEAKKGGYVETLFG 276
Query: 2055 RKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAA 2114
R+R+L I N + A+R A+N+ QGSAADI+K+AMI + +V
Sbjct: 277 RRRYLPDIDSRNRSLREAAERAALNTPIQGSAADILKLAMIKLDEALVEKGL-------- 328
Query: 2115 NFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWG 2174
R+ LQVHDE+V EV + + +++ ME A L VPLLV++ G W
Sbjct: 329 -------DARMCLQVHDEIVFEVPKEEAEAVAAQIKELMERAMFLDVPLLVEVGQGRNWF 381
Query: 2175 SL 2176
S
Sbjct: 382 SA 383
|
Length = 383 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 6e-58
Identities = 163/560 (29%), Positives = 250/560 (44%), Gaps = 85/560 (15%)
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601
N++ T+AGK+ +A + ++ G ++ ++P S+ EK E L L LG V
Sbjct: 38 ENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRS-LGMRV 95
Query: 602 RSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ G+ K V + T EKA+SL++ + ++++G+IV DE+H++ D++RG
Sbjct: 96 KISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGDEDRG 153
Query: 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ 720
LE +L+ RY + +I+ +SAT+ N +A WL
Sbjct: 154 PTLETVLSSARYVNPD-----------------------ARILALSATVSNANELAQWLN 190
Query: 721 AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGH 780
A+L ++NFRPVPL+ I +Y K R IL D I L E V +G
Sbjct: 191 ASLIKSNFRPVPLKLGI-----LYRK-----RLILDGYERSQVD---INSLIKETVNDGG 237
Query: 781 SVLIFCSSRKGCESTARHVSKFLKKFS-INVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839
VL+F SSRK E A + + +F+ V S ++ D L
Sbjct: 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNN----------------VYDDSLN 281
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899
E LP GVA+HHAGL+ E+R +E +R ++V+ AT TLAAGVNLPAR VI R I R
Sbjct: 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD--ITR 339
Query: 900 DFIDGTRY------RQMAGRAGRTGIDTKGESML-ICKPEEVKKIMGLLNESCPPLHSCL 952
G RY +QM GRAGR G D G + P L+ P+ S +
Sbjct: 340 YGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYM 399
Query: 953 SEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKF 1012
+ + L ++ G+ + ED+ + TL+ ++ + SL++L F
Sbjct: 400 GSQRK-VRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGF 458
Query: 1013 LEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLS----- 1067
++ + T LG+ + PE +LI+ + DL L Y+S
Sbjct: 459 IKGDVT---LRATRLGKLTSDLYIDPESALILKSAFDHDYD-----EDLALYYISLCREI 510
Query: 1068 TPINVEVEPDWELYYERFLE 1087
P N D Y FLE
Sbjct: 511 IPANTR---DDY-YAMEFLE 526
|
Length = 674 |
| >gnl|CDD|176477 cd08640, DNA_pol_A_plastid_like, DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 3e-53
Identities = 98/320 (30%), Positives = 142/320 (44%), Gaps = 57/320 (17%)
Query: 1879 TATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAAD 1938
T TGRLS PNLQ + E D KI R FI S N L+ AD
Sbjct: 84 TETGRLSSRNPNLQNQPAL---------------EKDRYKI--RKAFIASPGN-TLIVAD 125
Query: 1939 YSQIELRLMAHFSKDPALIGLLSKP---HG----DVFTMIAA---------RWTGRSEDS 1982
YSQ+ELRL+AH ++ ++I + H ++ +A W +
Sbjct: 126 YSQLELRLLAHMTRCKSMIEAFNAGGDFHSRTASGMYPHVAEAVANGEVLLEWKSEGKPP 185
Query: 1983 VG------SQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWL 2036
ER + K L + I YG + L++ EA+ + ++ S P V W
Sbjct: 186 APLLKDKFKSERRKAKVLNFSIAYGKTAHGLAKDWKVKLKEAERTVDAWYSDRPEVEQWQ 245
Query: 2037 HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMIN 2096
++GY +L GR R+L IK N K++ A+R A+N+ QGSAADI AM+
Sbjct: 246 KKTKKEARERGYTRTLLGRYRYLPDIKSRNRKKRGHAERAAINTPIQGSAADIAMKAMLR 305
Query: 2097 IHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMES- 2155
I+ N ++ + +LLLQ+HDE++LE EA+ +V+ CME+
Sbjct: 306 IYR---------------NLRLKRLGWKLLLQIHDEVILEGPEEKADEALKIVKDCMENP 350
Query: 2156 -AALLLVPLLVKIQVGSTWG 2174
L VPL V VG W
Sbjct: 351 FFGPLDVPLEVDGSVGYNWY 370
|
DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). The three-dimensional structure of plastid DNA polymerase has substantial similarity to Pol I. The structure of Pol I resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Length = 371 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-52
Identities = 137/437 (31%), Positives = 222/437 (50%), Gaps = 65/437 (14%)
Query: 513 ICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM 572
I + K+RGI +LYP Q E L GVL+ +NLV T++GK+ VAEI+M+ +L+ G
Sbjct: 12 IKRVLKERGIEELYPPQAEALK-SGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGK 70
Query: 573 ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT-----SVAVCTIEKA 627
A+ ++P ++ EK + E LG V G+ D + + T EK
Sbjct: 71 AVYLVPLKALAEEKYREFK-DWEKLGLRVAMTTGDYDS----TDEWLGKYDIIIATAEKF 125
Query: 628 NSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGE 685
+SL L G + ++ ++V DE+H++ +RG LE++LT +
Sbjct: 126 DSL----LRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM--------------- 166
Query: 686 NSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS 745
G+A QI+G+SAT+ N +A+WL A L +++RPV L + + ++
Sbjct: 167 -----LGRA------QILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFW 215
Query: 746 KKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKK 805
+ + R P+ L + V++G L+F ++R+ E A ++K +K+
Sbjct: 216 EDGKIERF-----------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKR 264
Query: 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCY 865
F + E + D+L P + L++ L GVA+HHAGL ER ++E +
Sbjct: 265 FL-----TKPELRALKELADSLEENPT--NEKLKKALRGGVAFHHAGLGRTERVLIEDAF 317
Query: 866 RKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF----IDGTRYRQMAGRAGRTGIDT 921
R+GL++V+TAT TL+AG+NLPA RVI R + +F I +QM GRAGR D
Sbjct: 318 REGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377
Query: 922 KGESMLICKPEEVKKIM 938
GE++++ EE K+M
Sbjct: 378 VGEAIIVATTEEPSKLM 394
|
Length = 720 |
| >gnl|CDD|237876 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 6e-48
Identities = 106/464 (22%), Positives = 164/464 (35%), Gaps = 96/464 (20%)
Query: 1735 LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLY-TAA 1793
L E A+MEL G+ D ++ + L L G L AA
Sbjct: 159 LAAAESAGALAAAEMELAGLPWD-------TDVHEALLAELLGPRPAAGGRPARLAELAA 211
Query: 1794 DIANVL----------------YGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPV 1837
+I L + +P ST K L +HP V
Sbjct: 212 EIREALGRPRLNPDSPQQVLRALRRAGIELP----------STRKWEL--REIDHPAVEP 259
Query: 1838 IKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQC 1893
+ E+R L+KLL+ L R H ++ TGR + PN Q
Sbjct: 260 LLEYRKLSKLLSANGWAWLDYWVRDGRF---------HPEYVPGGVVTGRWASRGPNAQQ 310
Query: 1894 VEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKD 1953
+ + R F+ W L+ AD SQIELR++A +S D
Sbjct: 311 IPRDI-----------------------RSAFVA-DPGWKLVVADASQIELRVLAAYSGD 346
Query: 1954 PALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNC 2013
+I GD+ + A+ G+ E+ ER K +G +YG L E
Sbjct: 347 ERMIEAFRTG-GDLHRLTASVGFGKPEEEKE--ERALAKAANFGAIYGATSKGLQEYAK- 402
Query: 2014 SSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKA 2073
+ EA ++ + ++P W+ A + G V +L GR + +
Sbjct: 403 NYGEAARLLERLRRAYPRAVGWVERAAREGERGGVVRTLLGRTSPPPGFAWRARRRARSR 462
Query: 2074 QRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDEL 2133
R N QG+AAD K+A+ + LA L+ VHDE+
Sbjct: 463 GRFTRNFPVQGTAADWAKLALALLR-----------RRLAE-----GLDAELVFFVHDEV 506
Query: 2134 VLEVDPSVIKEAVSLVQKCMESAALLL---VPLLVKIQVGSTWG 2174
V+E +E + +++ ME A LL VP V++ V ++
Sbjct: 507 VVECPEEEAEEVAAAIEEAMEEAGRLLFGPVPFPVEVAVVESYA 550
|
Length = 553 |
| >gnl|CDD|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-44
Identities = 93/370 (25%), Positives = 145/370 (39%), Gaps = 75/370 (20%)
Query: 1831 EHPIVPVIKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
HP VP++ E++ LAKL + L R H ++ T TGR +
Sbjct: 25 AHPAVPLLLEYKKLAKLWSANGWPWLDQWVRDGRF---------HPEYVPGGTVTGRWAS 75
Query: 1887 EEPNLQCV--EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIEL 1944
N Q + + + R F+ W L+ AD SQ+EL
Sbjct: 76 RGGNAQQIPRRDPLGRDI-------------------RQAFVAD-PGWTLVVADASQLEL 115
Query: 1945 RLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYG--- 2001
R++A S D AL + GD++T A+ G VG ER K G +YG
Sbjct: 116 RVLAALSGDEALAEAFGR-GGDLYTATASAMFGV---PVGGGERQHAKIANLGAMYGATS 171
Query: 2002 -MGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQK---GYVESLKGRKR 2057
+ L++ S+ EA I+ F S FP + + + GYV +L GR+
Sbjct: 172 GISARLLAQLRRISTKEAAALIELFFSRFPAFPKAMEYVEDAARRGERGGYVRTLLGRRS 231
Query: 2058 FLSKIKF-----------GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVY 2106
I++ + + A R A N + QG+AAD K+AM+ +
Sbjct: 232 PPPDIRWTEVVSDPAAASRARRVRRAAGRFARNFVVQGTAADWAKLAMVALR-------- 283
Query: 2107 KPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLL---VPL 2163
+ L RL+ VHDE+VL + ++V++ E A LL VP+
Sbjct: 284 -------RRLEELALDARLVFFVHDEVVLHCPKEEAEAVAAIVREAAEQAVRLLFGSVPV 336
Query: 2164 LVKIQVGSTW 2173
+++G W
Sbjct: 337 RFPVKIGVVW 346
|
DNA polymerase family A, 5'-3' polymerase domain. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gamma, and several bacteriophage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic polymerase I (pol I) has two functional domains located on the same polypeptide; a 5'-3' polymerase and a 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and the DNA polymerase activity to fill in the resulting gap. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Length = 347 |
| >gnl|CDD|176476 cd08639, DNA_pol_A_Aquificae_like, Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-42
Identities = 100/359 (27%), Positives = 159/359 (44%), Gaps = 67/359 (18%)
Query: 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLS 1885
+L EHP V ++ E+R L KL++ T G I T + +H + Q A+GR+S
Sbjct: 23 ELYIEEHPAVRLLLEYRKLNKLIS-TFGEK-LPKHIHPVTGR--IHPSFNQIGAASGRMS 78
Query: 1886 MEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELR 1945
PNLQ + EF R F+ + N L+ ADYSQIELR
Sbjct: 79 CSNPNLQQIPREREF---------------------RRCFVAPEGN-KLIIADYSQIELR 116
Query: 1946 LMAHFSKDPALIGLLSKPHG-DVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGP 2004
+ A S D +I K G D+ + A+ TG+ + + +ER K + +G++YGM
Sbjct: 117 IAAEISGDERMISAYQK--GEDLHRLTASLITGKPIEEITKEERQLAKAVNFGLIYGMSA 174
Query: 2005 NTLSEQLNCSSN------EAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
L E + EA++ +SF + G+ W H V +L GR+R
Sbjct: 175 KGLREYARTNYGVEMSLEEAEKFRESFFFFYKGILRWHH--RLKAKGPIEVRTLLGRRRV 232
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
F +A+N QG+ ADI+K+A+ ++V + D
Sbjct: 233 FEYFTF----------TEALNYPIQGTGADILKLALA----LLVDRLKDLD--------- 269
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLL---VPLLVKIQVGSTWG 2174
+++L VHDE+VLEV +EA +++ ME A + VP+ V++ + +W
Sbjct: 270 ----AKIVLCVHDEIVLEVPEDEAEEAKKILESSMEEAGKRILKKVPVEVEVSISDSWA 324
|
Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used for phylogenetic anaylsis of bacteria. Species of the phylum Aquificae grow in extreme thermophilic environments. The Aquificae are non-spore-forming, Gram-negative rods and strictly thermophilic. Phylum Aquificae Pol A is different from E. coli Pol I by three signature sequences consisting of a 2 amino acids (aa) insert, a 5-6 aa insert and a 6 aa deletion. These signature sequences may provide a molecular marker for the family Aquificaceae and related species. Length = 324 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-37
Identities = 109/434 (25%), Positives = 178/434 (41%), Gaps = 93/434 (21%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
+P + + K+ GI +L P QV + G+L+ NL+ ++T++GK+ + E+ + RL+S
Sbjct: 201 IPEKFKRMLKREGIEELLPVQVLAVE-AGLLEGENLLVVSATASGKTLIGELAGIPRLLS 259
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYG----NQGGGSLPKDTSVAVCTI 624
GK L ++P V++ +K E + LG V G + DTS I
Sbjct: 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADII 319
Query: 625 EKANSLVNRMLEEGR-LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683
++ +L G+ L +IG +VIDE+H + D+ RG L+ L+ +LRY
Sbjct: 320 VGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGA------ 373
Query: 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743
Q + +SAT+ N +A L A L + RPVPLE +
Sbjct: 374 -----------------QFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERH------- 409
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHS------VLIFCSSRKGCESTAR 797
L A + D I L S ++F SR+ C
Sbjct: 410 -----------LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRC----H 454
Query: 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857
++ L + A +HAGL +E
Sbjct: 455 ELADALTGKGLK------------------------------------AAPYHAGLPYKE 478
Query: 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917
R+ VE + + + T+ LAAGV+ PA +VIF +G +++ ++QM GRAGR
Sbjct: 479 RKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRP 538
Query: 918 GIDTKGESMLICKP 931
+G+ L+ +P
Sbjct: 539 DYHDRGKVYLLVEP 552
|
Length = 830 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-33
Identities = 118/465 (25%), Positives = 188/465 (40%), Gaps = 100/465 (21%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM-------ALLV 576
+L P+Q E + + + +++ CA TS+GK+ VAE + L ++ AL
Sbjct: 119 ELDPFQQEA--IAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSN 176
Query: 577 LPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLE 636
Y + A+ + +++ G N D V T E +++ R E
Sbjct: 177 QKYRDLLAKFGDVADMV----GLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSE 225
Query: 637 EGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696
R +I +V DE+H + D+ RG + E ++ L P
Sbjct: 226 SLR--DIEWVVFDEVHYIGDRERGVVWEEVIILL-------------------------P 258
Query: 697 AHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYS---KK 747
H ++ V +SAT+PN A+W+Q + T RPVPLE ++ VG ++ +K
Sbjct: 259 DH-VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEK 317
Query: 748 MDVVRTILTAANL-------GGKDPD------------------HIVELCDEVVQEGHS- 781
+AN ++ D E+V +
Sbjct: 318 KKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD 377
Query: 782 ----VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID--ITSAIDALRRCPAGLD 835
++F SR+GCE A + L + + I I AI L L
Sbjct: 378 NLLPAIVFSFSRRGCEEAA----QILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELP 433
Query: 836 P---VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892
+ L G+A HHAGL +E+VE +++GLV+V+ AT T A G+N+PAR V+F
Sbjct: 434 LQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF 493
Query: 893 R--QPRIGRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933
G + Y QM+GRAGR G+D G ++I P E
Sbjct: 494 TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538
|
Length = 1041 |
| >gnl|CDD|176480 cd08643, DNA_pol_A_pol_I_B, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-16
Identities = 69/343 (20%), Positives = 113/343 (32%), Gaps = 96/343 (27%)
Query: 1869 TLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKI----NARDF 1924
+HG TGR + PN+ A+V R+
Sbjct: 141 RIHGAVNTNGAVTGRATHFSPNM--------------------AQVPAVGSPYGKECREL 180
Query: 1925 FIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIA----ARWTGRSE 1980
F W L+ AD S +ELR +AH+ L++ G +T W
Sbjct: 181 FGVPPG-WSLVGADASGLELRCLAHY---------LARYDGGAYTRKVLGGDIHWANA-- 228
Query: 1981 DSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKI------------------ 2022
++G RD K IY LYG G L + + AK
Sbjct: 229 QAMGLLSRDGAKTFIYAFLYGAGDEKLGQIVGDDLRTAKNLNAEWPQTKKGTIKKIADKA 288
Query: 2023 ------KSFKSSFPGVASWLHVAVSSCHQK-GYVESLKGRKRFLSKIKFGNNKEKSKAQR 2075
+F P + L V +K G++ L GR+ + ++
Sbjct: 289 KGRVVRANFLKGLPALGK-LIKKVKEAAKKRGHLVGLDGRRIRV------------RSAH 335
Query: 2076 QAVNSICQGSAADIIKIAMINIHSIIV--GGVYKPDSSLAANFQMLKGRCRLLLQVHDEL 2133
A+N++ Q + A ++K ++ + + GGV+ D A VHDE+
Sbjct: 336 AALNTLLQSAGAILMKKWLVLLDDELTAKGGVWGGDFEYCAW-------------VHDEV 382
Query: 2134 VLEVDPSVIKEAVSLVQKCMESAALLL---VPLLVKIQVGSTW 2173
+E + +E + + E A PL + +G W
Sbjct: 383 QIECRKGIAEEVGKIAVEAAEKAGEHFNFRCPLAGEFDIGRNW 425
|
Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used to search for protein signatures. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Length = 429 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 7e-16
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 42/229 (18%)
Query: 518 KKRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIST-GKMALL 575
+K G L P+Q E + +L R+++ A T +GK+ A + L L G L+
Sbjct: 2 EKFGFEPLRPYQKEAIEA--LLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLV 59
Query: 576 VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD-----TSVAVCTIEKANSL 630
++P + + AE L+ L LG V YG + T + V T +
Sbjct: 60 LVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGR---- 115
Query: 631 VNRMLEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSG 688
+ +LE + LS + ++++DE H + D G LE LL L
Sbjct: 116 LLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP----------------- 158
Query: 689 TSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEY 736
+Q++ +SAT P L + PLE
Sbjct: 159 ---------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGFTPLEPI 198
|
Length = 201 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 42/199 (21%)
Query: 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSIC 583
P Q + + +L ++++ A T +GK+ + +L+ L+ G AL++ P +
Sbjct: 1 TPIQAQAIPA--ILSGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELA 58
Query: 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD--------TSVAVCTIEKANSLVNRML 635
+ E L+ L + LG V G G SL + + V T + L+ R
Sbjct: 59 EQIYEELKKLFKILGLRVALLTG---GTSLKEQARKLKKGKADILVGTPGRLLDLLRRG- 114
Query: 636 EEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695
+ L + ++V+DE H + D G LE +L++L
Sbjct: 115 KLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP------------------------ 150
Query: 696 PAHGLQIVGMSATMPNVAA 714
QI+ +SAT+P
Sbjct: 151 --PDRQILLLSATLPRNLE 167
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 838 LEETLPS---GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVIFR 893
L E L VA H GL+ EERE + + G ++VL AT G++LP VI
Sbjct: 3 LAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIY 62
Query: 894 QPRIGRDFIDGTRYRQMAGRAGRTG 918
Y Q GRAGR G
Sbjct: 63 DLPWSPA-----SYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 48/164 (29%)
Query: 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAID 825
+ ++EL E +++G VLIFC S+K + +++ L+K I V
Sbjct: 15 EALLELLKEHLKKGGKVLIFCPSKKMLD----ELAELLRKPGIKV--------------- 55
Query: 826 ALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNL 885
A H + EERE V +R+G + VL AT +A G++L
Sbjct: 56 ---------------------AALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDL 94
Query: 886 P-ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928
P VI Y Q GRAGR G KG ++L+
Sbjct: 95 PNVSVVINYDLPWSPS-----SYLQRIGRAGRAG--QKGTAILL 131
|
Length = 131 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-11
Identities = 61/293 (20%), Positives = 102/293 (34%), Gaps = 89/293 (30%)
Query: 630 LVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGT 689
L + E L ++ +++DE+H +A+ RG L L L +LR AG+
Sbjct: 138 LNSPKFRE-LLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGD------------- 183
Query: 690 SSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD 749
Q +G+SAT+ VA +L V + +++
Sbjct: 184 ----------FQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEI---------K 224
Query: 750 VVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809
V+ + + + V + + LIF ++R S A ++ LKK
Sbjct: 225 VISPVEDLIYDEELWAALYERIAELVKKHR-TTLIFTNTR----SGAERLAFRLKK---- 275
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
DI + HH L+ E R VE ++G
Sbjct: 276 ------LGPDI-------------------------IEVHHGSLSRELRLEVEERLKEGE 304
Query: 870 VRVLTATSTLAAG-----VNLPARRVI-FRQPRIGRDFIDGTRYRQMAGRAGR 916
++ + ATS+L G ++L VI P+ R+ Q GRAG
Sbjct: 305 LKAVVATSSLELGIDIGDIDL----VIQLGSPK------SVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-10
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVIFRQPRIGRDFIDG 904
VA H GL+ EERE + +R G +VL AT G++LP VI
Sbjct: 10 VARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPA---- 65
Query: 905 TRYRQMAGRAGRTG 918
Y Q GRAGR G
Sbjct: 66 -SYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-10
Identities = 63/273 (23%), Positives = 92/273 (33%), Gaps = 94/273 (34%)
Query: 646 IVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGM 705
+V+DE H +A RG LEL L +LR A P GL+ G+
Sbjct: 144 VVVDEWHELAGSKRGDQLELALARLRRLA---------------------P--GLRRWGL 180
Query: 706 SATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILT--------A 757
SAT+ N+ L V + V + K V ++L A
Sbjct: 181 SATIGNLEEARRVLL---------GVGGAPAVLVRGKL--PKAIPVISLLPESEERFPWA 229
Query: 758 ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
+LG + + + + + L+F ++R E +
Sbjct: 230 GHLGLRALPEVYA----EIDQARTTLVFTNTRSQAELWFQ-------------------- 265
Query: 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
AL +P E LP +A HH L E+R VE G +R + TS
Sbjct: 266 --------ALWE----ANP--EFALP--IALHHGSLDREQRRWVEAAMAAGRLRAVVCTS 309
Query: 878 TLAAGVN-LPARRVI----------FRQPRIGR 899
+L GV+ P VI Q R GR
Sbjct: 310 SLDLGVDFGPVDLVIQIGSPKGVARLLQ-RAGR 341
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-09
Identities = 94/431 (21%), Positives = 154/431 (35%), Gaps = 90/431 (20%)
Query: 504 DLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEIL 561
+ + S K GI +LY QV+ L L R RN+V T +GK+ +
Sbjct: 50 EFPELRDESLKSALVKAGIERLYSHQVDALR----LIREGRNVVVTTGTGSGKTESFLLP 105
Query: 562 MLRRLISTGK-MALLVLPYVSICAEKAEHLEVLLEPLGRHVRS--YYGNQGGGS----LP 614
+L L+ ALL+ P ++ ++AE L L+ L V Y G+ +
Sbjct: 106 ILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR 165
Query: 615 KDTSVAVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRY 672
+ + + + L+ R + L + +V+DELH +G + LLL +L
Sbjct: 166 NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH-TYRGVQGSEVALLLRRLLR 224
Query: 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNF---- 728
S LQI+ SAT+ N A+ L +E
Sbjct: 225 RLRRYGSP-------------------LQIICTSATLANPGEFAEELFGRDFEVPVDEDG 265
Query: 729 RPVPLEEYIKVGN-AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCS 787
P L ++ I + R+ L + L V+ G L+F
Sbjct: 266 SPRGLRYFV-RREPPIRELAESIRRSALAELAT-------LAALL---VRNGIQTLVFFR 314
Query: 788 SRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847
SRK E + L + LD V+
Sbjct: 315 SRKQVELLYLSPRRRLVREG-----------------------GKLLDA---------VS 342
Query: 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPA--RRVIFRQPRIGRDFIDGT 905
+ AGL EER +E +++G + + AT+ L G+++ + + + P +
Sbjct: 343 TYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSV-----L 397
Query: 906 RYRQMAGRAGR 916
+RQ AGRAGR
Sbjct: 398 SFRQRAGRAGR 408
|
Length = 851 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-09
Identities = 99/498 (19%), Positives = 175/498 (35%), Gaps = 143/498 (28%)
Query: 475 TNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLH 534
+K + + G + L LS L + K G + P Q+ +
Sbjct: 7 DRFVKLKSAHNVALSRGEEKTPPEFAS-LGLSPELLQAL----KDLGFEEPTPIQLAAIP 61
Query: 535 VDGVLQRRNLVYCASTSAGK--SFVAEIL--MLRRLISTGKMALLVLPYVSICAEKAEHL 590
+ +L R+++ A T GK +F+ +L +L+ + AL++ P + + AE L
Sbjct: 62 L--ILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEEL 119
Query: 591 EVLLEPLGR-HVRSYYGNQGGGSLPKDTSVA--------VCTIEKANSLVNRMLEEGRLS 641
L + LG V YG G + A V T + L+ R + LS
Sbjct: 120 RKLGKNLGGLRVAVVYG----GVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLS 173
Query: 642 EIGIIVIDELHMVADQ--NRGYL--LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPA 697
+ +V+DE AD+ + G++ +E +L L
Sbjct: 174 GVETLVLDE----ADRMLDMGFIDDIEKILKALP-------------------------- 203
Query: 698 HGLQIVGMSATMPNVAAVADWLQAAL---------YETNFRPVPL--EEYIKVGNAIYSK 746
Q + SATMP+ + + + L E R + + Y++V + +
Sbjct: 204 PDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES--EEE 259
Query: 747 KMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806
K++++ +L + G V++F +++ E +++ L+K
Sbjct: 260 KLELLLKLLKDEDEG-------------------RVIVFVRTKRLVE----ELAESLRKR 296
Query: 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR 866
V AL H L EER+ ++
Sbjct: 297 GFKV--------------AAL----------------------HGDLPQEERDRALEKFK 320
Query: 867 KGLVRVLTATSTLAAGVNLPA-RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925
G +RVL AT A G+++P VI + + Y GR GR G KG +
Sbjct: 321 DGELRVLVATDVAARGLDIPDVSHVINYDLPLDPED-----YVHRIGRTGRAG--RKGVA 373
Query: 926 MLICKP-EEVKKIMGLLN 942
+ EEVKK+ +
Sbjct: 374 ISFVTEEEEVKKLKRIEK 391
|
Length = 513 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-08
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWY-DLEGL 1214
F A +L + E P E+ ET+ + G + + E A + + ++
Sbjct: 569 FKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDY 628
Query: 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268
+ RV GVR E++EL +P + RARALY AG R+ I A SE++K
Sbjct: 629 LETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLK 682
|
Length = 720 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 32/172 (18%)
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGR- 599
R+++ A T +GK+ A + +L L S G L++ P + + AE L+ L +
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 600 --HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
+ Q L T + V T + + R + L ++ ++++DE H + +Q
Sbjct: 61 GYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQ 118
Query: 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM 709
G L +L KL Q++ +SAT
Sbjct: 119 GFGLLGLKILLKLP--------------------------KDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-06
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 1159 ALILSRLVQETPVLEVCETFKVARGMVQALQENAG----RFASMVSVFCERLGWYDLEGL 1214
A++L + E + ++ +T+ +A G VQA +A A + S++ ++
Sbjct: 541 AMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIYKP-----EMRRK 595
Query: 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESS 1274
+ R+ G+R ++++L IP V RAR LY AG +T IA +S I K ++ S
Sbjct: 596 LEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERI-KKIYGFS 654
Query: 1275 SWIAEAQRRVQLGVAKKIKNGARKIVLEK 1303
+A A I N A KI
Sbjct: 655 DTLANA-----------IVNRAMKISSMY 672
|
Length = 674 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-06
Identities = 101/443 (22%), Positives = 155/443 (34%), Gaps = 114/443 (25%)
Query: 507 SWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL 566
+W ++ + + GI + PWQ + + R++V T++GKS ++ +L L
Sbjct: 19 AWAHPDVVAALEAAGIHR--PWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSAL 76
Query: 567 IS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIE 625
AL + P ++ A++ + L G +Y G DT
Sbjct: 77 ADDPRATALYLAPTKALAADQLRAVREL-TLRGVRPATYDG---------DTPTEERRWA 126
Query: 626 KANS---LVN-RMLEEGRL----------SEIGIIVIDELHMVADQNRGYL---LELLLT 668
+ ++ L N ML G L + +VIDE H RG + L+L
Sbjct: 127 REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH----SYRGVFGSHVALVLR 182
Query: 669 KLRYAAGEGTSDSSSGENSGTSSGKADPA-HGLQIVGMSATMPNVAAVAD------WLQA 721
+LR + S T+ ADPA +++G V AV +
Sbjct: 183 RLRRLCARYGASPVFVLASATT---ADPAAAASRLIGAP-----VVAVTEDGSPRGARTV 234
Query: 722 ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHS 781
AL+E + E V + ++ D++ A+L V EG
Sbjct: 235 ALWEPPLTELTGENGAPVRRSASAEAADLL------ADL---------------VAEGAR 273
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEET 841
L F SR+G E A RR +DP L
Sbjct: 274 TLTFVRSRRGAELVAAIA----------------------------RRLLGEVDPDL--- 302
Query: 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR--VIFRQPRIGR 899
VA + AG E+R +E R G + + T+ L GV++ VI P
Sbjct: 303 -AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFP---- 357
Query: 900 DFIDGTR--YRQMAGRAGRTGID 920
GTR Q AGRAGR G
Sbjct: 358 ----GTRASLWQQAGRAGRRGQG 376
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-06
Identities = 49/252 (19%), Positives = 96/252 (38%), Gaps = 67/252 (26%)
Query: 639 RLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAH 698
+L + +++DE+H +A+ RG L L L +L AG
Sbjct: 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG----------------------G 206
Query: 699 GLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
+G+SAT+ + VA +L + R ++ +A + K D ++ I
Sbjct: 207 EFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDC------EIVDARFVKPFD-IKVISPVD 259
Query: 759 NLGGKDP----DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
+L + + E E+++E + LIF ++R G E ++ K
Sbjct: 260 DLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFP---------- 309
Query: 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
E D + HH+ L+ E R VE ++G ++V+
Sbjct: 310 -EEYDE-----------------------DNIGAHHSSLSREVRLEVEEKLKRGELKVVV 345
Query: 875 ATSTLAAGVNLP 886
++++L G+++
Sbjct: 346 SSTSLELGIDIG 357
|
Length = 876 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-05
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 48/144 (33%)
Query: 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDP 836
Q S +I+C +RK E A ++L+K I+
Sbjct: 228 QLSKSGIIYCLTRKKVEELA----EWLRKNGISA-------------------------- 257
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVI-FRQ 894
+HAGL+ EERE V+ + ++V+ AT+ G++ P R VI +
Sbjct: 258 ----------GAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307
Query: 895 PRIGRDFIDGTRYRQMAGRAGRTG 918
P Y Q GRAGR G
Sbjct: 308 P---GSIES---YYQETGRAGRDG 325
|
Length = 590 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-04
Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 50/157 (31%)
Query: 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDP 836
Q G S +I+C+SR E TA R G+
Sbjct: 234 QRGKSGIIYCNSRAKVEDTAA------------------------------RLQSRGIS- 262
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR--VIFRQ 894
A +HAGL + R V+ +++ ++++ AT G+N P R V F
Sbjct: 263 ---------AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313
Query: 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
PR + Y Q GRAGR G+ E+ML P
Sbjct: 314 PR------NIESYYQETGRAGRDGL--PAEAMLFYDP 342
|
Length = 607 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 0.001
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 68/268 (25%)
Query: 640 LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699
L + ++IDE+H VA RG L L L +L + +S+
Sbjct: 122 LRGVETVIIDEVHAVAGSKRGAHLALSLERL-----DALLHTSA---------------- 160
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
Q +G+SAT+ + + VA +L RPV V N + + R ++ AN
Sbjct: 161 -QRIGLSATVRSASDVAAFLGGD------RPV------TVVNPPAMRHPQI-RIVVPVAN 206
Query: 760 LG---------GKD----------PDHIVELCDEVVQEGHSVLIFCSSRKGCES-TARHV 799
+ G+D P + DEV++ S ++F +SR E TAR
Sbjct: 207 MDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRH-RSTIVFTNSRGLAEKLTARLN 265
Query: 800 SKFLKKF--SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857
+ + S ++ + F + A D + + HH ++ E+
Sbjct: 266 ELYAARLQRSPSIAVDAAHFESTSGATSNRV---QSSDVFIARS-------HHGSVSKEQ 315
Query: 858 REVVETCYRKGLVRVLTATSTLAAGVNL 885
R + E + G +R + ATS+L G+++
Sbjct: 316 RAITEQALKSGELRCVVATSSLELGIDM 343
|
Length = 1490 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.002
Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 50/160 (31%)
Query: 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDP 836
G S +I+ SSRK E A
Sbjct: 222 HRGQSGIIYASSRKKVEELAER-------------------------------------- 243
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVI-FRQ 894
LE S +AYH AGL+ + R + + V+V+ AT+ G++ P R VI +
Sbjct: 244 -LESQGISALAYH-AGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM 301
Query: 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934
P + Y Q AGRAGR G+ E++L+ P ++
Sbjct: 302 PG------NLESYYQEAGRAGRDGL--PAEAILLYSPADI 333
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 50/169 (29%)
Query: 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDP 836
+G S +I+C SRK E +L+ G+
Sbjct: 224 FKGKSGIIYCPSRKKSEQVT----------------------------ASLQN--LGI-- 251
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVI-FRQ 894
+ AYH AGL + R+ V +++ ++V+ AT G+N P R VI +
Sbjct: 252 -------AAGAYH-AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303
Query: 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943
P+ Y Q +GRAGR G+ E L P ++ ++ LL E
Sbjct: 304 PK------SMESYYQESGRAGRDGL--PSECHLFYAPADINRLRRLLME 344
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2191 | |||
| COG0749 | 593 | PolA DNA polymerase I - 3'-5' exonuclease and poly | 100.0 | |
| TIGR00593 | 887 | pola DNA polymerase I. This family is based on the | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 100.0 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| cd08637 | 377 | DNA_pol_A_pol_I_C Polymerase I functions primarily | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PF00476 | 383 | DNA_pol_A: DNA polymerase family A; InterPro: IPR0 | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| cd08638 | 373 | DNA_pol_A_theta DNA polymerase theta is a low-fide | 100.0 | |
| cd08643 | 429 | DNA_pol_A_pol_I_B Polymerase I functions primarily | 100.0 | |
| cd08640 | 371 | DNA_pol_A_plastid_like DNA polymerase A type from | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| cd08642 | 378 | DNA_pol_A_pol_I_A Polymerase I functions primarily | 100.0 | |
| cd08639 | 324 | DNA_pol_A_Aquificae_like Phylum Aquificae Pol A is | 100.0 | |
| cd06444 | 347 | DNA_pol_A Family A polymerase primarily fills DNA | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| cd08641 | 425 | DNA_pol_gammaA Pol gammaA is a family A polymerase | 100.0 | |
| smart00482 | 206 | POLAc DNA polymerase A domain. | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.98 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.98 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.97 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.97 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.97 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.96 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.95 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.95 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.95 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.95 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.95 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.94 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.94 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.94 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.94 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.93 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.92 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.92 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.92 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.92 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.92 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.91 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.91 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.9 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.88 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.87 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.87 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.86 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.85 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.85 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.81 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.81 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.81 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.78 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.77 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.76 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.73 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.66 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.64 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.6 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.59 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.59 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.59 | |
| cd06140 | 178 | DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' | 99.57 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.57 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.49 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.47 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.47 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 99.46 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.45 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.4 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.38 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.35 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.33 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.32 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.31 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 99.29 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.28 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.26 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.21 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.2 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.2 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.19 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.17 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.14 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.13 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.06 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.03 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.03 | |
| KOG3657 | 1075 | consensus Mitochondrial DNA polymerase gamma, cata | 99.01 | |
| cd06142 | 178 | RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon | 99.0 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.95 | |
| smart00474 | 172 | 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo | 98.94 | |
| TIGR01388 | 367 | rnd ribonuclease D. This model describes ribonucle | 98.93 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.92 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.87 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.85 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.84 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.83 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.83 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.81 | |
| PRK10829 | 373 | ribonuclease D; Provisional | 98.81 | |
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 98.8 | |
| cd06148 | 197 | Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro | 98.79 | |
| cd06147 | 192 | Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y | 98.78 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 98.74 | |
| cd00007 | 155 | 35EXOc 3'-5' exonuclease. The 35EXOc domain is res | 98.72 | |
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 98.71 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.7 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.68 | |
| COG0349 | 361 | Rnd Ribonuclease D [Translation, ribosomal structu | 98.65 | |
| cd09018 | 150 | DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease | 98.64 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.61 | |
| cd06128 | 151 | DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam | 98.52 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.5 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.46 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.42 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.36 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 98.36 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.28 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.28 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 98.25 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.96 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.81 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.71 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.6 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.45 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 97.39 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.39 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.36 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.35 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 97.34 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.31 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.22 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.1 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.04 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 96.98 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 96.92 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.92 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 96.87 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.83 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.6 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.6 | |
| PF14229 | 122 | DUF4332: Domain of unknown function (DUF4332) | 96.55 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.52 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 96.46 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.31 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.27 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.27 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.19 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.16 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.05 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.87 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 95.8 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 95.63 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 95.43 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.41 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.4 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 95.33 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.27 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.2 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 95.17 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 95.13 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 95.04 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 94.98 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.97 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.93 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 94.84 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 94.79 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.74 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.73 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.63 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.61 | |
| PRK06526 | 254 | transposase; Provisional | 94.61 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 94.34 | |
| TIGR01954 | 50 | nusA_Cterm_rpt transcription termination factor Nu | 94.3 | |
| cd00141 | 307 | NT_POLXc Nucleotidyltransferase (NT) domain of fam | 94.27 | |
| PRK14973 | 936 | DNA topoisomerase I; Provisional | 94.22 | |
| PRK08181 | 269 | transposase; Validated | 94.16 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.15 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 94.04 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 93.79 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.71 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 93.7 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 93.66 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 93.62 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 93.54 | |
| KOG2206 | 687 | consensus Exosome 3'-5' exoribonuclease complex, s | 93.48 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 93.43 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 93.37 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 93.3 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 93.27 | |
| PRK12377 | 248 | putative replication protein; Provisional | 93.26 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.2 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.2 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 93.2 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.16 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.13 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.13 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 93.09 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.09 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.02 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 92.97 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 92.94 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 92.94 | |
| PRK08116 | 268 | hypothetical protein; Validated | 92.93 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 92.9 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 92.82 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 92.81 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 92.78 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 92.69 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 92.68 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 92.61 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.58 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 92.52 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 92.49 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 92.47 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 92.46 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 92.46 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 92.45 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 92.43 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 92.3 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.02 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 92.01 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 91.99 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 91.97 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 91.91 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 91.91 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 91.82 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 91.81 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 91.77 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 91.71 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 91.67 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 91.63 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.5 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 91.47 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 91.35 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.34 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 91.27 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 91.26 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 91.15 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.14 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 91.12 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.12 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 91.0 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 90.91 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 90.86 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 90.85 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 90.76 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 90.7 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 90.69 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 90.47 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 90.39 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 90.36 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 90.36 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 90.33 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 90.3 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 90.23 | |
| PRK14666 | 694 | uvrC excinuclease ABC subunit C; Provisional | 90.2 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 90.2 | |
| PRK14672 | 691 | uvrC excinuclease ABC subunit C; Provisional | 90.09 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 90.04 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 90.04 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 89.97 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 89.88 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 89.85 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 89.77 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 89.63 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 89.61 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 89.51 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 89.49 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 89.43 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 89.38 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 89.36 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 89.33 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 89.3 | |
| PRK14670 | 574 | uvrC excinuclease ABC subunit C; Provisional | 89.15 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 89.07 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 88.95 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 88.9 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 88.9 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 88.76 | |
| PRK07883 | 557 | hypothetical protein; Validated | 88.76 | |
| PRK14973 | 936 | DNA topoisomerase I; Provisional | 88.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 88.61 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 88.52 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 88.51 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 88.51 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 88.39 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.35 | |
| PRK07773 | 886 | replicative DNA helicase; Validated | 88.28 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 88.27 | |
| PF13173 | 128 | AAA_14: AAA domain | 88.22 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 88.13 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 88.1 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 88.06 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 88.01 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 87.93 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 87.83 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 87.68 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 87.63 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 87.55 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 87.53 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 87.45 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 87.41 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 87.38 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 87.38 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 87.29 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 87.27 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 87.27 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 87.2 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 86.97 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 86.93 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 86.91 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 86.87 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 86.84 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.61 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 86.58 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.54 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 86.51 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 86.49 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 86.37 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 86.29 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 86.25 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 86.24 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 86.23 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 86.2 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 86.18 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 86.18 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 85.98 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 85.97 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 85.87 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 85.79 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 85.76 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 85.73 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 85.73 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 85.64 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 85.53 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 85.51 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 85.44 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 85.39 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 85.39 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 85.36 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 85.31 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 85.16 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 85.14 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 85.02 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 85.02 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 84.86 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 84.83 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 84.53 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 84.52 | |
| PRK14669 | 624 | uvrC excinuclease ABC subunit C; Provisional | 84.5 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 84.47 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 84.45 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 84.31 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 83.89 | |
| PF09281 | 138 | Taq-exonuc: Taq polymerase, exonuclease; InterPro: | 83.85 | |
| PRK07758 | 95 | hypothetical protein; Provisional | 83.71 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 83.53 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 83.48 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 83.41 | |
| COG2251 | 474 | Predicted nuclease (RecB family) [General function | 83.37 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 83.33 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 83.29 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 83.26 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 83.08 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 83.08 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 83.0 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 82.97 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 82.96 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 82.64 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 82.46 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 82.4 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 82.13 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 82.1 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 81.94 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 81.88 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 81.75 | |
| PHA00350 | 399 | putative assembly protein | 81.7 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 81.67 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 81.63 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 81.11 | |
| COG3743 | 133 | Uncharacterized conserved protein [Function unknow | 81.1 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 81.05 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 80.67 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 80.66 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 80.58 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 80.5 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 80.22 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 80.2 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 80.17 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 80.15 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 80.1 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 80.04 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 80.01 |
| >COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-123 Score=1156.36 Aligned_cols=577 Identities=32% Similarity=0.476 Sum_probs=515.1
Q ss_pred CcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCC
Q 000107 1494 ASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVL 1573 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1573 (2191)
+...+..++..+.....++||+++.+. ......++|+++++.+ .++|+++.+.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~a~~~et~~l----~~~~~~lvg~s~~~~~-~~~yi~~~~~~----~~--------------- 63 (593)
T COG0749 8 DLAVLNAWLTKLNAAANIAFDTETDGL----DPHGADLVGLSVASEE-EAAYIPLLHGP----EQ--------------- 63 (593)
T ss_pred HHHHHHHHHHHHhhcccceeecccccc----CcccCCeeEEEeeccc-cceeEeeccch----hh---------------
Confidence 334456666666666669999987643 2233479999999988 89999997631 00
Q ss_pred ChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccc
Q 000107 1574 TPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGI 1653 (2191)
Q Consensus 1574 ~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1653 (2191)
+ .....+++||++++.+|++||+|+|+++|+++|+. .+. .+
T Consensus 64 -----~----~~~~~l~~~l~~~~~~kv~~~~K~d~~~l~~~Gi~-~~~-----------------------------~~ 104 (593)
T COG0749 64 -----L----NVLAALKPLLEDEGIKKVGQNLKYDYKVLANLGIE-PGV-----------------------------AF 104 (593)
T ss_pred -----h----hhHHHHHHHhhCcccchhccccchhHHHHHHcCCc-ccc-----------------------------hH
Confidence 0 13467899999999999999999999999999954 221 58
Q ss_pred hHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---HHHhhccCchhhhhH----HHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1654 DMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA---AAAANRSGRWKNQMR----RAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1654 Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~---~~~~~~~g~~~~~~~----~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
|||||+||++|+...+++++|... +++.+. ....++..+. ..+. ..+..|++.|++++++|+..|++++
T Consensus 105 DtmlasYll~~~~~~~~~~~l~~r---~l~~~~~~~~~i~~kg~~~-~~~~~~~~~~~~~y~a~~a~~~~~L~~~l~~~l 180 (593)
T COG0749 105 DTMLASYLLNPGAGAHNLDDLAKR---YLGLETITFEDIAGKGKKQ-LTFADVKLEKATEYAAEDADATLRLESILEPEL 180 (593)
T ss_pred HHHHHHhccCcCcCcCCHHHHHHH---hcCCccchhHHhhcccccc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888876666544 444433 3333322211 1121 3467899999999999999999876
Q ss_pred HH-HHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCC
Q 000107 1727 VS-EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805 (2191)
Q Consensus 1727 ~~-~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~l 1805 (2191)
.+ ..|.++|.++|||++.||+.||.+||.||.+.|..+..++..++.+++++||+++|.+||++|||||+.+||++|||
T Consensus 181 ~~~~~L~~l~~~iE~Pl~~VLa~ME~~Gi~vD~~~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~ILfeKl~L 260 (593)
T COG0749 181 LKTPVLLELYEEIEMPLVRVLARMERNGIKVDVQYLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEILFEKLGL 260 (593)
T ss_pred hhhhhHHHHHHHHhccHHHHHHHhHhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC
Confidence 65 55799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeecccccccccccccc
Q 000107 1806 PIPEGHNKGKQ-HPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRL 1884 (2191)
Q Consensus 1806 p~~~~~~k~k~-~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRl 1884 (2191)
|+ .. +|+|+ +|||+.+||++|+..||++++||+||+++|+.+||+++|+.+++ ..+|||||+|+|++|+||||
T Consensus 261 p~-~~-kKtktG~yST~~~vLe~L~~~h~i~~~iL~~Rql~KLksTY~d~L~~~i~----~~t~RIHTsf~Q~~t~TGRL 334 (593)
T COG0749 261 PP-GL-KKTKTGNYSTDAEVLEKLADDHPLPKLILEYRQLAKLKSTYTDGLPKLIN----PDTGRIHTSFNQTGTATGRL 334 (593)
T ss_pred Cc-cc-cccCCCCCccHHHHHHHHhhcCccHHHHHHHHHHHHHHHHhhhccHHhhC----CCCCccCcchHHHHHHhhcc
Confidence 96 33 45554 49999999999999999999999999999999999999998876 34599999999999999999
Q ss_pred ccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCC
Q 000107 1885 SMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPH 1964 (2191)
Q Consensus 1885 Sss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g 1964 (2191)
||++||||||| +|++.|| .||++|+|+ +||.+++|||||||||||||+|+|+.|++||++ |
T Consensus 335 SSsdPNLQNIP------iRse~Gr-----------~IR~aFva~-~g~~~i~aDYSQIELRilAHls~D~~Ll~AF~~-g 395 (593)
T COG0749 335 SSSDPNLQNIP------IRSEEGR-----------KIRKAFVAE-KGYTLISADYSQIELRILAHLSQDEGLLRAFTE-G 395 (593)
T ss_pred cCCCCCcccCC------cCCHhHH-----------hhhhceeCC-CCCeEEEechHHHHHHHHHHhcCCHHHHHHHhc-C
Confidence 99999999998 8999999 899999997 999999999999999999999999999999998 9
Q ss_pred chHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Q 000107 1965 GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCH 2044 (2191)
Q Consensus 1965 ~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~ 2044 (2191)
.|||+.||+++||+|+++||+++|+.||++|||+|||||+++||++||||..||+.||++||++||||+.|+++++++|+
T Consensus 396 ~DiH~~TA~~vFgv~~~~Vt~e~Rr~AKaINFGiiYG~safgLa~~L~I~~~eA~~~I~~YF~rypgv~~ym~~~~~~ar 475 (593)
T COG0749 396 EDIHTATAAEVFGVPIEEVTSEQRRKAKAINFGLIYGMSAFGLAQQLGIPRKEAKEYIDRYFERYPGVKEYMERTKEEAR 475 (593)
T ss_pred ccHHHHHHHHHhCCChhhCCHHHhhhhhhhccceeeccchhhHHHHcCCChHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCcee
Q 000107 2045 QKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCR 2124 (2191)
Q Consensus 2045 ~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 2124 (2191)
++|||+|++|||||+|+|++.|...|+++||.|+|+|||||||||+|.|||.|+++|... +..+|
T Consensus 476 ~~GyV~Tl~gRRry~p~i~s~n~~~R~~aER~AiNaPIQGTAADiiK~AMI~vd~~l~~~---------------~~~~r 540 (593)
T COG0749 476 EDGYVETLFGRRRYLPDINSSNRVVRAAAERAAINAPIQGTAADIIKLAMIKVDKALKEE---------------KLKAR 540 (593)
T ss_pred HcCceeecccccccCcccccCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHhHHHHHhhc---------------chhhh
Confidence 999999999999999999999999999999999999999999999999999999999875 46889
Q ss_pred EEEEecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2125 lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|+|||||||+||||+++++++.++|+..||+|+.|.|||.|++.+|+||+++|
T Consensus 541 llLQVHDELvfEv~~~e~e~~~~~v~~~Me~a~~L~VPL~vdv~~g~nW~ea~ 593 (593)
T COG0749 541 LLLQVHDELVFEVPKEELEEVKKLLKAIMENAVNLSVPLEVDVGIGKNWDEAH 593 (593)
T ss_pred hHHhhhhhhhhcCcHhHHHHHHHHHHHHHHHhhccCCceEEecCCCcChhhcC
Confidence 99999999999999999999999999999999999999999999999999986
|
|
| >TIGR00593 pola DNA polymerase I | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-110 Score=1118.55 Aligned_cols=573 Identities=32% Similarity=0.474 Sum_probs=503.7
Q ss_pred CcccHHHHHHHHhhCCeEEEEeeccCCcccCCCcc--ceEEEEEEEEeC-CcEEEEeCCCCcccccccccchhccCCCCC
Q 000107 1494 ASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVL--FEIHGLAVCWEN-SPVYYVNLPKDLWSDHRRKDRFLIYGSSDK 1570 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~--~~i~Gia~~~~~-~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~ 1570 (2191)
+...+..|++. .....++++ +..+ ..++|++||+++ +.+||+++. .. . +..
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~~~---------- 362 (887)
T TIGR00593 309 EAAPLANPAEK-AEVGGFVLE----------RLLDQLKKALALAFATENQSYVAYASEA-DG--I--PLL---------- 362 (887)
T ss_pred CHHHHHHHHHh-CcCCeEEEc----------CcccccCceeEEEEEecCCCceEEEecc-cc--h--hhh----------
Confidence 34556666654 333456551 1222 368999999987 668999864 10 0 000
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCC
Q 000107 1571 NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLK 1650 (2191)
Q Consensus 1571 ~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 (2191)
.....+.|+++|+++.+.|++||+|||+++|+++|+.+.+.
T Consensus 363 -----------~~~~~~~l~~~l~~~~~~~v~~n~K~d~~~l~~~gi~~~~~---------------------------- 403 (887)
T TIGR00593 363 -----------TILTDDKFARWLLNEQIKKIGHDAKFLMHLLKREGIELGGV---------------------------- 403 (887)
T ss_pred -----------hHHHHHHHHHHHhCCCCcEEEeeHHHHHHHHHhCCCCCCCc----------------------------
Confidence 02334678899999999999999999999999999876542
Q ss_pred ccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---HHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000107 1651 DGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA---AAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLV 1727 (2191)
Q Consensus 1651 ~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~---~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~ 1727 (2191)
++|||||+|||+|+.. + +|+.++.++++.+. ....+....+.....+.+..||++|+.++++||..|.++|.
T Consensus 404 -~~Dt~la~yll~~~~~-~---~l~~la~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~d~~~~~~L~~~l~~~l~ 478 (887)
T TIGR00593 404 -IFDTMLAAYLLDPAQV-S---TLDTLARRYLVEELILDEKIGGKLAKFAFPPLEEATEYLARRAAATKRLAEELLKELD 478 (887)
T ss_pred -chhHHHHHHHcCCCCC-C---CHHHHHHHHcCcccccHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999753 4 46666666665432 12222111111111234678999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCC
Q 000107 1728 SEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI 1807 (2191)
Q Consensus 1728 ~~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~ 1807 (2191)
++++.++|.++|||++++|++||.+||+||.+.|+++..++.+++++++++|++++|.+||++||+||+++||++||||+
T Consensus 479 ~~~l~~l~~~iE~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~l~~le~~i~~~~g~~fN~~SpkQl~~~Lf~~lgl~~ 558 (887)
T TIGR00593 479 ENKLLSLYREIELPLSKVLAEMEKTGIKVDADYLQELSQEFGEEIADLEEEIYELAGEEFNINSPKQLGEVLFEKLGLPV 558 (887)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccC
Q 000107 1808 PEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887 (2191)
Q Consensus 1808 ~~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss 1887 (2191)
++ |+++++||++++|++|+..||++..|++||+++|+++||+++++.+++ ..+||||++|+|++|+||||||+
T Consensus 559 ~k---ktktg~ST~~~vL~~L~~~hp~~~~ileyR~l~Kl~sty~~~l~~~i~----~~tgRIh~~~~q~~t~TGRlSs~ 631 (887)
T TIGR00593 559 GK---KTKTGYSTDADVLEKLREKHPIIALILEYRQLTKLKSTYVDGLPELVN----PDTGRIHTTFNQTGTATGRLSSS 631 (887)
T ss_pred CC---CCCCCCCChHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCceeeeeEecccceeeeccc
Confidence 64 344459999999999999999999999999999999999999988764 33599999999999999999999
Q ss_pred CCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchH
Q 000107 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDV 1967 (2191)
Q Consensus 1888 ~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Di 1967 (2191)
+||||||| ++++.|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.||
T Consensus 632 ~PNLQNIP------~r~~~g~-----------~iR~~Fia~-~G~~lv~aDySQIELRilAhls~D~~Li~af~~-g~Di 692 (887)
T TIGR00593 632 NPNLQNIP------IRSEEGR-----------KIRKAFVAE-KGWLLISADYSQIELRVLAHLSQDENLIEAFQN-GEDI 692 (887)
T ss_pred CCCccccC------CCCcccc-----------hhhheEecC-CCCeEEEechhHhHHHHHHHHcCCHHHHHHHhc-CCCh
Confidence 99999999 4666777 799999996 999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcC
Q 000107 1968 FTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKG 2047 (2191)
Q Consensus 1968 h~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~G 2047 (2191)
|+.||+.|||+|+++||+++|+.||++|||++||||+++||+++|||.+||+++|++||++||+|++|++++++.|+++|
T Consensus 693 H~~tA~~~fg~~~e~vt~~~R~~AK~infGiiYG~g~~~La~~l~is~~eA~~~i~~yf~~yp~v~~~~~~~~~~a~~~G 772 (887)
T TIGR00593 693 HTETASRLFGVEIEDVTPNMRRIAKTINFGVVYGMSAFGLAQELGISRKEAKEFIERYFARYPGVKDYIENTVEEARKKG 772 (887)
T ss_pred HHHHHHHHhCCChhhCCHHHHhhhhHhhcCcccccchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEE
Q 000107 2048 YVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127 (2191)
Q Consensus 2048 yV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvl 2127 (2191)
||+|++|||||+|++++.|...|+.+||+|+|+|||||||||+|.||++++++|.+. +..++|||
T Consensus 773 yv~Tl~GRrr~lp~i~s~n~~~r~~aeR~A~N~~iQGsAADi~K~Ami~v~~~l~~~---------------~~~~~lvl 837 (887)
T TIGR00593 773 YVETLFGRRRYIPDINSRNRNVREAAERMAINAPIQGSAADIMKIAMIKLDKRLKER---------------KLKARLLL 837 (887)
T ss_pred cEEecCCCEeeCCCccccchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCeEEEe
Confidence 999999999999999999999999999999999999999999999999999999874 45689999
Q ss_pred EecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2128 QVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2128 qVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
||||||+||||++++++++.+|+++||++..|.|||.|++++|+||+++|
T Consensus 838 qVHDElv~Evp~~~~~~v~~~l~~~Me~a~~l~VPL~v~~~~G~~W~e~~ 887 (887)
T TIGR00593 838 QVHDELIFEAPEEEAEEVAALVKEVMEHAYPLAVPLEVEVGTGKNWGEAK 887 (887)
T ss_pred eEceEeeeecCHHHHHHHHHHHHHHHHhhcCCCCcEEEecCccCCHHhcC
Confidence 99999999999999999999999999999999999999999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-110 Score=1051.38 Aligned_cols=740 Identities=44% Similarity=0.720 Sum_probs=665.2
Q ss_pred CcCCcCCCCcHHHHHHHH-HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 501 DCLDLSSWLPSEICSIYK-KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 501 e~l~L~~~Lp~~l~~~l~-~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
..+....|+|+.+.+.+. .+|+..+|.||.+|+..+.+++++|+|+++||++|||+++++.|++.++..++++++++|+
T Consensus 199 l~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~ 278 (1008)
T KOG0950|consen 199 LLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPY 278 (1008)
T ss_pred hhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecce
Confidence 344555698888888765 5899999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
++.++++...+..++.++|+.|..++|........+..++.|||+|+.+.+++++++.+.+..+++|||||.||++|.+|
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 99999999999999999999999999888777777788999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEe
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~ 739 (2191)
|+.+|.+++++.|.+.. ..+||||||||++|...+++||++.+|.+.|||||+.+++++
T Consensus 359 g~~lE~~l~k~~y~~~~---------------------~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~ 417 (1008)
T KOG0950|consen 359 GAILELLLAKILYENLE---------------------TSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKP 417 (1008)
T ss_pred chHHHHHHHHHHHhccc---------------------cceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCC
Confidence 99999999999998643 238999999999999999999999999999999999999999
Q ss_pred ccccccc-hhhHHHHHH--HhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCch
Q 000107 740 GNAIYSK-KMDVVRTIL--TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816 (2191)
Q Consensus 740 ~~~~~~~-~~~~~r~l~--~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~ 816 (2191)
+..+|.. +...++.+. .....+..|+|+++.+|.+++.++.++||||++|++|+.+|..+...++........ ..
T Consensus 418 G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~--~~ 495 (1008)
T KOG0950|consen 418 GSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKR--LG 495 (1008)
T ss_pred CcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhh--hh
Confidence 9999998 777777776 344555678899999999999999999999999999999998888877654322110 11
Q ss_pred hhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC
Q 000107 817 FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896 (2191)
Q Consensus 817 ~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~ 896 (2191)
.-++.+..+.+++.+.++|+.|++++++||+|||+|++.++|+.|+.+|+.|.+.|++||+|+++|||+|++||||+.|+
T Consensus 496 ~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~ 575 (1008)
T KOG0950|consen 496 LWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY 575 (1008)
T ss_pred HHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc
Confidence 22456677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhh-HHHHHHHhcccccCH
Q 000107 897 IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMT-HAILEVVAGGIVQTA 975 (2191)
Q Consensus 897 ~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~-~~iLeiia~gi~~t~ 975 (2191)
.|.++++..+|+||+|||||+|.|+.|++|++|++.+.+.+.++++.+++++.|||.++.++.. +++|++|..+++.|.
T Consensus 576 ~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~ 655 (1008)
T KOG0950|consen 576 VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETA 655 (1008)
T ss_pred cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999987766554 889999999999999
Q ss_pred HHHHHHHHhhhcCCCCcchhHHHH----------HHHHHHHHHHccccee-ccCCCccCCCHHHHHHHhcCCChhhHHHH
Q 000107 976 EDIHRYVRCTLLNSTKPFQDVVKS----------AQDSLRWLCHRKFLEW-NEDTKLYSTTPLGRAAFGSSLCPEESLIV 1044 (2191)
Q Consensus 976 ~di~~~l~~tll~~~~~~~~~~~~----------~~~al~~L~~~~~i~~-~~~~~~~~~T~LG~a~~~s~L~p~~a~~l 1044 (2191)
+|+..|+.+||+..+..+....+. ....-+++....|+.. ..+...-.+|+||++++..+++|..|..+
T Consensus 656 ~di~~~va~tl~s~q~~~~~~~~~le~~s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l 735 (1008)
T KOG0950|consen 656 EDILHFVAVTLLSAQEKPENVREQLEMESDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANIL 735 (1008)
T ss_pred HHHHHHHHHhhhhcccchhhhhhcccchhhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHH
Confidence 999999999999987654332111 1112267777777762 21211224999999999999999999999
Q ss_pred HHHHhhhcccccccCccceeeeeccCCCCCC-CcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccc
Q 000107 1045 LDDLSRAREGFVLASDLHLVYLSTPINVEVE-PDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRD 1123 (2191)
Q Consensus 1045 ~~~L~~a~~~~vl~~dlhllylvtp~~~~~~-~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~ 1123 (2191)
+.+|++++.++|+++++|+||++||++..+. +||..|+..|++|+..++.+++.+|+.|.|+.++..|..+.
T Consensus 736 ~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~------- 808 (1008)
T KOG0950|consen 736 FADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVR------- 808 (1008)
T ss_pred HHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccc-------
Confidence 9999999999999999999999999988776 99999999999999999999999999999999999885321
Q ss_pred cccCccchhhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Q 000107 1124 STKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFC 1203 (2191)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc 1203 (2191)
+.+.+++|+|||++++|+++|+|.|++.|+++|||.||.||+||++|+.||+||+.||
T Consensus 809 ----------------------~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fc 866 (1008)
T KOG0950|consen 809 ----------------------NLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFC 866 (1008)
T ss_pred ----------------------cccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHH
Confidence 1245789999999999999999999999999999999999999999999999999999
Q ss_pred HHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhh
Q 000107 1204 ERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRR 1283 (2191)
Q Consensus 1204 ~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~ 1283 (2191)
++|+|.+++.++.+|..||+||++.||+|||++|++++.|||+||.|||+|+.+||+|+|.+|++.+..+.
T Consensus 867 e~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~~si--------- 937 (1008)
T KOG0950|consen 867 ESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELPISI--------- 937 (1008)
T ss_pred HHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000107 1284 VQLGVAKKIKNGARKIVLE 1302 (2191)
Q Consensus 1284 ~~~~~A~~I~~~A~~l~~~ 1302 (2191)
..+.|.+|+++|++.+.+
T Consensus 938 -~~~~a~~i~~s~~~~l~~ 955 (1008)
T KOG0950|consen 938 -SMKQATQIVASAKDELRK 955 (1008)
T ss_pred -cHHHhhhHHhhhhHHHHH
Confidence 456788888888887764
|
|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-101 Score=1048.39 Aligned_cols=580 Identities=33% Similarity=0.489 Sum_probs=513.9
Q ss_pred eeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCC
Q 000107 1490 NAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSD 1569 (2191)
Q Consensus 1490 ~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~ 1569 (2191)
..+.+...+..|++.+.....++||+|+.+. ......+++++++|.++.+||+++.+. +
T Consensus 297 ~~I~~~~~L~~~l~~l~~~~~~a~DtEt~~l----~~~~~~i~~i~ls~~~g~~~~ip~~~i----~------------- 355 (880)
T PRK05755 297 ETILDEEELEAWLAKLKAAGLFAFDTETTSL----DPMQAELVGLSFAVEPGEAAYIPLDQL----D------------- 355 (880)
T ss_pred EEeCCHHHHHHHHHHhhccCeEEEEeccCCC----CcccccEEEEEEEeCCCcEEEEecccc----c-------------
Confidence 4566778889999999888899999988643 122236899999999988999987531 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCC
Q 000107 1570 KNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHL 1649 (2191)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1649 (2191)
...++.|.++|+++.+.||+||+|||+.+|.++|+.+.+
T Consensus 356 -------------~~~l~~l~~~L~d~~v~kV~HNakfDl~~L~~~gi~~~~---------------------------- 394 (880)
T PRK05755 356 -------------REVLAALKPLLEDPAIKKVGQNLKYDLHVLARYGIELRG---------------------------- 394 (880)
T ss_pred -------------HHHHHHHHHHHhCCCCcEEEeccHhHHHHHHhCCCCcCC----------------------------
Confidence 023567888999999999999999999999988776543
Q ss_pred CccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---HHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1650 KDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA---AAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1650 ~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~---~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.++|||+|+||++|+.. + +|..++..+++.+. ....++...|.....+....||+.|+.++++||..|...|
T Consensus 395 -~~~DT~iAa~Ll~~~~~-~---~L~~L~~~ylg~~~~~~~~~~gk~~~~~~~ple~~~~YAa~Dv~~~~~L~~~L~~~L 469 (880)
T PRK05755 395 -IAFDTMLASYLLDPGRR-H---GLDSLAERYLGHKTISFEEVAGKQLTFAQVDLEEAAEYAAEDADVTLRLHEVLKPKL 469 (880)
T ss_pred -CcccHHHHHHHcCCCCC-C---CHHHHHHHHhCCCccchHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26999999999999753 4 46666666665542 1111211112111113467899999999999999999999
Q ss_pred HHH-HHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCC
Q 000107 1727 VSE-ELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805 (2191)
Q Consensus 1727 ~~~-~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~l 1805 (2191)
.+. +++.+|.++|||++.+|+.||.+||+||.++++++..+++++++++++++++++|.+||++||+|++++||++||+
T Consensus 470 ~~~~~l~~l~~eiE~p~~~~l~~me~~Gi~vD~~~~~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~L~~~lgl 549 (880)
T PRK05755 470 LEEPGLLELYEEIELPLVPVLARMERNGIKVDREYLKELSAELAQRLAELEQEIYELAGEEFNINSPKQLGEILFEKLGL 549 (880)
T ss_pred HhcccHHHHHHHhhchHHHHHHHHHhcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCC
Confidence 875 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccc
Q 000107 1806 PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLS 1885 (2191)
Q Consensus 1806 p~~~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlS 1885 (2191)
|+.+ +++.++||++++|++|...||++..|+|||++.|+++||++++.+++. ..+||||++|+|+||+|||||
T Consensus 550 ~~~~---kt~~g~st~~~~L~~l~~~~p~~~~lle~r~~~kl~sty~~~l~~~~~----~~~~rih~~~~~~~t~TGRls 622 (880)
T PRK05755 550 PVGK---KTKTGYSTDAEVLEKLADDHPIPDKILEYRQLSKLKSTYTDALPKLIN----PDTGRIHTSFNQTVTATGRLS 622 (880)
T ss_pred CCCC---CCCCCCCCcHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCeecceEeecccceeeee
Confidence 8653 344459999999999998999999999999999999999999987664 334699999999999999999
Q ss_pred cCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCc
Q 000107 1886 MEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHG 1965 (2191)
Q Consensus 1886 ss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~ 1965 (2191)
|++|||||||+ ++..|+ .+|++|+|+ +||+||++||||||||||||||+|+.|+++|++ |.
T Consensus 623 s~~PnlQniP~------~~~~~~-----------~iR~~f~~~-~G~~lv~~DysqiElRilA~ls~D~~l~~~~~~-g~ 683 (880)
T PRK05755 623 SSDPNLQNIPI------RTEEGR-----------RIRKAFVAP-EGYKLLSADYSQIELRILAHLSGDEGLIEAFAE-GE 683 (880)
T ss_pred ccCCCcccCCC------CCccch-----------hhhheEecC-CCCEEEEechhhhHHHHHHHHcCCHHHHHHHhc-CC
Confidence 99999999995 333444 799999996 999999999999999999999999999999998 89
Q ss_pred hHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHh
Q 000107 1966 DVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQ 2045 (2191)
Q Consensus 1966 Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~ 2045 (2191)
|+|+.+|+.|||+++++|++++|+.||++|||++||||+++||+++|+|.+||++++++||++||+|++|++++.++|++
T Consensus 684 Dih~~~A~~~~~~~~~~v~~~~R~~aK~~~fg~~YG~g~~~la~~l~is~~eA~~~~~~~~~~~p~v~~~~~~~~~~a~~ 763 (880)
T PRK05755 684 DIHTATASEVFGVPLEEVTSEQRRRAKAINFGIIYGMSAFGLAQQLGISRKEAKEYIDRYFERYPGVKEYMERTVEQARE 763 (880)
T ss_pred CHHHHHHHHHhCCChhhCCHHHHHHHHHHhcchhhCCChHHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeE
Q 000107 2046 KGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRL 2125 (2191)
Q Consensus 2046 ~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l 2125 (2191)
+|||+|++||||++|++++.+...|+.++|+|+|++||||||||+|.||+++++.+... +.+++|
T Consensus 764 ~g~v~t~~GR~r~~p~~~~~~~~~~~~~~r~a~N~~iQgsaAdi~k~am~~~~~~l~~~---------------~~~~~l 828 (880)
T PRK05755 764 KGYVETLFGRRRYLPDINSRNGNRRAFAERAAINAPIQGSAADIIKLAMIRVDKALKEE---------------GLKSRM 828 (880)
T ss_pred cCCEECCCCCeEeCCcccCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCceE
Confidence 99999999999999999999999999999999999999999999999999999998763 456899
Q ss_pred EEEecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2126 LLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2126 vlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
++||||||+||||++.+++++++|+++||++..+.|||.|++++|+|||++|
T Consensus 829 ~l~vHDel~~ev~~~~~~~~~~~~~~~me~~~~l~vpl~v~~~~g~~W~~~~ 880 (880)
T PRK05755 829 LLQVHDELVFEVPEDELEEVKKLVKEVMENAVELSVPLVVDVGVGDNWDEAH 880 (880)
T ss_pred EEEEcceeEEEeCHHHHHHHHHHHHHHHhCcccCCceEEEeCCcCCChHhcC
Confidence 9999999999999999999999999999999999999999999999999987
|
|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=910.83 Aligned_cols=460 Identities=23% Similarity=0.304 Sum_probs=420.0
Q ss_pred cchHHHHHHhcCCCCC--CCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1652 GIDMCIVSWILWPDDE--RSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1652 ~~Dt~lAawLL~P~~~--~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
.|||+||+|||+++.. .+ ++..++..+++.+..+...+ ..|...+.+....|++.|+.++++||..|..+|.+.
T Consensus 72 ~fDT~LAa~lL~~~~~~~~~---~l~~la~~~l~~~l~k~~~~-sdw~rpls~~q~~YAa~Dv~~l~~L~~~L~~qL~~~ 147 (553)
T PRK14975 72 CHDLMLASQLLLGSEGRAGS---SLSAAAARALGEGLDKPPQT-SALSDPPDEEQLLYAAADADVLLELYAVLADQLNRI 147 (553)
T ss_pred CchHHHHHHHcCCCCCcCCC---CHHHHHHHHhCCCCCChhhh-ccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 4999999999999653 34 46666777776554322222 235444455567899999999999999999999876
Q ss_pred ------HHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHH----------HHHHHHHHHHHHHhCCc-CCCCCH
Q 000107 1730 ------ELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQ----------KKLRYLEKKAYTLAGMK-FSLYTA 1792 (2191)
Q Consensus 1730 ------~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~----------~~l~~le~~i~~l~G~~-fnl~S~ 1792 (2191)
++..+|.++|||++.+|+.||.+||+||.+.++++..++. ++++++++++++++|.+ ||++||
T Consensus 148 ~~~~~~g~l~ll~~~E~~~~~~l~~me~~Gi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~g~~~~n~~S~ 227 (553)
T PRK14975 148 AAAAHPGRLRLLAAAESAGALAAAEMELAGLPWDTDVHEALLAELLGPRPAAGGRPARLAELAAEIREALGRPRLNPDSP 227 (553)
T ss_pred hcccchhHHHHHHHHHhhHHHHHHHHHHhCeEeCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999999999999999999999999999999999999999 88999999999999986 999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeecc
Q 000107 1793 ADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHG 1872 (2191)
Q Consensus 1793 ~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~ 1872 (2191)
+||+++| +++|+|. ++|++++| +...||++..|++||++.|+++||+.++...+. .|||||+
T Consensus 228 ~ql~~~L-~~~g~~~----------~~t~~~~L--~~~~hp~~~~ile~r~~~kl~st~~~~~~~~~~-----~~grih~ 289 (553)
T PRK14975 228 QQVLRAL-RRAGIEL----------PSTRKWEL--REIDHPAVEPLLEYRKLSKLLSANGWAWLDYWV-----RDGRFHP 289 (553)
T ss_pred HHHHHHH-HHCCCCC----------CCCcHHHh--ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCcccc
Confidence 9999999 7899973 25778999 445799999999999999999999988766542 5799999
Q ss_pred ccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcC
Q 000107 1873 HWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK 1952 (2191)
Q Consensus 1873 ~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~ 1952 (2191)
+|+|+||+||||||++|||||||| .+|++|+|+ +||+||++||||||+|||||||+
T Consensus 290 ~~~~~gt~TGRlss~~pnlQniP~-----------------------~iR~~f~a~-~G~~lv~aDysqiElRvlA~ls~ 345 (553)
T PRK14975 290 EYVPGGVVTGRWASRGPNAQQIPR-----------------------DIRSAFVAD-PGWKLVVADASQIELRVLAAYSG 345 (553)
T ss_pred eeeecceeecccccCCCccccCCH-----------------------HHhceEEcC-CCCEEEEechhhhHHHHHHHHcC
Confidence 999999999999999999999996 599999996 99999999999999999999999
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhH
Q 000107 1953 DPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGV 2032 (2191)
Q Consensus 1953 D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v 2032 (2191)
|+.|+++|++ |.|+|+.||+.|||+++++ +++|+.||++|||++||||+++|++++| +.+||+.++++||++||+|
T Consensus 346 D~~l~~~~~~-g~Dih~~~A~~~~~~~~~~--~~~R~~aK~~~~g~~YG~g~~~l~~~~~-~~~ea~~~~~~~~~~~p~v 421 (553)
T PRK14975 346 DERMIEAFRT-GGDLHRLTASVGFGKPEEE--KEERALAKAANFGAIYGATSKGLQEYAK-NYGEAARLLERLRRAYPRA 421 (553)
T ss_pred CHHHHHHHhc-CCCHHHHHHHHHhCCCccc--hhHHHHHHHHHHHhhhCCcHHHHHHHcC-CHHHHHHHHHHHHHHCccH
Confidence 9999999998 8999999999999999888 8999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChh
Q 000107 2033 ASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSL 2112 (2191)
Q Consensus 2033 ~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~ 2112 (2191)
++|++.+++.|+++|||+|++||||++|++++.+...++.++|+|+|++||||||||+|.||++++++|..
T Consensus 422 ~~~~~~~~~~a~~~g~v~T~~GR~~~~~~~~~~~~~~~~~~~r~a~N~~iQGsaAdi~k~am~~~~~~l~~--------- 492 (553)
T PRK14975 422 VGWVERAAREGERGGVVRTLLGRTSPPPGFAWRARRRARSRGRFTRNFPVQGTAADWAKLALALLRRRLAE--------- 492 (553)
T ss_pred HHHHHHHHHHHHHCCeEECCCCCeecCCCccccChhHHhHhhhhhcCccchhHHHHHHHHHHHHHHHHHhh---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred hhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHHHHHHhcccCc---ccceEEEeeccCCccccC
Q 000107 2113 AANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALL---LVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2113 ~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l---~VPL~v~~~iG~sW~~~~ 2177 (2191)
+.+++||+||||||+||||++.+++++++|+++||++..+ .|||+|++++|+||+++|
T Consensus 493 -------~~~~~lvl~vHDEl~~e~~~~~~~~~~~~i~~~M~~a~~~~~~~Vpl~v~~~~g~~w~~~~ 553 (553)
T PRK14975 493 -------GLDAELVFFVHDEVVVECPEEEAEEVAAAIEEAMEEAGRLLFGPVPFPVEVAVVESYAEAK 553 (553)
T ss_pred -------cCCcEEEEEecceeEEEecHHHHHHHHHHHHHHHHHHHhccCCCccEEEecCccCCHhhcC
Confidence 2467999999999999999999999999999999999876 499999999999999986
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-85 Score=881.82 Aligned_cols=689 Identities=30% Similarity=0.461 Sum_probs=557.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.|++.||.+|||||.+|++. ++.+|+|++++||||||||++|++++++.+. .++++|||+|+++||.|+++
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~-~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEA-GLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFE 85 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHH-HHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHH
Confidence 789999999999999999999999974 4788999999999999999999999999886 57899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
.|+.+ ..+|++|..++|+..... .....+|+|||||+++.++++ ...+++++++|||||+|++++.+||+.+|.++
T Consensus 86 ~~~~~-~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~~rg~~le~il 162 (737)
T PRK02362 86 EFERF-EELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSANRGPTLEVTL 162 (737)
T ss_pred HHHHh-hcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCCcchHHHHHHH
Confidence 99874 456899999999864321 234579999999999999986 44578999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
++++++. +.+|+|+||||++|++++++|+++.++...+||+++..++..........
T Consensus 163 ~rl~~~~-----------------------~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~ 219 (737)
T PRK02362 163 AKLRRLN-----------------------PDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD 219 (737)
T ss_pred HHHHhcC-----------------------CCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc
Confidence 9998752 45899999999999999999999999999999999998776443322111
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
.. ........+....++.+.+..++++||||+|++.|+.+|..|...+..... ..+...+....+.+
T Consensus 220 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~-----~~~~~~~~~~~~~l 286 (737)
T PRK02362 220 SQ--------REVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLT-----AAERAELAELAEEI 286 (737)
T ss_pred cc--------ccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHH
Confidence 00 000111123455666666777899999999999999999999876542110 11222333444455
Q ss_pred hcC-CCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec-----CCCCCcc
Q 000107 828 RRC-PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ-----PRIGRDF 901 (2191)
Q Consensus 828 ~~~-~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~-----p~~g~~~ 901 (2191)
... ....+..|.+++.+||++|||||++++|+.|++.|++|.++|||||+++++|||+|+++|||+. +..|..+
T Consensus 287 ~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 287 REVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred HhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 332 2335789999999999999999999999999999999999999999999999999999999974 2234567
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChh-hH-HHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHH
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EV-KKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~-~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~ 979 (2191)
++..+|+||+|||||+|+|..|+||++|.+. +. +.+..++....++++|+|..+ ..+...++..|+.|.+.+.+|+.
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~-~~l~~~lla~I~~~~~~~~~d~~ 445 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATE-PALRTHVLSTIASGFARTRDGLL 445 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCCh-hhHHHHHHHHHHhCccCCHHHHH
Confidence 8999999999999999999999999999874 33 345678877788999999643 35777899999999999999999
Q ss_pred HHHHhhhcCCCCcch-hHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhccccccc
Q 000107 980 RYVRCTLLNSTKPFQ-DVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLA 1058 (2191)
Q Consensus 980 ~~l~~tll~~~~~~~-~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~ 1058 (2191)
+|+.+||++.+.... ...+.+..+|++|.+.|||+.+. +.+.+|++|++++.++|+|.++..+.+.|+.... .
T Consensus 446 ~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~----~ 519 (737)
T PRK02362 446 EFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKK----P 519 (737)
T ss_pred HHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhccc----C
Confidence 999999999876533 34466889999999999998643 3589999999999999999999999999987654 2
Q ss_pred CccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhhcc
Q 000107 1059 SDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGI 1138 (2191)
Q Consensus 1059 ~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1138 (2191)
++.++||+++.. ++|..++.+..+.+.+.+ ++.. +...+. . .++.++.
T Consensus 520 ~~~~~l~~i~~~-----~e~~~~~~r~~e~~~l~~-----------~~~~--~~~~~~--~-------~~p~~~~----- 567 (737)
T PRK02362 520 TDLGLLHLVCST-----PDMYELYLRSGDYEWLNE-----------YLYE--HEDELL--G-------DVPSEFE----- 567 (737)
T ss_pred chHHHHHHhhcC-----ccccccccChhHHHHHHH-----------HHHh--cccchh--c-------cCCchhh-----
Confidence 678899988764 676666554443322221 1100 000000 0 0000000
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Q 000107 1139 TSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKF 1218 (2191)
Q Consensus 1139 ~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~ 1218 (2191)
.. .....+.+|++|++|++||+|+|+.+|+++||+.+|+||+++++|.|+++++..||+.++ +.++.++..|
T Consensus 568 ----~~---~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~-~~~~~~~~~l 639 (737)
T PRK02362 568 ----DD---EFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASELD-LDLARAAREL 639 (737)
T ss_pred ----hh---hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 00 111234688999999999999999999999999999999999999999999999999876 5788999999
Q ss_pred HHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1219 QNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1219 ~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
++||.|||++|++||++||||++.|||+||++||+|+.||+.+++++|++++ +.++|.+|+++++.
T Consensus 640 ~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~--------------g~~~~~~i~~~~~~ 705 (737)
T PRK02362 640 EKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAIL--------------GEKIAENILEQAGR 705 (737)
T ss_pred HHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHH--------------CHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999983 45789999998764
Q ss_pred H
Q 000107 1299 I 1299 (2191)
Q Consensus 1299 l 1299 (2191)
.
T Consensus 706 ~ 706 (737)
T PRK02362 706 R 706 (737)
T ss_pred c
Confidence 3
|
|
| >cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-85 Score=812.26 Aligned_cols=377 Identities=41% Similarity=0.608 Sum_probs=357.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhhcCCcHH
Q 000107 1757 DMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVP 1836 (2191)
Q Consensus 1757 D~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~~hpi~~ 1836 (2191)
|.++|+++.+++.++++++++++++++|..||++||+||+++||++||||+++ +++.+.+|++++|+.|.+.||+++
T Consensus 1 d~~~l~~~~~~~~~~~~~l~~~~~~l~g~~fn~~S~~qv~~~L~~~lgl~~~~---~t~~~~~t~~~~L~~l~~~~p~~~ 77 (377)
T cd08637 1 DTEYLEELSEELEKELAELEEEIYELAGEEFNINSPKQLGEVLFEKLGLPVGK---KTKTGYSTDAEVLEKLADEHPIVE 77 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCC---cCCCCCCchHHHHHhhhhcChHHH
Confidence 78999999999999999999999999999999999999999999999999764 344456899999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCccccc
Q 000107 1837 VIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDH 1916 (2191)
Q Consensus 1837 ~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~ 1916 (2191)
+|+|||++.|+++||++++.+++. ..|||||++|+|+||+||||||++|||||||+. +..|+
T Consensus 78 ~lle~r~l~k~~~t~~~~l~~~~~----~~dgrih~~~~~~gt~TGRlS~~~PNlQniP~~------~~~~~-------- 139 (377)
T cd08637 78 LILEYRELTKLKSTYVDALPKLIN----PKTGRIHTSFNQTVTATGRLSSSDPNLQNIPIR------TEEGR-------- 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----CCCCceeeeeeeccccccchhcccCccccCCCC------ccchH--------
Confidence 999999999999999999877653 248999999999999999999999999999962 22343
Q ss_pred ccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhh
Q 000107 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIY 1996 (2191)
Q Consensus 1917 ~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~f 1996 (2191)
.+|++|+|+ +||+||++||||||||||||||+|+.|+++|++ |.|+|+.+|+.|+|+|+++|++++|+.||+++|
T Consensus 140 ---~~R~~f~~~-~G~~lv~aDysqiElRilA~ls~D~~l~~~~~~-g~Dih~~~A~~~~g~~~~~v~~~~R~~aK~~~~ 214 (377)
T cd08637 140 ---EIRKAFVAE-EGWVLLSADYSQIELRILAHLSGDEALIEAFKN-GEDIHTRTAAEVFGVPPEEVTPEMRRIAKAVNF 214 (377)
T ss_pred ---hHHHheeCC-CCCEEEEechhHhHHHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhCCHHHHhhhhHhhc
Confidence 799999997 899999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred hhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhh
Q 000107 1997 GILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQ 2076 (2191)
Q Consensus 1997 GiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRq 2076 (2191)
|++||||+++||+++|+|.+||++++++||++||+|++|++++++.|+++|||+|++||||++|++++.+...++.++|+
T Consensus 215 g~~YG~g~~~la~~lg~s~~eA~~~~~~f~~~~p~v~~~~~~~~~~a~~~g~v~t~~GRrr~~~~~~~~~~~~r~~~~r~ 294 (377)
T cd08637 215 GIIYGISAFGLSQQLGISRKEAKEYIDRYFARYPGVKEYMEETVEEAREKGYVETLFGRRRYIPEINSKNRNVRAFAERI 294 (377)
T ss_pred chhcCcchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcCcEEccCCCEEeCCcccCCcHHHhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHHHHHHhcc
Q 000107 2077 AVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA 2156 (2191)
Q Consensus 2077 AvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a 2156 (2191)
|+|++||||||||+|.||+++++.|... +.+++|++||||||+||||++.+++++++|+++|+++
T Consensus 295 a~N~~iQGsaAdi~k~am~~~~~~l~~~---------------~~~~~lvl~vHDEl~~ev~~~~~~~~~~~l~~~M~~~ 359 (377)
T cd08637 295 AINTPIQGTAADIIKLAMIRVHKALKEE---------------GLKARMLLQVHDELVFEVPEEELEEVAALVKEEMENA 359 (377)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHhc---------------CCCeEEEeeEeeeeeEecCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999874 4578999999999999999999999999999999999
Q ss_pred cCcccceEEEeeccCCcc
Q 000107 2157 ALLLVPLLVKIQVGSTWG 2174 (2191)
Q Consensus 2157 ~~l~VPL~v~~~iG~sW~ 2174 (2191)
..+.|||.|+++||+|||
T Consensus 360 ~~l~VPl~v~~~ig~~W~ 377 (377)
T cd08637 360 VELSVPLKVDVGVGKNWG 377 (377)
T ss_pred ccCCCcEEEecccCCCCC
Confidence 999999999999999997
|
Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-81 Score=839.99 Aligned_cols=657 Identities=28% Similarity=0.415 Sum_probs=536.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.+.+.||. |++||.+|++. +.+++|++++||||||||++|++++++.+.. ++++||++|+++||.|+++
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~--l~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~ 83 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQ--LRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHH--HhcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHH
Confidence 889999999999996 99999999987 8999999999999999999999999988764 7789999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+|.++ ..+|.+|...+|+.... ......+|+|+|||+++.+++++ ..+++++++|||||+|++++.+||..++.++
T Consensus 84 ~~~~l-~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~--~~~l~~v~lvViDEaH~l~d~~rg~~le~ll 160 (674)
T PRK01172 84 ELSRL-RSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD--PYIINDVGLIVADEIHIIGDEDRGPTLETVL 160 (674)
T ss_pred HHHHH-hhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC--hhHHhhcCEEEEecchhccCCCccHHHHHHH
Confidence 99875 46789998888876432 12346799999999999999873 3468899999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
.++++. .+++|+|+||||++|..++++|+++..+...+||+|++..+......+...
T Consensus 161 ~~~~~~-----------------------~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 161 SSARYV-----------------------NPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred HHHHhc-----------------------CcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecc
Confidence 998765 246899999999999999999999999999999999987665433222110
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
. ......+..++.+....++++||||+|++.|+.+|..|.+.+....... . .
T Consensus 218 ~-------------~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~---------~------~ 269 (674)
T PRK01172 218 Y-------------ERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFK---------V------S 269 (674)
T ss_pred c-------------ccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccc---------c------c
Confidence 0 0011124456666667789999999999999999999987654321000 0 0
Q ss_pred hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC-C---CCCcccC
Q 000107 828 RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP-R---IGRDFID 903 (2191)
Q Consensus 828 ~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p-~---~g~~~is 903 (2191)
.......+..|.+++++||++|||||+.++|..|++.|++|.++|||||+++++|||+|+++|||+.. + .+..+++
T Consensus 270 ~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s 349 (674)
T PRK01172 270 SENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLS 349 (674)
T ss_pred ccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCC
Confidence 01123347789999999999999999999999999999999999999999999999999999998642 1 2345689
Q ss_pred cccccccccccCCCCCCCceEEEEEeChhh-HHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHH
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICKPEE-VKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l 982 (2191)
..+|.||+|||||.|+|..|.+++++...+ ...+.+++....+|++|+|..... +...+|..|+.|.+.+.+|+.+|+
T Consensus 350 ~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~-~~~~~l~~i~~g~~~~~~d~~~~l 428 (674)
T PRK01172 350 NMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRK-VRFNTLAAISMGLASSMEDLILFY 428 (674)
T ss_pred HHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCccc-HHHHHHHHHHhcccCCHHHHHHHH
Confidence 999999999999999999999999987644 677888897778899999975433 334478899999999999999999
Q ss_pred HhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccc
Q 000107 983 RCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLH 1062 (2191)
Q Consensus 983 ~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlh 1062 (2191)
.+||++.+.+.....+.++.++++|.+.|||+.+ ..+.+|++|++++.+||+|.++..+.+.|+... ++.+
T Consensus 429 ~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~------~~~~ 499 (674)
T PRK01172 429 NETLMAIQNGVDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDY------DEDL 499 (674)
T ss_pred HhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccC------CHHH
Confidence 9999988765444567789999999999999732 247899999999999999999999999997653 4456
Q ss_pred eeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhhccccCC
Q 000107 1063 LVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNN 1142 (2191)
Q Consensus 1063 llylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1142 (2191)
+|++++.. +++... +..+. ..+.+.+...+. .
T Consensus 500 ~l~~~~~~-----~e~~~~--~~~~~---------------~~~~~~~~~~~~----------------~---------- 531 (674)
T PRK01172 500 ALYYISLC-----REIIPA--NTRDD---------------YYAMEFLEDIGV----------------I---------- 531 (674)
T ss_pred HHHHhhcC-----cccccc--ccchH---------------HHHHHHHHHhcc----------------c----------
Confidence 66666543 232000 00000 111111110000 0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Q 000107 1143 MLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRV 1222 (2191)
Q Consensus 1143 ~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL 1222 (2191)
+ .. ..+++++++|++|++|++++.|+++|++.+|+||+++++++|+++++.+||+.+ +..+..+|..|+.||
T Consensus 532 ---~-~~---~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l~~~~~rl 603 (674)
T PRK01172 532 ---D-GD---ISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKLEILNIRI 603 (674)
T ss_pred ---c-ch---hHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 0 01 136889999999999999999999999999999999999999999999999875 578899999999999
Q ss_pred hccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000107 1223 SFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVL 1301 (2191)
Q Consensus 1223 ~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~ 1301 (2191)
.|||++|++|||+||||++.|||+||++||+|+.||++++++++.+++ +++.++|++|+++|++++.
T Consensus 604 ~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~------------~~~~~~~~~i~~~~~~~~~ 670 (674)
T PRK01172 604 KEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIY------------GFSDTLANAIVNRAMKISS 670 (674)
T ss_pred HcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHh------------ccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 4677899999999999973
|
|
| >PF00476 DNA_pol_A: DNA polymerase family A; InterPro: IPR001098 Synonym(s): DNA nucleotidyltransferase (DNA-directed) DNA-directed DNA polymerases(2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-83 Score=797.23 Aligned_cols=382 Identities=40% Similarity=0.603 Sum_probs=355.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhh-cCCc
Q 000107 1756 VDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRH-EHPI 1834 (2191)
Q Consensus 1756 vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~-~hpi 1834 (2191)
||.++|+.+..++..++++++.+++++.|.+||++||+|++++||+++|+|+.+.+ +.++++||++++|++|.. .||+
T Consensus 1 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~fN~~S~~q~~~~L~~~lgl~~~~~t-~~~g~~st~~~~L~~l~~~~~~~ 79 (383)
T PF00476_consen 1 VDREYLEQQSEELDAKLRELEAKAYKLAGEEFNPNSPKQLAEVLFEELGLPPTKKT-KKKGKPSTDKEVLKKLAEDAHPI 79 (383)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSTTTHHHHHHHHHTTSSSTTSSBE-TTCSEBHCTHHHHHHHCCCCHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhHHhcCCccCCCCHHHHHHHHHHcCCCCCCCCC-cccchhhhHHHHHHHhhhhhhhh
Confidence 79999999999999999999999999999999999999999999999999965432 223679999999999998 8999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCccc
Q 000107 1835 VPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEV 1914 (2191)
Q Consensus 1835 ~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~ 1914 (2191)
+.++++||++.|+.++|++.+...+. ..||||||+|+|+||+|||+||++|||||||+.. ..|.
T Consensus 80 ~~~~l~~r~~~kl~~~~~~~~~~~~~----~~dgrih~~~~~~gt~TGRls~~~PNlQniP~~~------~~~~------ 143 (383)
T PF00476_consen 80 AKLLLEYRKLSKLRSTYIDNLLDKVD----PEDGRIHPSFNQTGTATGRLSSSNPNLQNIPKRD------PYGK------ 143 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHSB----TTTTEE--EEESSSSSSS--EEESSCTSSSSSSS------HHHH------
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHhcc----ccCCeecceeeecccccCCceeechhhhcccccc------ccCc------
Confidence 99999999999999999998865442 4689999999999999999999999999999732 2333
Q ss_pred ccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchh
Q 000107 1915 DHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRL 1994 (2191)
Q Consensus 1915 ~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i 1994 (2191)
.+|++|+|+ +||+||++||||||||||||||+|+.|+++|.+ |.|+|+.+|+.|||++.++|++++|+.||++
T Consensus 144 -----~~R~~f~a~-~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~-g~D~h~~~a~~~~~~~~~~v~~~~R~~aK~~ 216 (383)
T PF00476_consen 144 -----EIRSAFVAP-PGYVLVSADYSQIELRVLAHLSGDENLIEAFRN-GEDIHTETASDIFGKPYEEVTKEERQKAKTV 216 (383)
T ss_dssp -----GGGGGEEGS-STEEEEEEEESSHHHHHHHHHHTHHHHHHHHHT-TCCHHHHHHHHHTTCHGGGTTHHHHHHHHHH
T ss_pred -----ccceeEecC-ccceeeeeehhhhhHHHHHHhcccHHHHHhhcc-cccHHHHHHHHhcCCCccccchhhHHHHhHH
Confidence 799999997 999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred hhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhhh
Q 000107 1995 IYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQ 2074 (2191)
Q Consensus 1995 ~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~ae 2074 (2191)
|||++||||+++||+.+|+|.+||++++++||++||+|++|++++.+.|+++|||+|++||||++|++++.+...++.++
T Consensus 217 ~~g~~YG~g~~~la~~l~~s~~eA~~~~~~f~~~~p~v~~~~~~~~~~a~~~g~v~t~~gr~r~~p~~~~~~~~~~~~~~ 296 (383)
T PF00476_consen 217 NFGLIYGMGAKGLAEQLGISEEEAKELIDAFFEAFPGVKKWMERVKKRARENGYVETLFGRRRYLPNIDSRNKSLRASAE 296 (383)
T ss_dssp HHHHHTT-THHHHHHHHTSCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTSSEEECGGGGSSSHHHHHHHH
T ss_pred HHhhhhccCHHHHHHHccCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHhcCCeEEEeccccccCCchhcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHHHHHHh
Q 000107 2075 RQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCME 2154 (2191)
Q Consensus 2075 RqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me 2154 (2191)
|+|+|++||||||||+|.||+++++.+.+. +.+.+|++||||||+||||++.+++++++|+++|+
T Consensus 297 r~a~N~~iQgsaAdi~k~am~~i~~~l~~~---------------~~~~~l~l~VHDEli~ev~~~~~~~v~~~l~~~M~ 361 (383)
T PF00476_consen 297 RQAVNTPIQGSAADIMKLAMIRIHEALREK---------------GLGARLVLQVHDELIFEVPEDEAEEVAEILKEIME 361 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------T-SEEEEEEESSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCceeEEEEcCeeheeecHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999874 45779999999999999999999999999999999
Q ss_pred cccCcccceEEEeeccCCcccc
Q 000107 2155 SAALLLVPLLVKIQVGSTWGSL 2176 (2191)
Q Consensus 2155 ~a~~l~VPL~v~~~iG~sW~~~ 2176 (2191)
++..+.|||.|++++|+||+++
T Consensus 362 ~~~~~~vPl~~~~~iG~~W~~~ 383 (383)
T PF00476_consen 362 NAGELRVPLPVEVEIGKNWGEA 383 (383)
T ss_dssp TSSHHSSCTCEEEEEESSTTTH
T ss_pred hhccCCCeEEeecCCCCChhcC
Confidence 9999999999999999999985
|
7.7.7 from EC) are the key enzymes catalysing the accurate replication of DNA. They require either a small RNA molecule or a protein as a primer for the de novo synthesis of a DNA chain. A number of polymerases belong to this family [, , ].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A .... |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-80 Score=830.07 Aligned_cols=684 Identities=27% Similarity=0.428 Sum_probs=544.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
+|+.+.+.+++.||.+|+|+|.+||+. .+++|+|++++||||||||++|++++++.+...++++|||+|+++||.|+++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~-~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKS-GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYR 86 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHH-HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHH
Confidence 789999999999999999999999974 4789999999999999999999999999988788899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
.|..+ ..+|++|..++|+.... .....++|+|+|||+++.++++ ...+++++++|||||+|++++.+||..++.++
T Consensus 87 ~~~~~-~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le~il 163 (720)
T PRK00254 87 EFKDW-EKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLEMIL 163 (720)
T ss_pred HHHHH-hhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHHHHH
Confidence 99874 56799999999987532 2234689999999999999875 44578999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
+++. ..+|+|+||||++|+.++++|+++..+...+||+|+...+......+...
T Consensus 164 ~~l~--------------------------~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 164 THML--------------------------GRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred HhcC--------------------------cCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccC
Confidence 8761 35799999999999999999999999999999999976554332222111
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
... .........++.+.+..++++||||+||+.|+.+|..|.+.+...-. ..+...+....+.+
T Consensus 218 ~~~-----------~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~-----~~~~~~~~~~~~~~ 281 (720)
T PRK00254 218 GKI-----------ERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLT-----KPELRALKELADSL 281 (720)
T ss_pred cch-----------hcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHH
Confidence 100 00112334555566667889999999999999999999876542110 01112223333333
Q ss_pred hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC----CCCcccC
Q 000107 828 RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR----IGRDFID 903 (2191)
Q Consensus 828 ~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~----~g~~~is 903 (2191)
... ..+..|.+++.+||++|||||++++|..|++.|++|.++|||||+++++|||+|+++|||.... .+...++
T Consensus 282 ~~~--~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~ 359 (720)
T PRK00254 282 EEN--PTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIP 359 (720)
T ss_pred hcC--CCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCC
Confidence 322 2367899999999999999999999999999999999999999999999999999999996432 2334567
Q ss_pred cccccccccccCCCCCCCceEEEEEeChhh-HHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHH
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICKPEE-VKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l 982 (2191)
..+|+||+|||||+|+|..|++|++++..+ .+.+..++...++++.+.+..+. .+...++..|+.+.+.+.+|+.+|+
T Consensus 360 ~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es-~l~~~ll~~i~~~~~~~~~~~~~~l 438 (720)
T PRK00254 360 VLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNES-AFRSQVLALITNFGVSNFKELVNFL 438 (720)
T ss_pred HHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchH-HHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 889999999999999999999999998755 34466788777777878875433 4667789999999999999999999
Q ss_pred HhhhcCCCCcc-hhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCcc
Q 000107 983 RCTLLNSTKPF-QDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061 (2191)
Q Consensus 983 ~~tll~~~~~~-~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dl 1061 (2191)
.+||++.+.+. ......+++++++|.+.+||+.+++ ..+.+|++|++++.++++|.++..+.+.|+..... .++.
T Consensus 439 ~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~-~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~---~~~~ 514 (720)
T PRK00254 439 ERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLE-DRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKN---PNPL 514 (720)
T ss_pred HhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCC-CCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccC---CCHH
Confidence 99999876543 2344567889999999999997643 35899999999999999999999999999875432 3567
Q ss_pred ceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhhccccC
Q 000107 1062 HLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSN 1141 (2191)
Q Consensus 1062 hllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1141 (2191)
++||+++.. ++|..+..+..+.+.+.....+. ..++....|.
T Consensus 515 ~~l~~~~~~-----~e~~~~~~r~~e~~~l~~~~~~~-------~~~l~~~~~~-------------------------- 556 (720)
T PRK00254 515 GIFQLIAST-----PDMTPLNYSRKEMEDLLDEAYEM-------EDRLYFNIPY-------------------------- 556 (720)
T ss_pred HHHHHhhCC-----ccccccCcchhhHHHHHHHHHhh-------cccccccCCc--------------------------
Confidence 888888775 44333332222221111000000 0000000000
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Q 000107 1142 NMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGW-YDLEGLIAKFQN 1220 (2191)
Q Consensus 1142 ~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~-~~~~~ll~~~~~ 1220 (2191)
.. ...+...+.||++|++|++|++|+|+..|.++|++++||+|+++++|.|++++++.||+.||| ..+...|..+++
T Consensus 557 -~~-~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~ 634 (720)
T PRK00254 557 -WE-DYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHL 634 (720)
T ss_pred -ch-hhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 00 012234467999999999999999999999999999999999999999999999999999997 466678889999
Q ss_pred HHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1221 RVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1221 RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
||.|||+.|+++|++|||||+.|||+||++||+|+.||+.|++++|.++ .+++.++|++|++..+
T Consensus 635 rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~------------~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 635 RVKHGVREELLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKV------------EGIGAKIVEGIFKHLG 699 (720)
T ss_pred HHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcC------------CCCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999887 4677889999988643
|
|
| >cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-82 Score=780.24 Aligned_cols=373 Identities=49% Similarity=0.759 Sum_probs=340.9
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhhcC
Q 000107 1753 GIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEH 1832 (2191)
Q Consensus 1753 Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~~h 1832 (2191)
||.||.+.|+++...++.++++||+++++ ||++++|+.|...|
T Consensus 1 Gi~~d~~~l~~~~~~l~~~~~~le~~~~~-------------------------------------st~~~~L~~l~~~~ 43 (373)
T cd08638 1 GIGFDPEELERQRALLQAKLKELEEEAYR-------------------------------------STSKEVLEQLKRLH 43 (373)
T ss_pred CeEeCHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------------cchHHHHHHHHhcC
Confidence 89999999999999999999999999987 79999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCc
Q 000107 1833 PIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNA 1912 (2191)
Q Consensus 1833 pi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~ 1912 (2191)
|++.+|+|||++.|+++||++.+..++.+...+.+||||++|+|+||+||||||++|||||||+..++.... +.....
T Consensus 44 p~~~~ile~r~l~Kl~sty~~~~~~~~~~~~~~~~grih~~~~~~gt~TGRlSs~~PNlQniP~~~~~~~~~--~~~~~~ 121 (373)
T cd08638 44 PLPKLILEYRKLSKLLTTYVEPLLLLCKLSSSLQMYRIHPTWNQTGTATGRLSSSEPNLQNVPKDFEIKDAP--SPPAGS 121 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEeeEEEEccceeeeeeeccCCcCCCCCCCcccccc--cccccc
Confidence 999999999999999999999998876532235689999999999999999999999999999864432110 000001
Q ss_pred ccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccc
Q 000107 1913 EVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTK 1992 (2191)
Q Consensus 1913 ~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK 1992 (2191)
..+.....+|++|+|+ +||+||++||||||||||||||+|+.|+++|++ |.|+|+.+|+.|||+|+++|++++|+.||
T Consensus 122 ~~~~~~~~iR~~f~a~-~G~~lv~~DysqiElRvlA~ls~D~~l~~~~~~-g~Dih~~~A~~~~g~~~~~v~~~~R~~aK 199 (373)
T cd08638 122 EGDIPTISLRHAFIPP-PGRVLLSADYSQLELRILAHLSGDPALIELLNS-GGDVFKMIAAQWLGKPVEEVTDEERQQAK 199 (373)
T ss_pred ccchhhhhhhheeeCC-CCCEEEEechhhhHHHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhCCHHHHHHHh
Confidence 1223345899999997 899999999999999999999999999999998 89999999999999999999999999999
Q ss_pred hhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhh
Q 000107 1993 RLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSK 2072 (2191)
Q Consensus 1993 ~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~ 2072 (2191)
++|||++||||+++||+++|+|.+||++++++||++||+|++|++++++.|+++|||+|++||||++|++++.++..++.
T Consensus 200 ~~~fg~~YG~g~~~La~~l~~s~~eA~~~i~~f~~~~p~v~~~~~~~~~~a~~~g~v~T~~GRrr~~p~~~~~~~~~~~~ 279 (373)
T cd08638 200 QLVYGILYGMGAKSLAEQLGVSEEEAKQFIESFKNAYPGVRRFIRETIERARRNGFVETLTGRRRYLPEINSGNSSERAQ 279 (373)
T ss_pred HHHHhhHhCCcHHHHHHHhCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcCcEEccCCCEEeCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHHHHH
Q 000107 2073 AQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKC 2152 (2191)
Q Consensus 2073 aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~ 2152 (2191)
++|+|+|++||||||||+|.||+++++.+...... ....+++|++||||||+||||++.+++++++|+++
T Consensus 280 ~~r~a~N~~iQGsaAdi~K~ami~i~~~l~~~~~~----------~~~~~~~lvl~VHDEl~~ev~~~~~~~~~~~i~~~ 349 (373)
T cd08638 280 AERQAVNTVIQGSAADIMKIAMINIHEKLHSLLPN----------LPAGRARLVLQIHDELLFEVPESDVDEVARIIKRS 349 (373)
T ss_pred HHHHHhchhhhhHHHHHHHHHHHHHHHHHHhhccc----------ccCCCeEEEEEEccEEEEEeCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763110 11467899999999999999999999999999999
Q ss_pred HhcccCcccceEEEeeccCCcccc
Q 000107 2153 MESAALLLVPLLVKIQVGSTWGSL 2176 (2191)
Q Consensus 2153 Me~a~~l~VPL~v~~~iG~sW~~~ 2176 (2191)
||++..+.|||+|++++|+|||++
T Consensus 350 Me~~~~l~VPl~v~~~iG~~w~~l 373 (373)
T cd08638 350 MENAAKLSVPLPVKVSIGKSWGSL 373 (373)
T ss_pred HhCccCCCCceEEeecccCCcccC
Confidence 999999999999999999999986
|
DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis (TLS) and in somatic hypermutation (SHM). DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Pol theta is an exception among family A polymerases and generates processive single base substitutions. Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondri |
| >cd08643 DNA_pol_A_pol_I_B Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-81 Score=776.89 Aligned_cols=366 Identities=21% Similarity=0.287 Sum_probs=332.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------------CcCCCCCHHHHHHHHHHh
Q 000107 1756 VDMEGCLQARNLLQKKLRYLEKKAYTLAG---------------------------------MKFSLYTAADIANVLYGH 1802 (2191)
Q Consensus 1756 vD~~~l~~~~~~l~~~l~~le~~i~~l~G---------------------------------~~fnl~S~~ql~~vLf~~ 1802 (2191)
+|.+....+..++..++.+|+.++.+.++ .+||++||+||+++||++
T Consensus 1 ~d~~~a~~l~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fN~~S~~ql~~~L~~~ 80 (429)
T cd08643 1 FNQEKAAKLYAQLAGRREDLENELQEVFPPWYVSDGFVPKKRTTNNSVRGYVKGAPYTKIKLVTFNPSSRKHIAKRLKAK 80 (429)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccccCCcccceecCCCccccCCccCCCCCHHHHHHHHHHh
Confidence 68899999999999999999999977652 269999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeecccccccccccc
Q 000107 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATG 1882 (2191)
Q Consensus 1803 l~lp~~~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTG 1882 (2191)
+|||+.+. +.++++|||+++|++|. ||++.+|++||+++|+++||+++...|.+. .+.+|||||+|+|+||+||
T Consensus 81 lg~~~~~~--t~~G~~std~~vL~~l~--~p~~~~ileyr~l~K~~st~~~~~~~~l~~--v~~dgRIH~~~nq~gt~TG 154 (429)
T cd08643 81 YGWEPQEF--TESGEPKVDEDVLSKLD--YPEAKLLAEYLLVQKRLGQLADGNNAWLKL--VHEDGRIHGAVNTNGAVTG 154 (429)
T ss_pred cCCCCCCc--CCCCCCCcCHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhhHHHHHHH--cCCCCceeeeEEeCCcccc
Confidence 99986543 33456899999999996 999999999999999999999987767664 3457999999999999999
Q ss_pred ccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCC---hHHHHH
Q 000107 1883 RLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKD---PALIGL 1959 (2191)
Q Consensus 1883 RlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D---~~Li~a 1959 (2191)
||||++|||||||+ ++++.|+ .||++|+|+ +||+||+|||||||||||||||+| +.|++
T Consensus 155 RlSss~PNLQnIP~-----~~~~~G~-----------~iR~~Fva~-~G~~lv~aDySQiELRiLAhls~d~~~~~l~~- 216 (429)
T cd08643 155 RATHFSPNMAQVPA-----VGSPYGK-----------ECRELFGVP-PGWSLVGADASGLELRCLAHYLARYDGGAYTR- 216 (429)
T ss_pred ccccCCCcccCCCC-----CCcccch-----------hhhheEecC-CCCEEEEecHHHHHHHHHHHHhcccchHHHHh-
Confidence 99999999999996 4556666 799999996 999999999999999999999998 78888
Q ss_pred hcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHH-------------------
Q 000107 1960 LSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKE------------------- 2020 (2191)
Q Consensus 1960 f~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~------------------- 2020 (2191)
|.. |.|+|+.+|+. +|+ ++|+.||++|||++||||+++||+.+|++.+||++
T Consensus 217 ~~~-~~DiH~~ta~~-~g~-------~~R~~AK~i~fGiiYG~g~~~La~~lg~~~~eA~~~~~~~~~~~~~~~~~~~~~ 287 (429)
T cd08643 217 KVL-GGDIHWANAQA-MGL-------LSRDGAKTFIYAFLYGAGDEKLGQIVGDDLRTAKNLNAEWPQTKKGTIKKIADK 287 (429)
T ss_pred hhc-ccchhHHHHHH-hCh-------HHHhhhHHHHHHHHHCCChhHHHHHhCCCHHHHHhhhhcccccccchhhhhhhh
Confidence 655 89999999987 564 78999999999999999999999999999999887
Q ss_pred -----HHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHH
Q 000107 2021 -----KIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMI 2095 (2191)
Q Consensus 2021 -----~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami 2095 (2191)
++++||++||+|++|++++++.|+++|||+|++||||++|. +|+|+|++||||||||+|.||+
T Consensus 288 ~~g~~~~~~f~~~~P~v~~~~~~~~~~a~~~Gyv~tl~GRrr~~~~------------~r~A~Nt~iQGsAADi~K~Ami 355 (429)
T cd08643 288 AKGRVVRANFLKGLPALGKLIKKVKEAAKKRGHLVGLDGRRIRVRS------------AHAALNTLLQSAGAILMKKWLV 355 (429)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHhCCceeCCCCCcccCch------------HHHHhChhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975 5899999999999999999999
Q ss_pred HHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHHHHHHhccc---CcccceEEEeeccCC
Q 000107 2096 NIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA---LLLVPLLVKIQVGST 2172 (2191)
Q Consensus 2096 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~---~l~VPL~v~~~iG~s 2172 (2191)
++++.|...+. .++.+++|||||||||+||||++++++++++|+++||+|. .|.|||.|++++|+|
T Consensus 356 ~i~~~l~~~g~-----------~~~~~~~lvlqVHDElv~ev~~~~ae~v~~~v~~~Me~a~~~~~l~VPL~v~~~iG~n 424 (429)
T cd08643 356 LLDDELTAKGG-----------VWGGDFEYCAWVHDEVQIECRKGIAEEVGKIAVEAAEKAGEHFNFRCPLAGEFDIGRN 424 (429)
T ss_pred HHHHHHHhcCC-----------CcCCCeEEEEEEccceEEEeCHHHHHHHHHHHHHHHHHhhhccCCCcceEeecCccCC
Confidence 99999986421 1245789999999999999999999999999999999997 689999999999999
Q ss_pred ccccC
Q 000107 2173 WGSLE 2177 (2191)
Q Consensus 2173 W~~~~ 2177 (2191)
|+|+|
T Consensus 425 W~e~h 429 (429)
T cd08643 425 WAETH 429 (429)
T ss_pred HHHcC
Confidence 99987
|
Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5 |
| >cd08640 DNA_pol_A_plastid_like DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=733.25 Aligned_cols=306 Identities=33% Similarity=0.485 Sum_probs=288.4
Q ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCC
Q 000107 1831 EHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGG 1910 (2191)
Q Consensus 1831 ~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~ 1910 (2191)
-||++.+|++||+++|+++||+++++..+. +.+||||++|+|+ |+||||||++|||||||+. +..+.
T Consensus 41 ~~~~~~~il~~r~~~Kl~sty~~~l~~~~~----~~dgRih~~~~~~-t~TGRlSs~~PNLQNiP~~------~~~~~-- 107 (371)
T cd08640 41 ACEAIEALKEIKSISTLLSTFIIPLQELLN----DSTGRIHCSLNIN-TETGRLSSRNPNLQNQPAL------EKDRY-- 107 (371)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCeeeeEeec-cceeehhcCCCCCCCCCCC------Ccccc--
Confidence 489999999999999999999999988763 4579999999999 9999999999999999962 22232
Q ss_pred CcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCC------
Q 000107 1911 NAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVG------ 1984 (2191)
Q Consensus 1911 ~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt------ 1984 (2191)
.+|+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|+|+.||+.+||+++++|+
T Consensus 108 ---------~iR~~Fva~-~G~~lv~aDySQiElRvlA~lS~D~~Li~af~~-g~DiH~~tA~~if~~~~e~v~~~~~~~ 176 (371)
T cd08640 108 ---------KIRKAFIAS-PGNTLIVADYSQLELRLLAHMTRCKSMIEAFNA-GGDFHSRTASGMYPHVAEAVANGEVLL 176 (371)
T ss_pred ---------chhheEecC-CCCEEEEechhhhhHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHhCCCHHHhccccccc
Confidence 699999997 999999999999999999999999999999998 899999999999999988665
Q ss_pred -----------------hhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcC
Q 000107 1985 -----------------SQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKG 2047 (2191)
Q Consensus 1985 -----------------~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~G 2047 (2191)
+++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++++++.|+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~R~~AK~infGi~YG~g~~~La~~lgis~~eA~~~i~~f~~~fP~v~~~~~~~~~~a~~~G 256 (371)
T cd08640 177 EWKSEGKPPAPLLKDKFKSERRKAKVLNFSIAYGKTAHGLAKDWKVKLKEAERTVDAWYSDRPEVEQWQKKTKKEARERG 256 (371)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHhccchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEE
Q 000107 2048 YVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127 (2191)
Q Consensus 2048 yV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvl 2127 (2191)
||+|++||||++|++++.+...++.++|+|+|++||||||||+|.||+++++.+... +.+++|||
T Consensus 257 yv~T~~GRrr~lp~i~s~~~~~~~~~eR~avN~~IQGsAADI~K~Ami~i~~~l~~~---------------~~~~~lvl 321 (371)
T cd08640 257 YTRTLLGRYRYLPDIKSRNRKKRGHAERAAINTPIQGSAADIAMKAMLRIYRNLRLK---------------RLGWKLLL 321 (371)
T ss_pred cEEccCCCEEECCCcccccHhhhhhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhc---------------cCCceEEE
Confidence 999999999999999999999999999999999999999999999999999998542 45789999
Q ss_pred EecceeeeeeChhhHHHHHHHHHHHHhccc--CcccceEEEeeccCCccc
Q 000107 2128 QVHDELVLEVDPSVIKEAVSLVQKCMESAA--LLLVPLLVKIQVGSTWGS 2175 (2191)
Q Consensus 2128 qVHDELv~Evp~~~~~~v~~~vk~~Me~a~--~l~VPL~v~~~iG~sW~~ 2175 (2191)
||||||+||||++.+++++++|+++|+++. .+.|||.|++++|+||++
T Consensus 322 qVHDElv~evp~~~~~~~~~~v~~~Me~~~~~~l~VPl~v~~~iG~~W~~ 371 (371)
T cd08640 322 QIHDEVILEGPEEKADEALKIVKDCMENPFFGPLDVPLEVDGSVGYNWYE 371 (371)
T ss_pred EEcceeEEEcCHHHHHHHHHHHHHHHHhcCccCCCccEEEeccccCCCCC
Confidence 999999999999999999999999999998 789999999999999986
|
DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including |
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=759.56 Aligned_cols=696 Identities=29% Similarity=0.385 Sum_probs=548.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
+++.+.+.++..|+.++++.|++++.. ++.+++|+|+|+|||||||++|+++|++.+.+.+.++|||+|+++||.|+++
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~-~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEK-GLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhc-cccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 678899999999999999999999984 5777999999999999999999999999999888999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+|+ .+..+|++|...+|+..... ...+++|+|+|||||++++++ ...++.++++|||||+|+++|..||+.+|.++
T Consensus 95 ~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~--~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 95 EFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRK--RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred Hhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhc--CcchhhcccEEEEeeeeecCCcccCceehhHH
Confidence 999 67889999999999986432 345789999999999999998 44489999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
++++... ..+|||++|||+||+.++++||++..+...|||+|+...+.....++...
T Consensus 172 ~r~~~~~-----------------------~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~ 228 (766)
T COG1204 172 ARMRRLN-----------------------ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGAD 228 (766)
T ss_pred HHHHhhC-----------------------cceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEec
Confidence 9998763 45899999999999999999999999988999999876555443333322
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
.... .......+.+..++.+.++.++++||||+||+.+..+|+.+...+....... +..........+
T Consensus 229 ~~~k-------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~-----~~~~~~~~a~~~ 296 (766)
T COG1204 229 GKKK-------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDD-----EKIVLDEGASPI 296 (766)
T ss_pred Cccc-------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChh-----hhhhcccccccc
Confidence 1110 0112234567788889999999999999999999999999987554321110 000000011111
Q ss_pred --hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC-----CCCCc
Q 000107 828 --RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP-----RIGRD 900 (2191)
Q Consensus 828 --~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p-----~~g~~ 900 (2191)
...+...+..|.+++..|++|||+||+.++|..||+.|+.|.++|||||+||++|||+|+.+|||... ..|..
T Consensus 297 ~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~ 376 (766)
T COG1204 297 LIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIV 376 (766)
T ss_pred ccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeE
Confidence 23344457899999999999999999999999999999999999999999999999999999998742 33456
Q ss_pred ccCcccccccccccCCCCCCCceEEEEEeCh-hhHHH-HHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHH
Q 000107 901 FIDGTRYRQMAGRAGRTGIDTKGESMLICKP-EEVKK-IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978 (2191)
Q Consensus 901 ~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~-~e~~~-~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di 978 (2191)
.+++.+|+||+|||||+|+|..|+++++++. ++... ...+++..++++.|.|..+. +....++.+++.+.+.+..++
T Consensus 377 ~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~-~~~~~l~~v~~~~~~v~~~~~ 455 (766)
T COG1204 377 DIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDEL-NLRTFLLGVISVGDAVSWLEL 455 (766)
T ss_pred ECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccc-cchheEEEEEeccchhhHHHH
Confidence 7899999999999999999999999999954 33333 34567777778888888766 455556777788888888888
Q ss_pred HHHHHhhhcCCCCcch-hHHHHHHHHHHHHHHcc-cceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhccccc
Q 000107 979 HRYVRCTLLNSTKPFQ-DVVKSAQDSLRWLCHRK-FLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFV 1056 (2191)
Q Consensus 979 ~~~l~~tll~~~~~~~-~~~~~~~~al~~L~~~~-~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~v 1056 (2191)
..|+..||.+++.... .....+..++.+|.+++ ++. .....+.+|.+|+.++..+++|.+++.+.+.+......
T Consensus 456 ~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~--~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~-- 531 (766)
T COG1204 456 TDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILD--ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALE-- 531 (766)
T ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceee--ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccc--
Confidence 8999999998874333 23455678999999987 443 22335899999999999999999999999999876531
Q ss_pred ccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhh
Q 000107 1057 LASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRL 1136 (2191)
Q Consensus 1057 l~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1136 (2191)
.+++.++|+++-. ||+...+.+......... ............ .+
T Consensus 532 -~~~~~~l~~is~~-----pd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~-------------- 576 (766)
T COG1204 532 -PTEIGLLYLISLT-----PDLMPIKLRERESSELVL-------------DELEEQSDYLLG--ER-------------- 576 (766)
T ss_pred -cchHHHhhhhhcC-----ccchhhhhhhhhhhhhhH-------------HHHHhcchHHhh--cc--------------
Confidence 3778888887764 776555444333222100 000000000000 00
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHH-------HHHHHHHHHHhCch
Q 000107 1137 GITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRF-------ASMVSVFCERLGWY 1209 (2191)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~-------a~~v~~fc~~lg~~ 1209 (2191)
.... ..+.-....+++++.+|.+||+|.+...|+++|++.+|+++...+.|.|+ ++++.+.+..++-.
T Consensus 577 ----~~~~-~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r~~~~~~~~ 651 (766)
T COG1204 577 ----LDEL-AVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAERLAKILGLG 651 (766)
T ss_pred ----cccc-chhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhhhHhhhCCC
Confidence 0000 00111234688899999999999999999999999999999999999999 99999999999953
Q ss_pred hHH-HHHHHHHHHHhccCc-hhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHH-cCCHHHHHHHHhhcchhHHHHHhhhhH
Q 000107 1210 DLE-GLIAKFQNRVSFGVR-AEIVELTTIPYVKGSRARALYKAGLRTPLAIA-EASISEIVKALFESSSWIAEAQRRVQL 1286 (2191)
Q Consensus 1210 ~~~-~ll~~~~~RL~~Gv~-~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la-~a~~~~l~~~l~~~~~~~~~~~~~~~~ 1286 (2191)
... ..+..+..|+.+||+ +|+++|+.++++++.|||+||++||+++++++ .+.+.++... .+++.
T Consensus 652 ~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g~~~~~~~~~~~~~~~~~~~------------~~~~~ 719 (766)
T COG1204 652 LHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPL------------TGIGE 719 (766)
T ss_pred ccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhhhccHHHHHhhcChhhhhhh------------hhhHH
Confidence 322 789999999999999 99999999999999999999999999999999 7777777665 34556
Q ss_pred HHHHHHHHHHHHHH
Q 000107 1287 GVAKKIKNGARKIV 1300 (2191)
Q Consensus 1287 ~~A~~I~~~A~~l~ 1300 (2191)
+.+..|..+.....
T Consensus 720 ~~~~~i~~~~~~~~ 733 (766)
T COG1204 720 RLVEAILESLGRDV 733 (766)
T ss_pred HHHHHHHHHhhhhh
Confidence 77777877766654
|
|
| >cd08642 DNA_pol_A_pol_I_A Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-74 Score=696.43 Aligned_cols=349 Identities=18% Similarity=0.182 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHH
Q 000107 1762 LQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEH 1841 (2191)
Q Consensus 1762 ~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~ 1841 (2191)
........+..++|+++||+++|.+ |++||+||+++||+++++|.+.. ++ | .+|+.|.+.||+++.||+|
T Consensus 3 ~~a~~~~~~~k~~l~~~i~~~~g~~-n~~SpkQL~~~Lf~~~~l~~~~~-k~------t--tvl~~l~~~~~~~~~iL~~ 72 (378)
T cd08642 3 NAAIACDDQYKEELLEEAKELTGLD-NPNSPAQLKDWLNEQGGEVDSLL-KK------D--VVALLLKTAPGDVKRVLEL 72 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHcCCCCCCCc-hh------H--HHHHHhcccCcHHHHHHHH
Confidence 3445667788899999999999998 99999999999999999974321 11 1 1899999999999999999
Q ss_pred HHHHHHHH-hHHHHHHHHhhhhcCCCceeecccccccc-ccccccccCCCCccccccccccccccccc----cCCC----
Q 000107 1842 RTLAKLLN-CTLGSICSLARISMSTQKYTLHGHWLQTS-TATGRLSMEEPNLQCVEHMVEFKMSNEDI----YGGN---- 1911 (2191)
Q Consensus 1842 R~l~Klls-ty~~~l~~~~~~~~~~~~grih~~~~q~g-TaTGRlSss~PNLQNiPk~~~~~~~~~~g----~~~~---- 1911 (2191)
|++.|+.+ ||++.|+..+ +.+||||++|+|+| |+||||||++|||||||+...-.+ +.+ +.++
T Consensus 73 R~~~k~~s~t~~~~l~~~~-----~~~gRih~~~~~~gat~TGRlss~~pnlQNiP~~~~~~~--~~~~~~~~~~d~~~~ 145 (378)
T cd08642 73 RQELSKTSVKKYEAMERAV-----CSDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNYLKDL--DLARELVKSGDFDAL 145 (378)
T ss_pred HHHHhhccHHHHHHHHHHc-----CCCCceeeeeeeecchhccccccCCCCcccCCCCcccch--HHHHHHhhccchhhh
Confidence 99999998 9999998765 35699999999999 999999999999999997310000 000 0000
Q ss_pred -----cccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCC--CCC
Q 000107 1912 -----AEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED--SVG 1984 (2191)
Q Consensus 1912 -----~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e--~Vt 1984 (2191)
...+.....||+||+|+ +||+|++|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|++ +|+
T Consensus 146 ~~~~~~~~~~~~~~iR~aFva~-~G~~lvsaDySQIElRVLAhlS~D~~li~af~~-g~Dih~~tAs~if~vp~e~~~v~ 223 (378)
T cd08642 146 ELLYGSVPDVLSQLIRTAFIPS-EGHRFIVSDFSAIEARVIAWLAGEQWRLDVFAT-HGKIYEASASQMFGVPVEKIGKN 223 (378)
T ss_pred hhhccccccHHHHHhHHheecC-CCCEEEEecHHHHHHHHHHHHhCCHHHHHHHhc-CCChHHHHHHHHhCCChhhcccC
Confidence 00111223799999997 999999999999999999999999999999998 899999999999999998 799
Q ss_pred hhhhcccchhhhhhhcCCChhhh----hhhcCCCHHHHHHHHHHHHHhChhHHHHHHHH---HHHHHhcCeEEcccCCee
Q 000107 1985 SQERDQTKRLIYGILYGMGPNTL----SEQLNCSSNEAKEKIKSFKSSFPGVASWLHVA---VSSCHQKGYVESLKGRKR 2057 (2191)
Q Consensus 1985 ~~~R~~AK~i~fGiiYGmG~~~L----a~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~---~~~a~~~GyV~Tl~GRrr 2057 (2191)
+++|++||++|||++||||+++| ++++|+|.+||+.++++||++||+|++|++++ ++.|+++|||.|+
T Consensus 224 ~~~R~~AK~vnfGiiYG~g~~~L~~~aa~~lgis~~EA~~~i~~yf~~yP~v~~~~~~~~~~~~~a~~~g~v~t~----- 298 (378)
T cd08642 224 SHLRQKGKVAELALGYGGSVGALKAMGALEMGLTEDELPGIVDAWRNANPNIVKLWWDVDKAAKKAVKERKTVKL----- 298 (378)
T ss_pred HHHHHHhhhhhccceeccchHHHHHhhhhhcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHcCceEee-----
Confidence 99999999999999999999999 89999999999999999999999999999987 7788899999998
Q ss_pred ecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeee
Q 000107 2058 FLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEV 2137 (2191)
Q Consensus 2058 ~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Ev 2137 (2191)
+ ++++|+|||||||||+|.||+++++. +++|||||||||||||
T Consensus 299 ---------------g-~r~~~n~IQGtAADi~k~Ami~l~~~---------------------g~~ivLqVHDElv~Ev 341 (378)
T cd08642 299 ---------------G-GKLVENIVQAIARDCLAEAMLRLEKA---------------------GYDIVMHVHDEVVIEV 341 (378)
T ss_pred ---------------h-HhhhhcccchhHHHHHHHHHHHHHhc---------------------CCeEEEEECceeEEee
Confidence 1 33566699999999999999999842 3689999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcccCc--ccceEEEeeccCCc
Q 000107 2138 DPSVIKEAVSLVQKCMESAALL--LVPLLVKIQVGSTW 2173 (2191)
Q Consensus 2138 p~~~~~~v~~~vk~~Me~a~~l--~VPL~v~~~iG~sW 2173 (2191)
|+ .++.++.|+++|++++.| .|||.++..++..|
T Consensus 342 p~--~~~~~~~v~~iM~~~p~wa~~lPl~a~g~~~~~y 377 (378)
T cd08642 342 PE--GEGSLEEVNEIMAQPPPWAPGLPLNADGFESPYY 377 (378)
T ss_pred cc--chhHHHHHHHHHccCCccccCCcccccccccccc
Confidence 98 345788999999999998 69999999998877
|
Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. P |
| >cd08639 DNA_pol_A_Aquificae_like Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-72 Score=676.30 Aligned_cols=315 Identities=30% Similarity=0.439 Sum_probs=291.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhhcCCcH
Q 000107 1756 VDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIV 1835 (2191)
Q Consensus 1756 vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~~hpi~ 1835 (2191)
+|.++|..+..+++.++..|+.++|. ..||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~p~~ 32 (324)
T cd08639 1 LDLERWKELEKELERERQEAAKELYI------------------------------------------------EEHPAV 32 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhh------------------------------------------------cCChHH
Confidence 68899999999999888888777662 259999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccc
Q 000107 1836 PVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVD 1915 (2191)
Q Consensus 1836 ~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~ 1915 (2191)
.+|+|||++.|+++||++++...+. ..+|||||+|+|++|+|||||+++|||||||++ .
T Consensus 33 ~~lle~r~~~kl~~t~~~~l~~~~~----~~~grih~~~~~~gt~TGRlS~~~PnlQniP~~----------~------- 91 (324)
T cd08639 33 RLLLEYRKLNKLISTFGEKLPKHIH----PVTGRIHPSFNQIGAASGRMSCSNPNLQQIPRE----------R------- 91 (324)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcc----CCCCceeeeEEecccceeehhhccCccccCCCC----------c-------
Confidence 9999999999999999999876653 457999999999999999999999999999962 1
Q ss_pred cccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhh
Q 000107 1916 HCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLI 1995 (2191)
Q Consensus 1916 ~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~ 1995 (2191)
.+|++|+|+ +||+|+++||||||+|||||||+|+.|+++|++ |.|+|+.+|+.|||+|+++|++++|+.||++|
T Consensus 92 ----~iR~~f~a~-~G~~lv~aDysqiElRilA~ls~D~~l~~~~~~-g~Dih~~~A~~~~g~~~~~v~~~~R~~aK~~~ 165 (324)
T cd08639 92 ----EFRRCFVAP-EGNKLIIADYSQIELRIAAEISGDERMISAYQK-GEDLHRLTASLITGKPIEEITKEERQLAKAVN 165 (324)
T ss_pred ----ccceeEEcC-CCCEEEEechhhhHHHHHHHHhCCHHHHHHHhc-CCCHhHHHHHHHhCCChhhCCHHHHHHhhhHH
Confidence 599999997 999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred hhhhcCCChhhhhhhcC------CCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhh
Q 000107 1996 YGILYGMGPNTLSEQLN------CSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKE 2069 (2191)
Q Consensus 1996 fGiiYGmG~~~La~~l~------is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~ 2069 (2191)
||++||||+++|+++++ ++.+||++++++||..||+|.+|++++. +++.|||+|++||||+++
T Consensus 166 fg~~YG~g~~~L~~~l~~~~g~~~s~~eA~~~~~~f~~~~p~v~~~~~~~~--a~~~g~v~Tl~GRrr~~~--------- 234 (324)
T cd08639 166 FGLIYGMSAKGLREYARTNYGVEMSLEEAEKFRESFFFFYKGILRWHHRLK--AKGPIEVRTLLGRRRVFE--------- 234 (324)
T ss_pred HHHHhCCchHHHHHHHhhhcCcCCCHHHHHHHHHHHHHhChhHHHHHHHHH--HhhcCeEECCCCCeeccc---------
Confidence 99999999999999764 9999999999999999999999999865 678899999999999984
Q ss_pred hhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHHHH
Q 000107 2070 KSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLV 2149 (2191)
Q Consensus 2070 r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~~v 2149 (2191)
..++|+|+|++||||||||+|.||+++++++.. .+++|++||||||+||||++.+++++++|
T Consensus 235 -~~~~r~avN~~IQGsaADi~K~ami~i~~~l~~-----------------~~~~lvl~VHDElv~ev~~~~~~~~~~~i 296 (324)
T cd08639 235 -YFTFTEALNYPIQGTGADILKLALALLVDRLKD-----------------LDAKIVLCVHDEIVLEVPEDEAEEAKKIL 296 (324)
T ss_pred -chhhhhHhhhhhhhHHHHHHHHHHHHHHHHHhc-----------------CCCeEEeeeceeeeeecCHHHHHHHHHHH
Confidence 357899999999999999999999999998764 26799999999999999999999999999
Q ss_pred HHHHhcccC---cccceEEEeeccCCcc
Q 000107 2150 QKCMESAAL---LLVPLLVKIQVGSTWG 2174 (2191)
Q Consensus 2150 k~~Me~a~~---l~VPL~v~~~iG~sW~ 2174 (2191)
+++||++.. +.|||.|+++||+||+
T Consensus 297 ~~~Me~a~~~~~~~VPl~v~~~iG~sW~ 324 (324)
T cd08639 297 ESSMEEAGKRILKKVPVEVEVSISDSWA 324 (324)
T ss_pred HHHHHHHHHhcCCCCCeEEecccCCCCC
Confidence 999999985 4899999999999997
|
Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nucleas |
| >cd06444 DNA_pol_A Family A polymerase primarily fills DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=679.83 Aligned_cols=301 Identities=29% Similarity=0.429 Sum_probs=285.2
Q ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCC
Q 000107 1832 HPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGN 1911 (2191)
Q Consensus 1832 hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~ 1911 (2191)
||++.+|+|||++.|+++||++.+...+. .+||||++|+|++|+|||||+++|||||||+. +..|+
T Consensus 26 hp~~~~ile~r~~~Kl~st~~~~~~~~~~-----~~gRih~~~~~~gT~TGRlSs~~PNlQniP~~------~~~g~--- 91 (347)
T cd06444 26 HPAVPLLLEYKKLAKLWSANGWPWLDQWV-----RDGRFHPEYVPGGTVTGRWASRGGNAQQIPRR------DPLGR--- 91 (347)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCccccEEEEcccceeeeccCCCccccCCCC------Cchhh---
Confidence 99999999999999999999999876553 47999999999999999999999999999963 22344
Q ss_pred cccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhccc
Q 000107 1912 AEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQT 1991 (2191)
Q Consensus 1912 ~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~A 1991 (2191)
.+|++|+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|+|+.+|+.||++| |++++|+.|
T Consensus 92 --------~iR~~f~a~-~G~~lv~aDysqiElRilA~ls~D~~l~~~f~~-g~Dih~~~A~~~~~~~---v~~~~R~~A 158 (347)
T cd06444 92 --------DIRQAFVAD-PGWTLVVADASQLELRVLAALSGDEALAEAFGR-GGDLYTATASAMFGVP---VGGGERQHA 158 (347)
T ss_pred --------hhhheEecC-CCCEEEEechhHHHHHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHhCCC---CCHHHHHHH
Confidence 799999997 999999999999999999999999999999998 8999999999999998 899999999
Q ss_pred chhhhhhhcC----CChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhc---CeEEcccCCeeecCcccC
Q 000107 1992 KRLIYGILYG----MGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQK---GYVESLKGRKRFLSKIKF 2064 (2191)
Q Consensus 1992 K~i~fGiiYG----mG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~---GyV~Tl~GRrr~lp~i~s 2064 (2191)
|++|||++|| ||+++|++.++++.+||++++++||++||+|++|++.+++.|++. |||+|++||||++|++++
T Consensus 159 K~~~fg~~YG~~~~~g~~~L~~~~~is~~ea~~~~~~f~~~~p~v~~~~~~~~~~a~~~~~~g~v~T~~GR~r~~~~~~~ 238 (347)
T cd06444 159 KIANLGAMYGATSGISARLLAQLRRISTKEAAALIELFFSRFPAFPKAMEYVEDAARRGERGGYVRTLLGRRSPPPDIRW 238 (347)
T ss_pred HHHHHHHHhCCchhhhHHHHHHHhCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhccCCceEEEeCCcEeecCCCcc
Confidence 9999999999 999999999999999999999999999999999999999999998 999999999999999987
Q ss_pred -----------CChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEeccee
Q 000107 2065 -----------GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDEL 2133 (2191)
Q Consensus 2065 -----------~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDEL 2133 (2191)
.++..+..++|+|+|++||||||||+|.||+++++.+.+. +.+++||+||||||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~a~N~~IQGsaADi~K~ami~~~~~l~~~---------------~~~~~lvl~VHDEl 303 (347)
T cd06444 239 TEVVSDPAAASRARRVRRAAGRFARNFVVQGTAADWAKLAMVALRRRLEEL---------------ALDARLVFFVHDEV 303 (347)
T ss_pred cccccccccccccHHHHHHhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCcEEEEEEccce
Confidence 6778889999999999999999999999999999998764 45789999999999
Q ss_pred eeeeChhhHHHHHHHHHHHHhccc---CcccceEEEeeccCCcc
Q 000107 2134 VLEVDPSVIKEAVSLVQKCMESAA---LLLVPLLVKIQVGSTWG 2174 (2191)
Q Consensus 2134 v~Evp~~~~~~v~~~vk~~Me~a~---~l~VPL~v~~~iG~sW~ 2174 (2191)
+||||++.+++++.+|+++|+++. .+.|||.|++++|+||+
T Consensus 304 v~evp~~~~~~~~~~l~~~M~~~~~~~~~~vPl~v~~~ig~~W~ 347 (347)
T cd06444 304 VLHCPKEEAEAVAAIVREAAEQAVRLLFGSVPVRFPVKIGVVWR 347 (347)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeeecCCCC
Confidence 999999999999999999999998 58999999999999995
|
DNA polymerase family A, 5'-3' polymerase domain. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gamma, and several bacteriophage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic polymerase I (pol I) has two functional domains located on the same polypeptide; a 5'- |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=569.91 Aligned_cols=511 Identities=26% Similarity=0.356 Sum_probs=400.6
Q ss_pred cCCCCCCccCCCCCCCCCC---CcCCcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHH
Q 000107 482 VGNEKSDEAGTPSSSGMLK---DCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVA 558 (2191)
Q Consensus 482 i~~~~~~e~~~P~~~~~~~---e~l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlva 558 (2191)
+.+..+.++..|...+.+. ..+..+. ||.-... .-++|..++.+|.+|++. ++..+.|+|||||||||||-+|
T Consensus 68 ~~~~~~eE~~~P~s~~~~~~~~k~~~isd-ld~~~rk--~~f~f~~fN~iQS~vFp~-aY~SneNMLIcAPTGsGKT~la 143 (1230)
T KOG0952|consen 68 EDYKTYEEVKIPASVPMPMDGEKLLSISD-LDDVGRK--GFFSFEEFNRIQSEVFPV-AYKSNENMLICAPTGSGKTVLA 143 (1230)
T ss_pred cccCcceEEecCccCCCccccccceeEEe-cchhhhh--hcccHHHHHHHHHHhhhh-hhcCCCCEEEECCCCCCchHHH
Confidence 4455666777777766652 2233322 5544332 235788999999999995 5778999999999999999999
Q ss_pred HHHHHHHHHh---------cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHH
Q 000107 559 EILMLRRLIS---------TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKAN 628 (2191)
Q Consensus 559 el~iL~~ll~---------~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~ 628 (2191)
+|.||+.+.+ ++-|+|||+|.+|||.|+++.|.+.+..+|++|..++|+..... --.+++|+|+|||||+
T Consensus 144 ~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwD 223 (1230)
T KOG0952|consen 144 ELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWD 223 (1230)
T ss_pred HHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHHHHhcCEEEeccccee
Confidence 9999999875 56699999999999999999999999999999999999975322 1356899999999999
Q ss_pred HHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEec
Q 000107 629 SLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSA 707 (2191)
Q Consensus 629 ~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSA 707 (2191)
-+.|++.... .++.|++|||||+|+|.|. ||+.+|.|++|+.+.... ....+||||+||
T Consensus 224 vvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~ves-------------------sqs~IRivgLSA 283 (1230)
T KOG0952|consen 224 VVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVES-------------------SQSMIRIVGLSA 283 (1230)
T ss_pred eeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHh-------------------hhhheEEEEeec
Confidence 8888765444 4677999999999999986 999999999998765321 236799999999
Q ss_pred cCCCHHHHHHHhhcc------ccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCc
Q 000107 708 TMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHS 781 (2191)
Q Consensus 708 TL~N~~~la~wL~a~------l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~ 781 (2191)
|+||.+++|.||+.. .|...|||+|++..+..-... +.......+ ......-+.+.+.+|++
T Consensus 284 TlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~--~~~~~~~~~----------d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 284 TLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK--KNRQQKKNI----------DEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred cCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc--cchhhhhhH----------HHHHHHHHHHHHHcCCe
Confidence 999999999999974 457899999999776522111 111111011 11233445566788999
Q ss_pred EEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHH
Q 000107 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVV 861 (2191)
Q Consensus 782 vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~V 861 (2191)
++|||++|+.+.+.|+.|.+.....+...... +...+..|.++..+|+++||+||...+|..+
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~-----------------~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFL-----------------PSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccC-----------------CChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 99999999999999999988765543321110 1113567888999999999999999999999
Q ss_pred HHHhhcCCceEEEecccccccCCCCCceEEeecCCC------CCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 862 ETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI------GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 862 e~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~------g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
|..|..|.++|||||+|++||||||+.-|||..... +-..+...+.+|+.|||||+++|..|+++++++.+...
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 999999999999999999999999999999963321 11224455779999999999999999999999999999
Q ss_pred HHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCC---Ccch----------------hH
Q 000107 936 KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNST---KPFQ----------------DV 996 (2191)
Q Consensus 936 ~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~---~~~~----------------~~ 996 (2191)
.|..+|.+.- +++|.|.. .+.+.+...|+.|.+.+.+...+|+.|||++.. +|.. ..
T Consensus 495 ~Y~sLl~~~~-piES~~~~---~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~ 570 (1230)
T KOG0952|consen 495 HYESLLTGQN-PIESQLLP---CLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHR 570 (1230)
T ss_pred HHHHHHcCCC-hhHHHHHH---HHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHH
Confidence 9999998875 78888865 344556677889999999999999999999732 2211 11
Q ss_pred HHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 997 VKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 997 ~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
.+-+..+++.|....+|+.+..+.+|.+|.+||.++..||.-++...+.+..+
T Consensus 571 ~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k 623 (1230)
T KOG0952|consen 571 RELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPK 623 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhccc
Confidence 23456788888888999988888899999999999999999886665555443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-54 Score=512.03 Aligned_cols=590 Identities=24% Similarity=0.354 Sum_probs=436.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
+|+.+.+.++..|++.|.|+|.-|+.. ++++|+|++|.++|+||||++++++-+..++..|++.||++|.++||+|+++
T Consensus 201 ipe~fk~~lk~~G~~eLlPVQ~laVe~-GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~ 279 (830)
T COG1202 201 IPEKFKRMLKREGIEELLPVQVLAVEA-GLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYE 279 (830)
T ss_pred CcHHHHHHHHhcCcceecchhhhhhhh-ccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHH
Confidence 789999999999999999999999985 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCC--------CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchh
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGG--------GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~--------~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG 660 (2191)
+|++.+.++|++|..-.|-... .....+.||||+|+|-++.+++. ...+.+|+.|||||+|++.|..||
T Consensus 280 dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt---g~~lgdiGtVVIDEiHtL~deERG 356 (830)
T COG1202 280 DFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT---GKDLGDIGTVVIDEIHTLEDEERG 356 (830)
T ss_pred HHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc---CCcccccceEEeeeeeeccchhcc
Confidence 9999999999998877775421 12345789999999999999985 378999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEec
Q 000107 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 661 ~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~ 740 (2191)
+.++-++.+||+.. +..|+|++|||+.|++++++.|++.++..+.||||++.++.+.
T Consensus 357 ~RLdGLI~RLr~l~-----------------------~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~ 413 (830)
T COG1202 357 PRLDGLIGRLRYLF-----------------------PGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFA 413 (830)
T ss_pred cchhhHHHHHHHhC-----------------------CCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeee
Confidence 99999999999984 5689999999999999999999999999999999999887643
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh----c--CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ----E--GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~----~--g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
..-. .+.+.+..|+..... . .+++|||++||+.|..+|..|... +
T Consensus 414 ~~e~------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k----G------- 464 (830)
T COG1202 414 RNES------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK----G------- 464 (830)
T ss_pred cCch------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC----C-------
Confidence 2211 122334444443332 2 379999999999999999887431 1
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
..++++|+||+..+|+.||.+|.++.+.++|+|..|++|||+|+..||+.+
T Consensus 465 -----------------------------~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs 515 (830)
T COG1202 465 -----------------------------LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES 515 (830)
T ss_pred -----------------------------cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH
Confidence 127789999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChh----------hHHHHHhhhccCCCCcccccccccchhhHHHH
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE----------EVKKIMGLLNESCPPLHSCLSEDKNGMTHAIL 964 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~----------e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iL 964 (2191)
-.+|.+|+++.+|.||.|||||++++..|.+|+++.+. +-+...++|+..++|+.-...++.. ...+|
T Consensus 516 LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e--~e~vL 593 (830)
T COG1202 516 LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDE--EENVL 593 (830)
T ss_pred HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHH--HHHHH
Confidence 89999999999999999999999999999999998762 2344567999998888766654322 22234
Q ss_pred HHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHH
Q 000107 965 EVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIV 1044 (2191)
Q Consensus 965 eiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l 1044 (2191)
. ..|+..+..+|.+.-+.++-..-. ...+|..|.+.|||..+ ++.+.+|+.|++++.+-|.|..|..+
T Consensus 594 A--~~~v~~s~~~i~~v~~~~~g~~~~--------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~I 661 (830)
T COG1202 594 A--SAGVTNSLSVIERVNSLMLGAAFD--------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEFI 661 (830)
T ss_pred H--HhhhcCcHHHHhhcChhhccccCC--------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHHH
Confidence 3 456677888887765545443221 24578899999999643 44589999999999999999999999
Q ss_pred HHHHhhhcccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHH-----HHHHHhcCCCccccc
Q 000107 1045 LDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEP-----YLMRMAHGAPMRISS 1119 (2191)
Q Consensus 1045 ~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~-----~l~~~~~~~~~~~~~ 1119 (2191)
.+.+-..+. .+.+.-.+.|+....-+. .+- ..++.. + +..+.-. ++.-...+..+.
T Consensus 662 r~~v~~~~~------pl~i~~~l~pfE~ayls~--~l~---r~i~~~---~--~~~vpsr~f~~a~~~I~~e~d~ii--- 722 (830)
T COG1202 662 REGVLASMD------PLRIAAELEPFENAYLSG--FLK---RAIESA---L--RGRVPSRLFDSALLDILEEGDKII--- 722 (830)
T ss_pred HHhhhccCC------hHhHhhccccccccccCh--HHH---HHHHHH---h--cCCCchhhhhHHHHHHHhchhhhh---
Confidence 888644333 334333344542111111 010 011100 0 0111111 111111111000
Q ss_pred cccccccCccchhhhhh-cc---ccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH----HhCCC--cchHHHHH
Q 000107 1120 KLRDSTKGLHGKLEYRL-GI---TSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCE----TFKVA--RGMVQALQ 1189 (2191)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~----~y~v~--rG~lq~l~ 1189 (2191)
.+.+++...+ .+ ...+.-.| ......+...-+++.-=++.....+|.+ +|||. +|||-+-+
T Consensus 723 -------~ld~k~~e~l~~i~~df~~c~c~d--~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wL 793 (830)
T COG1202 723 -------ELDPKLKEKLLLIYMDFLNCTCRD--CCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWL 793 (830)
T ss_pred -------cCCHHHHHHHHHHHHHHhcCchhh--hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHH
Confidence 1111111100 00 00000000 0111112222344444456666666664 68865 89999999
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Q 000107 1190 ENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFG 1225 (2191)
Q Consensus 1190 ~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~G 1225 (2191)
+++-+..-++-+++...+-..++.....+.+.+.-|
T Consensus 794 d~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 794 DTLVRLLEAIGRIARVFKKREVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcC
Confidence 999999999999999988777777777777766544
|
|
| >cd08641 DNA_pol_gammaA Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=526.74 Aligned_cols=249 Identities=22% Similarity=0.243 Sum_probs=232.0
Q ss_pred CCceeeccccccccccccc------cccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEec
Q 000107 1865 TQKYTLHGHWLQTSTATGR------LSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAAD 1938 (2191)
Q Consensus 1865 ~~~grih~~~~q~gTaTGR------lSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaD 1938 (2191)
..+|||||.+.+.||+||| +|+++||.+++|+ .||++|+|+ |||+||+||
T Consensus 94 ~~~Gri~p~~~~~GtvTgRa~~~tW~tas~~~~~~iG~-----------------------eiR~aF~ap-~G~~lVgAD 149 (425)
T cd08641 94 PGYGAILPQVVPMGTITRRAVEPTWLTASNAKKNRVGS-----------------------ELKAMVQAP-PGYSFVGAD 149 (425)
T ss_pred CCCCeEeeeeecCcccccccccccccccCCCCcchhhH-----------------------HHHhheecC-CCCEEEEEc
Confidence 4579999999999999999 8889999999985 699999996 999999999
Q ss_pred cchhHHHHHHHhcCChHHH-----HHh---------cCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCC-
Q 000107 1939 YSQIELRLMAHFSKDPALI-----GLL---------SKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMG- 2003 (2191)
Q Consensus 1939 ySQIELRilAhlS~D~~Li-----~af---------~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG- 2003 (2191)
|||||||| ||+|+|+.|+ ++| .+ |.|||+.||+ +||++ |+.||++|||+|||||
T Consensus 150 ySQiELRi-A~lsgD~~l~~~~~~~AF~~~~l~g~k~~-g~DIH~~TA~-i~gis--------R~~AK~~NfG~IYG~g~ 218 (425)
T cd08641 150 VDSQELWI-ASVLGDAHFGGIHGATAIGWMTLQGKKSE-GTDLHSKTAS-ILGIS--------RDHAKVFNYGRIYGAGQ 218 (425)
T ss_pred hhHHHHHH-HHHcCCHhhhhccccchhhhhhhcccccC-CCCHHHHHHH-HhCCC--------HHHhHHHHHHHHHCCCc
Confidence 99999998 9999999999 899 66 8999999999 88974 9999999999999999
Q ss_pred --hhhhhhhcC--CCHHHHHHHHHHHHHhChhHHH-----------------------HHHHHHH-HHHhcCeEEcccCC
Q 000107 2004 --PNTLSEQLN--CSSNEAKEKIKSFKSSFPGVAS-----------------------WLHVAVS-SCHQKGYVESLKGR 2055 (2191)
Q Consensus 2004 --~~~La~~l~--is~~eA~~~i~~f~~~yp~v~~-----------------------~~~~~~~-~a~~~GyV~Tl~GR 2055 (2191)
+++|+++++ +|.+||++++++||++||||+. |++++++ .|+++||++|++||
T Consensus 219 ~~a~~L~~~l~~~is~~EA~~~i~~yF~~y~gVr~~~~~~~~~~~~~~~~~w~gg~es~m~n~le~~A~~~g~~tTllGr 298 (425)
T cd08641 219 PFAERLLMQFNPRLTPAEATEKAKQMYAATKGIRIAIQRSTKGKRLFKRPFWSGGSESIMFNKLEEIAAQSQPRTPVLGA 298 (425)
T ss_pred hhhHHHHHHhcCcCCHHHHHHHHHHHHHhCcChhhhhcccccccccccccccccchHHHHHHHHHHHHHhcCCCcCccCC
Confidence 899999999 9999999999999999999999 9999999 99999999999999
Q ss_pred eeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeee
Q 000107 2056 KRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVL 2135 (2191)
Q Consensus 2056 rr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~ 2135 (2191)
| ++|+|++.|...+.. +|.|+|+|||||||||+|+|||.++..|..+ +.+++|+|||||||+|
T Consensus 299 r-~~~~l~s~n~~~~~~-~rsaIN~pIQGSAADiiKlaMV~m~~~l~~~---------------~i~aRmlLqVHDEL~f 361 (425)
T cd08641 299 C-ITSALLEPNLVKNEF-MTSRINWVVQSSAVDYLHLMLVSMRWLIEKY---------------DIDARFCISIHDEVRY 361 (425)
T ss_pred E-echhhcccchhHHHH-HHHHhcccchhhHHHHHHHHHHHHHHHHHhc---------------CCCceEEEEECeEeee
Confidence 9 999999999988877 9999999999999999999999999999875 5688999999999999
Q ss_pred eeChhh------HHHHHHHHHHHHhcccCc---ccceEEE
Q 000107 2136 EVDPSV------IKEAVSLVQKCMESAALL---LVPLLVK 2166 (2191)
Q Consensus 2136 Evp~~~------~~~v~~~vk~~Me~a~~l---~VPL~v~ 2166 (2191)
|||+++ +.++..++.++|. |.++ .||-.|.
T Consensus 362 eV~eed~yr~alalqi~nlltram~-a~~lg~~dlPqs~a 400 (425)
T cd08641 362 LVKEEDKYRAALALQITNLLTRAMF-AQKLGINDLPQSVA 400 (425)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHH-HHHhccccCCcchh
Confidence 999998 6778888999999 7776 5777654
|
DNA polymerase gamma (Pol gamma), 5'-3' polymerase domain (Pol gammaA). Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gammaA, and several bacteriophage polymerases including those from odd-nu |
| >smart00482 POLAc DNA polymerase A domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-53 Score=483.91 Aligned_cols=204 Identities=43% Similarity=0.673 Sum_probs=197.9
Q ss_pred cccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhh
Q 000107 1920 NARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGIL 1999 (2191)
Q Consensus 1920 ~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGii 1999 (2191)
++|++|+|+ +||+||++||||||||||||||+|+.|+++|++ |.|+|+.+|+.|||+|+++|++++|+.||++|||++
T Consensus 3 ~iR~~f~a~-~G~~lv~~DysqiElRilA~ls~D~~l~~~~~~-g~D~h~~~A~~~~g~~~~~v~~~~R~~aK~~~~g~~ 80 (206)
T smart00482 3 EIRRAFVAP-PGYVLVSADYSQIELRILAHLSGDENLLEAFNN-GGDIHSKTAAQVFGVPEEEVTKELRRAAKAINFGII 80 (206)
T ss_pred hhhheeeCC-CCCEEEEeeHHHHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhCCHHHHHHHhHHHHHhh
Confidence 699999997 999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhhhhH
Q 000107 2000 YGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVN 2079 (2191)
Q Consensus 2000 YGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvN 2079 (2191)
||||+.+||+++|+|.+||++++++||++||+|++|++++.+.|+++|||+|++||||++|++++.+...++.++|+|+|
T Consensus 81 YG~g~~~la~~lg~s~~ea~~~~~~f~~~~p~v~~~~~~~~~~a~~~g~v~t~~Gr~r~~~~~~~~~~~~~~~~~r~a~N 160 (206)
T smart00482 81 YGMGAKGLAEQLGISEAEAKELIKAYFARFPGVKRYIKRTLEEARRKGYVTTLFGRRRYIPDIDSRNPVLRAAAERAAVN 160 (206)
T ss_pred hccchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHhCCEEEecCCCeeeCCCCCCCCHHHHhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChh
Q 000107 2080 SICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPS 2140 (2191)
Q Consensus 2080 t~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~ 2140 (2191)
++||||||||+|.||+++++.+... +.+++|++||||||+||||++
T Consensus 161 ~~iQgsaAdi~k~am~~~~~~~~~~---------------~~~~~~vl~vHDElv~evp~~ 206 (206)
T smart00482 161 APIQGSAADILKLAMIKMDEALKEK---------------GLRARLLLQVHDELVFEVPEE 206 (206)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCceEEEeeceeEEeecCCC
Confidence 9999999999999999999998864 447899999999999999974
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=510.38 Aligned_cols=654 Identities=25% Similarity=0.354 Sum_probs=458.5
Q ss_pred CCCccCCCCCCCCCCC---cCCcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHH
Q 000107 486 KSDEAGTPSSSGMLKD---CLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 486 ~~~e~~~P~~~~~~~e---~l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~i 562 (2191)
.+.++++|.....++. .+.--.-+|..-..+| .|...|+++|..+... ++....|+++|||||+|||.+|++-|
T Consensus 270 ~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF--~g~~sLNrIQS~v~da-Al~~~EnmLlCAPTGaGKTNVAvLti 346 (1674)
T KOG0951|consen 270 GYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAF--FGKQSLNRIQSKVYDA-ALRGDENMLLCAPTGAGKTNVAVLTI 346 (1674)
T ss_pred CceEEeCCCCCCCCCCccceeEeecCCcchhhhhc--ccchhhhHHHHHHHHH-HhcCcCcEEEeccCCCCchHHHHHHH
Confidence 4456677765533321 1111111454444454 4677899999999875 45567999999999999999999999
Q ss_pred HHHHHhc----------CCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHH
Q 000107 563 LRRLIST----------GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLV 631 (2191)
Q Consensus 563 L~~ll~~----------g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll 631 (2191)
|+.+... ..+++||+|.++|++++...|.+.+..+|++|..++|+...+. .-..++|+|||||+++-+.
T Consensus 347 Lqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiIT 426 (1674)
T KOG0951|consen 347 LQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIIT 426 (1674)
T ss_pred HHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhh
Confidence 9998652 2389999999999999999999999999999999999865332 2346899999999998877
Q ss_pred HHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 632 NRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 632 ~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
++--.....+-++++||||+|++.|. ||+.+|.+..+....... ....+++||+|||+||
T Consensus 427 Rk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses-------------------~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 427 RKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSES-------------------TEEGSRLVGLSATLPN 486 (1674)
T ss_pred cccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhh-------------------cccCceeeeecccCCc
Confidence 76333345567899999999999886 999999999998654321 1356899999999999
Q ss_pred HHHHHHHhhccc-----cccccccccceEEE-EeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEE
Q 000107 712 VAAVADWLQAAL-----YETNFRPVPLEEYI-KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIF 785 (2191)
Q Consensus 712 ~~~la~wL~a~l-----~~~~~RpvpL~e~i-~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF 785 (2191)
..+++.||+... |.+.|||+||...+ .+.......... .+ .+...+-+.+.. ..++||||
T Consensus 487 y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~q---am----------Ne~~yeKVm~~a-gk~qVLVF 552 (1674)
T KOG0951|consen 487 YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQ---AM----------NEACYEKVLEHA-GKNQVLVF 552 (1674)
T ss_pred hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHH---HH----------HHHHHHHHHHhC-CCCcEEEE
Confidence 999999998763 57899999998644 333221111111 11 111222222222 23799999
Q ss_pred eCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCC--CChhhhhhcCCcEEEEcCCCCHHHHHHHHH
Q 000107 786 CSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG--LDPVLEETLPSGVAYHHAGLTVEEREVVET 863 (2191)
Q Consensus 786 ~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g--ld~~L~~~l~~GVa~hHagLs~~eR~~Ve~ 863 (2191)
+.+|+++-++|+.|...+.....- ..+..-.+...++-++..+ .++.|++++++|++.||+||+..+|..+|+
T Consensus 553 VHsRkET~ktA~aIRd~~le~dtl-----s~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 553 VHSRKETAKTARAIRDKALEEDTL-----SRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred EEechHHHHHHHHHHHHHhhhhHH-----HHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 999999999999998644321110 1111111222233333333 588999999999999999999999999999
Q ss_pred HhhcCCceEEEecccccccCCCCCceEEeecCCC-----C-CcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 864 CYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-----G-RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 864 ~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~-----g-~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
.|+.|.++|+|+|.|+|||||+|+..|||..+.. | ...+++.+.+||.|||||+++|+.|+.+++....+..++
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 9999999999999999999999999999974322 1 234778899999999999999999999999999999999
Q ss_pred HhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCC---cch--------h-HH-----HHH
Q 000107 938 MGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTK---PFQ--------D-VV-----KSA 1000 (2191)
Q Consensus 938 ~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~---~~~--------~-~~-----~~~ 1000 (2191)
..++++++| ++|.+.. .+...+...|..| +++..|..+|+.+||++... |.. + .. ..+
T Consensus 708 ls~mn~qLp-iesq~~~---rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lv 782 (1674)
T KOG0951|consen 708 LSLMNQQLP-IESQFVS---RLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLV 782 (1674)
T ss_pred HHhhhhcCC-ChHHHHH---Hhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhH
Confidence 999999994 5666543 2344455556667 89999999999999986321 110 1 11 224
Q ss_pred HHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccceeeeeccCCCCCCCcHHH
Q 000107 1001 QDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWEL 1080 (2191)
Q Consensus 1001 ~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~ 1080 (2191)
..|.-.|.+.++|-.+...+.+.+|.+|+..+..++...+.....+.|+.... ++.+. .
T Consensus 783 hsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~------~i~lf---------------r 841 (1674)
T KOG0951|consen 783 HSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMS------EIDLF---------------R 841 (1674)
T ss_pred HHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhc------cchhh---------------h
Confidence 45677788889998777667789999999999999988776655555654432 22211 1
Q ss_pred HHHHHHhhhhhhhhhhcccCCCHHH---HHHHhcCCCccccccccccccCccchhhhhhccccCCCcchhHHHHHHHHHH
Q 000107 1081 YYERFLELSALDQSVGNQVGVSEPY---LMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFY 1157 (2191)
Q Consensus 1081 ~~~~~~~l~~~~~~v~~~~Gv~e~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy 1157 (2191)
|+.+- ++|. . +-+.+.- +..+....|+.. ...+ ++- --.
T Consensus 842 ifs~s---eEfk-~----~svr~~ek~el~~l~~~vpIpi---------------re~l---------~~p------~ak 883 (1674)
T KOG0951|consen 842 IFSKS---EEFK-Y----VSVREEEKMELAKLLERVPIPI---------------RENL---------DEP------SAK 883 (1674)
T ss_pred hhhhc---cccc-c----CCccHHHHHHhhhhcccCCcCc---------------hhcc---------ccc------hHH
Confidence 11111 1110 0 1111110 111111222211 0000 000 012
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCC
Q 000107 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIP 1237 (2191)
Q Consensus 1158 ~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip 1237 (2191)
++.+|+.-|+..-+.= |.+ +-+.-.+-|+|+++..++-.+|-+=||..++..+-.+-+.+..-.+++..||-+.+
T Consensus 884 invllq~yiS~lk~eG----~al-~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~plrqf~ 958 (1674)
T KOG0951|consen 884 INVLLQSYISQLKLEG----FAL-TSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTPLRQFK 958 (1674)
T ss_pred HHHHHHHHHhhccccc----cee-eeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCchhhcC
Confidence 6777777776643311 111 23344466899999999999998889999998888899999999999999999999
Q ss_pred CCCHHHHHHHHHc
Q 000107 1238 YVKGSRARALYKA 1250 (2191)
Q Consensus 1238 ~v~~~RAR~Ly~a 1250 (2191)
|+...--|.|=..
T Consensus 959 ~~~~ev~~~lE~k 971 (1674)
T KOG0951|consen 959 GCPKEVLRRLEKK 971 (1674)
T ss_pred CCCHHHHHHHHhc
Confidence 9887666655443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=433.45 Aligned_cols=341 Identities=23% Similarity=0.352 Sum_probs=277.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~r 580 (2191)
|++++..+++..||+.|+|+|.+.++. ++.|+++|..|.|||||||+|.+|++.++.. +++.+|+++|||
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~--~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPI--ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccce--eccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 778999999999999999999999987 9999999999999999999999999999885 267899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+...+.++...++++..++||+...+ .+..+.+|+|+||+++.+++.. ....|+++.++|+||+|.|.|
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhc
Confidence 9999999999999999999899999998653 3567899999999999999987 677899999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceE
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEE 735 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e 735 (2191)
.++.+.++.|+..+ +++..|.++.|||.|- +..++.-+-. .|+ +.
T Consensus 254 mGFe~qI~~Il~~i-------------------------~~~~rQtlm~saTwp~~v~~lA~~fl~-------~~~--~i 299 (519)
T KOG0331|consen 254 MGFEPQIRKILSQI-------------------------PRPDRQTLMFSATWPKEVRQLAEDFLN-------NPI--QI 299 (519)
T ss_pred cccHHHHHHHHHhc-------------------------CCCcccEEEEeeeccHHHHHHHHHHhc-------Cce--EE
Confidence 99999999999887 2344599999999983 5555432211 121 11
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH-hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV-QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~-~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
. +++.........++++..... .......+..++.+.. ..++++||||.|++.|+.++..+...
T Consensus 300 ~--ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~------------ 364 (519)
T KOG0331|consen 300 N--VGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK------------ 364 (519)
T ss_pred E--ecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc------------
Confidence 1 121111111112222222221 1123345566666665 34579999999999999999887541
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
.+++..+||+.++.+|+.+++.|++|...|||||+++++|+|||++++||++
T Consensus 365 ----------------------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 365 ----------------------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred ----------------------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 1347789999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
++|. ++++|+||+||+||+| ..|.++.|++..+...
T Consensus 417 dfP~----~vEdYVHRiGRTGRa~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 417 DFPN----NVEDYVHRIGRTGRAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred CCCC----CHHHHHhhcCccccCC--CCceEEEEEeHHHHHH
Confidence 9987 8999999999999998 7999999999876544
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=461.21 Aligned_cols=361 Identities=22% Similarity=0.262 Sum_probs=274.7
Q ss_pred CcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHH
Q 000107 504 DLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSI 582 (2191)
Q Consensus 504 ~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raL 582 (2191)
++..||++.+.+.|++.||++||++|.++|+. +++|+|+|+++|||||||++|.+|+++.+.. .+.++|||+||++|
T Consensus 16 ~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~--il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraL 93 (742)
T TIGR03817 16 PWPAWAHPDVVAALEAAGIHRPWQHQARAAEL--AHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93 (742)
T ss_pred CCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHH--HHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHH
Confidence 56678999999999999999999999999987 8999999999999999999999999998876 45699999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCC---CCCCCCceEEEchHHHHHH-HHHh-hhcCCCCccceEEEccccccccc
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGG---SLPKDTSVAVCTIEKANSL-VNRM-LEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~---~l~~~~~IiV~TpEkl~~L-l~~l-~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
|.|+...++++. ..++++..+.|+.... .+..+++|+|+||+++... +... .-...++++++|||||+|.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 999999999876 4578888888876532 2344689999999998642 2210 0012378999999999999977
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccc---cccccccccce
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAAL---YETNFRPVPLE 734 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l---~~~~~RpvpL~ 734 (2191)
.+|..+..++.+++++... .+.++|+|++|||++|+.++++++.... +..+..|....
T Consensus 172 ~fg~~~~~il~rL~ri~~~-------------------~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~ 232 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCAR-------------------YGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGAR 232 (742)
T ss_pred ccHHHHHHHHHHHHHHHHh-------------------cCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCce
Confidence 4999999999999887532 2356899999999999888887764321 12222232222
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
.+............. ...............++..++..+.++||||+|++.|+.++..+.+.+....
T Consensus 233 ~~~~~~p~~~~~~~~------~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~------- 299 (742)
T TIGR03817 233 TVALWEPPLTELTGE------NGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVD------- 299 (742)
T ss_pred EEEEecCCccccccc------cccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-------
Confidence 222111110000000 0000000111223455666666788999999999999999998876542210
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
..+...|..||||+++++|..+++.|++|.+++||||+++++|||||++++||++
T Consensus 300 -------------------------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~ 354 (742)
T TIGR03817 300 -------------------------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIA 354 (742)
T ss_pred -------------------------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEe
Confidence 0123358889999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
+.++ +..+|+||+|||||.| ..|.+++++..
T Consensus 355 ~~P~----s~~~y~qRiGRaGR~G--~~g~ai~v~~~ 385 (742)
T TIGR03817 355 GFPG----TRASLWQQAGRAGRRG--QGALVVLVARD 385 (742)
T ss_pred CCCC----CHHHHHHhccccCCCC--CCcEEEEEeCC
Confidence 8877 8899999999999999 67999999874
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=468.38 Aligned_cols=429 Identities=20% Similarity=0.247 Sum_probs=310.3
Q ss_pred CCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEch
Q 000107 507 SWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLP 578 (2191)
Q Consensus 507 ~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P 578 (2191)
.+|++.+.+.+++ +|..|+|+|.++++. +++|+|++++||||||||++|.++++..+.. .+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~--il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKE-KFGTFTPPQRYAIPL--IHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHH-ccCCCCHHHHHHHHH--HHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 3478888888776 799999999999987 8999999999999999999999999988864 2347999999
Q ss_pred hHHHHHHHHHHHHHHhh-----------cc-CCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCc
Q 000107 579 YVSICAEKAEHLEVLLE-----------PL-GRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~-----------~l-g~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~ 642 (2191)
+++|+.|+++.+...+. .+ +++|...+|+..... +...++|+|||||++..+++...-...+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999987653221 22 667888888875321 334679999999999888764322235789
Q ss_pred cceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc
Q 000107 643 IGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA 722 (2191)
Q Consensus 643 l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~ 722 (2191)
+++|||||+|.+.+..||..++.++.+++.+. ....|+|++|||++|.++++.|+...
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----------------------~~~~q~IglSATl~~~~~va~~L~~~ 230 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA----------------------GGEFVRIGLSATIEPLEEVAKFLVGY 230 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc----------------------CCCCeEEEEecccCCHHHHHHHhcCc
Confidence 99999999999999889999999999998763 24679999999999999999999865
Q ss_pred ccccccccccceEEEEec---cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHH
Q 000107 723 LYETNFRPVPLEEYIKVG---NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799 (2191)
Q Consensus 723 l~~~~~RpvpL~e~i~~~---~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L 799 (2191)
......+++.+....... ..+........ .. ........+...+.+.+..++++||||+|++.|+.++..|
T Consensus 231 ~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~----~~--~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L 304 (876)
T PRK13767 231 EDDGEPRDCEIVDARFVKPFDIKVISPVDDLI----HT--PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNL 304 (876)
T ss_pred cccCCCCceEEEccCCCccceEEEeccCcccc----cc--ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 332223332211000000 00000000000 00 0011123445566666677889999999999999999888
Q ss_pred HHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 000107 800 SKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879 (2191)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstL 879 (2191)
.+.+... ....+|++|||+|+.++|..+++.|++|.++|||||+++
T Consensus 305 ~~~~~~~----------------------------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 305 RKRFPEE----------------------------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHhchhh----------------------------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 6533210 123469999999999999999999999999999999999
Q ss_pred cccCCCCCceEEeecCCCCCcccCcccccccccccCCCC-CCCceEEEEEeChhhHH----HHHhhhccCCCCccccccc
Q 000107 880 AAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG-IDTKGESMLICKPEEVK----KIMGLLNESCPPLHSCLSE 954 (2191)
Q Consensus 880 a~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G-~d~~Ge~ill~~~~e~~----~~~~ll~~~l~~l~S~L~~ 954 (2191)
++|||+|++++||++..+. +..+|+||+|||||.+ ....|.++... ..+.. ....+....++++.... .
T Consensus 351 e~GIDip~Vd~VI~~~~P~----sv~~ylQRiGRaGR~~g~~~~g~ii~~~-~~~l~e~~~~~~~~~~~~ie~~~~~~-~ 424 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPK----SVSRLLQRIGRAGHRLGEVSKGRIIVVD-RDDLVECAVLLKKAREGKIDRVHIPK-N 424 (876)
T ss_pred HhcCCCCCCcEEEEeCCCC----CHHHHHHhcccCCCCCCCCCcEEEEEcC-chhHHHHHHHHHHHHhCCCCCCCCCC-C
Confidence 9999999999999876654 8899999999999874 23456655543 33321 12234444444432221 1
Q ss_pred ccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcc
Q 000107 955 DKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRK 1011 (2191)
Q Consensus 955 ~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~ 1011 (2191)
...-+.+.++.+++.+ ..+.+++..++..|+.+...+. +....+|++|...+
T Consensus 425 ~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~l~~l~~~~ 476 (876)
T PRK13767 425 PLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLSD----EDFESVLRYLAGDY 476 (876)
T ss_pred cHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCCH----HHHHHHHHHHhccC
Confidence 1224566677777765 5689999999999998876652 44567888887663
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=401.71 Aligned_cols=338 Identities=22% Similarity=0.293 Sum_probs=276.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC--CEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG--KMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g--~kaL~I~P~raLA~q~ 586 (2191)
+.+.+++++.+.||..|+++|.++||. ++.|+++|..|.||||||.+|.+||+++++... ..++|++|+|+||.|+
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~--~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPV--ALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQI 145 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcch--hhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHH
Confidence 678999999999999999999999987 999999999999999999999999999999743 4899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
.+.++.+...+|++|..+.|+... ..+.+.++|+||||+++.+++.+. ....+..++++|+||+|.+.|..|+..
T Consensus 146 ~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-kgf~le~lk~LVlDEADrlLd~dF~~~ 224 (476)
T KOG0330|consen 146 AEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT-KGFSLEQLKFLVLDEADRLLDMDFEEE 224 (476)
T ss_pred HHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-cCccHHHhHHHhhchHHhhhhhhhHHH
Confidence 999999999999999999998754 235678999999999998888642 445788999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccc
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~ 742 (2191)
++.||..+ +...|.+++|||++. .+.+.+.+.+ .+|+.+.. ..
T Consensus 225 ld~ILk~i--------------------------p~erqt~LfsATMt~--kv~kL~rasl----~~p~~v~~-----s~ 267 (476)
T KOG0330|consen 225 LDYILKVI--------------------------PRERQTFLFSATMTK--KVRKLQRASL----DNPVKVAV-----SS 267 (476)
T ss_pred HHHHHHhc--------------------------CccceEEEEEeecch--hhHHHHhhcc----CCCeEEec-----cc
Confidence 99999887 356899999999983 3444444332 12222110 11
Q ss_pred cccchhhHHHHHHHhhc--cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhh
Q 000107 743 IYSKKMDVVRTILTAAN--LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820 (2191)
Q Consensus 743 ~~~~~~~~~r~l~~~~~--~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~ 820 (2191)
.| ..+..+...+- ....+...++.++.+. .|.++||||+|...+..++-.|..
T Consensus 268 ky----~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~------------------- 322 (476)
T KOG0330|consen 268 KY----QTVDHLKQTYLFVPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRN------------------- 322 (476)
T ss_pred hh----cchHHhhhheEeccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHh-------------------
Confidence 11 12222222111 1233455677777765 368999999999998888877644
Q ss_pred HHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCc
Q 000107 821 TSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRD 900 (2191)
Q Consensus 821 ~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~ 900 (2191)
+++....+||.|++..|.-.++.|++|...|||||++++||+|+|.+++|||++.|.
T Consensus 323 ---------------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~-- 379 (476)
T KOG0330|consen 323 ---------------------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT-- 379 (476)
T ss_pred ---------------------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC--
Confidence 223366799999999999999999999999999999999999999999999999876
Q ss_pred ccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 901 FIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 901 ~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
+..+|+||+||+||+| ..|.+|.+++.-|++.+.
T Consensus 380 --~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~q 413 (476)
T KOG0330|consen 380 --HSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQ 413 (476)
T ss_pred --cHHHHHHHcccccccC--CCcceEEEEehhhhHHHH
Confidence 7889999999999999 899999999987766544
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=448.20 Aligned_cols=343 Identities=20% Similarity=0.277 Sum_probs=265.2
Q ss_pred cCCcCCC-CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---------cCC
Q 000107 502 CLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---------TGK 571 (2191)
Q Consensus 502 ~l~L~~~-Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---------~g~ 571 (2191)
.+.+... ||+.+.+.+.+.||..|+|+|.++|+. ++.|+|+|++||||||||++|++|++.++.. .+.
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~--il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA--ALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 3444443 899999999999999999999999987 8999999999999999999999999987753 456
Q ss_pred EEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEE
Q 000107 572 MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIV 647 (2191)
Q Consensus 572 kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVV 647 (2191)
++|||+||++||.|+.+.++.+...+++++..++|+.... .+..+++|+|+||+++..++.+ ....++++++||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lV 275 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLV 275 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEE
Confidence 8999999999999999999988888888888888765421 2445789999999999988876 456789999999
Q ss_pred EcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccc-
Q 000107 648 IDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYE- 725 (2191)
Q Consensus 648 IDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~- 725 (2191)
|||+|.|.+.++...+..++..+ ++.|+++||||+++ .+.++.++......
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l---------------------------~~~q~l~~SATl~~~v~~l~~~~~~~~~~i 328 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQAL---------------------------SQPQVLLFSATVSPEVEKFASSLAKDIILI 328 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhC---------------------------CCCcEEEEEeeCCHHHHHHHHHhCCCCEEE
Confidence 99999999987776665555433 34699999999985 56677766543211
Q ss_pred ---ccccccc-ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHH
Q 000107 726 ---TNFRPVP-LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSK 801 (2191)
Q Consensus 726 ---~~~Rpvp-L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~ 801 (2191)
...++.. +...+. +... ......+..++........++||||+++..|+.++..|..
T Consensus 329 ~~~~~~~~~~~v~q~~~-----~~~~--------------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 329 SIGNPNRPNKAVKQLAI-----WVET--------------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred EeCCCCCCCcceeEEEE-----eccc--------------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 1111111 111110 0000 0011233444433333346899999999999988877643
Q ss_pred HHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccc
Q 000107 802 FLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAA 881 (2191)
Q Consensus 802 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~ 881 (2191)
.. +..+..+||+|++++|..+++.|++|.++|||||+++++
T Consensus 390 ~~---------------------------------------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 390 VT---------------------------------------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred cc---------------------------------------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 11 123788999999999999999999999999999999999
Q ss_pred cCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHh
Q 000107 882 GVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939 (2191)
Q Consensus 882 GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ 939 (2191)
|||+|++++||+++.+. +..+|+||+|||||.| ..|.+++|+++++...+.+
T Consensus 431 GiDip~v~~VI~~d~P~----s~~~yihRiGRaGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPN----TIKEYIHQIGRASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cCCcccCCEEEEeCCCC----CHHHHHHhccccccCC--CCeEEEEEEchhHHHHHHH
Confidence 99999999999987765 8899999999999999 7899999999877554443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=445.75 Aligned_cols=334 Identities=18% Similarity=0.268 Sum_probs=265.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-------cCCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-------TGKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-------~g~kaL~I~P~ra 581 (2191)
||+.+.+.+.+.||++|+|+|.++|+. ++.|+|+|++||||||||++|.+|++.++.. .++.+|||+||++
T Consensus 137 l~~~l~~~l~~~g~~~pt~iQ~~aip~--~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 137 FPDYILKSLKNAGFTEPTPIQVQGWPI--ALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 789999999999999999999999987 8999999999999999999999999988764 2568999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
||.|+.+.+..+....++++...+|+.... .+..+++|+|+||+++..++.+ ....+.++++|||||+|.+.+.
T Consensus 215 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhhc
Confidence 999999999998888888888888876432 2345689999999999888875 4457889999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhc-ccccccccccc---
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQA-ALYETNFRPVP--- 732 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a-~l~~~~~Rpvp--- 732 (2191)
++...+..++..+ .+..|+|++|||++. ...++.++-. .........+.
T Consensus 293 gf~~~i~~il~~~--------------------------~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~ 346 (545)
T PTZ00110 293 GFEPQIRKIVSQI--------------------------RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA 346 (545)
T ss_pred chHHHHHHHHHhC--------------------------CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc
Confidence 8888777776654 256799999999984 4555555432 11000000000
Q ss_pred ---ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 733 ---LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 733 ---L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
+...+.. . . .......+..++......+.++||||++++.|+.++..|...
T Consensus 347 ~~~i~q~~~~----~-~--------------~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~------- 400 (545)
T PTZ00110 347 CHNIKQEVFV----V-E--------------EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD------- 400 (545)
T ss_pred CCCeeEEEEE----E-e--------------chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-------
Confidence 0001100 0 0 011223455566555556789999999999999988877431
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
.+.+..+||++++++|..+++.|++|.++|||||+++++|||+|+++
T Consensus 401 ---------------------------------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 401 ---------------------------------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred ---------------------------------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 12267899999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
+||+++.+. +..+|+||+||+||.| ..|.||+|+++++...+
T Consensus 448 ~VI~~d~P~----s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~~~~~ 489 (545)
T PTZ00110 448 YVINFDFPN----QIEDYVHRIGRTGRAG--AKGASYTFLTPDKYRLA 489 (545)
T ss_pred EEEEeCCCC----CHHHHHHHhcccccCC--CCceEEEEECcchHHHH
Confidence 999988876 8899999999999999 78999999998765443
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=422.79 Aligned_cols=389 Identities=27% Similarity=0.433 Sum_probs=305.0
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.+| +|-.+|++||.. +..|.+++|+|+|++|||++|+.+|.-.- ..+.+++|..|.++|.+|+++.|+..|+..|
T Consensus 294 ~pF-elD~FQk~Ai~~--lerg~SVFVAAHTSAGKTvVAEYAialaq-~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYH--LERGDSVFVAAHTSAGKTVVAEYAIALAQ-KHMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCC-CccHHHHHHHHH--HHcCCeEEEEecCCCCcchHHHHHHHHHH-hhccceEecchhhhhccchHHHHHHhccccc-
Confidence 455 788999999987 88999999999999999999999886432 3688999999999999999999999887765
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.++|+. .+.++..++|+|.|.+-+++-+ +...++++..||+||+|.+.|..||..+|.++..+
T Consensus 369 ---LlTGDv---qinPeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl--------- 431 (1248)
T KOG0947|consen 369 ---LLTGDV---QINPEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML--------- 431 (1248)
T ss_pred ---eeecce---eeCCCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeeeec---------
Confidence 567765 4667889999999999888876 66678999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc------ccccccccccceEEEEeccccc---cchhhH
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIY---SKKMDV 750 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~------l~~~~~RpvpL~e~i~~~~~~~---~~~~~~ 750 (2191)
+..+++|++|||+||..++++|+|.. +.++.-|||||+.++..+...+ +....+
T Consensus 432 -----------------P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~f 494 (1248)
T KOG0947|consen 432 -----------------PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIF 494 (1248)
T ss_pred -----------------cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchh
Confidence 57899999999999999999999943 4577899999999998775544 111111
Q ss_pred HHH-HHHh--------------------------------hccC--------CCCh--hHHHHHHHHHHhcC-CcEEEEe
Q 000107 751 VRT-ILTA--------------------------------ANLG--------GKDP--DHIVELCDEVVQEG-HSVLIFC 786 (2191)
Q Consensus 751 ~r~-l~~~--------------------------------~~~~--------~~d~--d~l~~Ll~e~~~~g-~~vLVF~ 786 (2191)
+.. +... .... ..+. .....++..+.... -|++|||
T Consensus 495 l~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFv 574 (1248)
T KOG0947|consen 495 LLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFV 574 (1248)
T ss_pred hhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEE
Confidence 110 0000 0000 0011 24667777766543 6999999
Q ss_pred CchhHHHHHHHHHHHHHhhcccccCCCCchhhh----hHHHHHHhhcCCCCCCh--hhhhhcCCcEEEEcCCCCHHHHHH
Q 000107 787 SSRKGCESTARHVSKFLKKFSINVHSSDSEFID----ITSAIDALRRCPAGLDP--VLEETLPSGVAYHHAGLTVEEREV 860 (2191)
Q Consensus 787 ~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~~~~gld~--~L~~~l~~GVa~hHagLs~~eR~~ 860 (2191)
-||+.|+..|..|...- ... ..+..+ +.+....|+.....+.. .+.+++.+|++.||||+-+--++.
T Consensus 575 FSkkrCde~a~~L~~~n----L~~---~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 575 FSKKRCDEYADYLTNLN----LTD---SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred EccccHHHHHHHHhccC----ccc---chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 99999999999986531 111 112222 23333444333222332 346788899999999999999999
Q ss_pred HHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCc--ccCcccccccccccCCCCCCCceEEEEEeChh--hH
Q 000107 861 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRD--FIDGTRYRQMAGRAGRTGIDTKGESMLICKPE--EV 934 (2191)
Q Consensus 861 Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~--~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~--e~ 934 (2191)
||-.|..|.++||+||.|+|+|||.|++.|||++-+ .|++ .+.+-+|.||+|||||.|.|..|.+|++|... +.
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~ 727 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSA 727 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCH
Confidence 999999999999999999999999999999998643 2333 47788999999999999999999999999874 56
Q ss_pred HHHHhhhccCCCCccccccc
Q 000107 935 KKIMGLLNESCPPLHSCLSE 954 (2191)
Q Consensus 935 ~~~~~ll~~~l~~l~S~L~~ 954 (2191)
..+.+++.+...++.|.+.-
T Consensus 728 a~l~~li~G~~~~L~SQFRl 747 (1248)
T KOG0947|consen 728 ATLKRLIMGGPTRLESQFRL 747 (1248)
T ss_pred HHHhhHhcCCCchhhhhhhh
Confidence 77888999888888888753
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=426.80 Aligned_cols=334 Identities=21% Similarity=0.283 Sum_probs=257.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---------cCCEEEEEchh
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---------TGKMALLVLPY 579 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---------~g~kaL~I~P~ 579 (2191)
|++.+.+.+.+.||..|+|+|.+||+. ++.|+|++++||||||||++|+++++..+.. .+.++||++|+
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~--il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPL--TLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 789999999999999999999999987 8999999999999999999999999988863 24589999999
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
++||.|+++.+..+....|+++..++|+.... .+..+++|+|+||+++..++++ ....++++++|||||+|++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHHh
Confidence 99999999999999888899999998875421 2345689999999999888865 45578999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcccccc---cc-c
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAALYET---NF-R 729 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~l~~~---~~-R 729 (2191)
+.++...++.++..+.. ....+.+++|||++. ...+. .+++...+.. .. .
T Consensus 171 ~~~f~~~i~~i~~~~~~------------------------~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~ 226 (423)
T PRK04837 171 DLGFIKDIRWLFRRMPP------------------------ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKT 226 (423)
T ss_pred hcccHHHHHHHHHhCCC------------------------ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 98887777776655411 134578999999974 33332 2332211100 00 0
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
...+.+.+. +.... .....+..++.. ....++||||+++..|+.++..|...
T Consensus 227 ~~~i~~~~~-----~~~~~--------------~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~------- 278 (423)
T PRK04837 227 GHRIKEELF-----YPSNE--------------EKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAAD------- 278 (423)
T ss_pred CCceeEEEE-----eCCHH--------------HHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhC-------
Confidence 000111000 00000 011122233222 13478999999999999888877431
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
.+.+.++||+|++++|..+++.|++|.++|||||+++++|||+|+++
T Consensus 279 ---------------------------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 279 ---------------------------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred ---------------------------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 12389999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
+||+++.+. +..+|+||+|||||.| ..|.|++|+.+.+...+
T Consensus 326 ~VI~~d~P~----s~~~yiqR~GR~gR~G--~~G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 326 HVFNYDLPD----DCEDYVHRIGRTGRAG--ASGHSISLACEEYALNL 367 (423)
T ss_pred EEEEeCCCC----chhheEeccccccCCC--CCeeEEEEeCHHHHHHH
Confidence 999988765 8899999999999999 78999999998764443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=426.66 Aligned_cols=329 Identities=23% Similarity=0.271 Sum_probs=258.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--------CCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--------GKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--------g~kaL~I~P~r 580 (2191)
|++.+.+.+.+.||.+|+|+|.+||+. ++.++|+|++||||||||++|.++++..+... ..++|||+||+
T Consensus 8 l~~~l~~~l~~~g~~~pt~iQ~~ai~~--il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPIQQQAIPA--VLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 678999999999999999999999987 89999999999999999999999999988642 23799999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+++.+..+...+++++..++|+.... .+...++|+||||+++.+++.+ ....++++++|||||+|++.+
T Consensus 86 eLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 86 ELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 9999999999999888889988888876432 2345689999999999888765 445689999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhcccc--cccccc---
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALY--ETNFRP--- 730 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~--~~~~Rp--- 730 (2191)
+++...+..++..+ +...|+++||||+++ ...++.++..... ....+.
T Consensus 164 ~~~~~~i~~il~~l--------------------------~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 217 (456)
T PRK10590 164 MGFIHDIRRVLAKL--------------------------PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTAS 217 (456)
T ss_pred cccHHHHHHHHHhC--------------------------CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccc
Confidence 88777777766554 245799999999986 5566655543211 000011
Q ss_pred ccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 731 VPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
-.+..++... +......++..++. ...++||||+++..|+.++..|.+.
T Consensus 218 ~~i~~~~~~~-----------------------~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~------ 268 (456)
T PRK10590 218 EQVTQHVHFV-----------------------DKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD------ 268 (456)
T ss_pred cceeEEEEEc-----------------------CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC------
Confidence 0111111100 00011122233332 2368999999999999888777431
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 269 ----------------------------------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v 314 (456)
T PRK10590 269 ----------------------------------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 (456)
T ss_pred ----------------------------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccC
Confidence 1237889999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 889 RVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 889 ~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
++||++..+. +..+|+||+|||||.| ..|.+++|+..++...
T Consensus 315 ~~VI~~~~P~----~~~~yvqR~GRaGR~g--~~G~ai~l~~~~d~~~ 356 (456)
T PRK10590 315 PHVVNYELPN----VPEDYVHRIGRTGRAA--ATGEALSLVCVDEHKL 356 (456)
T ss_pred CEEEEeCCCC----CHHHhhhhccccccCC--CCeeEEEEecHHHHHH
Confidence 9999987765 7889999999999999 6899999998876443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=427.06 Aligned_cols=332 Identities=21% Similarity=0.297 Sum_probs=260.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.++++..+... +.++||++||++||.|+
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~--~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPA--ILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQV 88 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHH
Confidence 778999999999999999999999987 89999999999999999999999999987643 34799999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
.+.++.+.... ++++..++|+.... .+..+++|+||||+++..++++ ....++++++||+||+|++.+.++..
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g~~~ 166 (460)
T PRK11776 89 AKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMGFQD 166 (460)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcCcHH
Confidence 99998877654 68888899876432 2456789999999999988876 45568899999999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhcc-cc---ccccccccceEE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAA-LY---ETNFRPVPLEEY 736 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~-l~---~~~~RpvpL~e~ 736 (2191)
.++.++..+ +...|+++||||+++ ...++..+... .. ........++.+
T Consensus 167 ~l~~i~~~~--------------------------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~ 220 (460)
T PRK11776 167 AIDAIIRQA--------------------------PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQR 220 (460)
T ss_pred HHHHHHHhC--------------------------CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEE
Confidence 887776655 356799999999984 34444433211 10 011111111111
Q ss_pred EEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCch
Q 000107 737 IKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816 (2191)
Q Consensus 737 i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~ 816 (2191)
+... .. ....+.+..++.. ....++||||+|++.|+.++..|...
T Consensus 221 ~~~~------~~-------------~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~-------------- 265 (460)
T PRK11776 221 FYEV------SP-------------DERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQ-------------- 265 (460)
T ss_pred EEEe------Cc-------------HHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhC--------------
Confidence 1100 00 0011223333322 13468999999999999999887541
Q ss_pred hhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC
Q 000107 817 FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896 (2191)
Q Consensus 817 ~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~ 896 (2191)
...+.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+++.
T Consensus 266 --------------------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 266 --------------------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred --------------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC
Confidence 123889999999999999999999999999999999999999999999999887
Q ss_pred CCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 897 IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 897 ~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
+. +..+|+||+|||||.| ..|.||+++.+.+...+
T Consensus 320 p~----~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 320 AR----DPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CC----CHhHhhhhcccccCCC--CcceEEEEEchhHHHHH
Confidence 66 7889999999999999 68999999998775543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=431.22 Aligned_cols=334 Identities=19% Similarity=0.249 Sum_probs=258.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---------CCEEEEEchh
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---------GKMALLVLPY 579 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---------g~kaL~I~P~ 579 (2191)
|++.+++.|.+.||..|||+|.+||+. ++.|+|+|++||||||||++|++++++.+... +.++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~--~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPV--ALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCc
Confidence 778999999999999999999999987 99999999999999999999999999988642 3689999999
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
++||.|+++.+..+...+++++..++|+.... .+..+++|+|+||+++..++.+. ....+..+++|||||+|++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-~~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-KVVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-cccchhheeeeEecCHHHHh
Confidence 99999999999999888999999999976432 13456899999999998887642 22457889999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH-HHHHhhccc---cccc-cc
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA-VADWLQAAL---YETN-FR 729 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~-la~wL~a~l---~~~~-~R 729 (2191)
+.++...++.++.++.. ....|+++||||+++ ... ...++.... +... ..
T Consensus 173 d~gf~~~i~~il~~lp~------------------------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~ 228 (572)
T PRK04537 173 DLGFIKDIRFLLRRMPE------------------------RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETIT 228 (572)
T ss_pred hcchHHHHHHHHHhccc------------------------ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccc
Confidence 98888888887766621 135799999999985 222 223333210 0000 00
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
...+...+... ... .....+..++.. ..+.++||||+|+..|+.++..|.+.
T Consensus 229 ~~~i~q~~~~~-----~~~--------------~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~------- 280 (572)
T PRK04537 229 AARVRQRIYFP-----ADE--------------EKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERH------- 280 (572)
T ss_pred ccceeEEEEec-----CHH--------------HHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHc-------
Confidence 00011111100 000 001122222221 24679999999999999988877431
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
.+.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 281 ---------------------------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 281 ---------------------------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred ---------------------------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 12389999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
+||+++.+. +..+|+||+|||||.| ..|.||+|+.+.+...
T Consensus 328 ~VInyd~P~----s~~~yvqRiGRaGR~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 328 YVYNYDLPF----DAEDYVHRIGRTARLG--EEGDAISFACERYAMS 368 (572)
T ss_pred EEEEcCCCC----CHHHHhhhhcccccCC--CCceEEEEecHHHHHH
Confidence 999987654 8899999999999999 6899999998866443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=405.43 Aligned_cols=390 Identities=29% Similarity=0.463 Sum_probs=302.0
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
+|-|+|.++|.. +-.+++++|+|.|++|||.+|+.+|...+. .+.++||..|.++|.+|+|++|..-|+.. +.
T Consensus 129 ~LDpFQ~~aI~C--idr~eSVLVSAHTSAGKTVVAeYAIA~sLr-~kQRVIYTSPIKALSNQKYREl~~EF~DV----GL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC--IDRGESVLVSAHTSAGKTVVAEYAIAMSLR-EKQRVIYTSPIKALSNQKYRELLEEFKDV----GL 201 (1041)
T ss_pred ccCchHhhhhhh--hcCCceEEEEeecCCCcchHHHHHHHHHHH-hcCeEEeeChhhhhcchhHHHHHHHhccc----ce
Confidence 688999999987 889999999999999999999999987765 58899999999999999999998777654 45
Q ss_pred EeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCC
Q 000107 604 YYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683 (2191)
Q Consensus 604 ~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~ 683 (2191)
.+|+.+ +.++...+|+|.|.+-+++-+ +...++++..||+||+|.|-|..||..+|..|-.|
T Consensus 202 MTGDVT---InP~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll------------- 263 (1041)
T KOG0948|consen 202 MTGDVT---INPDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL------------- 263 (1041)
T ss_pred eeccee---eCCCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEEec-------------
Confidence 567653 456788999999998888876 56678999999999999999999999999877655
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhh------ccccccccccccceEEEEe--cccccc---ch-----
Q 000107 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ------AALYETNFRPVPLEEYIKV--GNAIYS---KK----- 747 (2191)
Q Consensus 684 ~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~------a~l~~~~~RpvpL~e~i~~--~~~~~~---~~----- 747 (2191)
+.+++.|++|||+||+.++|+|+- +.++-++|||.||+.|+.. ++.+|- .+
T Consensus 264 -------------P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~Fre 330 (1041)
T KOG0948|consen 264 -------------PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFRE 330 (1041)
T ss_pred -------------cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccch
Confidence 578999999999999999999996 4467899999999998765 333331 11
Q ss_pred hhHHH---HHHHhhcc-----------------CCCChhHHHHHHHHHHhc-CCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 748 MDVVR---TILTAANL-----------------GGKDPDHIVELCDEVVQE-GHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 748 ~~~~r---~l~~~~~~-----------------~~~d~d~l~~Ll~e~~~~-g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
..+.. .+...... .......+..++..+... ..+||||+-|+++||.+|..+.+.-
T Consensus 331 dnF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kld--- 407 (1041)
T KOG0948|consen 331 DNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLD--- 407 (1041)
T ss_pred HHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCc---
Confidence 11111 11111000 011122455666666554 4799999999999999999886532
Q ss_pred ccccCCCCchhh--hhHHHHHHhhcCCCCCC--hhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 000107 807 SINVHSSDSEFI--DITSAIDALRRCPAGLD--PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG 882 (2191)
Q Consensus 807 ~~~~~~~~~~~~--~~~~~~~~L~~~~~gld--~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~G 882 (2191)
.+.+.+ .+.. -+...++.|.....++. ....-++.+||+.||+||-+--++.||=.|..|.++||+||.|++.|
T Consensus 408 -fN~deE-k~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiG 485 (1041)
T KOG0948|consen 408 -FNTDEE-KELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIG 485 (1041)
T ss_pred -CCChhH-HHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhc
Confidence 111000 0111 13345555554433332 22345678999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeecCC----CCCcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHHHhhhccCCCCccccccccc
Q 000107 883 VNLPARRVIFRQPR----IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPPLHSCLSEDK 956 (2191)
Q Consensus 883 VNLPav~VVI~~p~----~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~~~ll~~~l~~l~S~L~~~~ 956 (2191)
+|.|+.+||+-..+ -...|++.-+|+||.|||||.|.|..|.||++.+.. +....+.++++...++.|.++-..
T Consensus 486 LNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtY 564 (1041)
T KOG0948|consen 486 LNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTY 564 (1041)
T ss_pred cCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHH
Confidence 99999999986432 123589999999999999999999999999999874 455667899999999988876433
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=415.45 Aligned_cols=331 Identities=18% Similarity=0.242 Sum_probs=261.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYVSI 582 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~raL 582 (2191)
|++.+++.|.+.||.+|+++|.++++. ++.|+|++++||||+|||++|++++++.+.. .+.++||++|+++|
T Consensus 8 l~~~l~~~l~~~g~~~p~~iQ~~ai~~--~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eL 85 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAIQAEAIPP--ALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTREL 85 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHH
Confidence 668999999999999999999999987 8899999999999999999999999998864 23589999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
|.|+++.+..+...+++.+..++|+.... .+..+++|+|+||+++..++.+ ....+.++++|||||+|.+.+.+
T Consensus 86 a~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 86 AMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC
Confidence 99999999999888899999999876432 1345689999999999888765 44467899999999999999988
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcccccccccccc----
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAALYETNFRPVP---- 732 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~l~~~~~Rpvp---- 732 (2191)
++..++.+...+ +...|+++||||++. ..++..++..........+..
T Consensus 164 ~~~~~~~i~~~~--------------------------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 217 (434)
T PRK11192 164 FAQDIETIAAET--------------------------RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERK 217 (434)
T ss_pred cHHHHHHHHHhC--------------------------ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccccc
Confidence 888887776544 234699999999963 566666664321111110100
Q ss_pred -ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 733 -LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 733 -L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
+..++. ..........++..++. ...++||||+++..|+.++..|...
T Consensus 218 ~i~~~~~----------------------~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------- 268 (434)
T PRK11192 218 KIHQWYY----------------------RADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA------- 268 (434)
T ss_pred CceEEEE----------------------EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-------
Confidence 000000 00111222334444443 3578999999999999988887531
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
...+.++||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 269 ---------------------------------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 269 ---------------------------------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred ---------------------------------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 11388999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
+||++..+. +...|+||+|||||.| ..|.++++++..+...+
T Consensus 316 ~VI~~d~p~----s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 316 HVINFDMPR----SADTYLHRIGRTGRAG--RKGTAISLVEAHDHLLL 357 (434)
T ss_pred EEEEECCCC----CHHHHhhcccccccCC--CCceEEEEecHHHHHHH
Confidence 999877654 7889999999999999 78999999988765443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=426.67 Aligned_cols=339 Identities=26% Similarity=0.353 Sum_probs=265.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCC-E-EEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGK-M-ALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~-k-aL~I~P~raLA~ 584 (2191)
|++.+++.+.+.||..|+|+|.++||. ++.|+|+++.|+||+|||++|.+|+++.+.. ... . +|+++|||+||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~--~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPL--ILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHH
Confidence 678999999999999999999999987 9999999999999999999999999999763 222 2 999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
|+++.+..+.... ++++..++|+.... .+..+++|+|+||+++.+++.+ ....++.+.++|+||+++|.|.++
T Consensus 114 Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~Gf 191 (513)
T COG0513 114 QIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMGF 191 (513)
T ss_pred HHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCCC
Confidence 9999999998888 78999999987532 2344699999999999999987 467899999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEe
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~ 739 (2191)
...++.++..+ +.+.|++++|||+++ .+..|....+- .|+.+ .+..
T Consensus 192 ~~~i~~I~~~~--------------------------p~~~qtllfSAT~~~--~i~~l~~~~l~----~p~~i--~v~~ 237 (513)
T COG0513 192 IDDIEKILKAL--------------------------PPDRQTLLFSATMPD--DIRELARRYLN----DPVEI--EVSV 237 (513)
T ss_pred HHHHHHHHHhC--------------------------CcccEEEEEecCCCH--HHHHHHHHHcc----CCcEE--EEcc
Confidence 99999998877 346899999999986 46655544332 22211 1110
Q ss_pred ccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchh
Q 000107 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817 (2191)
Q Consensus 740 ~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~ 817 (2191)
... ..... .+..... .....+.-..++..++. ...++||||+|+..|+.++..|...
T Consensus 238 ~~~--~~~~~---~i~q~~~-~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--------------- 296 (513)
T COG0513 238 EKL--ERTLK---KIKQFYL-EVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--------------- 296 (513)
T ss_pred ccc--ccccc---CceEEEE-EeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------------
Confidence 000 00000 0000000 00111112223333333 2346999999999999988776441
Q ss_pred hhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 818 ~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
++.+..+||+|++++|..+++.|++|.++|||||+++++|||||++.+||+++.+
T Consensus 297 -------------------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p 351 (513)
T COG0513 297 -------------------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLP 351 (513)
T ss_pred -------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCC
Confidence 2238899999999999999999999999999999999999999999999999887
Q ss_pred CCcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHH
Q 000107 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKI 937 (2191)
Q Consensus 898 g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~ 937 (2191)
. +...|+||+||+||+| ..|.++.|+.+. +...+
T Consensus 352 ~----~~e~yvHRiGRTgRaG--~~G~ai~fv~~~~e~~~l 386 (513)
T COG0513 352 L----DPEDYVHRIGRTGRAG--RKGVAISFVTEEEEVKKL 386 (513)
T ss_pred C----CHHHheeccCccccCC--CCCeEEEEeCcHHHHHHH
Confidence 5 8899999999999999 899999999874 54443
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=417.36 Aligned_cols=419 Identities=22% Similarity=0.266 Sum_probs=317.6
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-------CEEEEEchhH
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG-------KMALLVLPYV 580 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g-------~kaL~I~P~r 580 (2191)
.|++.+.++|++. |.+|+|.|.++|+. +.+|+|++++||||||||++|.+|++..+...+ -.+|||.|.+
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~--i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPE--IHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHH--HhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 4889999999988 99999999999987 999999999999999999999999999998762 4799999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
||.+.+..++...+..+|+.|...+|++... ...+.+||+|+|||.+..++..-.....|.++.+|||||+|.+.+
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 9999999999999999999999999998653 244568999999999988876433445789999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEE
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY 736 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~ 736 (2191)
..||..+-..|.+|+.+. .++|.||+|||+.+++++++||...-.....-.++....
T Consensus 164 sKRG~~Lsl~LeRL~~l~-----------------------~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~ 220 (814)
T COG1201 164 SKRGVQLALSLERLRELA-----------------------GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKK 220 (814)
T ss_pred cccchhhhhhHHHHHhhC-----------------------cccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCc
Confidence 999999999999998874 268999999999999999999986421000001111111
Q ss_pred EEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCch
Q 000107 737 IKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816 (2191)
Q Consensus 737 i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~ 816 (2191)
..+.-......... .+.....+...+.+.++...++|||+|||..+|.++..|.+...
T Consensus 221 ~~i~v~~p~~~~~~----------~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~------------ 278 (814)
T COG1201 221 LEIKVISPVEDLIY----------DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP------------ 278 (814)
T ss_pred ceEEEEecCCcccc----------ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC------------
Confidence 11000000000000 02233456677778888888999999999999999988866431
Q ss_pred hhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC
Q 000107 817 FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896 (2191)
Q Consensus 817 ~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~ 896 (2191)
..|+.|||.|+.+.|..+|++|++|.++++|||++++-|||+-++..||++..
T Consensus 279 ---------------------------~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 279 ---------------------------DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred ---------------------------CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC
Confidence 23889999999999999999999999999999999999999999999987554
Q ss_pred CCCcccCcccccccccccCCCCCCCceEEEEEeChh-hH----HHHHhhhccCCC---CcccccccccchhhHHHHHHHh
Q 000107 897 IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EV----KKIMGLLNESCP---PLHSCLSEDKNGMTHAILEVVA 968 (2191)
Q Consensus 897 ~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~----~~~~~ll~~~l~---~l~S~L~~~~~~l~~~iLeiia 968 (2191)
|. ++..++||+||+|+.- +.....++++... +. ........+.++ +..-+| .-+.+.++.++.
T Consensus 332 P~----sV~r~lQRiGRsgHr~-~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~L----DVLaq~ivg~~~ 402 (814)
T COG1201 332 PK----SVNRFLQRIGRAGHRL-GEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPL----DVLAQQIVGMAL 402 (814)
T ss_pred cH----HHHHHhHhcccccccc-CCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcch----hHHHHHHHHHHh
Confidence 43 8899999999999643 2455667776652 21 112233333333 222222 234555666655
Q ss_pred cccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHH--ccccee
Q 000107 969 GGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCH--RKFLEW 1015 (2191)
Q Consensus 969 ~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~--~~~i~~ 1015 (2191)
.. .-+..++.+.+..++-+..-+ .+.....+++|.. ..++..
T Consensus 403 ~~-~~~~~~~y~~vrraypy~~L~----~e~f~~v~~~l~~~~~~~~~i 446 (814)
T COG1201 403 EK-VWEVEEAYRVVRRAYPYADLS----REDFRLVLRYLAGEKNVYAKI 446 (814)
T ss_pred hC-cCCHHHHHHHHHhccccccCC----HHHHHHHHHHHhhcccceeEE
Confidence 55 667888888888887666554 3445677888887 555543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=417.76 Aligned_cols=333 Identities=19% Similarity=0.242 Sum_probs=254.4
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---------CCEEEEEch
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---------GKMALLVLP 578 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---------g~kaL~I~P 578 (2191)
+|++.+.+.+.+.||.+||+||.+||+. ++.|+|+|+++|||||||++|.++++..+... +.++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~--~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGY--TLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeC
Confidence 4789999999999999999999999987 99999999999999999999999999988753 468999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----C-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----S-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
|++||.|+++.++.+...+++.+..++|+.... . ....++|+|+||+++..++.+ ....++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~--~~~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR--GEVHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCcccccCceEEechHHH
Confidence 999999999999999888899999888875321 1 234579999999999887765 345789999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhcccc-c--ccc
Q 000107 654 VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALY-E--TNF 728 (2191)
Q Consensus 654 l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~-~--~~~ 728 (2191)
+.+.++...+..++..+. .....|+|++|||+++ ...++. |+..... . ...
T Consensus 249 l~~~~~~~~l~~i~~~~~------------------------~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 304 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTP------------------------RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN 304 (475)
T ss_pred HHhcccHHHHHHHHHhCC------------------------CCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc
Confidence 988776665655554331 0134699999999874 444443 3322111 0 000
Q ss_pred -ccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcc
Q 000107 729 -RPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFS 807 (2191)
Q Consensus 729 -RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~ 807 (2191)
..-.+..++... . .......+..++.. ....++||||++++.|+.++..|...
T Consensus 305 ~~~~~~~~~~~~~------~-------------~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~----- 358 (475)
T PRK01297 305 VASDTVEQHVYAV------A-------------GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKD----- 358 (475)
T ss_pred CCCCcccEEEEEe------c-------------chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHc-----
Confidence 000011111000 0 00011122222221 12368999999999999888776331
Q ss_pred cccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC
Q 000107 808 INVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPA 887 (2191)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPa 887 (2191)
...+..+||+|+.++|..+++.|++|.++|||||+++++|||+|+
T Consensus 359 -----------------------------------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 359 -----------------------------------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred -----------------------------------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 123788999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 888 RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 888 v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
+++||+++.++ +..+|+||+|||||.| ..|.+++|+.+++..
T Consensus 404 v~~VI~~~~P~----s~~~y~Qr~GRaGR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 404 ISHVINFTLPE----DPDDYVHRIGRTGRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred CCEEEEeCCCC----CHHHHHHhhCccCCCC--CCceEEEEecHHHHH
Confidence 99999988876 8899999999999999 689999999887643
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=421.12 Aligned_cols=332 Identities=21% Similarity=0.311 Sum_probs=257.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+++.+.++||.+|+|+|.++|+. ++.++++|++||||+|||++|.++++..+.. .+.++||++||++||.|+
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~--ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPH--LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHH
Confidence 779999999999999999999999987 8999999999999999999999999988754 345899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.+..+...+ ++.+..++|+.... .+..+++|+|+||+++.+++.+ ....++++++|||||+|++.+.++..
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~gf~~ 168 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMGFIE 168 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcccHH
Confidence 99998887665 78888888876431 2345789999999999888765 44568999999999999999888877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhccc-c--cccccccc-ce-
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAAL-Y--ETNFRPVP-LE- 734 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l-~--~~~~Rpvp-L~- 734 (2191)
.++.++..+ +...|+++||||+|+ ...+.. |+.... + .......+ +.
T Consensus 169 di~~Il~~l--------------------------p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 169 DVETIMAQI--------------------------PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 777776655 356799999999986 333433 332110 0 00000000 00
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
.++.+. .....+.+..++.. ....++||||+|+..|+.++..|...
T Consensus 223 ~~~~v~--------------------~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~------------ 268 (629)
T PRK11634 223 SYWTVW--------------------GMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERN------------ 268 (629)
T ss_pred EEEEec--------------------hhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhC------------
Confidence 011000 00011223333221 13468999999999999988877431
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
.+.+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++.+||++
T Consensus 269 ----------------------------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~ 320 (629)
T PRK11634 269 ----------------------------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNY 320 (629)
T ss_pred ----------------------------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEe
Confidence 2347889999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
+.+. +..+|+||+|||||.| ..|.+++++.+.+...+.
T Consensus 321 d~P~----~~e~yvqRiGRtGRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 321 DIPM----DSESYVHRIGRTGRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred CCCC----CHHHHHHHhccccCCC--CcceEEEEechHHHHHHH
Confidence 7764 8899999999999999 789999999987654433
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=406.73 Aligned_cols=340 Identities=18% Similarity=0.259 Sum_probs=249.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|++++++.+.. .+.++||++|+++|+.|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~--i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKP--ILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQI 112 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHH
Confidence 668888999999999999999999987 9999999999999999999999999987753 466899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
.+.+..+....+..+...+|+... ..+..+.+|+|+||+++..++.+ ....++++++|||||+|++.+.+++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~~~~~ 190 (401)
T PTZ00424 113 QKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRGFKGQ 190 (401)
T ss_pred HHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcchHHH
Confidence 999988887777787777776532 11334579999999998887765 445689999999999999988766555
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccc
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~ 742 (2191)
+..++..+ ++.+|+|++|||+++ .+..+....+..+....++.......+..
T Consensus 191 ~~~i~~~~--------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (401)
T PTZ00424 191 IYDVFKKL--------------------------PPDVQVALFSATMPN--EILELTTKFMRDPKRILVKKDELTLEGIR 242 (401)
T ss_pred HHHHHhhC--------------------------CCCcEEEEEEecCCH--HHHHHHHHHcCCCEEEEeCCCCcccCCce
Confidence 54444332 356899999999986 22222211111110000000000000000
Q ss_pred cccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 743 ~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
.+....... ....+.+..++.. ....++||||+|++.|+.++..+...
T Consensus 243 ~~~~~~~~~----------~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~-------------------- 290 (401)
T PTZ00424 243 QFYVAVEKE----------EWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHER-------------------- 290 (401)
T ss_pred EEEEecChH----------HHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHC--------------------
Confidence 000000000 0001122222221 13468999999999998888766431
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCccc
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFI 902 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~i 902 (2191)
..++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++.+.
T Consensus 291 --------------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~---- 346 (401)
T PTZ00424 291 --------------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA---- 346 (401)
T ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC----
Confidence 12489999999999999999999999999999999999999999999999876654
Q ss_pred CcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
+..+|+||+|||||.| ..|.|++++++++...+.
T Consensus 347 s~~~y~qr~GRagR~g--~~G~~i~l~~~~~~~~~~ 380 (401)
T PTZ00424 347 SPENYIHRIGRSGRFG--RKGVAINFVTPDDIEQLK 380 (401)
T ss_pred CHHHEeecccccccCC--CCceEEEEEcHHHHHHHH
Confidence 8889999999999998 789999999987755544
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=384.19 Aligned_cols=357 Identities=22% Similarity=0.302 Sum_probs=276.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----------cCCEEEEEc
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----------TGKMALLVL 577 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----------~g~kaL~I~ 577 (2191)
+|.+++.++.+.||..|+|+|.++|+. .++++|+|..|.||||||++|++|++-.+.. .|+.+++++
T Consensus 252 ~P~e~l~~I~~~~y~eptpIqR~aipl--~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiila 329 (673)
T KOG0333|consen 252 FPLELLSVIKKPGYKEPTPIQRQAIPL--GLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILA 329 (673)
T ss_pred CCHHHHHHHHhcCCCCCchHHHhhccc--hhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeec
Confidence 899999999999999999999999987 8999999999999999999999999876643 478999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 578 P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
|||+||+|+.++-.+++..+|+++..+.|+.... .+..+++|+|+||+++.+.+.+ ...-+....+||+||++.
T Consensus 330 ptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldeadr 407 (673)
T KOG0333|consen 330 PTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADR 407 (673)
T ss_pred hHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccchhh
Confidence 9999999999999999999999999999887532 3567899999999999887765 344678899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcccc---cccc
Q 000107 654 VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAALY---ETNF 728 (2191)
Q Consensus 654 l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~l~---~~~~ 728 (2191)
|.|.++.+.+..+|..+........++...++..-..+... ...-.|.++||||++. ++.++ .+|...++ ....
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~-~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g 486 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSS-SKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG 486 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccc-ccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC
Confidence 99999999999999988433221111000000000001111 1134799999999986 55555 45543322 2334
Q ss_pred ccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 729 RPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 729 RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
+|.|.-+...+--. ...+...+.+++... ...++|||+|+++.|+.+|+.|.+.
T Consensus 487 k~~~rveQ~v~m~~------------------ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~------ 540 (673)
T KOG0333|consen 487 KPTPRVEQKVEMVS------------------EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKA------ 540 (673)
T ss_pred CCccchheEEEEec------------------chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhc------
Confidence 45443322211000 011123444444433 2469999999999999999888552
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
++.+..+|||-++++|+.++..|+.|...|||||+++++|||||+|
T Consensus 541 ----------------------------------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV 586 (673)
T KOG0333|consen 541 ----------------------------------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNV 586 (673)
T ss_pred ----------------------------------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcc
Confidence 3448889999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 889 RVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 889 ~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
.+||++++.. ++.+|.||+||+||+| ..|.++.|+++.+-.-
T Consensus 587 SlVinydmak----sieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 587 SLVINYDMAK----SIEDYTHRIGRTGRAG--KSGTAISFLTPADTAV 628 (673)
T ss_pred ceeeecchhh----hHHHHHHHhccccccc--cCceeEEEeccchhHH
Confidence 9999999876 8899999999999999 8999999999977443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=384.11 Aligned_cols=346 Identities=18% Similarity=0.244 Sum_probs=275.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-----EEEEEchhHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-----MALLVLPYVSIC 583 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~-----kaL~I~P~raLA 583 (2191)
|+.+++.++...||..|+|+|..|||. .+-|++++.||.||||||.+|.+|+|.+++-+.+ ++||++|||+||
T Consensus 188 LSRPlLka~~~lGy~~PTpIQ~a~IPv--allgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 188 LSRPLLKACSTLGYKKPTPIQVATIPV--ALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred cchHHHHHHHhcCCCCCCchhhhcccH--HhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 778999999999999999999999987 7889999999999999999999999999886433 799999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
.|++...+++.....+.|+...|+.... .+...+||+|+||+++.+++++. ....+++|.++|+||++.|.+.+|
T Consensus 266 iQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs-~sf~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS-PSFNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-CCccccceeEEEechHHHHHHHHH
Confidence 9999999999888889999999987542 25677999999999998888762 345789999999999999999988
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEEEE
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEYIK 738 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~i~ 738 (2191)
...+..|+..+ +.+.|.++|||||+. +.+++..--. + |++.++.
T Consensus 345 ademnEii~lc--------------------------pk~RQTmLFSATMteeVkdL~slSL~-------k--Pvrifvd 389 (691)
T KOG0338|consen 345 ADEMNEIIRLC--------------------------PKNRQTMLFSATMTEEVKDLASLSLN-------K--PVRIFVD 389 (691)
T ss_pred HHHHHHHHHhc--------------------------cccccceeehhhhHHHHHHHHHhhcC-------C--CeEEEeC
Confidence 88888777554 467899999999974 5555553211 2 3344443
Q ss_pred eccccccc-hhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchh
Q 000107 739 VGNAIYSK-KMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817 (2191)
Q Consensus 739 ~~~~~~~~-~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~ 817 (2191)
........ ..+++|.. .......+..+..|+..+. ...++||+.|++.|..+--.|-
T Consensus 390 ~~~~~a~~LtQEFiRIR---~~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllG----------------- 447 (691)
T KOG0338|consen 390 PNKDTAPKLTQEFIRIR---PKREGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLG----------------- 447 (691)
T ss_pred CccccchhhhHHHheec---cccccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHH-----------------
Confidence 22111000 01111110 0111233455667777776 4589999999999887644331
Q ss_pred hhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 818 ~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
+++..++-+||.|++++|-..++.|+.+.+.|||||+++++|+||+++.+|||+.+|
T Consensus 448 -----------------------Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 448 -----------------------LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred -----------------------HhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCc
Confidence 123336779999999999999999999999999999999999999999999999887
Q ss_pred CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 898 g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
. +...|+||+||+.|+| ..|.++.|+..++.+.++..+..
T Consensus 505 ~----t~e~Y~HRVGRTARAG--RaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 505 K----TIEHYLHRVGRTARAG--RAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred h----hHHHHHHHhhhhhhcc--cCcceEEEeccccHHHHHHHHhh
Confidence 6 7889999999999999 89999999999887777776654
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=428.32 Aligned_cols=421 Identities=18% Similarity=0.201 Sum_probs=279.9
Q ss_pred EEcCCCCchhHHHHHHHHHHHHhc------------CCEEEEEchhHHHHHHHHHHHHHHhh------------ccCCeE
Q 000107 546 YCASTSAGKSFVAEILMLRRLIST------------GKMALLVLPYVSICAEKAEHLEVLLE------------PLGRHV 601 (2191)
Q Consensus 546 i~APTGSGKTlvael~iL~~ll~~------------g~kaL~I~P~raLA~q~~~~l~~l~~------------~lg~~V 601 (2191)
|+||||||||++|.+++|..+... +.++|||+|+++|+.|+.+.++..+. .++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 589999999999999999988742 46899999999999999998875322 247889
Q ss_pred EEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 602 RSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 602 ~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
..++|+..... +.+.++|+|+|||++..++.+. ....++++++|||||+|.+.+..||..++.++.+|+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 99999876422 3456899999999999887642 234789999999999999998889999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc----cc-ccccccccceEEEEeccccccchhhHHH
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA----LY-ETNFRPVPLEEYIKVGNAIYSKKMDVVR 752 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~----l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r 752 (2191)
+.++|+|++|||++|++++++||+.. ++ ....++++++.++..... ...... ..
T Consensus 157 -------------------~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~-~~~~~~-~~ 215 (1490)
T PRK09751 157 -------------------HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANM-DDVSSV-AS 215 (1490)
T ss_pred -------------------CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCch-hhcccc-cc
Confidence 24689999999999999999999753 22 223455555433322110 000000 00
Q ss_pred HHHHh--hccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcC
Q 000107 753 TILTA--ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRC 830 (2191)
Q Consensus 753 ~l~~~--~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 830 (2191)
..... ..........+...+...+..+.++|||||||+.|+.++..|.+........ . .. .......+...
T Consensus 216 ~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~---~-~~---~~~~~~~~~~~ 288 (1490)
T PRK09751 216 GTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR---S-PS---IAVDAAHFEST 288 (1490)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc---c-cc---ccchhhhhhhc
Confidence 00000 0000000112222222334457899999999999999999997654211000 0 00 00000011000
Q ss_pred CCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCccccccc
Q 000107 831 PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQM 910 (2191)
Q Consensus 831 ~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~Qm 910 (2191)
.......+.......+.+|||+|++++|..||+.|++|.++|||||+++++|||+|++++||++..+. ++.+|+||
T Consensus 289 ~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~----sVas~LQR 364 (1490)
T PRK09751 289 SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL----SVASGLQR 364 (1490)
T ss_pred cccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC----CHHHHHHH
Confidence 00000001111123478999999999999999999999999999999999999999999999866654 89999999
Q ss_pred ccccCCCCCCCceEEEEEeChh-hHH----HHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhh
Q 000107 911 AGRAGRTGIDTKGESMLICKPE-EVK----KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985 (2191)
Q Consensus 911 iGRAGR~G~d~~Ge~ill~~~~-e~~----~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~t 985 (2191)
+|||||. .+..+.++++.... +.- .+..++...++++..... ...-+.+.++.+++.+ --+.+++...+..+
T Consensus 365 iGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~n-plDVLaqqiva~a~~~-~~~~d~l~~~vrra 441 (1490)
T PRK09751 365 IGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHN-PLDVLAQQTVAAAAMD-ALQVDEWYSRVRRA 441 (1490)
T ss_pred hCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCC-hHHHHHHHHHHHHhcC-CCCHHHHHHHhhcc
Confidence 9999997 34567777666542 211 234566777766533321 1224556667666654 34567777777766
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHH
Q 000107 986 LLNSTKPFQDVVKSAQDSLRWLCH 1009 (2191)
Q Consensus 986 ll~~~~~~~~~~~~~~~al~~L~~ 1009 (2191)
+-+..-+ .+..+..|++|..
T Consensus 442 ~pf~~L~----~~~f~~vl~~L~~ 461 (1490)
T PRK09751 442 APWKDLP----RRVFDATLDMLSG 461 (1490)
T ss_pred CCcccCC----HHHHHHHHHHHhc
Confidence 6555433 3456677888875
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=416.04 Aligned_cols=401 Identities=30% Similarity=0.479 Sum_probs=307.6
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
...|| .|.+||++++.. +..|.++++|||||+|||++++.++...+. +|.+++|+.|.+||.+|++++|...++..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~--Ler~esVlV~ApTssGKTvVaeyAi~~al~-~~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAI--LERGESVLVCAPTSSGKTVVAEYAIALALR-DGQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCC-CcCHHHHHHHHH--HhCCCcEEEEccCCCCcchHHHHHHHHHHH-cCCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 45677 799999999976 889999999999999999999999887665 57779999999999999999998877655
Q ss_pred CCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
--.|+.++|+. ...+++.++|+|.|.+-+++.+ ....+.++..||+||+|.|+|..||..+|.++-.+
T Consensus 190 ~~~vGL~TGDv---~IN~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l------- 257 (1041)
T COG4581 190 ADMVGLMTGDV---SINPDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL------- 257 (1041)
T ss_pred hhhccceecce---eeCCCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHHhc-------
Confidence 23356677765 3566789999999988888765 55689999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc------cccccccccccceEEEEeccccccc---hh
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA------ALYETNFRPVPLEEYIKVGNAIYSK---KM 748 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a------~l~~~~~RpvpL~e~i~~~~~~~~~---~~ 748 (2191)
+..+|+|+||||+||+.+++.|++. .++.+++||+||+.++..+..++.- ..
T Consensus 258 -------------------P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~ 318 (1041)
T COG4581 258 -------------------PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKK 318 (1041)
T ss_pred -------------------CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccc
Confidence 5678999999999999999999983 3668999999999998876444321 11
Q ss_pred h--------HHHHHHHhhcc-CC--------------------CChhHHHHHHHHHHh-cCCcEEEEeCchhHHHHHHHH
Q 000107 749 D--------VVRTILTAANL-GG--------------------KDPDHIVELCDEVVQ-EGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 749 ~--------~~r~l~~~~~~-~~--------------------~d~d~l~~Ll~e~~~-~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
. ..+.+...... .. ..+..-..++..+.. ..-++|+|+-+++.|+..+..
T Consensus 319 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~ 398 (1041)
T COG4581 319 KFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQI 398 (1041)
T ss_pred cchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHH
Confidence 1 11111100000 00 000111223333333 347999999999999999988
Q ss_pred HHHHHhhcccccCCCCch-hh-hhHHHHHHhhcCCCCCC---hhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEE
Q 000107 799 VSKFLKKFSINVHSSDSE-FI-DITSAIDALRRCPAGLD---PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~-~~-~~~~~~~~L~~~~~gld---~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVL 873 (2191)
+...- ......... +. -+...+..|.....++. ..+..++.+|+++||+||-+..|..|+..|..|.++|+
T Consensus 399 ~~~ld----l~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvv 474 (1041)
T COG4581 399 LSTLD----LVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVV 474 (1041)
T ss_pred hcccc----cccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEE
Confidence 76421 111111111 11 13445556666666664 56678899999999999999999999999999999999
Q ss_pred EecccccccCCCCCceEEeec----CCCCCcccCcccccccccccCCCCCCCceEEEEEeCh--hhHHHHHhhhccCCCC
Q 000107 874 TATSTLAAGVNLPARRVIFRQ----PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP--EEVKKIMGLLNESCPP 947 (2191)
Q Consensus 874 VATstLa~GVNLPav~VVI~~----p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~--~e~~~~~~ll~~~l~~ 947 (2191)
+||.|++.|+|.|+.+||+.. +--+..+++..+|.||.|||||.|+|..|.+|++-.+ .+......+......+
T Consensus 475 FaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~ 554 (1041)
T COG4581 475 FATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDP 554 (1041)
T ss_pred eehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCcc
Confidence 999999999999999999753 2223467999999999999999999999999999554 3356667788888889
Q ss_pred cccccccccc
Q 000107 948 LHSCLSEDKN 957 (2191)
Q Consensus 948 l~S~L~~~~~ 957 (2191)
+.|.+.-..+
T Consensus 555 L~s~f~~sy~ 564 (1041)
T COG4581 555 LRSQFRLSYN 564 (1041)
T ss_pred chhheecchh
Confidence 9888876554
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=415.31 Aligned_cols=397 Identities=19% Similarity=0.213 Sum_probs=289.1
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHh-hccCCeEEEEeccCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLL-EPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~-~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
+.+++++|++||||||||+++.+++++.... +++++|++|+|++|.|+++++...+ ...|..|+..++.. ......
T Consensus 17 l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~--~~~~~~ 93 (812)
T PRK11664 17 LKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE--SKVGPN 93 (812)
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc--cccCCC
Confidence 6678999999999999999999999976443 4589999999999999999986543 44677776555533 223456
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
++|+|+|++++..++. ....++++++|||||+|+ |+...+.++..++.+... .
T Consensus 94 t~I~v~T~G~Llr~l~---~d~~L~~v~~IIlDEaHE-----R~l~~Dl~L~ll~~i~~~-------------------l 146 (812)
T PRK11664 94 TRLEVVTEGILTRMIQ---RDPELSGVGLVILDEFHE-----RSLQADLALALLLDVQQG-------------------L 146 (812)
T ss_pred CcEEEEChhHHHHHHh---hCCCcCcCcEEEEcCCCc-----cccccchHHHHHHHHHHh-------------------C
Confidence 7899999999776654 456899999999999998 322223333322222110 1
Q ss_pred CCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEV 775 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~ 775 (2191)
++++|+|+||||++. ..+.++++ +..+....+..|++.++..... . .. ..+.+...+...
T Consensus 147 r~~lqlilmSATl~~-~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~----~-~~-------------~~~~v~~~l~~~ 207 (812)
T PRK11664 147 RDDLKLLIMSATLDN-DRLQQLLPDAPVIVSEGRSFPVERRYQPLPA----H-QR-------------FDEAVARATAEL 207 (812)
T ss_pred CccceEEEEecCCCH-HHHHHhcCCCCEEEecCccccceEEeccCch----h-hh-------------HHHHHHHHHHHH
Confidence 357899999999964 56778775 3444455566666554321110 0 00 011122223333
Q ss_pred Hh-cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 776 VQ-EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 776 ~~-~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
+. ..+++|||||++.+++.++..|.+.+.. ...|..+||+|+
T Consensus 208 l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~-------------------------------------~~~v~~Lhg~l~ 250 (812)
T PRK11664 208 LRQESGSLLLFLPGVGEIQRVQEQLASRVAS-------------------------------------DVLLCPLYGALS 250 (812)
T ss_pred HHhCCCCEEEEcCCHHHHHHHHHHHHHhccC-------------------------------------CceEEEeeCCCC
Confidence 33 3689999999999999999888653210 112888999999
Q ss_pred HHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCC--------------CcccCcccccccccccCCCCCC
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG--------------RDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g--------------~~~is~~~y~QmiGRAGR~G~d 920 (2191)
.++|..++..|++|..+|||||+++++|||||++++|||++... ..++|.++|.||+|||||.+
T Consensus 251 ~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~-- 328 (812)
T PRK11664 251 LAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE-- 328 (812)
T ss_pred HHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC--
Confidence 99999999999999999999999999999999999999965432 13578889999999999997
Q ss_pred CceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHH
Q 000107 921 TKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSA 1000 (2191)
Q Consensus 921 ~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~ 1000 (2191)
.|.||.++++.++.. +.....|.|..+ ++..++|++.+-|+. ++. ...|+.++.+ .++
T Consensus 329 -~G~cyrL~t~~~~~~---l~~~~~PEI~r~------dL~~~~L~l~~~g~~----~~~---~~~~ld~P~~-----~~~ 386 (812)
T PRK11664 329 -PGICLHLYSKEQAER---AAAQSEPEILHS------DLSGLLLELLQWGCH----DPA---QLSWLDQPPA-----AAL 386 (812)
T ss_pred -CcEEEEecCHHHHhh---CccCCCCceecc------chHHHHHHHHHcCCC----CHH---hCCCCCCCCH-----HHH
Confidence 999999999987654 444455655433 567788998888742 222 2356665543 678
Q ss_pred HHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 1001 QDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 1001 ~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
+.|+..|...|+++ +++ .+|++|+.++..+++|..|++++..-+
T Consensus 387 ~~A~~~L~~lgald--~~g---~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 387 AAAKRLLQQLGALD--GQG---RLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred HHHHHHHHHCCCCC--CCC---CcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 89999999999995 222 699999999999999999999888643
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=367.43 Aligned_cols=356 Identities=20% Similarity=0.262 Sum_probs=267.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CC--EEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GK--MALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~--kaL~I~P~ra 581 (2191)
|.+.+++.+...||..+||+|..+||. ++.++++++-|+||||||++|++||++.+.++ ++ .+|||.|||+
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPl--ll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPL--LLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHH--HhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 678999999999999999999999987 99999999999999999999999999988542 22 6899999999
Q ss_pred HHHHHHHHHHHHhhc-cCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 582 ICAEKAEHLEVLLEP-LGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~-lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
||.|+.+.+..+... .++.+..+.|+..... ...++.|+||||+++.+++.+-.....+..+.++|+||||.+.
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 999999999888777 5677888889864321 2356889999999999999874455557799999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceE
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEE 735 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e 735 (2191)
|.++...+..||+.| +...+.=++|||... .+.+...+.+-. |+.+
T Consensus 171 dmgFe~~~n~ILs~L--------------------------PKQRRTGLFSATq~~--~v~dL~raGLRN----pv~V-- 216 (567)
T KOG0345|consen 171 DMGFEASVNTILSFL--------------------------PKQRRTGLFSATQTQ--EVEDLARAGLRN----PVRV-- 216 (567)
T ss_pred cccHHHHHHHHHHhc--------------------------ccccccccccchhhH--HHHHHHHhhccC----ceee--
Confidence 999999999999988 456778899999763 333333333211 2221
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCC---ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~---d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
.+......... .-+ ...+.... ....+++++.. ...+++|||.+|...++.....+...+..
T Consensus 217 ~V~~k~~~~tP--S~L----~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~------- 281 (567)
T KOG0345|consen 217 SVKEKSKSATP--SSL----ALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKK------- 281 (567)
T ss_pred eecccccccCc--hhh----cceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCC-------
Confidence 11111000000 000 00000011 11233333333 13479999999999888877777654321
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
..+..+||.|.+..|..+++.|+.-.-.||+||+++++|+|||++.+||
T Consensus 282 -------------------------------~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv 330 (567)
T KOG0345|consen 282 -------------------------------REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV 330 (567)
T ss_pred -------------------------------CcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE
Confidence 2277799999999999999999998889999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccC-CCCcccccc
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES-CPPLHSCLS 953 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~-l~~l~S~L~ 953 (2191)
.++.|. +...|.||+||+||.| ..|.+++|..+.+.. |.+++.-. .+++++...
T Consensus 331 Q~DpP~----~~~~FvHR~GRTaR~g--r~G~Aivfl~p~E~a-YveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 331 QFDPPK----DPSSFVHRCGRTARAG--REGNAIVFLNPREEA-YVEFLRIKGKVELERIDT 385 (567)
T ss_pred ecCCCC----ChhHHHhhcchhhhcc--CccceEEEecccHHH-HHHHHHhcCccchhhhcc
Confidence 887765 7788999999999999 899999999985543 44555433 345544433
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=409.45 Aligned_cols=395 Identities=19% Similarity=0.233 Sum_probs=286.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHh-hccCCeEEEEeccCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLL-EPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~-~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
+..++++|++||||||||+++.+++++... .+.+++|+.|+|++|.++++++.+.+ ..+|..|+..++.. .....+
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~--~~~s~~ 90 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE--NKVSRR 90 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--cccCCC
Confidence 667899999999999999999999998764 45699999999999999999986444 44566666544432 234556
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc-ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM-VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~-l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~ 695 (2191)
++|+|+|++++..++. ....++++++|||||+|+ ..+..++.. ++..+...
T Consensus 91 t~I~v~T~G~Llr~l~---~d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i~~~---------------------- 142 (819)
T TIGR01970 91 TRLEVVTEGILTRMIQ---DDPELDGVGALIFDEFHERSLDADLGLA---LALDVQSS---------------------- 142 (819)
T ss_pred CcEEEECCcHHHHHHh---hCcccccCCEEEEeccchhhhccchHHH---HHHHHHHh----------------------
Confidence 8999999999766554 456799999999999996 444323221 11122111
Q ss_pred CCCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH
Q 000107 696 PAHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE 774 (2191)
Q Consensus 696 ~~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e 774 (2191)
.+++.|+|+||||+++ ..+.++++ +.++....+..|++.++.... ..... .+.+...+..
T Consensus 143 lr~dlqlIlmSATl~~-~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~----~~~~~--------------~~~v~~~l~~ 203 (819)
T TIGR01970 143 LREDLKILAMSATLDG-ERLSSLLPDAPVVESEGRSFPVEIRYLPLR----GDQRL--------------EDAVSRAVEH 203 (819)
T ss_pred cCCCceEEEEeCCCCH-HHHHHHcCCCcEEEecCcceeeeeEEeecc----hhhhH--------------HHHHHHHHHH
Confidence 1356899999999964 45778875 444555556666655432110 00000 0111122222
Q ss_pred HHh-cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCC
Q 000107 775 VVQ-EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGL 853 (2191)
Q Consensus 775 ~~~-~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagL 853 (2191)
.+. ..+++|||||++.+++.++..|.+.+. -...|..+||+|
T Consensus 204 ~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~-------------------------------------~~~~v~pLHg~L 246 (819)
T TIGR01970 204 ALASETGSILVFLPGQAEIRRVQEQLAERLD-------------------------------------SDVLICPLYGEL 246 (819)
T ss_pred HHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-------------------------------------CCcEEEEecCCC
Confidence 222 357999999999999999888865321 012388999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCC--------------CcccCcccccccccccCCCCC
Q 000107 854 TVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG--------------RDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 854 s~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g--------------~~~is~~~y~QmiGRAGR~G~ 919 (2191)
++++|..+++.|++|..+|||||+++++|||||++++|||++... ..++|.++|.||+|||||.+
T Consensus 247 ~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~- 325 (819)
T TIGR01970 247 SLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE- 325 (819)
T ss_pred CHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC-
Confidence 999999999999999999999999999999999999999976532 13577888999999999996
Q ss_pred CCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHH
Q 000107 920 DTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKS 999 (2191)
Q Consensus 920 d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~ 999 (2191)
+|.||.+++.+++..+.. ...|.|..+ .+...+|++.+-|+- ++. ...|+.++. ..+
T Consensus 326 --~G~cyrL~t~~~~~~l~~---~~~PEI~r~------~L~~~~L~l~~~g~~----~~~---~~~~l~~P~-----~~~ 382 (819)
T TIGR01970 326 --PGVCYRLWSEEQHQRLPA---QDEPEILQA------DLSGLALELAQWGAK----DPS---DLRWLDAPP-----SVA 382 (819)
T ss_pred --CCEEEEeCCHHHHHhhhc---CCCcceecc------CcHHHHHHHHHcCCC----Chh---hCCCCCCcC-----HHH
Confidence 999999999987655433 334555332 456678888887742 222 234555543 256
Q ss_pred HHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHH
Q 000107 1000 AQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048 (2191)
Q Consensus 1000 ~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L 1048 (2191)
++.|++.|...|++. +++ .+|++|+.++..+++|..|++++...
T Consensus 383 i~~a~~~L~~lgald--~~~---~lT~~G~~~~~lp~~p~l~~~ll~~~ 426 (819)
T TIGR01970 383 LAAARQLLQRLGALD--AQG---RLTAHGKAMAALGCHPRLAAMLLSAH 426 (819)
T ss_pred HHHHHHHHHHCCCCC--CCC---CcCHHHHHHHhcCCCHHHHHHHHHhh
Confidence 788999999999995 232 59999999999999999999988764
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=358.46 Aligned_cols=345 Identities=23% Similarity=0.309 Sum_probs=275.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|-.+++..+.+.||++|.|+|.++|+. .+.|+|++.-|..|+|||.+|.+|+|+.+... ...+++++|+|+||-|.
T Consensus 92 Lkr~LLmgIfe~G~ekPSPiQeesIPi--aLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQt 169 (459)
T KOG0326|consen 92 LKRELLMGIFEKGFEKPSPIQEESIPI--ALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQT 169 (459)
T ss_pred hhHHHHHHHHHhccCCCCCccccccce--eecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHH
Confidence 678888888899999999999999987 89999999999999999999999999987643 34789999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
.+.+.++.+.+|++|...+|++.... +....+++|+||+++.+|..+ .-..+++..++|+||++.+.+..++..
T Consensus 170 Sqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~F~~~ 247 (459)
T KOG0326|consen 170 SQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVDFQPI 247 (459)
T ss_pred HHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchhhhhH
Confidence 99999999999999999999875432 456689999999999999887 566899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc---c----ccccccceE
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE---T----NFRPVPLEE 735 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~---~----~~RpvpL~e 735 (2191)
+|.++..| ++..|++++|||.|. .+..|+...+-. . ...+..+..
T Consensus 248 ~e~li~~l--------------------------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQ 299 (459)
T KOG0326|consen 248 VEKLISFL--------------------------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQ 299 (459)
T ss_pred HHHHHHhC--------------------------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhh
Confidence 99999887 567899999999985 334444332211 0 001111111
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhH-HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDH-IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~-l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
|+.+ ......-+ +..|... ++ -.++||||||.+.+|.+|+.|.+
T Consensus 300 yYaf--------------------V~e~qKvhCLntLfsk-Lq-INQsIIFCNS~~rVELLAkKITe------------- 344 (459)
T KOG0326|consen 300 YYAF--------------------VEERQKVHCLNTLFSK-LQ-INQSIIFCNSTNRVELLAKKITE------------- 344 (459)
T ss_pred heee--------------------echhhhhhhHHHHHHH-hc-ccceEEEeccchHhHHHHHHHHh-------------
Confidence 1110 00000111 1222222 22 25899999999999999998865
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
+++.+.|.|+.|.+++|..|+..|++|..+.||||+.+.+|||++++.|||++
T Consensus 345 ---------------------------lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326|consen 345 ---------------------------LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred ---------------------------ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEec
Confidence 34457889999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh---HHHHHhhhccCCCCcccccc
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE---VKKIMGLLNESCPPLHSCLS 953 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e---~~~~~~ll~~~l~~l~S~L~ 953 (2191)
+.+. +.++|+||+||+||.| ..|.+|-+.+-++ ...+.+-|...+.|+.+.+.
T Consensus 398 Dfpk----~aEtYLHRIGRsGRFG--hlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 398 DFPK----NAETYLHRIGRSGRFG--HLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CCCC----CHHHHHHHccCCccCC--CcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 8876 7889999999999999 8999998887654 34455667777777766543
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=349.32 Aligned_cols=341 Identities=19% Similarity=0.292 Sum_probs=271.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|.++++......||++|..+|..|++. ++.|+|+|..|..|+|||..|-+.+++.+.- +..+++++.|||+||.|+
T Consensus 34 l~edlLrgiY~yGfekPS~IQqrAi~~--IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi 111 (400)
T KOG0328|consen 34 LKEDLLRGIYAYGFEKPSAIQQRAIPQ--ILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQI 111 (400)
T ss_pred chHHHHHHHHHhccCCchHHHhhhhhh--hhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHH
Confidence 558888888899999999999999987 9999999999999999999998888876543 345899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
.+.+..+...+++.+....|+...+ .+.-+.+++.+||+++.+++++ ....-+.+.++|+||++.+.+.+++..
T Consensus 112 ~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaDemL~kgfk~Q 189 (400)
T KOG0328|consen 112 QKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEADEMLNKGFKEQ 189 (400)
T ss_pred HHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccHHHHHHhhHHHH
Confidence 9999999999999999888887632 2445789999999999999987 566778899999999999999888877
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccc
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~ 742 (2191)
+..+...| ++..|+|++|||+|. ++.+... .|-+-|++.+++.+..
T Consensus 190 iydiyr~l--------------------------p~~~Qvv~~SATlp~--eilemt~------kfmtdpvrilvkrdel 235 (400)
T KOG0328|consen 190 IYDIYRYL--------------------------PPGAQVVLVSATLPH--EILEMTE------KFMTDPVRILVKRDEL 235 (400)
T ss_pred HHHHHHhC--------------------------CCCceEEEEeccCcH--HHHHHHH------HhcCCceeEEEecCCC
Confidence 77666554 578999999999983 3333221 2334466666553322
Q ss_pred cccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 743 ~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
. .+-+..+.-..+....+.+.+..|-..+. -.+++|||||++.+.++.+.+.+.
T Consensus 236 t----lEgIKqf~v~ve~EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~-------------------- 289 (400)
T KOG0328|consen 236 T----LEGIKQFFVAVEKEEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREA-------------------- 289 (400)
T ss_pred c----hhhhhhheeeechhhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhh--------------------
Confidence 1 11122222222222335566665543332 258999999999988887776542
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCccc
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFI 902 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~i 902 (2191)
.+-|...||+|.++||+.+...||+|.-+||++|++.++|+|+|.+..||+++.|.
T Consensus 290 --------------------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~---- 345 (400)
T KOG0328|consen 290 --------------------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN---- 345 (400)
T ss_pred --------------------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc----
Confidence 12388899999999999999999999999999999999999999999999999876
Q ss_pred CcccccccccccCCCCCCCceEEEEEeChhhHHHHHh
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ 939 (2191)
....|+||+||.||.| +.|.+|-|++.++.+.+.+
T Consensus 346 nre~YIHRIGRSGRFG--RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFG--RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred cHHHHhhhhccccccC--CcceEEEEecHHHHHHHHH
Confidence 5678999999999999 8999999999988766543
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=405.38 Aligned_cols=523 Identities=20% Similarity=0.283 Sum_probs=389.8
Q ss_pred cccchhhhhccccCCCCCccceeccCCC-CcccccccCCCCCCccCCCCCCCCCCCcCCcCCCCcH------HHHHHHHH
Q 000107 447 EKDSVLIVHERKLDISSQGIDSITSDSP-TNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPS------EICSIYKK 519 (2191)
Q Consensus 447 d~e~~~~~~~~e~~~~~~y~i~v~Sd~w-~~e~~~pi~~~~~~e~~~P~~~~~~~e~l~L~~~Lp~------~l~~~l~~ 519 (2191)
+..--++++..+ .+++|||+++||+| ++++..|++|++ .++|.+++++++.+|+++. |- .....
T Consensus 1070 ~~~v~ft~~~~~--~pP~~fi~lvSd~wl~s~~~~Pvsfr~---l~lpek~p~pt~lld~~~~-~~~~l~N~~~~~l--- 1140 (1674)
T KOG0951|consen 1070 EHTVNFTVPLFE--PPPQYFIRLVSDRWLHSETVLPVSFRH---LILPEKYPPPTELLDLQPL-PVSALRNPSFETL--- 1140 (1674)
T ss_pred ceEEEEEeecCC--CCCceEEEEeeccccCCCcccccchhh---ccCcccCCCCchhhhcccc-chhccCCcchhhh---
Confidence 443334444444 48999999999999 999999999998 9999999999999999873 32 11222
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhc-cC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LG 598 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~-lg 598 (2191)
|...+|+|.++++. ....++|+++++|+|||||.|+++++++ -....+++||.|.-+++..++..|.+.+.. .|
T Consensus 1141 --f~~~n~iqtqVf~~-~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1141 --FQDFNPIQTQVFTS-LYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred --ccccCCceEEEEee-eecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 33458999999985 2446899999999999999999999998 335669999999999999999999766654 67
Q ss_pred CeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 599 RHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
..+..+.|....+. +....+|+|+|||+|+.+ + ..+.+++.|+||+|++++ ..|+.+|.+++ +||++.+
T Consensus 1216 ~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg-~~g~v~evi~S-~r~ia~q- 1285 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGG-VYGAVYEVICS-MRYIASQ- 1285 (1674)
T ss_pred ceEEecCCccccchHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcc-cCCceEEEEee-HHHHHHH-
Confidence 88888877765432 334569999999999876 2 678899999999999995 48999999999 9999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc-----ccccccccccceEEEEeccccccchhhHHH
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA-----LYETNFRPVPLEEYIKVGNAIYSKKMDVVR 752 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~-----l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r 752 (2191)
..+++++|++|..+.|+.++ +++. -|.++.||+|++.+++.-...+..... .
T Consensus 1286 ------------------~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~--~ 1342 (1674)
T KOG0951|consen 1286 ------------------LEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRM--L 1342 (1674)
T ss_pred ------------------HHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHH--H
Confidence 45789999999999999988 5532 357899999999999854443322110 0
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCC
Q 000107 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA 832 (2191)
Q Consensus 753 ~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 832 (2191)
.+. +.....+.....++++.+||+|+|+.|..+|..+..+..... ..-+. .++ .
T Consensus 1343 am~----------~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~---------~~~l~---~~~----e 1396 (1674)
T KOG0951|consen 1343 AMT----------KPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADE---------PDYLL---SEL----E 1396 (1674)
T ss_pred Hhh----------hhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCc---------HHHHH---HHH----h
Confidence 111 112223333445678999999999999999988876553321 00011 111 1
Q ss_pred CCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC--C----CcccCccc
Q 000107 833 GLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI--G----RDFIDGTR 906 (2191)
Q Consensus 833 gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~--g----~~~is~~~ 906 (2191)
+-|..|.+.+++||+ |.||+..+..+|-..|..|.|.|+|...- .+|+-..+.-||+..... | ...+++..
T Consensus 1397 ~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ 1473 (1674)
T KOG0951|consen 1397 ECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAE 1473 (1674)
T ss_pred cchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhH
Confidence 247788999999999 99999999999999999999999999988 999999998888742211 1 13467778
Q ss_pred ccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhh
Q 000107 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986 (2191)
Q Consensus 907 y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tl 986 (2191)
..||+|+|.|+ |.|+++|......+|++++.+++| ++|.|.- -+.+...+.|..+
T Consensus 1474 ll~m~G~a~~~-----~k~vi~~~~~~k~yykkfl~e~lP-ves~lq~---~lhd~~n~ei~~~---------------- 1528 (1674)
T KOG0951|consen 1474 LLQMVGLASGA-----GKCVIMCHTPKKEYYKKFLYEPLP-VESHLQH---CLHDNFNAEIVTK---------------- 1528 (1674)
T ss_pred HHHHhhhhcCC-----ccEEEEecCchHHHHHHhccCcCc-hHHHHHH---HHHhhhhHHHHHH----------------
Confidence 89999999884 589999999999999999999995 4554421 0111111222221
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHccccee-ccCCCcc---CCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccc
Q 000107 987 LNSTKPFQDVVKSAQDSLRWLCHRKFLEW-NEDTKLY---STTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLH 1062 (2191)
Q Consensus 987 l~~~~~~~~~~~~~~~al~~L~~~~~i~~-~~~~~~~---~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlh 1062 (2191)
++++.|+|++||+|..+++. ..|+++| .+|+.+.+++.|+|... ++.+|..+++--|...|-
T Consensus 1529 ---------tienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet----~l~dl~~s~~i~v~dad~- 1594 (1674)
T KOG0951|consen 1529 ---------TIENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVET----TLNDLEESKCIEVDDEDD- 1594 (1674)
T ss_pred ---------HHHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHH----HHHHhhcCceEEeecccc-
Confidence 36788999999999999985 5677777 78999999999998877 889998888733332222
Q ss_pred eeeeeccCCCCCCCcHHHHHHHHHhhhhhhhh
Q 000107 1063 LVYLSTPINVEVEPDWELYYERFLELSALDQS 1094 (2191)
Q Consensus 1063 llylvtp~~~~~~~dw~~~~~~~~~l~~~~~~ 1094 (2191)
.+++++. +|+.-|.+++.+--+
T Consensus 1595 --------~l~~Ias--~y~i~y~ti~~f~~~ 1616 (1674)
T KOG0951|consen 1595 --------SLGMIAS--YYYISYITIERFSSS 1616 (1674)
T ss_pred --------ccchhhh--hceeeeEeeehhhhh
Confidence 1333444 555666666555433
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=359.74 Aligned_cols=350 Identities=23% Similarity=0.322 Sum_probs=270.0
Q ss_pred CCCCCcCCcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEE
Q 000107 497 GMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMAL 574 (2191)
Q Consensus 497 ~~~~e~l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL 574 (2191)
..++..|++++| +.+-++.+|+.+++|+|..||+. |++|+|+|-+|.||||||++|.+|+|+++.. .|.-++
T Consensus 6 ~~~F~~LGl~~W----lve~l~~l~i~~pTpiQ~~cIpk--ILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFal 79 (442)
T KOG0340|consen 6 AKPFSILGLSPW----LVEQLKALGIKKPTPIQQACIPK--ILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFAL 79 (442)
T ss_pred cCchhhcCccHH----HHHHHHHhcCCCCCchHhhhhHH--HhcccccccccccCCCcchhhhHHHHHhhccCCCcceEE
Confidence 345566777766 45667788999999999999987 9999999999999999999999999999876 356899
Q ss_pred EEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhc--CCCCccceEEE
Q 000107 575 LVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEE--GRLSEIGIIVI 648 (2191)
Q Consensus 575 ~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~--~~L~~l~lVVI 648 (2191)
|+.|||+||.|+.+.|..+...+++++..++|+... ..++..+|++|+|||++..++..-... ..++++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 999999999999999999999999999999998753 346778999999999998887652111 24788999999
Q ss_pred cccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccccccc
Q 000107 649 DELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNF 728 (2191)
Q Consensus 649 DEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~ 728 (2191)
||++.+.+..+...++-+...+ +...|.++||||+.+ .+....++..-.+
T Consensus 160 DEADrvL~~~f~d~L~~i~e~l--------------------------P~~RQtLlfSATitd--~i~ql~~~~i~k~-- 209 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECL--------------------------PKPRQTLLFSATITD--TIKQLFGCPITKS-- 209 (442)
T ss_pred cchhhhhccchhhHHhhhhccC--------------------------CCccceEEEEeehhh--HHHHhhcCCcccc--
Confidence 9999999988888888777655 455799999999974 3344444321110
Q ss_pred ccccceEEEEeccccccchhhHHHHHHHhhccC--CCChhHHHHHHHHHHh-cCCcEEEEeCchhHHHHHHHHHHHHHhh
Q 000107 729 RPVPLEEYIKVGNAIYSKKMDVVRTILTAANLG--GKDPDHIVELCDEVVQ-EGHSVLIFCSSRKGCESTARHVSKFLKK 805 (2191)
Q Consensus 729 RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~--~~d~d~l~~Ll~e~~~-~g~~vLVF~~Sr~~~e~lA~~L~~~l~~ 805 (2191)
...+.... .+. .....+....-.. ....-.++.++...-. +.++++||+++...|+.++..|..
T Consensus 210 --~a~~~e~~-~~v------stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~---- 276 (442)
T KOG0340|consen 210 --IAFELEVI-DGV------STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN---- 276 (442)
T ss_pred --cceEEecc-CCC------CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh----
Confidence 11000000 000 0111111111000 0112244555554433 468999999999999988877743
Q ss_pred cccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 000107 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNL 885 (2191)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNL 885 (2191)
+...+..+|+-|++.+|-..+.+|+++.++|||||+++++|+||
T Consensus 277 ------------------------------------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 277 ------------------------------------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred ------------------------------------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 11237889999999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 886 PARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 886 Pav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|.+..||++..+. ++.+|+||+||+.|+| ..|.++-|+++.+++.+
T Consensus 321 P~V~LVvN~diPr----~P~~yiHRvGRtARAG--R~G~aiSivt~rDv~l~ 366 (442)
T KOG0340|consen 321 PTVELVVNHDIPR----DPKDYIHRVGRTARAG--RKGMAISIVTQRDVELL 366 (442)
T ss_pred CceeEEEecCCCC----CHHHHHHhhcchhccc--CCcceEEEechhhHHHH
Confidence 9999999988776 8899999999999999 89999999998776643
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=402.87 Aligned_cols=332 Identities=20% Similarity=0.261 Sum_probs=242.9
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
..+...+++ +|+..|+|+|.++|+. ++.|+|+|+++|||+|||++|.+|+|. .++.+|||+|+++|+.++...
T Consensus 446 ~~L~~~lk~~FG~~sFRp~Q~eaI~a--iL~GrDVLVimPTGSGKSLcYQLPAL~----~~GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 446 KKLEVNNKKVFGNHSFRPNQREIINA--TMSGYDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCccHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHHHH
Confidence 345455544 7999999999999987 899999999999999999999999985 367899999999999977766
Q ss_pred HHHHhhccCCeEEEEeccCCCCC----------CCCCCceEEEchHHHH---HHHHHhhhcCCCCccceEEEcccccccc
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGGS----------LPKDTSVAVCTIEKAN---SLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~~----------l~~~~~IiV~TpEkl~---~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+.. .|+.+..+.|+..... .....+|+|+|||++. .+++.+........+.+|||||+|++.+
T Consensus 520 L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 520 LLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred HHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh
Confidence 544 4788877777653211 1145799999999985 2344332222345589999999999999
Q ss_pred cc--hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccccc
Q 000107 657 QN--RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETNFR 729 (2191)
Q Consensus 657 ~~--RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~~R 729 (2191)
|+ +.+.+.. |..++.. .+.+++++||||++. .+++.+.|+.. ++...+.
T Consensus 596 WGhDFRpdYr~-L~~Lr~~-----------------------fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~ 651 (1195)
T PLN03137 596 WGHDFRPDYQG-LGILKQK-----------------------FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN 651 (1195)
T ss_pred cccchHHHHHH-HHHHHHh-----------------------CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC
Confidence 86 3344433 2223221 246789999999874 44566666532 2222222
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
...+...+. . ... .....+..++... ..+.++||||.|++.|+.++..|...
T Consensus 652 RpNL~y~Vv-~-----k~k--------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~------- 703 (1195)
T PLN03137 652 RPNLWYSVV-P-----KTK--------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEF------- 703 (1195)
T ss_pred ccceEEEEe-c-----cch--------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHC-------
Confidence 111211111 0 000 0011223333221 12468999999999999999887531
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
+..+.+|||||++++|..+++.|+.|.++|||||+++++|||+|+++
T Consensus 704 ---------------------------------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR 750 (1195)
T PLN03137 704 ---------------------------------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 750 (1195)
T ss_pred ---------------------------------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCc
Confidence 12388999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
+||++..+. +...|+||+|||||.| ..|.|++++...++..+..++..
T Consensus 751 ~VIHydlPk----SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 751 FVIHHSLPK----SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred EEEEcCCCC----CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhc
Confidence 999988876 8899999999999999 78999999999888877777754
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=368.16 Aligned_cols=394 Identities=20% Similarity=0.267 Sum_probs=273.1
Q ss_pred CcHHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchh
Q 000107 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPY 579 (2191)
Q Consensus 509 Lp~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~ 579 (2191)
|.+.+...+.. ++|..|+.+|.+|||. +++|++++|-++||||||++|++|+++.+.. .|.-+|||+||
T Consensus 143 L~~~lv~~L~~~m~i~~pTsVQkq~IP~--lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPT 220 (708)
T KOG0348|consen 143 LHPHLVSHLNTKMKISAPTSVQKQAIPV--LLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPT 220 (708)
T ss_pred CCHHHHHHHHHHhccCccchHhhcchhh--hhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEech
Confidence 44566666654 7999999999999987 9999999999999999999999999999874 47789999999
Q ss_pred HHHHHHHHHHHHHHhhccCCeEE-EEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 580 VSICAEKAEHLEVLLEPLGRHVR-SYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~lg~~V~-~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
|+||.|+|+.+++++.++.+-|- .++|+.... .+.++.+|+|+||+++.+.+.+- ....++.+.+||+||+|.|
T Consensus 221 REL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT-~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 221 RELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT-KSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred HHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc-chheeeeeeEEEecchhHH
Confidence 99999999999999998776653 456765432 36788999999999988887652 4446788999999999999
Q ss_pred cccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhh-cccccc-c---c
Q 000107 655 ADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQ-AALYET-N---F 728 (2191)
Q Consensus 655 ~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~-a~l~~~-~---~ 728 (2191)
.|.+++..+..||..+-.... ........++..|-+++||||.+ +..+++.-- ..++.. + .
T Consensus 300 leLGfekdit~Il~~v~~~~~-------------~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 300 LELGFEKDITQILKAVHSIQN-------------AECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred HhccchhhHHHHHHHHhhccc-------------hhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 999999999999988843211 01112224456889999999985 555554321 111110 0 0
Q ss_pred ccccce---EEEE---eccccccchhhHHHHHHHhhcc--CCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHH
Q 000107 729 RPVPLE---EYIK---VGNAIYSKKMDVVRTILTAANL--GGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 729 RpvpL~---e~i~---~~~~~~~~~~~~~r~l~~~~~~--~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
-..|-. ..+. .++.+ . ....-..+...+.. ..-..-.+..++...++ ...++|||.++.+.++.-...
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l-~-~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~l 444 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKL-D-SFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSL 444 (708)
T ss_pred hcCcchhhhhhcCCccccccc-c-cccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHH
Confidence 000000 0000 00000 0 00000011111100 00111123333333332 345899999999999988888
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
+...+.......... ....|+-+.+ +...+.-+||+|++++|..+++.|+...-.||+||++
T Consensus 445 f~~~l~~~~e~~s~~---------------~~s~g~~~l~---~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDV 506 (708)
T KOG0348|consen 445 FSEALLSHLEGSSGA---------------PDSEGLPPLF---MDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDV 506 (708)
T ss_pred HHhhhhcccccccCC---------------cccCCChhhh---hcceEEEecCchhHHHHHHHHHhhccccceEEEehhh
Confidence 776654320000000 0011111111 1223778999999999999999999998899999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCC
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESC 945 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l 945 (2191)
++||+|+|.++.||.|+.+. +..+|+||+||+.|.| ..|++++|..|.|.+ |.+++....
T Consensus 507 AaRGLDlP~V~~vVQYd~P~----s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~~~ 566 (708)
T KOG0348|consen 507 AARGLDLPHVGLVVQYDPPF----STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKKHH 566 (708)
T ss_pred hhccCCCCCcCeEEEeCCCC----CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHhhc
Confidence 99999999999999887776 8999999999999999 899999999998877 566665443
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=367.75 Aligned_cols=342 Identities=17% Similarity=0.205 Sum_probs=265.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYVSI 582 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~raL 582 (2191)
|++....+++++||+.|+++|...|+. ++.|+++++.|.||+|||++|++|+++.+.. .+..+|||+|||+|
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~p--ll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPP--LLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTREL 166 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCc--cCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHH
Confidence 668889999999999999999999987 9999999999999999999999999998875 35589999999999
Q ss_pred HHHHHHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 583 CAEKAEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 583 A~q~~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
|.|++.++++++... ++.|..+.|+.... .+.++++|+|+||+++.+++.+- .......+.++|+||+|++.|.
T Consensus 167 A~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt-~~f~~r~~k~lvlDEADrlLd~ 245 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT-SGFLFRNLKCLVLDEADRLLDI 245 (543)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC-CcchhhccceeEeecchhhhhc
Confidence 999999999998877 88899999987542 34568999999999999988762 2234667899999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEE
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEY 736 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~ 736 (2191)
+|...++.|+..+ +...|..++|||++. +++++...-.. +|+ +
T Consensus 246 GF~~di~~Ii~~l--------------------------pk~rqt~LFSAT~~~kV~~l~~~~L~~------d~~----~ 289 (543)
T KOG0342|consen 246 GFEEDVEQIIKIL--------------------------PKQRQTLLFSATQPSKVKDLARGALKR------DPV----F 289 (543)
T ss_pred ccHHHHHHHHHhc--------------------------cccceeeEeeCCCcHHHHHHHHHhhcC------Cce----E
Confidence 9999999998877 457899999999884 66665543211 111 1
Q ss_pred EEeccccccchhhHHHHHHHhhccCC--CChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 737 IKVGNAIYSKKMDVVRTILTAANLGG--KDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 737 i~~~~~~~~~~~~~~r~l~~~~~~~~--~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
+.+...- .......+.+..-... .....+..++.+... ..++||||+|...+..++..|..
T Consensus 290 v~~~d~~---~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~------------- 352 (543)
T KOG0342|consen 290 VNVDDGG---ERETHERLEQGYVVAPSDSRFSLLYTFLKKNIK-RYKIIVFFSTCMSVKFHAELLNY------------- 352 (543)
T ss_pred eecCCCC---CcchhhcccceEEeccccchHHHHHHHHHHhcC-CceEEEEechhhHHHHHHHHHhh-------------
Confidence 1111000 0000000111000001 112233444444332 27999999999988877776642
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
+...|.-+||++++..|..+...|+...--|||||+++|||+|+|++..||.+
T Consensus 353 ---------------------------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~ 405 (543)
T KOG0342|consen 353 ---------------------------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQY 405 (543)
T ss_pred ---------------------------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEe
Confidence 11125668999999999999999999999999999999999999999999988
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHh
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ 939 (2191)
+.+. +..+|+||+||+||.| ..|+++++..+.|...+..
T Consensus 406 ~~P~----d~~~YIHRvGRTaR~g--k~G~alL~l~p~El~Flr~ 444 (543)
T KOG0342|consen 406 DPPS----DPEQYIHRVGRTAREG--KEGKALLLLAPWELGFLRY 444 (543)
T ss_pred CCCC----CHHHHHHHhccccccC--CCceEEEEeChhHHHHHHH
Confidence 8776 8899999999999998 8999999999988665443
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=389.54 Aligned_cols=321 Identities=23% Similarity=0.345 Sum_probs=237.9
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
.+||+.|+|+|.++|+. ++.|+++++++|||+|||++|.+|++. .++.+|||+|+++|+.|++..+.. +|
T Consensus 6 ~~g~~~~r~~Q~~ai~~--~l~g~dvlv~apTGsGKTl~y~lp~l~----~~~~~lVi~P~~~L~~dq~~~l~~----~g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINA--VLLGRDCFVVMPTGGGKSLCYQLPALC----SDGITLVISPLISLMEDQVLQLKA----SG 75 (470)
T ss_pred hcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCCcHhHHHHHHHHH----cCCcEEEEecHHHHHHHHHHHHHH----cC
Confidence 37999999999999987 899999999999999999999999875 467899999999999999888764 47
Q ss_pred CeEEEEeccCCCC--------CCCCCCceEEEchHHHHH---HHHHhhhcCCCCccceEEEcccccccccchh--HHHHH
Q 000107 599 RHVRSYYGNQGGG--------SLPKDTSVAVCTIEKANS---LVNRMLEEGRLSEIGIIVIDELHMVADQNRG--YLLEL 665 (2191)
Q Consensus 599 ~~V~~~~G~~~~~--------~l~~~~~IiV~TpEkl~~---Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG--~~lE~ 665 (2191)
+.+..+.|+.... ......+|+++|||++.. ++..+ . ...++++|||||+|++++++.. ..+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l-~--~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTL-E--ERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHH-H--hcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 7777666654321 022357899999999753 22221 1 5678999999999999987532 23322
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccccccccceEEEEec
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~~RpvpL~e~i~~~ 740 (2191)
+ ..++.. .+++|+++||||+++ ..++.++++.. ++...+....+...+.
T Consensus 153 l-~~l~~~-----------------------~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~-- 206 (470)
T TIGR00614 153 L-GSLKQK-----------------------FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVR-- 206 (470)
T ss_pred H-HHHHHH-----------------------cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEE--
Confidence 2 223221 256789999999875 35677776532 2222221111111110
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhh
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~ 820 (2191)
.. . ....+.+..++.. ...+.++||||+|++.|+.++..|.+.
T Consensus 207 ~~----~--------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~------------------ 249 (470)
T TIGR00614 207 RK----T--------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNL------------------ 249 (470)
T ss_pred eC----C--------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhc------------------
Confidence 00 0 0011122333322 124567799999999999999887531
Q ss_pred HHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCc
Q 000107 821 TSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRD 900 (2191)
Q Consensus 821 ~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~ 900 (2191)
...++.+||+|++++|..+++.|++|.++|||||+++++|||+|++++||++..+.
T Consensus 250 ----------------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~-- 305 (470)
T TIGR00614 250 ----------------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK-- 305 (470)
T ss_pred ----------------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC--
Confidence 12378899999999999999999999999999999999999999999999987765
Q ss_pred ccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 901 FIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 901 ~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
+...|+||+|||||.| ..|.|++++.+.+...+..++..
T Consensus 306 --s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 --SMESYYQESGRAGRDG--LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred --CHHHHHhhhcCcCCCC--CCceEEEEechhHHHHHHHHHhc
Confidence 8899999999999999 78999999999988877777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=360.55 Aligned_cols=340 Identities=19% Similarity=0.221 Sum_probs=268.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYVSI 582 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~raL 582 (2191)
|+....+.|++.+|..++.+|.++|+. .++|+++|.+|.||||||++|++|+|+.+.+ .|--+|||.|||+|
T Consensus 76 ls~~t~kgLke~~fv~~teiQ~~~Ip~--aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTREL 153 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEIQRDTIPM--ALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTREL 153 (758)
T ss_pred CchHHHHhHhhcCCccHHHHHHhhcch--hccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHH
Confidence 457888999999999999999999987 8999999999999999999999999999886 46689999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcC--CCCccceEEEccccccccc
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEG--RLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~--~L~~l~lVVIDEaH~l~d~ 657 (2191)
|.|+++.+.++....++..+.+.|+..... --...+|+||||++++.++.. .. .-.++.++|+||++.+.|.
T Consensus 154 A~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde---~~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 154 ALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDE---NPNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred HHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhh---cCCCCCCcceEEEeccHHHHHHH
Confidence 999999999998888889988889874311 124578999999997666653 44 3467999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-CHHHHHHHh-hcccccc------ccc
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-NVAAVADWL-QAALYET------NFR 729 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N~~~la~wL-~a~l~~~------~~R 729 (2191)
+|..+++.|+..| ++..|.+++|||-. ++.++++.- ....|.. .-.
T Consensus 231 GFk~tL~~Ii~~l--------------------------P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~at 284 (758)
T KOG0343|consen 231 GFKKTLNAIIENL--------------------------PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAAT 284 (758)
T ss_pred hHHHHHHHHHHhC--------------------------ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccC
Confidence 9999999999887 56789999999976 377777652 1111100 011
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
|..|++++.+ .. .....+.+...+...+ ..+.|||++|.+++..++..+++.-+.
T Consensus 285 P~~L~Q~y~~------------------v~-l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg---- 339 (758)
T KOG0343|consen 285 PSNLQQSYVI------------------VP-LEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPG---- 339 (758)
T ss_pred hhhhhheEEE------------------Ee-hhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCC----
Confidence 1112211110 00 0112233344443332 468999999999998888777653211
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
..+..+||+|++..|..|...|-...--||+||++++||+|+|++.
T Consensus 340 ----------------------------------~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 340 ----------------------------------IPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred ----------------------------------CceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 1266789999999999999999998899999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccC
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~ 944 (2191)
+||..+.|. ++.+|+||+||+.|.+ +.|+|+++..+.+.+.+...|+..
T Consensus 386 wViQ~DCPe----dv~tYIHRvGRtAR~~--~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 386 WVIQVDCPE----DVDTYIHRVGRTARYK--ERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred eEEEecCch----hHHHHHHHhhhhhccc--CCCceEEEEcchhHHHHHHHHHHc
Confidence 999877765 8999999999999988 899999999999877777666655
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=369.35 Aligned_cols=339 Identities=21% Similarity=0.278 Sum_probs=261.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc------------CCEEEEE
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST------------GKMALLV 576 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~------------g~kaL~I 576 (2191)
++..+....+..|+..|+|+|+-+|+. +..|++++.||+||||||.+|++|++..++.. .+.+|++
T Consensus 81 l~~~l~~ni~~~~~~~ptpvQk~sip~--i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIl 158 (482)
T KOG0335|consen 81 LGEALAGNIKRSGYTKPTPVQKYSIPI--ISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALIL 158 (482)
T ss_pred hhHHHhhccccccccCCCcceeeccce--eecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEE
Confidence 778888888899999999999999987 99999999999999999999999999998863 3689999
Q ss_pred chhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccc
Q 000107 577 LPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELH 652 (2191)
Q Consensus 577 ~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH 652 (2191)
+|||+||.|++.+.+++....+.++...||+...+ ...++++|+||||+++.+++.+ ....|++++++|+||++
T Consensus 159 apTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 159 APTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEAD 236 (482)
T ss_pred eCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchH
Confidence 99999999999999999888889999999986432 2456799999999999999987 67789999999999999
Q ss_pred cccc-cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhcccccccccc
Q 000107 653 MVAD-QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRP 730 (2191)
Q Consensus 653 ~l~d-~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~Rp 730 (2191)
.|.| .+|++.++.|+..+... .....|.++||||.|. +..++..+-... +.-
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~~----------------------~~~~~qt~mFSAtfp~~iq~l~~~fl~~~----yi~ 290 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGMP----------------------PKNNRQTLLFSATFPKEIQRLAADFLKDN----YIF 290 (482)
T ss_pred HhhhhccccccHHHHhcccCCC----------------------CccceeEEEEeccCChhhhhhHHHHhhcc----ceE
Confidence 9999 89999999988776221 2356899999999873 333332221110 000
Q ss_pred ccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhc--C-----CcEEEEeCchhHHHHHHHHHHHHH
Q 000107 731 VPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQE--G-----HSVLIFCSSRKGCESTARHVSKFL 803 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~--g-----~~vLVF~~Sr~~~e~lA~~L~~~l 803 (2191)
+. .. .++...-+ ..+.+... ......+.+++++...... . ..++|||.|++.|..++..|....
T Consensus 291 la--V~-rvg~~~~n----i~q~i~~V--~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 291 LA--VG-RVGSTSEN----ITQKILFV--NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred EE--Ee-eecccccc----ceeEeeee--cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 00 00 00100000 00000000 0011223344444332211 1 379999999999998888875421
Q ss_pred hhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 000107 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883 (2191)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GV 883 (2191)
+....+|+..++.+|...++.|++|.+.|||||++++||+
T Consensus 362 ----------------------------------------~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGl 401 (482)
T KOG0335|consen 362 ----------------------------------------YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGL 401 (482)
T ss_pred ----------------------------------------CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCC
Confidence 1245589999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 884 NLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 884 NLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|+|+|++||+++.+. +..+|+||+||+||.| ..|.++.|++..
T Consensus 402 Di~~V~hVInyDmP~----d~d~YvHRIGRTGR~G--n~G~atsf~n~~ 444 (482)
T KOG0335|consen 402 DIPNVKHVINYDMPA----DIDDYVHRIGRTGRVG--NGGRATSFFNEK 444 (482)
T ss_pred CCCCCceeEEeecCc----chhhHHHhccccccCC--CCceeEEEeccc
Confidence 999999999999987 6889999999999999 899999999853
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=394.86 Aligned_cols=401 Identities=19% Similarity=0.244 Sum_probs=273.4
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh-ccCCeEEEEeccCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~-~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
+..++.+||+|+||||||+.....++..-....+++++..|.|-.|.+.+.++...+. .+|..|+. +.........+
T Consensus 86 i~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY--~vrf~~~~s~~ 163 (1294)
T PRK11131 86 IRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY--KVRFNDQVSDN 163 (1294)
T ss_pred HHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece--eecCccccCCC
Confidence 6778899999999999999755444432111124677788977666666555544333 24444431 22222334567
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc-ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM-VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~-l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~ 695 (2191)
++|+||||+++...+. ....++++++|||||+|+ ..+ ++.++..++.+...
T Consensus 164 t~I~v~TpG~LL~~l~---~d~~Ls~~~~IIIDEAHERsLn------~DfLLg~Lk~lL~~------------------- 215 (1294)
T PRK11131 164 TMVKLMTDGILLAEIQ---QDRLLMQYDTIIIDEAHERSLN------IDFILGYLKELLPR------------------- 215 (1294)
T ss_pred CCEEEEChHHHHHHHh---cCCccccCcEEEecCccccccc------cchHHHHHHHhhhc-------------------
Confidence 8999999999776664 456799999999999996 333 33344444433211
Q ss_pred CCCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChh---HHHHH
Q 000107 696 PAHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPD---HIVEL 771 (2191)
Q Consensus 696 ~~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d---~l~~L 771 (2191)
.++.|+|+||||+ +.+.++++++ +.++....|..|++.++..... ... ..+.+ .+...
T Consensus 216 -rpdlKvILmSATi-d~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~--~~~--------------~~~~d~l~~ll~~ 277 (1294)
T PRK11131 216 -RPDLKVIITSATI-DPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVE--EAD--------------DTERDQLQAIFDA 277 (1294)
T ss_pred -CCCceEEEeeCCC-CHHHHHHHcCCCCEEEEcCccccceEEEeeccc--ccc--------------hhhHHHHHHHHHH
Confidence 2568999999999 5677887775 3344444555555544332110 000 00111 22222
Q ss_pred HHHHH-hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEc
Q 000107 772 CDEVV-QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHH 850 (2191)
Q Consensus 772 l~e~~-~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hH 850 (2191)
+.++. ...+.+||||+++.+++.++..|.+.. .. ...|..+|
T Consensus 278 V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~----~~---------------------------------~~~VlpLh 320 (1294)
T PRK11131 278 VDELGREGPGDILIFMSGEREIRDTADALNKLN----LR---------------------------------HTEILPLY 320 (1294)
T ss_pred HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcC----CC---------------------------------cceEeecc
Confidence 22222 235789999999999999998885421 00 01277899
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--------------CCCcccCcccccccccccCC
Q 000107 851 AGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--------------IGRDFIDGTRYRQMAGRAGR 916 (2191)
Q Consensus 851 agLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--------------~g~~~is~~~y~QmiGRAGR 916 (2191)
|+|++++|..+++. .|..+|||||+++++|||||++++|||++. ....++|..+|.||+|||||
T Consensus 321 g~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 321 ARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred cCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 99999999999986 578999999999999999999999999752 12346788899999999999
Q ss_pred CCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhH
Q 000107 917 TGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDV 996 (2191)
Q Consensus 917 ~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~ 996 (2191)
.+ .|.||.+++++++..+.++ ..|.|..+ .+...+|.+.+.|+ .++..| .|+.++.
T Consensus 399 ~~---~G~c~rLyte~d~~~~~~~---~~PEIlR~------~L~~viL~lk~lgl----~di~~F---~fldpP~----- 454 (1294)
T PRK11131 399 VS---EGICIRLYSEDDFLSRPEF---TDPEILRT------NLASVILQMTALGL----GDIAAF---PFVEAPD----- 454 (1294)
T ss_pred CC---CcEEEEeCCHHHHHhhhcc---cCCccccC------CHHHHHHHHHHcCC----CCccee---eCCCCCC-----
Confidence 97 8999999999876554332 33444322 46677888887773 334333 4555543
Q ss_pred HHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 997 VKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 997 ~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
.++++++++.|...|+|..+.++....+|++|+.++..|++|..|++++....
T Consensus 455 ~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~ 507 (1294)
T PRK11131 455 KRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQK 507 (1294)
T ss_pred HHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhh
Confidence 36788999999999999743322235799999999999999999999998764
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=385.67 Aligned_cols=326 Identities=21% Similarity=0.281 Sum_probs=240.9
Q ss_pred HHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHh
Q 000107 516 IYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLL 594 (2191)
Q Consensus 516 ~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~ 594 (2191)
.+++ +||++|+|+|.++|+. ++.|+|+++++|||+|||++|.+|++. .++.++||+|+++|+.+++..++.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~--il~g~dvlv~~PTG~GKTl~y~lpal~----~~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISH--VLDGRDVLVVMPTGGGKSLCYQVPALL----LKGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCccHhHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 3444 8999999999999987 999999999999999999999999874 3667899999999999999887763
Q ss_pred hccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc--hhHHHH
Q 000107 595 EPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN--RGYLLE 664 (2191)
Q Consensus 595 ~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~--RG~~lE 664 (2191)
|+.+..+.++..... .....+|+++|||++.... +.......++++|||||+|++.+++ +.+.+.
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 777777776653211 2345799999999975321 1122345689999999999999764 233333
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccccccccceEEEEe
Q 000107 665 LLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETNFRPVPLEEYIKV 739 (2191)
Q Consensus 665 ~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~~RpvpL~e~i~~ 739 (2191)
.+...... -+..++|++|||.+. ..++..|++.. .+...+....+...+..
T Consensus 152 ~l~~l~~~------------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~ 207 (591)
T TIGR01389 152 RLGSLAER------------------------FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVK 207 (591)
T ss_pred HHHHHHHh------------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEe
Confidence 32222111 134569999999874 45678887632 22222211111111110
Q ss_pred ccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhh
Q 000107 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819 (2191)
Q Consensus 740 ~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~ 819 (2191)
. ....+.+..++... .+.++||||+|++.|+.++..|...
T Consensus 208 ~---------------------~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~----------------- 247 (591)
T TIGR01389 208 K---------------------NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQ----------------- 247 (591)
T ss_pred C---------------------CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhC-----------------
Confidence 0 01112233333321 2578999999999999998877431
Q ss_pred hHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCC
Q 000107 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899 (2191)
Q Consensus 820 ~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~ 899 (2191)
...+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++..+.
T Consensus 248 -----------------------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~- 303 (591)
T TIGR01389 248 -----------------------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG- 303 (591)
T ss_pred -----------------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC-
Confidence 12378899999999999999999999999999999999999999999999987765
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCC
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCP 946 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~ 946 (2191)
+...|.||+|||||.| ..|.|++++++.+...+..++....+
T Consensus 304 ---s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 304 ---NLESYYQEAGRAGRDG--LPAEAILLYSPADIALLKRRIEQSEA 345 (591)
T ss_pred ---CHHHHhhhhccccCCC--CCceEEEecCHHHHHHHHHHHhccCC
Confidence 8899999999999999 78999999999998888877766543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=382.04 Aligned_cols=327 Identities=23% Similarity=0.312 Sum_probs=238.4
Q ss_pred HHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHH
Q 000107 513 ICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLE 591 (2191)
Q Consensus 513 l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~ 591 (2191)
..+.+++ +||..|+|+|.++++. ++.|+|+++++|||+|||++|.+|++. .++.+|||+|+++|+.|+...+.
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~--il~g~dvlv~apTGsGKTl~y~lpal~----~~g~tlVisPl~sL~~dqv~~l~ 86 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDA--VLSGRDCLVVMPTGGGKSLCYQIPALV----LDGLTLVVSPLISLMKDQVDQLL 86 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCchHHHHHHHHHHH----cCCCEEEEecHHHHHHHHHHHHH
Confidence 3444544 7999999999999987 899999999999999999999999875 35679999999999999998876
Q ss_pred HHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch--hH
Q 000107 592 VLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR--GY 661 (2191)
Q Consensus 592 ~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R--G~ 661 (2191)
.+ |+.+..+.+...... .....+|+++|||++... .+.......++++|||||+|++.+++. .+
T Consensus 87 ~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 87 AN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--NFLEHLAHWNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred Hc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--HHHHHHhhCCCCEEEEeCccccccccCcccH
Confidence 53 666665555432211 123578999999997521 111222345789999999999998753 23
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhcc---cccccc-ccccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAA---LYETNF-RPVPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~---l~~~~~-RpvpL~e 735 (2191)
.+.. +..++.. .+++++++||||+++. .++..+++.. .+...+ ||. +..
T Consensus 161 ~y~~-L~~l~~~-----------------------~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~ 215 (607)
T PRK11057 161 EYAA-LGQLRQR-----------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRY 215 (607)
T ss_pred HHHH-HHHHHHh-----------------------CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-cee
Confidence 3322 3333322 2468899999998753 3455555421 111111 110 000
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
.+. . .......+..++.. ..++++||||+|++.|+.++..|.+.
T Consensus 216 ~v~------~---------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~------------- 259 (607)
T PRK11057 216 TLV------E---------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSR------------- 259 (607)
T ss_pred eee------e---------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhC-------------
Confidence 000 0 00111223333322 24679999999999999999887541
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
...+.++||+|+.++|..+++.|+.|.++|||||+++++|||+|++++||+++
T Consensus 260 ---------------------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 260 ---------------------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred ---------------------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 12388999999999999999999999999999999999999999999999987
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCC
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESC 945 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l 945 (2191)
.+. +..+|+||+|||||.| ..|.|++++++.+...+..++....
T Consensus 313 ~P~----s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~~ 356 (607)
T PRK11057 313 IPR----NIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEKP 356 (607)
T ss_pred CCC----CHHHHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcCC
Confidence 765 8899999999999999 6899999999999888877776544
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=357.69 Aligned_cols=407 Identities=21% Similarity=0.253 Sum_probs=318.9
Q ss_pred HHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH-HhhccCCeEEEEecc
Q 000107 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV-LLEPLGRHVRSYYGN 607 (2191)
Q Consensus 529 Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~-l~~~lg~~V~~~~G~ 607 (2191)
-.+.+.. +.+++.+||.|+||||||+.....+.+.-....+++.+..|+|-.|..+++++.. ....+|-.|+ |..
T Consensus 56 r~~il~~--ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG--Y~I 131 (674)
T KOG0922|consen 56 RDQILYA--VEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG--YTI 131 (674)
T ss_pred HHHHHHH--HHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee--eEE
Confidence 3445554 6789999999999999999999988887666666799999999999999887744 3344565554 223
Q ss_pred CCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 000107 608 QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENS 687 (2191)
Q Consensus 608 ~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~ 687 (2191)
+.+....+.+.|.+.|.+. |+|..+.++.|.++++|||||||+ |.-..+.++..|+.+..+
T Consensus 132 RFed~ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAHE-----Rsl~TDiLlGlLKki~~~----------- 192 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAHE-----RSLHTDILLGLLKKILKK----------- 192 (674)
T ss_pred EecccCCCceeEEEecchH---HHHHHhcCCccccccEEEEechhh-----hhhHHHHHHHHHHHHHhc-----------
Confidence 3333455678999999998 788888899999999999999999 999999999999988654
Q ss_pred CCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc-cccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChh
Q 000107 688 GTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPD 766 (2191)
Q Consensus 688 ~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a-~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d 766 (2191)
++++++|.||||+ |++.+.+|++. .++....|..|++.++..... .+.+.
T Consensus 193 ---------R~~LklIimSATl-da~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~-----~dYv~-------------- 243 (674)
T KOG0922|consen 193 ---------RPDLKLIIMSATL-DAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT-----ADYVD-------------- 243 (674)
T ss_pred ---------CCCceEEEEeeee-cHHHHHHHhcCCceEeecCCCCceeEEeccCCc-----hhhHH--------------
Confidence 4678999999998 89999999875 778889999999877653211 11110
Q ss_pred HHHHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCC
Q 000107 767 HIVELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPS 844 (2191)
Q Consensus 767 ~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~ 844 (2191)
..+..+.++. .+.+.+|||.+++++.+.++..|.+........ .+.
T Consensus 244 a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~--------------------------------~~~ 291 (674)
T KOG0922|consen 244 AALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPED--------------------------------CPE 291 (674)
T ss_pred HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcccc--------------------------------Ccc
Confidence 1111111121 345799999999999999999998765443211 001
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC---------CCCc-----ccCccccccc
Q 000107 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR---------IGRD-----FIDGTRYRQM 910 (2191)
Q Consensus 845 GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~---------~g~~-----~is~~~y~Qm 910 (2191)
-+..+||.|+.+++..|+..-..|..+|++||++++++|+||++++|||.++ .|.+ ++|.++..||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 2678999999999999999999999999999999999999999999999643 3332 6888899999
Q ss_pred ccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCC
Q 000107 911 AGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNST 990 (2191)
Q Consensus 911 iGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~ 990 (2191)
+|||||.| +|.||.+|+.+++. ++.....|.+..+ ++..++|.+.+.|+ .+.+.+.|+.++
T Consensus 372 aGRAGRt~---pGkcyRLYte~~~~---~~~~~~~PEI~R~------~Ls~~vL~Lkalgi-------~d~l~F~f~d~P 432 (674)
T KOG0922|consen 372 AGRAGRTG---PGKCYRLYTESAYD---KMPLQTVPEIQRV------NLSSAVLQLKALGI-------NDPLRFPFIDPP 432 (674)
T ss_pred cccCCCCC---CceEEEeeeHHHHh---hcccCCCCceeee------chHHHHHHHHhcCC-------CCcccCCCCCCC
Confidence 99999999 99999999998764 4677777777655 67788999999883 344566777776
Q ss_pred CcchhHHHHHHHHHHHHHHcccceeccCCCccCCCH-HHHHHHhcCCChhhHHHHHHHH
Q 000107 991 KPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTP-LGRAAFGSSLCPEESLIVLDDL 1048 (2191)
Q Consensus 991 ~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~-LG~a~~~s~L~p~~a~~l~~~L 1048 (2191)
.+ +++..||+.|...|.|+. ++ .+|. +|+.++..||+|..+++++..-
T Consensus 433 ~~-----~~l~~AL~~L~~lgald~--~g---~lt~p~G~~ma~~Pl~p~lsk~ll~s~ 481 (674)
T KOG0922|consen 433 PP-----EALEEALEELYSLGALDD--RG---KLTSPLGRQMAELPLEPHLSKMLLKSS 481 (674)
T ss_pred Ch-----HHHHHHHHHHHhcCcccC--cC---CcCchHHhhhhhcCCCcchhhhhhhcc
Confidence 54 677889999999999962 22 3555 9999999999999998877654
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=391.49 Aligned_cols=403 Identities=19% Similarity=0.198 Sum_probs=283.8
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh-ccCCeEEEEeccCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~-~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
+..++.+||+|+||||||+.....++..-....++++++.|+|..|...+.++.+.++ .+|..|+. +.........+
T Consensus 79 l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY--~vR~~~~~s~~ 156 (1283)
T TIGR01967 79 IAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY--KVRFHDQVSSN 156 (1283)
T ss_pred HHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee--EEcCCcccCCC
Confidence 6678899999999999999877666553222234788899999999999988765442 23433331 22333445667
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
+.|.|+|++.+...+ ..+..+.++++|||||+|+ |....+.++..++.+...
T Consensus 157 T~I~~~TdGiLLr~l---~~d~~L~~~~~IIIDEaHE-----RsL~~D~LL~lLk~il~~-------------------- 208 (1283)
T TIGR01967 157 TLVKLMTDGILLAET---QQDRFLSRYDTIIIDEAHE-----RSLNIDFLLGYLKQLLPR-------------------- 208 (1283)
T ss_pred ceeeeccccHHHHHh---hhCcccccCcEEEEcCcch-----hhccchhHHHHHHHHHhh--------------------
Confidence 899999999965544 3566799999999999996 444455555555544321
Q ss_pred CCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEV 775 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~ 775 (2191)
.+++|+|+||||+ +.+.++++++ +.++....|..|++.++...... .... . ....+.+...+.++
T Consensus 209 rpdLKlIlmSATl-d~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~--~~~~-~----------~~~~~~i~~~I~~l 274 (1283)
T TIGR01967 209 RPDLKIIITSATI-DPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEE--QEDD-D----------LDQLEAILDAVDEL 274 (1283)
T ss_pred CCCCeEEEEeCCc-CHHHHHHHhcCCCEEEECCCcccceeEEeccccc--ccch-h----------hhHHHHHHHHHHHH
Confidence 3578999999998 5678888886 44455555666665543311100 0000 0 00112333444444
Q ss_pred Hh-cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 776 VQ-EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 776 ~~-~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.. ..+.+|||+|++.+++.++..|.+.... ..-|..+||+|+
T Consensus 275 ~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~-------------------------------------~~~VlpLhg~Ls 317 (1283)
T TIGR01967 275 FAEGPGDILIFLPGEREIRDAAEILRKRNLR-------------------------------------HTEILPLYARLS 317 (1283)
T ss_pred HhhCCCCEEEeCCCHHHHHHHHHHHHhcCCC-------------------------------------CcEEEeccCCCC
Confidence 33 3479999999999999998888642100 112788999999
Q ss_pred HHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC--------------CCcccCcccccccccccCCCCCC
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI--------------GRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~--------------g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
.++|..+++.+ +..+|||||+++++|||||++++|||++.. ...++|.++|.||+|||||.|
T Consensus 318 ~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-- 393 (1283)
T TIGR01967 318 NKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-- 393 (1283)
T ss_pred HHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC--
Confidence 99999997654 347999999999999999999999997632 235678899999999999998
Q ss_pred CceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHH
Q 000107 921 TKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSA 1000 (2191)
Q Consensus 921 ~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~ 1000 (2191)
.|.||.+++.+++..+.. ...|.|... ++..++|.+.+.|+ .++.. +.|+.++. .+++
T Consensus 394 -~G~cyRLyte~~~~~~~~---~~~PEIlR~------~L~~viL~l~~lg~----~di~~---f~fldpP~-----~~~i 451 (1283)
T TIGR01967 394 -PGICIRLYSEEDFNSRPE---FTDPEILRT------NLASVILQMLALRL----GDIAA---FPFIEAPD-----PRAI 451 (1283)
T ss_pred -CceEEEecCHHHHHhhhh---ccCcccccc------cHHHHHHHHHhcCC----CCccc---ccCCCCCC-----HHHH
Confidence 999999999887655332 234444322 46677888888774 23333 34555544 3678
Q ss_pred HHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 1001 QDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 1001 ~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
.+|+..|...|+|.. +++.+.+|++|+.++.+|++|..|++++....
T Consensus 452 ~~A~~~L~~LGAld~--~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~ 498 (1283)
T TIGR01967 452 RDGFRLLEELGALDD--DEAEPQLTPIGRQLAQLPVDPRLARMLLEAHR 498 (1283)
T ss_pred HHHHHHHHHCCCCCC--CCCCccccHHHHHHhhcCCChHHHHHHHHhhh
Confidence 899999999999963 22235799999999999999999999998764
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=340.10 Aligned_cols=332 Identities=22% Similarity=0.295 Sum_probs=252.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYVSI 582 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~raL 582 (2191)
+++.+.+++.||.+|+|+|.|++|. +++|.+++..|.||+|||++|+++-+-++.. .+..+|+++||++|
T Consensus 229 pevmenIkK~GFqKPtPIqSQaWPI--~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 229 PEVMENIKKTGFQKPTPIQSQAWPI--LLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTREL 306 (629)
T ss_pred HHHHHHHHhccCCCCCcchhcccce--eecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHH
Confidence 6788888999999999999999988 9999999999999999999999987655542 45689999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
|.|+.-+..++ ..-|.+..++||+.... .+.++.+|++|||+++++|... ....+..|.++|+||++.|.|.+
T Consensus 307 alqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 307 ALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc
Confidence 99988776654 33467777778765432 3567899999999999999865 56689999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhccc--cccccccccc-
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAAL--YETNFRPVPL- 733 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~l--~~~~~RpvpL- 733 (2191)
+.+.+..+|--+ .++.|.|+.|||.|. +..++ .|+...+ |.....-+..
T Consensus 384 FEpqIrkilldi--------------------------RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~ 437 (629)
T KOG0336|consen 384 FEPQIRKILLDI--------------------------RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVK 437 (629)
T ss_pred ccHHHHHHhhhc--------------------------CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeee
Confidence 999888776554 478899999999986 55555 3444321 1111111111
Q ss_pred --eEEEEeccccccchhhHHHHHHHhhccCCCChhH--HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 734 --EEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDH--IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 734 --~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~--l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
++.+. . ..+.+. +............++||||..+..+. +|+..+.-.++
T Consensus 438 sVkQ~i~-----v-----------------~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD----~LSSd~~l~gi- 490 (629)
T KOG0336|consen 438 SVKQNII-----V-----------------TTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD----HLSSDFCLKGI- 490 (629)
T ss_pred eeeeeEE-----e-----------------cccHHHHHHHHHHHHhcCCCceEEEEEechhhhh----hccchhhhccc-
Confidence 01110 0 011111 12222223345679999999877544 44332211111
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
....+||+-.+.+|+..++.|++|.++|||||+++++|+|+|+++
T Consensus 491 -----------------------------------~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 491 -----------------------------------SSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred -----------------------------------chhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 133489999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
+|++++++. ++.+|.||+||+||+| ..|.++.+.+..+...+.+++
T Consensus 536 HV~NyDFP~----nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 536 HVYNYDFPR----NIEEYVHRVGRTGRAG--RTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred eeeccCCCc----cHHHHHHHhcccccCC--CCcceEEEEehhhHHHHHHHH
Confidence 999998876 8999999999999999 799999999988766655544
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=353.45 Aligned_cols=361 Identities=21% Similarity=0.276 Sum_probs=261.8
Q ss_pred cCCcCCC----CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---------
Q 000107 502 CLDLSSW----LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------- 568 (2191)
Q Consensus 502 ~l~L~~~----Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------- 568 (2191)
..|++.| ||.+++.+|...||.+|+++|.-+|+. ++....+++..|.||||||++|-+||+..+..
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~-ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPA-AIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccH-hhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456666 899999999999999999999999986 34444999999999999999999999995543
Q ss_pred ----cCCE--EEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhh-hc
Q 000107 569 ----TGKM--ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRML-EE 637 (2191)
Q Consensus 569 ----~g~k--aL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~-~~ 637 (2191)
.+.+ +||+.|||+||.|+.+++..+....+++|..++|+... ..+...++|+|+||+++..++..-- ..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 2344 99999999999999999999999999999999998753 2245578999999999999987522 23
Q ss_pred CCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHH--HH
Q 000107 638 GRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVA--AV 715 (2191)
Q Consensus 638 ~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~--~l 715 (2191)
..+.++.|+||||+++|.+.+.-..+..||..|..- +.....|.+.+|||+.-.. .+
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~---------------------~~~~qrQTlVFSATlt~~~~~~~ 394 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE---------------------QKNRQRQTLVFSATLTLVLQQPL 394 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh---------------------hcccccceEEEEEEeehhhcChh
Confidence 468899999999999999988878888888888421 1245679999999986210 00
Q ss_pred HHHh---------hcc----ccccccccccceEEEEeccccccchhhHHHHHHHhhccCCC--ChhHHHHHHHHHHhcCC
Q 000107 716 ADWL---------QAA----LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK--DPDHIVELCDEVVQEGH 780 (2191)
Q Consensus 716 a~wL---------~a~----l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~--d~d~l~~Ll~e~~~~g~ 780 (2191)
..-- ++. +-...+|.-| ..+... ........+....-.+.. ..-+++.++ ..-.+
T Consensus 395 ~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp--kiiD~t-----~q~~ta~~l~Es~I~C~~~eKD~ylyYfl---~ryPG 464 (731)
T KOG0347|consen 395 SSSRKKKDKEDELNAKIQHLMKKIGFRGKP--KIIDLT-----PQSATASTLTESLIECPPLEKDLYLYYFL---TRYPG 464 (731)
T ss_pred HHhhhccchhhhhhHHHHHHHHHhCccCCC--eeEecC-----cchhHHHHHHHHhhcCCccccceeEEEEE---eecCC
Confidence 0000 000 0011222222 111111 111111111111000000 000111111 11247
Q ss_pred cEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHH
Q 000107 781 SVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860 (2191)
Q Consensus 781 ~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~ 860 (2191)
.+|||||+...+..++-.|. ..++. -..+|+.|.+..|-.
T Consensus 465 rTlVF~NsId~vKRLt~~L~----~L~i~------------------------------------p~~LHA~M~QKqRLk 504 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLN----NLDIP------------------------------------PLPLHASMIQKQRLK 504 (731)
T ss_pred ceEEEechHHHHHHHHHHHh----hcCCC------------------------------------CchhhHHHHHHHHHH
Confidence 89999999987766665553 22211 234899999999999
Q ss_pred HHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhh
Q 000107 861 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGL 940 (2191)
Q Consensus 861 Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~l 940 (2191)
-++.|++..-.||+||+++|||+|||.+.+||+|-.+. +..-|+||.||+.|++ ..|.++++|.|.+...|.++
T Consensus 505 nLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr----tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 505 NLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR----TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred hHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC----ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHH
Confidence 99999999999999999999999999999999997776 5566999999999999 89999999999887666554
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=372.23 Aligned_cols=400 Identities=22% Similarity=0.235 Sum_probs=313.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh-ccCCeEEEEeccCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~-~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
+.+++.+||+||||||||+...+.++......++++.++.|+|--|..+++++.+.++ .+|-.|+ |....+.....+
T Consensus 62 i~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG--Y~iRfe~~~s~~ 139 (845)
T COG1643 62 IEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG--YSIRFESKVSPR 139 (845)
T ss_pred HHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee--EEEEeeccCCCC
Confidence 7789999999999999999999999988776677999999999999999988865443 3454444 233344456678
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
+.|-++|.+.+ ++.+..+..|+.+++|||||+|+ |....+.+|..++.+..+ .
T Consensus 140 Trik~mTdGiL---lrei~~D~~Ls~ys~vIiDEaHE-----RSl~tDilLgllk~~~~~-------------------r 192 (845)
T COG1643 140 TRIKVMTDGIL---LREIQNDPLLSGYSVVIIDEAHE-----RSLNTDILLGLLKDLLAR-------------------R 192 (845)
T ss_pred ceeEEeccHHH---HHHHhhCcccccCCEEEEcchhh-----hhHHHHHHHHHHHHHHhh-------------------c
Confidence 99999999994 55555688899999999999999 999999999999886543 2
Q ss_pred CCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEV 775 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~ 775 (2191)
++++++|.||||+ |.+.++.+|+ +.++....|..|++.++..... .+.. -.+.+...+...
T Consensus 193 r~DLKiIimSATl-d~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-~d~~----------------l~~ai~~~v~~~ 254 (845)
T COG1643 193 RDDLKLIIMSATL-DAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-ADYI----------------LLDAIVAAVDIH 254 (845)
T ss_pred CCCceEEEEeccc-CHHHHHHHcCCCCEEEecCCccceEEEecCCCC-cchh----------------HHHHHHHHHHHh
Confidence 3469999999998 7899999998 8889999999999887642211 0000 112333444444
Q ss_pred Hh-cCCcEEEEeCchhHHHHHHHHHHH-HHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCC
Q 000107 776 VQ-EGHSVLIFCSSRKGCESTARHVSK-FLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGL 853 (2191)
Q Consensus 776 ~~-~g~~vLVF~~Sr~~~e~lA~~L~~-~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagL 853 (2191)
.. ..+.+|||.|...+.+.++..|.+ .+.. ..-|.++||.|
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~-------------------------------------~~~i~PLy~~L 297 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKAELGD-------------------------------------DLEILPLYGAL 297 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhccccC-------------------------------------CcEEeeccccC
Confidence 43 358999999999999999998876 1110 01288999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC---------CC-----CcccCcccccccccccCCCCC
Q 000107 854 TVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR---------IG-----RDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 854 s~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~---------~g-----~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+.+++..|++-...|..+|++||++++++|+||++++|||+.. .| ..++|.++..||.|||||.+
T Consensus 298 ~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~- 376 (845)
T COG1643 298 SAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG- 376 (845)
T ss_pred CHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-
Confidence 9999999999999998999999999999999999999999643 22 34788999999999999998
Q ss_pred CCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHH
Q 000107 920 DTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKS 999 (2191)
Q Consensus 920 d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~ 999 (2191)
+|.||.+++.+++. .+.....|.|... ++...+|++.+-|+- .+...+.|+.++.. .+
T Consensus 377 --pGicyRLyse~~~~---~~~~~t~PEIlrt------dLs~~vL~l~~~G~~------~d~~~f~fld~P~~-----~~ 434 (845)
T COG1643 377 --PGICYRLYSEEDFL---AFPEFTLPEILRT------DLSGLVLQLKSLGIG------QDIAPFPFLDPPPE-----AA 434 (845)
T ss_pred --CceEEEecCHHHHH---hcccCCChhhhhc------chHHHHHHHHhcCCC------CCcccCccCCCCCh-----HH
Confidence 99999999997655 4566666665332 466778999888842 23445667766543 67
Q ss_pred HHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 1000 AQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 1000 ~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
+++|+..|...|++... + .+|++|+.++..+++|..|.+++..-.
T Consensus 435 i~~A~~~L~~LGAld~~--g---~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 435 IQAALTLLQELGALDDS--G---KLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred HHHHHHHHHHcCCcCCC--C---CCCHHHHHHHhCCCChHHHHHHHhccc
Confidence 88999999999999632 2 399999999999999999999887654
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=336.44 Aligned_cols=340 Identities=21% Similarity=0.274 Sum_probs=273.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-------cCCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-------TGKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-------~g~kaL~I~P~ra 581 (2191)
+.+.+....++.-|.++||+|.++++. .+.|++++-.|-||||||.+|..+++-++.. .|+..||++|||+
T Consensus 230 fDkqLm~airk~Ey~kptpiq~qalpt--alsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 230 FDKQLMTAIRKSEYEKPTPIQCQALPT--ALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRE 307 (731)
T ss_pred chHHHHHHHhhhhcccCCccccccccc--ccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHH
Confidence 567888888888999999999999987 8999999999999999999999999988875 4678999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
||.|++.+++++.+.+|+++..+||+-... .+..++.|+|||||++.+++.. ....+.+++++|+||++.|.+.
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcc
Confidence 999999999999999999999999986542 2456799999999999999875 6678999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-HhhccccccccccccceE
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALYETNFRPVPLEE 735 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~~~~~RpvpL~e 735 (2191)
++-+.+..|...+ .++.|.++||||++- ++.+++ +|.. ..|-|..
T Consensus 386 Gfe~qVrSI~~hi--------------------------rpdrQtllFsaTf~~kIe~lard~L~d-----pVrvVqg-- 432 (731)
T KOG0339|consen 386 GFEPQVRSIKQHI--------------------------RPDRQTLLFSATFKKKIEKLARDILSD-----PVRVVQG-- 432 (731)
T ss_pred ccHHHHHHHHhhc--------------------------CCcceEEEeeccchHHHHHHHHHHhcC-----CeeEEEe--
Confidence 9999988888777 377899999999873 444443 3332 1222211
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCC
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~ 813 (2191)
.++.. . ..+.+...........+..|+..+.. ..+++|||+.-+..++.++..|.-
T Consensus 433 --~vgea----n----~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl------------ 490 (731)
T KOG0339|consen 433 --EVGEA----N----EDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL------------ 490 (731)
T ss_pred --ehhcc----c----cchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc------------
Confidence 11100 0 01122222333444555556665554 346999999999888887766521
Q ss_pred CchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee
Q 000107 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 893 (2191)
Q Consensus 814 ~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~ 893 (2191)
-.+.|..+|+++.+.+|..++..|+.+...|||||+++++|+|||..+-||+
T Consensus 491 ----------------------------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 491 ----------------------------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred ----------------------------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 1234899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 894 QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 894 ~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
++... ++..|.||+||+||+| ..|.+|.++++.+.+..-.|+
T Consensus 543 yD~ar----dIdththrigrtgRag--~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 543 YDFAR----DIDTHTHRIGRTGRAG--EKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred ccccc----hhHHHHHHhhhccccc--ccceeeEEechhhHHHhhHHH
Confidence 88765 8889999999999999 789999999998876543333
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=340.61 Aligned_cols=378 Identities=20% Similarity=0.215 Sum_probs=268.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhh-------cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEch
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHV-------DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLP 578 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~-------~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P 578 (2191)
|...+.+.+.+++|++++|+|..+++. +....++++.|.||||||||++|.+||++.+..+ .-++|||+|
T Consensus 144 lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivP 223 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVP 223 (620)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEee
Confidence 445566778899999999999999875 1122468999999999999999999999988754 348999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-------CCC--CCceEEEchHHHHHHHHHhhhcCCCCccceEEEc
Q 000107 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-------LPK--DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVID 649 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-------l~~--~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVID 649 (2191)
++.|+.|++..|.++....|+.|..+.|...-.. .++ ..||+|+||+++.++++. .....|+++.++|||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-TKSFDLKHLRFLVID 302 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-CCCcchhhceEEEec
Confidence 9999999999999999999999988887653211 111 359999999999999886 355689999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhhcCCCCCCCC--CC----CC--CCCCCCCCCCCCceEEEEeccCC-CHHHHHHHhh
Q 000107 650 ELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS--GE----NS--GTSSGKADPAHGLQIVGMSATMP-NVAAVADWLQ 720 (2191)
Q Consensus 650 EaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~--~~----~~--~~~~~~~~~~~~iqII~mSATL~-N~~~la~wL~ 720 (2191)
|+|+|++..|..++..++..++....-....+-- .. .. ..-.....+.++.+.+.+|||+. ++..+.++--
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999999988888888777664331000000000 00 00 00011134456677889999986 4566655421
Q ss_pred -cc-ccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHH
Q 000107 721 -AA-LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 721 -a~-l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
.. ++... .| +- ..|.-.. .+....-... ....+-.+..++.. .+..++|+|+++...+..++..
T Consensus 383 ~~Prl~~v~-~~--~~-------~ryslp~-~l~~~~vv~~-~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~ 448 (620)
T KOG0350|consen 383 HIPRLFHVS-KP--LI-------GRYSLPS-SLSHRLVVTE-PKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHV 448 (620)
T ss_pred CCCceEEee-cc--cc-------eeeecCh-hhhhceeecc-cccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHH
Confidence 11 11100 00 00 0010000 0000000000 01223344455443 2457999999999999999888
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
|.-.+..... .+..+.|+|+...|...++.|..|.++|||||++
T Consensus 449 L~v~~~~~~~------------------------------------~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~ 492 (620)
T KOG0350|consen 449 LKVEFCSDNF------------------------------------KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDA 492 (620)
T ss_pred HHHHhccccc------------------------------------hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhh
Confidence 8644432211 1445789999999999999999999999999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
++||+|+.++.+||+|+.+. +..+|+||+||++|+| ..|.||.+....+...|.++++.
T Consensus 493 laRGiDv~~v~~VINYd~P~----~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 493 LARGIDVNDVDNVINYDPPA----SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred hhcCCcccccceEeecCCCc----hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 99999999999999988765 8889999999999999 78999999999887777777654
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=341.02 Aligned_cols=413 Identities=20% Similarity=0.251 Sum_probs=320.9
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-EEEEEchhHHHHHHHHHHHH-HHhhccCC
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAEKAEHLE-VLLEPLGR 599 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~-kaL~I~P~raLA~q~~~~l~-~l~~~lg~ 599 (2191)
.--.|++-.+.+.. +.+++.+||.|.||||||+.....+...-...++ ++-+..|+|-.|..++.++. ++...+|.
T Consensus 263 sLPVy~ykdell~a--v~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 263 SLPVYPYKDELLKA--VKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred cCCchhhHHHHHHH--HHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 33557777788866 8899999999999999999998888776555444 58899999999999987764 33334444
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.|+ |....+......+-|-++|.++ |++.++..+.|..+++|||||+|+ |.-..+.++..++.++..
T Consensus 341 eVG--YsIRFEdcTSekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAHE-----RTL~TDILfgLvKDIar~--- 407 (902)
T KOG0923|consen 341 EVG--YSIRFEDCTSEKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAHE-----RTLHTDILFGLVKDIARF--- 407 (902)
T ss_pred ccc--eEEEeccccCcceeeeeecchh---HHHHHhccccccceeEEEeehhhh-----hhhhhhHHHHHHHHHHhh---
Confidence 443 2333333344567899999999 778888899999999999999998 888999999999988753
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhh
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~ 758 (2191)
+++++++.+|||+ |++.+..|++ +.+|....|..|+..++....
T Consensus 408 -----------------RpdLKllIsSAT~-DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P----------------- 452 (902)
T KOG0923|consen 408 -----------------RPDLKLLISSATM-DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP----------------- 452 (902)
T ss_pred -----------------CCcceEEeecccc-CHHHHHHhccCCcEEeccCcccceeeecccCC-----------------
Confidence 5889999999997 8999999997 668888888888887654211
Q ss_pred ccCCCChhHHHHHHHHHH-----hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCC
Q 000107 759 NLGGKDPDHIVELCDEVV-----QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG 833 (2191)
Q Consensus 759 ~~~~~d~d~l~~Ll~e~~-----~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g 833 (2191)
..+.+-..+..++ ++.+.+|||.....+.+.+...|...+...+...
T Consensus 453 -----EAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski----------------------- 504 (902)
T KOG0923|consen 453 -----EADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKI----------------------- 504 (902)
T ss_pred -----chhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhcccc-----------------------
Confidence 1122222222222 3458999999999999988888877665543321
Q ss_pred CChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC---------CCCC-----
Q 000107 834 LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP---------RIGR----- 899 (2191)
Q Consensus 834 ld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p---------~~g~----- 899 (2191)
.+++ |.++|+.|+.+.+..|++--..|..+|++||++++++++|+++.+|||.+ +.|.
T Consensus 505 -----~eli---v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v 576 (902)
T KOG0923|consen 505 -----RELI---VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLV 576 (902)
T ss_pred -----ceEE---EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEE
Confidence 1122 88999999999999999999999999999999999999999999999853 3333
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHH
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~ 979 (2191)
.++|.++..||+|||||.| +|.||.+|+...+... +-....|.|.. .++...+|.+.+.| |.
T Consensus 577 ~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~aY~~e--LE~~t~PEIqR------tnL~nvVL~LkSLG-------I~ 638 (902)
T KOG0923|consen 577 TPISKASANQRAGRAGRTG---PGKCFRLYTAWAYEHE--LEEMTVPEIQR------TNLGNVVLLLKSLG-------IH 638 (902)
T ss_pred eeechhhhhhhccccCCCC---CCceEEeechhhhhhh--hccCCCcceee------ccchhHHHHHHhcC-------cc
Confidence 3688889999999999999 9999999997543332 22223455532 24667789898998 57
Q ss_pred HHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHH
Q 000107 980 RYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048 (2191)
Q Consensus 980 ~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L 1048 (2191)
+.+.+.|+.++.. +++..||+.|--.|++.. .-.+|.+|+.|+.+|++|..++++++.=
T Consensus 639 Dl~~FdFmDpPp~-----etL~~aLE~LyaLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ 697 (902)
T KOG0923|consen 639 DLIHFDFLDPPPT-----ETLLKALEQLYALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASE 697 (902)
T ss_pred hhcccccCCCCCh-----HHHHHHHHHHHHhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhc
Confidence 7788889888764 667788999999999842 2379999999999999999999988743
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=330.28 Aligned_cols=332 Identities=21% Similarity=0.313 Sum_probs=256.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh----------cCCEEEEEch
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS----------TGKMALLVLP 578 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~----------~g~kaL~I~P 578 (2191)
+|..+++.++++||.+|+|+|.+-|+. ++.|+++|-.|-||||||++|.+|++-..+. .|+-.|+|+|
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPv--vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicP 254 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPV--VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICP 254 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcce--EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcC
Confidence 799999999999999999999999987 9999999999999999999999998755442 5788999999
Q ss_pred hHHHHHHHHHHHHHHhhcc---C---CeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEE
Q 000107 579 YVSICAEKAEHLEVLLEPL---G---RHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~~l---g---~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVI 648 (2191)
.|+||.|.++-+..++..+ | ++.....|+...+ ....+.+|+|+||+++.+++.+ ....|+-..++++
T Consensus 255 SRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~l 332 (610)
T KOG0341|consen 255 SRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTL 332 (610)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhh
Confidence 9999999998887776543 2 2334445554332 2456899999999999999987 4456777899999
Q ss_pred cccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccccccc
Q 000107 649 DELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNF 728 (2191)
Q Consensus 649 DEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~ 728 (2191)
||++.+.|.+|...+..++..++ ...|.+++|||+| ..+..|-...++
T Consensus 333 DEADRmiDmGFEddir~iF~~FK--------------------------~QRQTLLFSATMP--~KIQ~FAkSALV---- 380 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFFK--------------------------GQRQTLLFSATMP--KKIQNFAKSALV---- 380 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHHh--------------------------hhhheeeeecccc--HHHHHHHHhhcc----
Confidence 99999999999999999888874 3468999999998 455555443332
Q ss_pred ccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 729 RPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 729 RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
.||.+ .+ +.. -....+++..+.... ....++.++.-+-+...++||||..+..+..+...|.- .+
T Consensus 381 KPvtv--NV--GRA-GAAsldViQevEyVk-----qEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl----KG- 445 (610)
T KOG0341|consen 381 KPVTV--NV--GRA-GAASLDVIQEVEYVK-----QEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLL----KG- 445 (610)
T ss_pred cceEE--ec--ccc-cccchhHHHHHHHHH-----hhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHH----cc-
Confidence 23322 11 111 011122222221111 12344555554445568999999998887766655521 11
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
.-+..+|||-.+++|...+++|+.|+-.|||||++++.|+|+|++
T Consensus 446 -----------------------------------VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~i 490 (610)
T KOG0341|consen 446 -----------------------------------VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDI 490 (610)
T ss_pred -----------------------------------ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccc
Confidence 116678999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 889 RVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 889 ~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.+||+++++. .+..|.||+||+||.| +.|.+..|.+..
T Consensus 491 qHVINyDMP~----eIENYVHRIGRTGRsg--~~GiATTfINK~ 528 (610)
T KOG0341|consen 491 QHVINYDMPE----EIENYVHRIGRTGRSG--KTGIATTFINKN 528 (610)
T ss_pred hhhccCCChH----HHHHHHHHhcccCCCC--Ccceeeeeeccc
Confidence 9999999987 8899999999999999 899999988763
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=320.30 Aligned_cols=352 Identities=18% Similarity=0.183 Sum_probs=247.7
Q ss_pred CCCCCCCCCCcCCcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHh-
Q 000107 492 TPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLIS- 568 (2191)
Q Consensus 492 ~P~~~~~~~e~l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~- 568 (2191)
.|..+...++.|.|. +++++.+..++|.+|..+|..++|. ++. .+|+|..+..|+|||.+|.+.||.++.-
T Consensus 84 sPlyS~ksFeeL~Lk----Pellkgly~M~F~kPskIQe~aLPl--ll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~ 157 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLK----PELLKGLYAMKFQKPSKIQETALPL--LLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD 157 (477)
T ss_pred CCccccccHHhhCCC----HHHHhHHHHhccCCcchHHHhhcch--hhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc
Confidence 344455555555555 6788877789999999999999987 554 6999999999999999999999988754
Q ss_pred -cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccC-CCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceE
Q 000107 569 -TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQ-GGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGII 646 (2191)
Q Consensus 569 -~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~-~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lV 646 (2191)
.-+.+++|+|+|+||.|..+.+.+.....++++....-+. ...-..-..+|+|+||+.+.++..++ ....+..+.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~kl-k~id~~kikvf 236 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKL-KCIDLEKIKVF 236 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHH-HhhChhhceEE
Confidence 3568999999999999999999888766655544332222 11111113589999999999988764 44568889999
Q ss_pred EEccccccccc-chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc
Q 000107 647 VIDELHMVADQ-NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE 725 (2191)
Q Consensus 647 VIDEaH~l~d~-~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~ 725 (2191)
|+||++.+.+. +++..--.|. . ..+++.|+|++|||.. +.++.|...-+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~----~----------------------~lP~~~QllLFSATf~--e~V~~Fa~kiv-- 286 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIM----R----------------------SLPRNQQLLLFSATFV--EKVAAFALKIV-- 286 (477)
T ss_pred Eecchhhhhhcccccccchhhh----h----------------------hcCCcceEEeeechhH--HHHHHHHHHhc--
Confidence 99999988875 2332221111 1 1246899999999975 34444432111
Q ss_pred cccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHH
Q 000107 726 TNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFL 803 (2191)
Q Consensus 726 ~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l 803 (2191)
++-.++ .++.... ....++.++ +.+...+.-.+.+.++.. .-++.||||.|++.+.+++..+...
T Consensus 287 pn~n~i----~Lk~eel----~L~~IkQly----v~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~- 353 (477)
T KOG0332|consen 287 PNANVI----ILKREEL----ALDNIKQLY----VLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE- 353 (477)
T ss_pred CCCcee----eeehhhc----cccchhhhe----eeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc-
Confidence 111111 1111000 000111111 111112222222222322 2268999999999999888877542
Q ss_pred hhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 000107 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883 (2191)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GV 883 (2191)
++.|..+||+|+.++|..+.+.||.|.-+|||+|++++|||
T Consensus 354 ---------------------------------------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGi 394 (477)
T KOG0332|consen 354 ---------------------------------------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGI 394 (477)
T ss_pred ---------------------------------------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccc
Confidence 23489999999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCC--CcccCcccccccccccCCCCCCCceEEEEEeChhhH
Q 000107 884 NLPARRVIFRQPRIG--RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934 (2191)
Q Consensus 884 NLPav~VVI~~p~~g--~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~ 934 (2191)
|++.+.+||+++.+- ....+...|+||+||+||.| +.|.+|-++...+.
T Consensus 395 Dv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 395 DVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG--KKGLAINLVDDKDS 445 (477)
T ss_pred ccceEEEEEecCCccccCCCCCHHHHHHHhccccccc--ccceEEEeecccCc
Confidence 999999999987652 23357889999999999999 89999999887543
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=363.58 Aligned_cols=338 Identities=24% Similarity=0.374 Sum_probs=268.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-------cCCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-------TGKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-------~g~kaL~I~P~ra 581 (2191)
+...++..+++.||.+++|+|.+|||. |..|+++|..|-||||||+.|.+||++++.. +|+.+||++|||+
T Consensus 372 l~~~il~tlkkl~y~k~~~IQ~qAiP~--ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtre 449 (997)
T KOG0334|consen 372 LSSKILETLKKLGYEKPTPIQAQAIPA--IMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRE 449 (997)
T ss_pred chHHHHHHHHHhcCCCCcchhhhhcch--hccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHH
Confidence 668888888999999999999999987 9999999999999999999999999988874 4789999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcC---CCCccceEEEcccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEG---RLSEIGIIVIDELHMV 654 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~---~L~~l~lVVIDEaH~l 654 (2191)
||.|+.+++..+...+++++...||+.... .+.+++.|+||||+++.+++-. ..+ .+.++.+||+||+|.|
T Consensus 450 la~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~--n~grvtnlrR~t~lv~deaDrm 527 (997)
T KOG0334|consen 450 LAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCA--NSGRVTNLRRVTYLVLDEADRM 527 (997)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhh--cCCccccccccceeeechhhhh
Confidence 999999999999999999999999987643 2556799999999999887653 333 4666679999999999
Q ss_pred cccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccc
Q 000107 655 ADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPL 733 (2191)
Q Consensus 655 ~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL 733 (2191)
.|.++.++...||..+ ++..|.|++|||++. +..++.-+.. . |+
T Consensus 528 fdmgfePq~~~Ii~nl--------------------------rpdrQtvlfSatfpr~m~~la~~vl~-------~--Pv 572 (997)
T KOG0334|consen 528 FDMGFEPQITRILQNL--------------------------RPDRQTVLFSATFPRSMEALARKVLK-------K--PV 572 (997)
T ss_pred heeccCcccchHHhhc--------------------------chhhhhhhhhhhhhHHHHHHHHHhhc-------C--Ce
Confidence 9999999888888777 367899999999985 4444433221 2 33
Q ss_pred eEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCC
Q 000107 734 EEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~ 813 (2191)
+..+.....++......++ .......+..++.+|+.+... ..++||||.....|..+.+.|.+.
T Consensus 573 eiiv~~~svV~k~V~q~v~----V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~a----------- 636 (997)
T KOG0334|consen 573 EIIVGGRSVVCKEVTQVVR----VCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKA----------- 636 (997)
T ss_pred eEEEccceeEeccceEEEE----EecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhc-----------
Confidence 3322211111111110000 001112345567777776654 679999999999999888877531
Q ss_pred CchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee
Q 000107 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 893 (2191)
Q Consensus 814 ~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~ 893 (2191)
++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++...+||+
T Consensus 637 -----------------------------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn 687 (997)
T KOG0334|consen 637 -----------------------------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN 687 (997)
T ss_pred -----------------------------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE
Confidence 112334899999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 894 QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 894 ~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
+..+. ...+|.||+||+||+| ..|.|+.|.++++.++
T Consensus 688 yd~pn----h~edyvhR~gRTgrag--rkg~AvtFi~p~q~~~ 724 (997)
T KOG0334|consen 688 YDFPN----HYEDYVHRVGRTGRAG--RKGAAVTFITPDQLKY 724 (997)
T ss_pred cccch----hHHHHHHHhcccccCC--ccceeEEEeChHHhhh
Confidence 98876 5567999999999999 8999999999965443
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=354.12 Aligned_cols=390 Identities=17% Similarity=0.204 Sum_probs=259.9
Q ss_pred HHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHH---------HHHHH----h-cCCEEEEEchhHHHHHHHHHHHHH
Q 000107 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILM---------LRRLI----S-TGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 527 p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~i---------L~~ll----~-~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
.+|.++++. +++|+++|+.|+||||||++....+ +..+. . .++++++++|+|+||.|+..++.+
T Consensus 167 ~iQ~qil~~--i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEA--WISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHH--HHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 479999987 8999999999999999999854333 22221 1 356899999999999999988876
Q ss_pred Hhhc---cCCeEEEEeccCCCC---CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHH
Q 000107 593 LLEP---LGRHVRSYYGNQGGG---SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELL 666 (2191)
Q Consensus 593 l~~~---lg~~V~~~~G~~~~~---~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~l 666 (2191)
..+. .|..|...+|+.... ...+..+|+|+|+.. ....+.++++|||||+|++... + +.+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~--~---Dll 310 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI--G---DII 310 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc--h---hHH
Confidence 5543 256677888887532 122356899999652 2235788999999999998664 3 334
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-CHHHHHHHhhcc-cccccccc-ccceEEEEecccc
Q 000107 667 LTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-NVAAVADWLQAA-LYETNFRP-VPLEEYIKVGNAI 743 (2191)
Q Consensus 667 L~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N~~~la~wL~a~-l~~~~~Rp-vpL~e~i~~~~~~ 743 (2191)
+..++... ....|+++||||++ +.+.+.+|++.. .+....+. .|+++++......
T Consensus 311 L~llk~~~----------------------~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~ 368 (675)
T PHA02653 311 IAVARKHI----------------------DKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYN 368 (675)
T ss_pred HHHHHHhh----------------------hhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcc
Confidence 44443321 12248999999997 467788888632 23333332 4555443211110
Q ss_pred ccchhhHHHHHHHhhccCCCChhHHHHHHHHHH-hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVV-QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 744 ~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~-~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
......... .....+...+.... ..++++||||+++.+|+.++..|.+..+
T Consensus 369 ~~~~~~y~~----------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------------------ 420 (675)
T PHA02653 369 PKNKRAYIE----------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP------------------ 420 (675)
T ss_pred cccchhhhH----------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC------------------
Confidence 000000000 01112233333222 2357999999999999999888864320
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHh-hcCCceEEEecccccccCCCCCceEEeecCC---C-
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCY-RKGLVRVLTATSTLAAGVNLPARRVIFRQPR---I- 897 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~F-r~G~ikVLVATstLa~GVNLPav~VVI~~p~---~- 897 (2191)
...+..+||+|++. +.+++.| ++|..+|||||+++++|||||++++|||++. +
T Consensus 421 --------------------~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 421 --------------------IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred --------------------CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 12288899999975 3555666 7899999999999999999999999999862 1
Q ss_pred ---C-CcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhccccc
Q 000107 898 ---G-RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQ 973 (2191)
Q Consensus 898 ---g-~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~ 973 (2191)
+ ..++|.++|.||+|||||.+ +|.||.++++++... +... +...+...+|++.+-|+ .
T Consensus 479 ~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~~~~p-----------I~ri---~~~~L~~~vL~lk~~g~-~ 540 (675)
T PHA02653 479 PFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLDLLKP-----------IKRI---DSEFLHNYILYAKYFNL-T 540 (675)
T ss_pred cccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHHHhHH-----------HHHH---hHHHHHHHHHHHHHcCC-C
Confidence 1 23678999999999999996 899999999876421 2111 11246677888888885 2
Q ss_pred CHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHH--HHHHHhcCCChhhHHHHH
Q 000107 974 TAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPL--GRAAFGSSLCPEESLIVL 1045 (2191)
Q Consensus 974 t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~L--G~a~~~s~L~p~~a~~l~ 1045 (2191)
..++ + |+.++. .+++..|++.|...|+.. + .+|.| |+-++.. +.|+.++
T Consensus 541 ~~~~----~---~ldpP~-----~~~l~~A~~~L~~lga~~---~----~l~~l~~~~~~~~~----~~~k~~~ 591 (675)
T PHA02653 541 LPED----L---FVIPSN-----LDRLRKTEEYIDSFNISI---E----KWYEILSNYYVNML----EYAKIYV 591 (675)
T ss_pred Cccc----c---cCCCCC-----HHHHHHHHHHHHHcCCCc---h----hhhhhhccccHHHH----HHhHHHh
Confidence 2211 1 455443 367788999999999763 1 47888 7766544 4555443
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=326.96 Aligned_cols=413 Identities=20% Similarity=0.259 Sum_probs=319.1
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH-HhhccCCeE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV-LLEPLGRHV 601 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~-l~~~lg~~V 601 (2191)
--.+..+.+.+.. +..++.+||.+.||||||+.....++..-....+.+-+..|+|..|..+++++.. +...+|-.|
T Consensus 355 LPvf~~R~~ll~~--ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 355 LPVFACRDQLLSV--IRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred cchHHHHHHHHHH--HhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 3456677787776 7889999999999999999988888776666677899999999999999988754 333455555
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
+ |....+.-...++.|-++|.+. |++..+.+..|..+++||+||+|+ |..+.+.++..++....+
T Consensus 433 G--YsIRFEdvT~~~T~IkymTDGi---LLrEsL~d~~L~kYSviImDEAHE-----RslNtDilfGllk~~lar----- 497 (1042)
T KOG0924|consen 433 G--YSIRFEDVTSEDTKIKYMTDGI---LLRESLKDRDLDKYSVIIMDEAHE-----RSLNTDILFGLLKKVLAR----- 497 (1042)
T ss_pred c--eEEEeeecCCCceeEEEeccch---HHHHHhhhhhhhheeEEEechhhh-----cccchHHHHHHHHHHHHh-----
Confidence 4 2222333344678899999998 677777888999999999999998 888889998888877543
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhh-ccccccccccccceEEEEeccccccchhhHHHHHHHhhcc
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ-AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANL 760 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~-a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~ 760 (2191)
+.++++|.+|||+ |++.++.|+| +..|....|..|++..+.-..
T Consensus 498 ---------------RrdlKliVtSATm-~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p------------------- 542 (1042)
T KOG0924|consen 498 ---------------RRDLKLIVTSATM-DAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTP------------------- 542 (1042)
T ss_pred ---------------hccceEEEeeccc-cHHHHHHHhCCCceeeecCCccceEEEeccCc-------------------
Confidence 4589999999998 8999999999 888889999999876543111
Q ss_pred CCCChhHHHHHHHHHH-----hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCC
Q 000107 761 GGKDPDHIVELCDEVV-----QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLD 835 (2191)
Q Consensus 761 ~~~d~d~l~~Ll~e~~-----~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld 835 (2191)
..|.+...+...+ ...+.+|||.+....++.++..|...+...... +.
T Consensus 543 ---~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~---------------------~~--- 595 (1042)
T KOG0924|consen 543 ---VEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA---------------------PT--- 595 (1042)
T ss_pred ---hHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC---------------------CC---
Confidence 1112222222221 123789999999999999888887765432111 00
Q ss_pred hhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC---------CCCCc-----c
Q 000107 836 PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP---------RIGRD-----F 901 (2191)
Q Consensus 836 ~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p---------~~g~~-----~ 901 (2191)
-...|..+|+.|+.+-+..|++.-..|..+|||||++++.++++|++++||+.+ ..|.+ +
T Consensus 596 ------~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~p 669 (1042)
T KOG0924|consen 596 ------TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVP 669 (1042)
T ss_pred ------CceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEe
Confidence 112388999999999999999999999999999999999999999999999953 44533 6
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHH
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRY 981 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~ 981 (2191)
||.+...||+|||||.| +|.||.+|+.+.+ ..+++...+|.|... ++...+|-+.+.| +.+.
T Consensus 670 IS~AnA~QRaGRAGRt~---pG~cYRlYTe~ay--~~eml~stvPEIqRT------Nl~nvVLlLkslg-------V~dl 731 (1042)
T KOG0924|consen 670 ISQANADQRAGRAGRTG---PGTCYRLYTEDAY--KNEMLPSTVPEIQRT------NLSNVVLLLKSLG-------VDDL 731 (1042)
T ss_pred chhccchhhccccCCCC---CcceeeehhhhHH--HhhcccCCCchhhhc------chhhHHHHHHhcC-------hhhh
Confidence 78889999999999999 9999999998543 346788888877433 4667788888887 4555
Q ss_pred HHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHH
Q 000107 982 VRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048 (2191)
Q Consensus 982 l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L 1048 (2191)
+.+.|+.++. .+.+..++-.|--.|+|.- . -.+|++|+.|+.++|+|..+++++-..
T Consensus 732 l~FdFmD~Pp-----ed~~~~sly~Lw~LGAl~~--~---g~LT~lG~~MvefpLDP~lsKmll~a~ 788 (1042)
T KOG0924|consen 732 LKFDFMDPPP-----EDNLLNSLYQLWTLGALDN--T---GQLTPLGRKMVEFPLDPPLSKMLLMAA 788 (1042)
T ss_pred hCCCcCCCCH-----HHHHHHHHHHHHHhhcccc--C---CccchhhHHhhhCCCCchHHHHHHHHh
Confidence 6667777654 3567788888888999852 1 259999999999999999999987654
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=360.45 Aligned_cols=313 Identities=17% Similarity=0.256 Sum_probs=226.8
Q ss_pred HHHHHHHH-HcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHH
Q 000107 511 SEICSIYK-KRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583 (2191)
Q Consensus 511 ~~l~~~l~-~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA 583 (2191)
..+.+.+. ..+| +|++.|.+||+. ++.+ +|.+++||||+|||.+|.++++..+. .+++++|++||++||
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~--I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~g~qvlvLvPT~~LA 513 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEE--IKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-DGKQVAVLVPTTLLA 513 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHH--HHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-hCCeEEEEeCcHHHH
Confidence 34444444 4688 599999999986 6653 79999999999999999999998775 578999999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+++.|++++..+++++..++|...... + ...++|+|+||. ++. ....++++++|||||+|+++
T Consensus 514 ~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~---~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 514 QQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQ---KDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hhh---CCCCcccCCEEEeecccccc
Confidence 99999999999988999988887654211 1 235899999994 332 34468899999999999964
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc----cc-cccccc
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA----LY-ETNFRP 730 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~----l~-~~~~Rp 730 (2191)
. .....+..+ ..++|+++||||+ .+..+...+... ++ ......
T Consensus 587 v-----~~~~~L~~~--------------------------~~~~~vL~~SATp-iprtl~~~l~g~~d~s~I~~~p~~R 634 (926)
T TIGR00580 587 V-----KQKEKLKEL--------------------------RTSVDVLTLSATP-IPRTLHMSMSGIRDLSIIATPPEDR 634 (926)
T ss_pred h-----hHHHHHHhc--------------------------CCCCCEEEEecCC-CHHHHHHHHhcCCCcEEEecCCCCc
Confidence 3 222222222 2468999999995 344444332211 11 001111
Q ss_pred ccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccccc
Q 000107 731 VPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINV 810 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~ 810 (2191)
.|++.++.. .+...+...+...+..+++++||||+++.++.++..|.+.++
T Consensus 635 ~~V~t~v~~-----------------------~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p------ 685 (926)
T TIGR00580 635 LPVRTFVME-----------------------YDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP------ 685 (926)
T ss_pred cceEEEEEe-----------------------cCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC------
Confidence 122222210 011122233333445678999999999999988887765321
Q ss_pred CCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE
Q 000107 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890 (2191)
Q Consensus 811 ~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V 890 (2191)
...|+.+||+|++++|+.+++.|++|+++|||||+++++|||+|++++
T Consensus 686 --------------------------------~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 686 --------------------------------EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred --------------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 123889999999999999999999999999999999999999999988
Q ss_pred EeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 891 VI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
||..... .....+|.||+||+||.| ..|.||+++.+.
T Consensus 734 VIi~~a~---~~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 734 IIIERAD---KFGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred EEEecCC---CCCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 8743221 124568999999999998 799999998653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=353.58 Aligned_cols=323 Identities=21% Similarity=0.281 Sum_probs=225.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
..+.+.+...+| +|++.|.+|++. ++.+ .|.+++||||||||++|.++++..+. .|.+++|++||++||.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~--I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKE--ILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-AGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHH--HHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-cCCcEEEECCHHHHHH
Confidence 334566777899 799999999986 6654 47899999999999999999988765 5889999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
|+++.+++++..+|+++..++|+..... ....++|+|+||+.+. ....+.++++|||||+|+++.
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-------~~~~~~~l~lvVIDEaH~fg~ 371 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-------EKVEFKRLALVIIDEQHRFGV 371 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-------ccccccccceEEEechhhccH
Confidence 9999999999999999999999865321 1235799999998643 234578899999999999765
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccccccccc-----c
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRP-----V 731 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~Rp-----v 731 (2191)
..|.. +..+.. ....+++++||||.. +..++..+...+.....+. .
T Consensus 372 ~qr~~----l~~~~~------------------------~~~~~~~l~~SATp~-prtl~l~~~~~l~~~~i~~~p~~r~ 422 (630)
T TIGR00643 372 EQRKK----LREKGQ------------------------GGFTPHVLVMSATPI-PRTLALTVYGDLDTSIIDELPPGRK 422 (630)
T ss_pred HHHHH----HHHhcc------------------------cCCCCCEEEEeCCCC-cHHHHHHhcCCcceeeeccCCCCCC
Confidence 43322 111110 012568999999953 3333322211111111111 1
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
|+..++. .....+.+...+.+.+..+++++|||+.....+.+...-
T Consensus 423 ~i~~~~~----------------------~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~------------ 468 (630)
T TIGR00643 423 PITTVLI----------------------KHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKA------------ 468 (630)
T ss_pred ceEEEEe----------------------CcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHH------------
Confidence 2211111 001123445555566667899999999876544321000
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV 891 (2191)
.....+.+.. ..-...|+.+||+|++++|+.+++.|++|.++|||||+++++|||+|++++|
T Consensus 469 --------a~~~~~~L~~----------~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~V 530 (630)
T TIGR00643 469 --------AEALYERLKK----------AFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVM 530 (630)
T ss_pred --------HHHHHHHHHh----------hCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEE
Confidence 0001111110 0013459999999999999999999999999999999999999999999988
Q ss_pred eecCCCCCcccCcccccccccccCCCCCCCceEEEEEeC
Q 000107 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 892 I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
|.+..+ ......|.||+||+||.| ..|.||+++.
T Consensus 531 Ii~~~~---r~gls~lhQ~~GRvGR~g--~~g~~il~~~ 564 (630)
T TIGR00643 531 VIEDAE---RFGLSQLHQLRGRVGRGD--HQSYCLLVYK 564 (630)
T ss_pred EEeCCC---cCCHHHHHHHhhhcccCC--CCcEEEEEEC
Confidence 764432 235678999999999998 7899999983
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=313.48 Aligned_cols=331 Identities=20% Similarity=0.221 Sum_probs=246.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~r 580 (2191)
|++.+++++.+.||.+|+-+|..+|+. +++|+|++..|.||||||.+|++|+++.++. .+..+++++||+
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIpl--aLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPL--ALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccch--hhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 678999999999999999999999987 8999999999999999999999999999885 356899999999
Q ss_pred HHHHHHHHHHHHHhhccC--CeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 581 SICAEKAEHLEVLLEPLG--RHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg--~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+||+|++..+.++....+ +++.-+..+..+ ..+...++|+|+||+++..++..-. ...+..+.++|+||+|++
T Consensus 104 EL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~-~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 104 ELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV-LEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc-chhhhheeeEEechhhhh
Confidence 999999999988766544 233322322222 1244568999999999888776411 146788999999999999
Q ss_pred cccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhcccc----cccc-
Q 000107 655 ADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALY----ETNF- 728 (2191)
Q Consensus 655 ~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~----~~~~- 728 (2191)
...++...+..+...| ++..|-++||||+.+ +..+...+-...+ ....
T Consensus 183 lsfGYeedlk~l~~~L--------------------------Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el 236 (569)
T KOG0346|consen 183 LSFGYEEDLKKLRSHL--------------------------PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL 236 (569)
T ss_pred hhcccHHHHHHHHHhC--------------------------CchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC
Confidence 8765555555555554 467899999999973 5555554332211 1111
Q ss_pred -ccccceEEEE-eccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 729 -RPVPLEEYIK-VGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 729 -RpvpL~e~i~-~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
.|-.+..|.. ++ ..+.+-.++.++. +---.+++|||+||.+.|..+--.|..+.
T Consensus 237 ~~~dqL~Qy~v~cs--------------------e~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFG--- 292 (569)
T KOG0346|consen 237 PNPDQLTQYQVKCS--------------------EEDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFG--- 292 (569)
T ss_pred CCcccceEEEEEec--------------------cchhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhC---
Confidence 1112222211 11 0111222333332 22235799999999999998876665432
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecc---------
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS--------- 877 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATs--------- 877 (2191)
+. .+.+.|.|+..-|--|++.|..|..++||||+
T Consensus 293 -ik------------------------------------sciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 293 -IK------------------------------------SCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred -cH------------------------------------hhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 11 23378899999999999999999999999999
Q ss_pred --------------------------cccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 878 --------------------------TLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 878 --------------------------tLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
-.+||||+..+..||+++++. +...|+||+||++|.+ ++|.++.|+.+
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~----t~~sYIHRvGRTaRg~--n~GtalSfv~P 409 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE----TVTSYIHRVGRTARGN--NKGTALSFVSP 409 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC----chHHHHHhccccccCC--CCCceEEEecc
Confidence 247899999999999988876 8889999999999999 89999999998
Q ss_pred hhHH
Q 000107 932 EEVK 935 (2191)
Q Consensus 932 ~e~~ 935 (2191)
.+..
T Consensus 410 ~e~~ 413 (569)
T KOG0346|consen 410 KEEF 413 (569)
T ss_pred hHHh
Confidence 6543
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=352.00 Aligned_cols=317 Identities=21% Similarity=0.315 Sum_probs=223.6
Q ss_pred HHHHHHHcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 513 ICSIYKKRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 513 l~~~l~~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
+.+.....+| +|++.|.+|++. +..+ .|.+++||||||||++|.++++..+. .|.+++|++||++||.|+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~--I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAE--ILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-AGYQAALMAPTEILAEQH 326 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHH--HHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccHHHHHHH
Confidence 3444556788 699999999986 6654 58999999999999999999998765 588999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC-------CC-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG-------SL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~-------~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
++.+++++..+|++|..++|+.... .+ ...++|+|+||+.+.. ...+.++++|||||+|.++...
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH
Confidence 9999999999999999999987521 11 2358999999986532 2357889999999999975432
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccccc--cccc---ccc
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYET--NFRP---VPL 733 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~--~~Rp---vpL 733 (2191)
|. .++.. ...+++++||||. .+..++-.+...+... ...| .|+
T Consensus 400 r~--------~l~~~-----------------------~~~~~iL~~SATp-~prtl~~~~~g~~~~s~i~~~p~~r~~i 447 (681)
T PRK10917 400 RL--------ALREK-----------------------GENPHVLVMTATP-IPRTLAMTAYGDLDVSVIDELPPGRKPI 447 (681)
T ss_pred HH--------HHHhc-----------------------CCCCCEEEEeCCC-CHHHHHHHHcCCCceEEEecCCCCCCCc
Confidence 22 12111 1347899999995 3344432221111100 0011 111
Q ss_pred eEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCC
Q 000107 734 EEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~ 813 (2191)
..++. .....+.+...+.+.+..+++++|||+..+.++.+...
T Consensus 448 ~~~~~----------------------~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~--------------- 490 (681)
T PRK10917 448 TTVVI----------------------PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ--------------- 490 (681)
T ss_pred EEEEe----------------------CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH---------------
Confidence 11111 01122344555666667789999999976654422000
Q ss_pred CchhhhhHHHHHHhhcCCCCCChhhhhhc-CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 814 DSEFIDITSAIDALRRCPAGLDPVLEETL-PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 814 ~~~~~~~~~~~~~L~~~~~gld~~L~~~l-~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
......+.|. +.+ ...|+.+||+|++++|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 491 -----~~~~~~~~L~-----------~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 491 -----SAEETYEELQ-----------EAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred -----HHHHHHHHHH-----------HHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 0000111111 111 14599999999999999999999999999999999999999999999988
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeC
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
.+..+ ....++|.||+||+||.| ..|.||++++
T Consensus 555 i~~~~---r~gls~lhQ~~GRvGR~g--~~g~~ill~~ 587 (681)
T PRK10917 555 IENAE---RFGLAQLHQLRGRVGRGA--AQSYCVLLYK 587 (681)
T ss_pred EeCCC---CCCHHHHHHHhhcccCCC--CceEEEEEEC
Confidence 65432 124567899999999998 7899999995
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=326.76 Aligned_cols=340 Identities=19% Similarity=0.274 Sum_probs=251.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-------CCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-------GKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-------g~kaL~I~P~ra 581 (2191)
....+++.+...||..|+|+|.+|++. ++.+++++.|||||+|||++|.+|++.++... |-+++|+.|+++
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipv--fl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPV--FLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhh--hhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 567889999999999999999999987 89999999999999999999999999988753 458999999999
Q ss_pred HHHHHHHHHHHHh--hccCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 582 ICAEKAEHLEVLL--EPLGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 582 LA~q~~~~l~~l~--~~lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
||.|++.++.++. ...+.++..+........ ....++|+|.||-++..++..-.-...+..|.++|+||++++
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~l 300 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLL 300 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhh
Confidence 9999999999887 555555544433321111 112379999999997766653111236889999999999999
Q ss_pred ccc-chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccc
Q 000107 655 ADQ-NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPL 733 (2191)
Q Consensus 655 ~d~-~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL 733 (2191)
.+. .+-.++..|+..+ ..+.+++=+||||++ ..+.+|.....-.....+|.+
T Consensus 301 fe~~~f~~Qla~I~sac-------------------------~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~ 353 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSAC-------------------------QSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGL 353 (593)
T ss_pred hChhhHHHHHHHHHHHh-------------------------cCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEec
Confidence 987 4444555555443 137889999999976 566777653321111111111
Q ss_pred eEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcC--CcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 734 EEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEG--HSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g--~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
. + .....+.+..-..+.....++ .+++++..| .++|||+.+.+.|..+...|.. +
T Consensus 354 ~------~-------sa~~~V~QelvF~gse~~K~l-A~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~-~-------- 410 (593)
T KOG0344|consen 354 R------N-------SANETVDQELVFCGSEKGKLL-ALRQLVASGFKPPVLIFVQSKERAKQLFEELEI-Y-------- 410 (593)
T ss_pred c------h-------hHhhhhhhhheeeecchhHHH-HHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh-c--------
Confidence 1 0 001111111111222222332 234445444 6999999999999888777641 0
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV 891 (2191)
+. -.|.+.||..++.+|+.+.++||.|+|.||+||+++++|+|+.+++.|
T Consensus 411 -------------~~-----------------i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 411 -------------DN-----------------INVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred -------------cC-----------------cceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 00 128899999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 892 I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
|+++.+. +..+|+||+||+||+| ..|.+|+||+..+...
T Consensus 461 InyD~p~----s~~syihrIGRtgRag--~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 461 INYDFPQ----SDLSYIHRIGRTGRAG--RSGKAITFYTDQDMPR 499 (593)
T ss_pred EecCCCc----hhHHHHHHhhccCCCC--CCcceEEEeccccchh
Confidence 9999887 7789999999999999 8999999999865443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=329.03 Aligned_cols=326 Identities=24% Similarity=0.330 Sum_probs=244.4
Q ss_pred HHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHH
Q 000107 515 SIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 515 ~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
..|++ +||..+++-|.++|.. ++.|+|+++..|||+||++||.+|.+-. .+-+|+|.|..+|...+++.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~--~l~g~d~lvvmPTGgGKSlCyQiPAll~----~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDA--LLSGKDTLVVMPTGGGKSLCYQIPALLL----EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHH--HHcCCcEEEEccCCCCcchHhhhHHHhc----CCCEEEECchHHHHHHHHHHHHHc
Confidence 44544 7999999999999987 9999999999999999999999998643 558999999999999999888764
Q ss_pred hhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHH-HHHhhhcCCCCccceEEEcccccccccc--hhHH
Q 000107 594 LEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSL-VNRMLEEGRLSEIGIIVIDELHMVADQN--RGYL 662 (2191)
Q Consensus 594 ~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~L-l~~l~~~~~L~~l~lVVIDEaH~l~d~~--RG~~ 662 (2191)
|+.+..+.+...... .....++++-+||++..- +...+. -..+.++||||+|++++|+ |.+.
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~---~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK---RLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH---hCCCceEEechHHHHhhcCCccCHh
Confidence 777766555432211 223479999999997432 222222 4568999999999999996 6666
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccc-cccccceEE
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETN-FRPVPLEEY 736 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~-~RpvpL~e~ 736 (2191)
+..+-..... -+++.++++|||-+. ..++.+-|+.. +|... .||-
T Consensus 154 Y~~lg~l~~~------------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN----- 204 (590)
T COG0514 154 YRRLGRLRAG------------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN----- 204 (590)
T ss_pred HHHHHHHHhh------------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch-----
Confidence 6655444322 247899999999754 45666666533 22111 1221
Q ss_pred EEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH-HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 737 IKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE-VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 737 i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e-~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
. ...+. . .....+.+. .+.+ ....+++.||||.||+.||.+|..|...
T Consensus 205 -----i----~~~v~----~----~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~------------- 253 (590)
T COG0514 205 -----L----ALKVV----E----KGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN------------- 253 (590)
T ss_pred -----h----hhhhh----h----cccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC-------------
Confidence 0 00000 0 001112222 2332 1234577999999999999999998652
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
+..++++||||+.++|..++++|..+.++|+|||..+.+|||-|++|+||++.
T Consensus 254 ---------------------------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 254 ---------------------------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred ---------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 12388999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCC
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCP 946 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~ 946 (2191)
.|+ +.+.|.|-+|||||.| .+.+|++++.+.+......++...-|
T Consensus 307 lP~----s~EsYyQE~GRAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 307 LPG----SIESYYQETGRAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred CCC----CHHHHHHHHhhccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 887 9999999999999999 79999999999988777777766544
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=321.68 Aligned_cols=333 Identities=20% Similarity=0.292 Sum_probs=260.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|-.+++..|++.||..|+++|..|||. ++.+-++||.|..|+|||++|.++.++.+.. ....++||+|||+||.|+
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~--~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI 109 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPA--IFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQI 109 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhh--hhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHH
Confidence 457899999999999999999999987 8999999999999999999999988887654 345899999999999999
Q ss_pred HHHHHHHhhc-cCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhH
Q 000107 587 AEHLEVLLEP-LGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~-lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~ 661 (2191)
.+.+.+++.. .|+++.++.|++.-.. -.+.++|+|+||+++..|+.. ....++.|+++|+||++.|.+ ..+..
T Consensus 110 ~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~sfq~ 187 (980)
T KOG4284|consen 110 KETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTESFQD 187 (980)
T ss_pred HHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchhhHHH
Confidence 9999988764 4889999999875322 224588999999999988865 666789999999999999998 46778
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-C-HHHHHHHhhcccc-cccccc---ccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-N-VAAVADWLQAALY-ETNFRP---VPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N-~~~la~wL~a~l~-~~~~Rp---vpL~e 735 (2191)
.+..|+..| +...|++++|||.| | ...+++++....+ ..+-+. +.++.
T Consensus 188 ~In~ii~sl--------------------------P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQ 241 (980)
T KOG4284|consen 188 DINIIINSL--------------------------PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQ 241 (980)
T ss_pred HHHHHHHhc--------------------------chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhh
Confidence 888888777 45679999999987 3 3456777775433 333333 33455
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCC
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~ 813 (2191)
|+..-.. ++.....++. .++.+.+++. +-.++||||+....|+.+|..|.. .+
T Consensus 242 yv~~~~s-~nnsveemrl--------------klq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s----sG------ 296 (980)
T KOG4284|consen 242 YVVAKCS-PNNSVEEMRL--------------KLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKS----SG------ 296 (980)
T ss_pred eeeeccC-CcchHHHHHH--------------HHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc----cC------
Confidence 5543222 1111111111 1122222332 235899999999999888877743 11
Q ss_pred CchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee
Q 000107 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 893 (2191)
Q Consensus 814 ~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~ 893 (2191)
+| |.++.|.|++.+|..+++.+|.-..+|||+|+..++|||-|.+.+||+
T Consensus 297 --------------------~d----------~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN 346 (980)
T KOG4284|consen 297 --------------------LD----------VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN 346 (980)
T ss_pred --------------------CC----------eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe
Confidence 12 788999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 894 QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 894 ~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.+.+. +-.+|.||+|||||.| ..|.++.+|...
T Consensus 347 iD~p~----d~eTY~HRIGRAgRFG--~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 347 IDAPA----DEETYFHRIGRAGRFG--AHGAAVTLLEDE 379 (980)
T ss_pred cCCCc----chHHHHHHhhhccccc--ccceeEEEeccc
Confidence 66654 7789999999999999 899999888764
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=348.40 Aligned_cols=357 Identities=24% Similarity=0.317 Sum_probs=274.3
Q ss_pred CCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CEEEEEchhHHHHH
Q 000107 506 SSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG-KMALLVLPYVSICA 584 (2191)
Q Consensus 506 ~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g-~kaL~I~P~raLA~ 584 (2191)
..+.+..+...+.+.|+..||.+|.+|+.. +.+|+|+||+.|||||||.+|.+||+.+++... .++|||.||+|||+
T Consensus 52 ~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~--~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 52 PELRDESLKSALVKAGIERLYSHQVDALRL--IREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAN 129 (851)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHH--HHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHh
Confidence 334556678888899999999999999987 899999999999999999999999999998743 47899999999999
Q ss_pred HHHHHHHHHhhccC--CeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhc-C-CCCccceEEEcccccccc
Q 000107 585 EKAEHLEVLLEPLG--RHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEE-G-RLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 585 q~~~~l~~l~~~lg--~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~-~-~L~~l~lVVIDEaH~l~d 656 (2191)
.+.++|.++...++ +.+..|.|+..... ....++|+++||.+++.++.+.... . .+.++++|||||+|-...
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998887 77888889886543 3567899999999999854332111 1 357799999999999765
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccc----cccccccc
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALY----ETNFRPVP 732 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~----~~~~Rpvp 732 (2191)
.+|..+-.++.+|+.+... .+.++|+|++|||+.|+.+++.-+....| ..+..|-.
T Consensus 210 -v~GS~vA~llRRL~~~~~~-------------------~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~ 269 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRR-------------------YGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRG 269 (851)
T ss_pred -cchhHHHHHHHHHHHHHhc-------------------cCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCC
Confidence 4899999999999988653 24678999999999998887765544333 23334444
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
...++.....++..... ........+..++...+.++-++|+|+.+++.++.+.......+...+.
T Consensus 270 ~~~~~~~~p~~~~~~~~----------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~---- 335 (851)
T COG1205 270 LRYFVRREPPIRELAES----------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGG---- 335 (851)
T ss_pred ceEEEEeCCcchhhhhh----------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcch----
Confidence 44444333222211111 0112233445566667788999999999999999887555443322110
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
-+..-|..|||+|..++|..++..|+.|.+.++++|++++.||||-++..||
T Consensus 336 ----------------------------~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi 387 (851)
T COG1205 336 ----------------------------KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI 387 (851)
T ss_pred ----------------------------hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh
Confidence 0122388899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
....++. +..+++||+|||||.+ ..+..+.+...
T Consensus 388 ~~g~P~~---s~~~~~Q~~GRaGR~~--~~~l~~~v~~~ 421 (851)
T COG1205 388 AYGYPGV---SVLSFRQRAGRAGRRG--QESLVLVVLRS 421 (851)
T ss_pred hcCCCCc---hHHHHHHhhhhccCCC--CCceEEEEeCC
Confidence 8777652 5678999999999998 56666666654
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=353.62 Aligned_cols=310 Identities=14% Similarity=0.242 Sum_probs=220.5
Q ss_pred HHHHHHcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 514 CSIYKKRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 514 ~~~l~~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
.+.....+| ++++.|.+||+. ++.+ +|++++||||+|||.+|..+++..+ ..+++++|++||++||.|++
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~--il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINA--VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-ENHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHH--HHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHH
Confidence 344455777 799999999986 6665 8999999999999999988877655 46889999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.|.+++..+++++..+.|..+... + ...++|+|+||+. ++ ....+.++++|||||+|+++..
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l----L~---~~v~~~~L~lLVIDEahrfG~~-- 737 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL----LQ---SDVKWKDLGLLIVDEEHRFGVR-- 737 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH----Hh---CCCCHhhCCEEEEechhhcchh--
Confidence 9999988888888888877654311 1 2357999999963 22 2335788999999999997421
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-CHHHHHHH-hh-ccccc-cccccccceE
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-NVAAVADW-LQ-AALYE-TNFRPVPLEE 735 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N~~~la~w-L~-a~l~~-~~~RpvpL~e 735 (2191)
.. .+++.+ ..++|+++||||+. ....++.. +. ...+. ......+++.
T Consensus 738 ---~~---e~lk~l-----------------------~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~ 788 (1147)
T PRK10689 738 ---HK---ERIKAM-----------------------RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 (1147)
T ss_pred ---HH---HHHHhc-----------------------CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceE
Confidence 11 222221 35689999999953 22222211 11 11111 0111112222
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.. +. .......++.++ ..+++++||||++..++.++..|.+.++.
T Consensus 789 ~~~~----~~------------------~~~~k~~il~el-~r~gqv~vf~n~i~~ie~la~~L~~~~p~---------- 835 (1147)
T PRK10689 789 FVRE----YD------------------SLVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPE---------- 835 (1147)
T ss_pred EEEe----cC------------------cHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCC----------
Confidence 2110 00 000111222333 35789999999999999998888654321
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
.+|+.+||+|++++|..++..|++|+++|||||+++++|||+|++++||-.
T Consensus 836 ----------------------------~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~- 886 (1147)
T PRK10689 836 ----------------------------ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE- 886 (1147)
T ss_pred ----------------------------CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe-
Confidence 248889999999999999999999999999999999999999999988721
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
..+.++..+|.||+||+||.| ..|.||+++.+
T Consensus 887 --~ad~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~ 918 (1147)
T PRK10689 887 --RADHFGLAQLHQLRGRVGRSH--HQAYAWLLTPH 918 (1147)
T ss_pred --cCCCCCHHHHHHHhhccCCCC--CceEEEEEeCC
Confidence 111235678999999999999 79999999865
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=336.07 Aligned_cols=427 Identities=20% Similarity=0.220 Sum_probs=305.1
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC--EEEEEchhHHHHHHHHHHHH-HHhhccCCeE
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK--MALLVLPYVSICAEKAEHLE-VLLEPLGRHV 601 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~--kaL~I~P~raLA~q~~~~l~-~l~~~lg~~V 601 (2191)
.+..+.+.+.. +.++++++|+|.||+|||+.....+|......|+ ++++..|+|--|..+++++. +.....|-.|
T Consensus 174 a~~~r~~Il~~--i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDA--IEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHH--HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 35567777765 8899999999999999999999999998766544 78999999999999998874 4444455444
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
+.-.+ -.......+.+.+||.+. |++++.....+..+++||+||+|+ |+...+.+|..++....+
T Consensus 252 GYqvr--l~~~~s~~t~L~fcTtGv---LLr~L~~~~~l~~vthiivDEVHE-----R~i~~DflLi~lk~lL~~----- 316 (924)
T KOG0920|consen 252 GYQVR--LESKRSRETRLLFCTTGV---LLRRLQSDPTLSGVTHIIVDEVHE-----RSINTDFLLILLKDLLPR----- 316 (924)
T ss_pred eEEEe--eecccCCceeEEEecHHH---HHHHhccCcccccCceeeeeeEEE-----ccCCcccHHHHHHHHhhh-----
Confidence 42222 222344458999999999 566666678899999999999999 666677777777665432
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc-cccccccccccceEEEEec---cccccch--hhH---HH
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVG---NAIYSKK--MDV---VR 752 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a-~l~~~~~RpvpL~e~i~~~---~~~~~~~--~~~---~r 752 (2191)
++++++|+||||+ |++.+.+|++. .+.....|..|+.+++.-+ ...|... ... .+
T Consensus 317 ---------------~p~LkvILMSAT~-dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~ 380 (924)
T KOG0920|consen 317 ---------------NPDLKVILMSATL-DAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPER 380 (924)
T ss_pred ---------------CCCceEEEeeeec-chHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhccccccccccccccc
Confidence 4889999999998 68999998874 4455566666665443200 0000000 000 00
Q ss_pred H----H-HHhhccCCCChhHHHHHHHHHHhc--CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHH
Q 000107 753 T----I-LTAANLGGKDPDHIVELCDEVVQE--GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAID 825 (2191)
Q Consensus 753 ~----l-~~~~~~~~~d~d~l~~Ll~e~~~~--g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~ 825 (2191)
. . .... ....+.+.+..++..+... .+.+|||.|+..++..+...|.........
T Consensus 381 ~~~~~~~~~~~-~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------- 442 (924)
T KOG0920|consen 381 SQLRLARLKLW-EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------- 442 (924)
T ss_pred Cccccccchhc-cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-----------------
Confidence 0 0 0000 0123455666666665543 489999999999998888877543211100
Q ss_pred HhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC--------
Q 000107 826 ALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-------- 897 (2191)
Q Consensus 826 ~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~-------- 897 (2191)
..+-|..+|+.|+..|++.|+.....|..+||+||++++++|+||++.+|||+...
T Consensus 443 ----------------~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~ 506 (924)
T KOG0920|consen 443 ----------------LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPE 506 (924)
T ss_pred ----------------cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeeccc
Confidence 12238889999999999999999999999999999999999999999999996542
Q ss_pred ------CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhc-cCCCCcccccccccchhhHHHHHHHhcc
Q 000107 898 ------GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLN-ESCPPLHSCLSEDKNGMTHAILEVVAGG 970 (2191)
Q Consensus 898 ------g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~-~~l~~l~S~L~~~~~~l~~~iLeiia~g 970 (2191)
-..|++.+...||.|||||.. .|.||.+++...+.. ++. .++|.+ .+..|+-++..
T Consensus 507 ~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~~~~~~~---~~~~~q~PEi-----------lR~pL~~l~L~ 569 (924)
T KOG0920|consen 507 RKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYTRSRYEK---LMLAYQLPEI-----------LRTPLEELCLH 569 (924)
T ss_pred CCcchhheeeccccchHHhcccccCcc---CCeeEEeechhhhhh---cccccCChHH-----------HhChHHHhhhe
Confidence 124788889999999999997 999999999865544 333 344433 22334333333
Q ss_pred c-ccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHH
Q 000107 971 I-VQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLD 1046 (2191)
Q Consensus 971 i-~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~ 1046 (2191)
+ +....++..|++..+-.+.. .++..|+..|.+.|++..++ ++|+||+.++..|++|..+++++-
T Consensus 570 iK~l~~~~~~~fLskaldpP~~------~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~ 635 (924)
T KOG0920|consen 570 IKVLEQGSIKAFLSKALDPPPA------DAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLF 635 (924)
T ss_pred eeeccCCCHHHHHHHhcCCCCh------HHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhhee
Confidence 2 34556777888766655542 57789999999999997544 699999999999999998887543
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=303.75 Aligned_cols=346 Identities=20% Similarity=0.285 Sum_probs=265.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.++..+...||++|+.+|+.||.+ +..|.|+++.+++|+|||.+|.+++++.+-. ....+++++|+++||.|.
T Consensus 33 L~e~LLrgiy~yGFekPSaIQqraI~p--~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi 110 (397)
T KOG0327|consen 33 LKESLLRGIYAYGFEKPSAIQQRAILP--CIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQI 110 (397)
T ss_pred CCHHHHhHHHhhccCCchHHHhccccc--cccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHH
Confidence 678999999999999999999999987 8999999999999999999999999987643 234789999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC-----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG-----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~-----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
......++...+.+|....|+.... .....++|+|+||+++..++++ .....+.+.++|+||++++...++-.
T Consensus 111 ~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs~gfkd 188 (397)
T KOG0327|consen 111 QKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLSRGFKD 188 (397)
T ss_pred HHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhccchHH
Confidence 9988988888888988877765432 1334589999999999999886 45567789999999999999888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEEEEec
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~i~~~ 740 (2191)
.++.++..+ +.+.|++++|||+|. +..+.+-+... |....++..
T Consensus 189 qI~~if~~l--------------------------p~~vQv~l~SAT~p~~vl~vt~~f~~~---------pv~i~vkk~ 233 (397)
T KOG0327|consen 189 QIYDIFQEL--------------------------PSDVQVVLLSATMPSDVLEVTKKFMRE---------PVRILVKKD 233 (397)
T ss_pred HHHHHHHHc--------------------------CcchhheeecccCcHHHHHHHHHhccC---------ceEEEecch
Confidence 888887776 567899999999984 44444322211 111222211
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhh
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~ 820 (2191)
.. ..+-++.++.... ...+.+.+..+.. .-.+.+|||||++.+..+...|..
T Consensus 234 ~l----tl~gikq~~i~v~-k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~------------------- 285 (397)
T KOG0327|consen 234 EL----TLEGIKQFYINVE-KEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRA------------------- 285 (397)
T ss_pred hh----hhhheeeeeeecc-ccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhh-------------------
Confidence 10 0000001110000 1113333444333 456899999999998888777732
Q ss_pred HHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCc
Q 000107 821 TSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRD 900 (2191)
Q Consensus 821 ~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~ 900 (2191)
.++-+...|+.|.+.+|+.+...|+.|..+|||.|..+++|+|+-.+..||++..|.
T Consensus 286 ---------------------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~-- 342 (397)
T KOG0327|consen 286 ---------------------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA-- 342 (397)
T ss_pred ---------------------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc--
Confidence 123388899999999999999999999999999999999999999999999988876
Q ss_pred ccCcccccccccccCCCCCCCceEEEEEeChhhHHHH---HhhhccCCCCc
Q 000107 901 FIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI---MGLLNESCPPL 948 (2191)
Q Consensus 901 ~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~---~~ll~~~l~~l 948 (2191)
...+|.||+||+||.| .+|.++.+++..+...+ .++.+-+++.+
T Consensus 343 --~~~~yihR~gr~gr~g--rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 343 --RKENYIHRIGRAGRFG--RKGVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred --chhhhhhhcccccccC--CCceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 7889999999999999 89999999998665443 44555444433
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=302.70 Aligned_cols=341 Identities=18% Similarity=0.238 Sum_probs=265.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAE 585 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q 585 (2191)
|...+..++.+.||+.|+|+|++.+|. ++++++++-.|-||||||.+|.+||++.+.. .|.+++++.|+++||.|
T Consensus 28 L~~~v~raI~kkg~~~ptpiqRKTipl--iLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 28 LDYKVLRAIHKKGFNTPTPIQRKTIPL--ILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred CCHHHHHHHHHhhcCCCCchhcccccc--eeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 668899999999999999999999988 9999999999999999999999999998875 45799999999999999
Q ss_pred HHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 586 KAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 586 ~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
..+.++.+....+++...++|+.... .+..++|||++||+++..+.-.+ ...|+.+.+||+||++.|.+.++..
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrlfemgfqe 183 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRLFEMGFQE 183 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHHHhhhhHH
Confidence 99999999888888888777765332 25567899999999987665542 2578999999999999999998988
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEecc
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGN 741 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~ 741 (2191)
.+..+++++ +...|.++||||+|+ ++.+|-.+.+..+.. ..+.++.
T Consensus 184 ql~e~l~rl--------------------------~~~~QTllfSatlp~--~lv~fakaGl~~p~l------VRldvet 229 (529)
T KOG0337|consen 184 QLHEILSRL--------------------------PESRQTLLFSATLPR--DLVDFAKAGLVPPVL------VRLDVET 229 (529)
T ss_pred HHHHHHHhC--------------------------CCcceEEEEeccCch--hhHHHHHccCCCCce------EEeehhh
Confidence 898888887 345599999999984 666676666543221 1122222
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
.+-. .+.. .............+..++..... ..+++|||+|+..+|.+...+..
T Consensus 230 kise----~lk~-~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~-------------------- 283 (529)
T KOG0337|consen 230 KISE----LLKV-RFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRD-------------------- 283 (529)
T ss_pred hcch----hhhh-heeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHh--------------------
Confidence 1111 0000 00000001122233334433332 35899999999998876655533
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcc
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~ 901 (2191)
.++++..++|.|.+..|..-...|+.++..+||.|+++++|+|+|-..-||+++.+.
T Consensus 284 --------------------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~--- 340 (529)
T KOG0337|consen 284 --------------------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPP--- 340 (529)
T ss_pred --------------------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCC---
Confidence 233477799999999999999999999999999999999999999999999988876
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHHh
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ 939 (2191)
+..-|.||+||+.|+| ..|.+|-++.+++..++.+
T Consensus 341 -~~klFvhRVgr~arag--rtg~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 341 -DDKLFVHRVGRVARAG--RTGRAYSLVASTDDPYLLD 375 (529)
T ss_pred -CCceEEEEecchhhcc--ccceEEEEEecccchhhhh
Confidence 5566999999999999 7999999998887666554
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=329.96 Aligned_cols=321 Identities=20% Similarity=0.245 Sum_probs=210.0
Q ss_pred HHHHHHH-cCCCCCCHHHHHhhhhcccccCC-eEEEEcCCCCchhHHHHHHHHHHHHh-c-CCEEEEEchhHHHHHHHHH
Q 000107 513 ICSIYKK-RGISKLYPWQVECLHVDGVLQRR-NLVYCASTSAGKSFVAEILMLRRLIS-T-GKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 513 l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gk-nlIi~APTGSGKTlvael~iL~~ll~-~-g~kaL~I~P~raLA~q~~~ 588 (2191)
+.+.|+. .||+ |||||.++++. ++.|+ ++++.+|||||||.++.++++..... . ..+.||++|+|+||.|+++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~--il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAER--FVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHH--HHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHH
Confidence 4455655 6997 99999999987 88887 67778999999999765544422111 1 2356678899999999999
Q ss_pred HHHHHhhcc-----------------------CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhh------
Q 000107 589 HLEVLLEPL-----------------------GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRML------ 635 (2191)
Q Consensus 589 ~l~~l~~~l-----------------------g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~------ 635 (2191)
.+.++...+ ++++..++|+.... .++.+++|+|+|++.+. ++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~---sr~L~~gYg~ 157 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG---SRLLFSGYGC 157 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc---CCcccccccc
Confidence 999887654 47788889987542 25567899999965432 2221
Q ss_pred -------hcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 636 -------EEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 636 -------~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
..+.+.++.+||+||+| .+.++...++.|+..+... . ...+.|+++||||
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp-~--------------------~~rprQtLLFSAT 214 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP-P--------------------DFLPLRVVELTAT 214 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC-c--------------------ccccceEEEEecC
Confidence 11236889999999999 3556777777777654100 0 0124799999999
Q ss_pred CCC-HHHHHHHhhccccc-cccc-cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH-HHhcCCcEEE
Q 000107 709 MPN-VAAVADWLQAALYE-TNFR-PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE-VVQEGHSVLI 784 (2191)
Q Consensus 709 L~N-~~~la~wL~a~l~~-~~~R-pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e-~~~~g~~vLV 784 (2191)
++. ..++...+....+. ...+ .+.......+ +..... ...+.+...+.. ....++++||
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~----v~v~~e-------------~Kl~~lv~~L~~ll~e~g~~vLV 277 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL----VPPSDE-------------KFLSTMVKELNLLMKDSGGAILV 277 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEE----EecChH-------------HHHHHHHHHHHHHHhhCCCcEEE
Confidence 974 44444443321110 0000 0000000000 000000 001111111111 2235689999
Q ss_pred EeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH-----
Q 000107 785 FCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE----- 859 (2191)
Q Consensus 785 F~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~----- 859 (2191)
||||++.|+.++..|.+. |+..+||+|++.+|+
T Consensus 278 F~NTv~~Aq~L~~~L~~~------------------------------------------g~~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 278 FCRTVKHVRKVFAKLPKE------------------------------------------KFELLTGTLRGAERDDLVKK 315 (844)
T ss_pred EECCHHHHHHHHHHHHhc------------------------------------------CCeEeeCCCCHHHHhhHHHH
Confidence 999999999999887431 136799999999999
Q ss_pred HHHHHhhc----CC-------ceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEE
Q 000107 860 VVETCYRK----GL-------VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 860 ~Ve~~Fr~----G~-------ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
.+++.|++ |. .+|||||+++++||||+.. +||+... +..+|+||+||+||.|....+.++++
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d-~VI~d~a------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISAD-HLVCDLA------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCcc-eEEECCC------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 78899987 54 6899999999999999984 5554332 46899999999999994333333333
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=312.78 Aligned_cols=303 Identities=18% Similarity=0.210 Sum_probs=198.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC------C----
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG------G---- 611 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~------~---- 611 (2191)
+++++||||||||++|++++++.+.. .+.+++|++|+++|+.|+++++..+++. .+..++|.... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchh
Confidence 47999999999999999999987654 4579999999999999999999987643 33333332210 0
Q ss_pred ----------C--CCCCCceEEEchHHHHHHHHHhhhc--CCCC--ccceEEEcccccccccchhHHHHHHHHHHHHhhc
Q 000107 612 ----------S--LPKDTSVAVCTIEKANSLVNRMLEE--GRLS--EIGIIVIDELHMVADQNRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 612 ----------~--l~~~~~IiV~TpEkl~~Ll~~l~~~--~~L~--~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~ 675 (2191)
. .....+|+|+||+++...+.+.... ..+. ..++|||||+|.+.+..++. +..++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~---- 152 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK---- 152 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH----
Confidence 0 0013579999999987655431111 0111 23899999999998765554 444444442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHH
Q 000107 676 EGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTIL 755 (2191)
Q Consensus 676 ~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~ 755 (2191)
..+.|+|+||||+| +.+.+|+............+.......... . +.
T Consensus 153 ---------------------~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~ 199 (358)
T TIGR01587 153 ---------------------DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERH----R------FI 199 (358)
T ss_pred ---------------------HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccc----c------ce
Confidence 13578999999997 456666643322111111111000000000 0 00
Q ss_pred HhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCC
Q 000107 756 TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLD 835 (2191)
Q Consensus 756 ~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld 835 (2191)
........+...+..++. ....++++||||+|++.|+.++..|.+...
T Consensus 200 ~~~~~~~~~~~~l~~l~~-~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~------------------------------- 247 (358)
T TIGR01587 200 KIESDKVGEISSLERLLE-FIKKGGKIAIIVNTVDRAQEFYQQLKENAP------------------------------- 247 (358)
T ss_pred eeccccccCHHHHHHHHH-HhhCCCeEEEEECCHHHHHHHHHHHHhhcC-------------------------------
Confidence 000000112333444443 334578999999999999999888865321
Q ss_pred hhhhhhcCCcEEEEcCCCCHHHHHHH----HHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccc
Q 000107 836 PVLEETLPSGVAYHHAGLTVEEREVV----ETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMA 911 (2191)
Q Consensus 836 ~~L~~~l~~GVa~hHagLs~~eR~~V----e~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~Qmi 911 (2191)
...+..+||+|++.+|..+ ++.|++|..+|||||+++++|||+|. .+||+.+. +..+|+||+
T Consensus 248 -------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~-~~vi~~~~------~~~~~iqr~ 313 (358)
T TIGR01587 248 -------EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISA-DVMITELA------PIDSLIQRL 313 (358)
T ss_pred -------CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCC-CEEEEcCC------CHHHHHHHh
Confidence 1138899999999999764 78899999999999999999999985 45554433 567899999
Q ss_pred cccCCCCCC--CceEEEEEeChh
Q 000107 912 GRAGRTGID--TKGESMLICKPE 932 (2191)
Q Consensus 912 GRAGR~G~d--~~Ge~ill~~~~ 932 (2191)
||+||.|.. ..|.+|++....
T Consensus 314 GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 314 GRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ccccCCCCCCCCCCeEEEEeecC
Confidence 999999854 235888887654
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=300.58 Aligned_cols=440 Identities=20% Similarity=0.225 Sum_probs=285.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~ 611 (2191)
+|..+..+||||.||||||+.....+...-.. .++.+-|..|+|-.|..++++...-+..+|-.|. |..+.++
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs--YqIRfd~ 344 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS--YQIRFDG 344 (1172)
T ss_pred HhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee--EEEEecc
Confidence 37788999999999999999988888765432 2457888999999999988887655555665554 3334445
Q ss_pred CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000107 612 SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSS 691 (2191)
Q Consensus 612 ~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~ 691 (2191)
....++.|.++|.+. |++.+..+..|..++.|||||+|+ |....+.++..|-++..-+..- +
T Consensus 345 ti~e~T~IkFMTDGV---LLrEi~~DflL~kYSvIIlDEAHE-----RSvnTDILiGmLSRiV~LR~k~---~------- 406 (1172)
T KOG0926|consen 345 TIGEDTSIKFMTDGV---LLREIENDFLLTKYSVIILDEAHE-----RSVNTDILIGMLSRIVPLRQKY---Y------- 406 (1172)
T ss_pred ccCCCceeEEecchH---HHHHHHHhHhhhhceeEEechhhh-----ccchHHHHHHHHHHHHHHHHHH---h-------
Confidence 566789999999998 566666778899999999999998 6666777666554332110000 0
Q ss_pred CCCCCCCCceEEEEeccCCCHHHHHHHh-hccc-------cccccccccceEEEEeccccccchhhHHHHHHHhhccCCC
Q 000107 692 GKADPAHGLQIVGMSATMPNVAAVADWL-QAAL-------YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK 763 (2191)
Q Consensus 692 ~~~~~~~~iqII~mSATL~N~~~la~wL-~a~l-------~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~ 763 (2191)
.....-.++++|+|||||. +.+|- +..+ ...+-|..|+.+++.-..
T Consensus 407 ke~~~~kpLKLIIMSATLR----VsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT---------------------- 460 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLR----VSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT---------------------- 460 (1172)
T ss_pred hhhcccCceeEEEEeeeEE----ecccccCceecCCCCceeeeecccCceEEEeccCC----------------------
Confidence 0001235789999999983 33333 2222 234455555555443111
Q ss_pred ChhHHHHHHHHHH-----hcCCcEEEEeCchhHHHHHHHHHHHHHhhcc--------ccc----CC---------CCchh
Q 000107 764 DPDHIVELCDEVV-----QEGHSVLIFCSSRKGCESTARHVSKFLKKFS--------INV----HS---------SDSEF 817 (2191)
Q Consensus 764 d~d~l~~Ll~e~~-----~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~--------~~~----~~---------~~~~~ 817 (2191)
..|.+.+..+.+. -+.+.+|||+....++..++..|.+.++..- ... .. +...+
T Consensus 461 ~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~df 540 (1172)
T KOG0926|consen 461 PDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDF 540 (1172)
T ss_pred CchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccc
Confidence 1122222222211 1457999999999999999999998754110 000 00 00000
Q ss_pred h--h-------hHH------------HHHHhhc---CCCCCC-hhhh-------------hhcCCcEEEEcCCCCHHHHH
Q 000107 818 I--D-------ITS------------AIDALRR---CPAGLD-PVLE-------------ETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 818 ~--~-------~~~------------~~~~L~~---~~~gld-~~L~-------------~~l~~GVa~hHagLs~~eR~ 859 (2191)
. + +.. ....+.. ...|.+ .... .+-+.-|.++|+=|+.+++.
T Consensus 541 e~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~ 620 (1172)
T KOG0926|consen 541 EEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQM 620 (1172)
T ss_pred hhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhh
Confidence 0 0 000 0000000 000110 0010 11123488999999999999
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCC--------------CcccCcccccccccccCCCCCCCceEE
Q 000107 860 VVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG--------------RDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 860 ~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g--------------~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
.|+..-..|..-++|||++++++++||++++||+.++.. -.|+|.++.-||+|||||.| .|.|
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCce
Confidence 999999999999999999999999999999999976421 24889999999999999999 9999
Q ss_pred EEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHH
Q 000107 926 MLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLR 1005 (2191)
Q Consensus 926 ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~ 1005 (2191)
|.+|+..-+.. .|-.-..|.|.+. -...++|.+-+-+ |.....+.|-. .|. ...++.|.+
T Consensus 698 YRLYSSAVf~~--~Fe~fS~PEIlk~------Pve~lvLqMKsMn-------I~kVvnFPFPt--pPd---~~~L~~Aer 757 (1172)
T KOG0926|consen 698 YRLYSSAVFSN--DFEEFSLPEILKK------PVESLVLQMKSMN-------IDKVVNFPFPT--PPD---RSALEKAER 757 (1172)
T ss_pred eehhhhHHhhc--chhhhccHHHhhC------cHHHHHHHHHhcC-------ccceecCCCCC--Ccc---HHHHHHHHH
Confidence 99999854331 1222234444332 1223456555444 23333333322 222 356788999
Q ss_pred HHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhh
Q 000107 1006 WLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSR 1050 (2191)
Q Consensus 1006 ~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~ 1050 (2191)
.|+..|++.. ++ .+|+||++++.+||+|..+++++-.-+.
T Consensus 758 ~L~~LgALd~--~g---~lT~lGk~mS~FPlsPrfsKmL~~~~Q~ 797 (1172)
T KOG0926|consen 758 RLKALGALDS--NG---GLTKLGKAMSLFPLSPRFSKMLATSDQH 797 (1172)
T ss_pred HHHHhccccc--cC---CcccccchhcccccChhHHHHHHHHHhh
Confidence 9999999963 32 6999999999999999999987765543
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=300.23 Aligned_cols=392 Identities=25% Similarity=0.366 Sum_probs=260.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccC-CeE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLG-RHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg-~~V 601 (2191)
.|..||.+.+.. +-.++.++|+|||++|||++...+|=+.+.. +.+.+||++|+++|++|....+...+.... .+.
T Consensus 511 ~Pd~WQ~elLDs--vDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 511 CPDEWQRELLDS--VDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred CCcHHHHHHhhh--hhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 577899999976 7789999999999999999987766554443 567899999999999999988877663221 122
Q ss_pred EEEeccCCCC--CCCCCCceEEEchHHHHHHHHH-hhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 602 RSYYGNQGGG--SLPKDTSVAVCTIEKANSLVNR-MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 602 ~~~~G~~~~~--~l~~~~~IiV~TpEkl~~Ll~~-l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
..+.|..... ..+-+++|+|+-||-+.+++.. -....+..++++||+||+|.+|...-|..+|.++-.+
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-------- 660 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-------- 660 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--------
Confidence 2233443221 1234689999999999998764 2244588999999999999999887788888777554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc---------ccccccc----------------cccc
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA---------LYETNFR----------------PVPL 733 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~---------l~~~~~R----------------pvpL 733 (2191)
+..++++|||++|+..+..|++.. +.....| .+++
T Consensus 661 --------------------~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl 720 (1330)
T KOG0949|consen 661 --------------------PCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYL 720 (1330)
T ss_pred --------------------CCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHH
Confidence 467999999999999999999821 1000000 0000
Q ss_pred eEEEEec------------------------------------------cccccc--------hhhHHHH---HHHh---
Q 000107 734 EEYIKVG------------------------------------------NAIYSK--------KMDVVRT---ILTA--- 757 (2191)
Q Consensus 734 ~e~i~~~------------------------------------------~~~~~~--------~~~~~r~---l~~~--- 757 (2191)
......+ ...|.. .....+. +...
T Consensus 721 ~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e 800 (1330)
T KOG0949|consen 721 LKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIE 800 (1330)
T ss_pred HHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhh
Confidence 0000000 000000 0000000 0000
Q ss_pred ----------------------hcc-CC----CChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 758 ----------------------ANL-GG----KDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 758 ----------------------~~~-~~----~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
... .. .-...++.++.++...+ -++|+|-..|..|+.+|..+...+......
T Consensus 801 ~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~E 880 (1330)
T KOG0949|consen 801 DSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEME 880 (1330)
T ss_pred cChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 00122455555555544 799999999999999988876554321111
Q ss_pred cCCCCchhh-----------hhHH---------------------------------------HHHHhhcCCCCCChhhh
Q 000107 810 VHSSDSEFI-----------DITS---------------------------------------AIDALRRCPAGLDPVLE 839 (2191)
Q Consensus 810 ~~~~~~~~~-----------~~~~---------------------------------------~~~~L~~~~~gld~~L~ 839 (2191)
. .. .+.. +... ..+.-.+.....+..+.
T Consensus 881 e-~k-~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~i 958 (1330)
T KOG0949|consen 881 E-KK-DKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFI 958 (1330)
T ss_pred h-HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHH
Confidence 0 00 0000 0000 00000111112466777
Q ss_pred hhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 840 ~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+++-+||++||+||+..+|..||-.||.|.+.||+||.||+-|||.|.++||+-.+.. .+++..|.||+|||||.|+
T Consensus 959 d~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL---QL~plny~QmaGRAGRRGF 1035 (1330)
T KOG0949|consen 959 DMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSL---QLDPLNYKQMAGRAGRRGF 1035 (1330)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecccc---ccCchhHHhhhcccccccc
Confidence 8888999999999999999999999999999999999999999999999999843332 2677899999999999999
Q ss_pred CCceEEEEEeChhhHHHHHhhhccCCCCccccc
Q 000107 920 DTKGESMLICKPEEVKKIMGLLNESCPPLHSCL 952 (2191)
Q Consensus 920 d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L 952 (2191)
|..|.++.+--|. .++.+++...+|.+.-..
T Consensus 1036 D~lGnV~FmgiP~--~kv~rLlts~L~diqG~~ 1066 (1330)
T KOG0949|consen 1036 DTLGNVVFMGIPR--QKVQRLLTSLLPDIQGAY 1066 (1330)
T ss_pred ccccceEEEeCcH--HHHHHHHHHhhhcccCCC
Confidence 9999999887664 456667777776665443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=306.63 Aligned_cols=311 Identities=14% Similarity=0.167 Sum_probs=205.1
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-EEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~-kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
..|+++|.++++. ++.+++.++++|||+|||+++... .+.+...++ ++||++|+++|+.|+.+++++++......+
T Consensus 113 ~~~r~~Q~~av~~--~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYE--GLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred CCCCHHHHHHHHH--HHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 4899999999976 788889999999999999987653 333333444 999999999999999999988654323334
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
..++|+... ..+.+|+|+||+++.... ..+++++++|||||+|++.. ..++.++..+
T Consensus 190 ~~i~~g~~~---~~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~----------- 246 (501)
T PHA02558 190 HKIYSGTAK---DTDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG----KSLTSIITKL----------- 246 (501)
T ss_pred eEEecCccc---CCCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc----hhHHHHHHhh-----------
Confidence 444444321 235789999999865432 23578899999999999864 3355555444
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHH----HHHHHhhcccccccc-------ccccceEE-EEeccccccch--
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVA----AVADWLQAALYETNF-------RPVPLEEY-IKVGNAIYSKK-- 747 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~----~la~wL~a~l~~~~~-------RpvpL~e~-i~~~~~~~~~~-- 747 (2191)
+...+++|||||+.+.. .+..++|...+.... ..++++.. +..........
T Consensus 247 ---------------~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~ 311 (501)
T PHA02558 247 ---------------DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKL 311 (501)
T ss_pred ---------------hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhh
Confidence 12357999999986422 123344422211100 00111110 01110000000
Q ss_pred -hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHH
Q 000107 748 -MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDA 826 (2191)
Q Consensus 748 -~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~ 826 (2191)
....................+..++......+.++||||.+.+.|+.++..|.+. +
T Consensus 312 ~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~----g------------------- 368 (501)
T PHA02558 312 KGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV----Y------------------- 368 (501)
T ss_pred cccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc----C-------------------
Confidence 0000000000000011223445555555566789999999999888887777541 1
Q ss_pred hhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEec-ccccccCCCCCceEEeecCCCCCcccCcc
Q 000107 827 LRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT-STLAAGVNLPARRVIFRQPRIGRDFIDGT 905 (2191)
Q Consensus 827 L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT-stLa~GVNLPav~VVI~~p~~g~~~is~~ 905 (2191)
..+..+||+++.++|..+++.|+.|...||||| +++++|+|+|.+.+||....+. +..
T Consensus 369 -----------------~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~----s~~ 427 (501)
T PHA02558 369 -----------------DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK----SKI 427 (501)
T ss_pred -----------------CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc----chh
Confidence 128889999999999999999999999999998 8999999999999888543322 667
Q ss_pred cccccccccCCCC
Q 000107 906 RYRQMAGRAGRTG 918 (2191)
Q Consensus 906 ~y~QmiGRAGR~G 918 (2191)
.|+||+||++|.+
T Consensus 428 ~~~QriGR~~R~~ 440 (501)
T PHA02558 428 IVLQSIGRVLRKH 440 (501)
T ss_pred hhhhhhhccccCC
Confidence 8999999999998
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=290.39 Aligned_cols=291 Identities=18% Similarity=0.178 Sum_probs=191.5
Q ss_pred HHHHhhhhcccccCC--eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc----CCeE
Q 000107 528 WQVECLHVDGVLQRR--NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL----GRHV 601 (2191)
Q Consensus 528 ~Q~eal~~~~il~gk--nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l----g~~V 601 (2191)
+|.++++. +.+++ +++++||||||||++|.++++. .+.+++|++|+++|+.++++.+..++..+ +..+
T Consensus 1 hQ~~~~~~--~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEA--LQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHH--HHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999986 77665 5899999999999999999885 35678999999999999999999887543 5566
Q ss_pred EEEeccCCCC--------------C----------CCCCCceEEEchHHHHHHHHHhhhcC------CCCccceEEEccc
Q 000107 602 RSYYGNQGGG--------------S----------LPKDTSVAVCTIEKANSLVNRMLEEG------RLSEIGIIVIDEL 651 (2191)
Q Consensus 602 ~~~~G~~~~~--------------~----------l~~~~~IiV~TpEkl~~Ll~~l~~~~------~L~~l~lVVIDEa 651 (2191)
..+.|..... . ....+.|+++||+.+..+++++.... .+..+++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652110 0 01246889999999998887653332 2578999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc------ccc-
Q 000107 652 HMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA------ALY- 724 (2191)
Q Consensus 652 H~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a------~l~- 724 (2191)
|.+.... ...+...+..+..+... ....++|+||||++. .+.++|.. .+.
T Consensus 155 H~~~~~~-~~~~~~~l~~~~~~~~~--------------------~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~ 211 (357)
T TIGR03158 155 HLYDAKQ-LVGMLFLLAYMQLIRFF--------------------ECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAP 211 (357)
T ss_pred cccCccc-chhhhhhhHHHHHHHhh--------------------hcCCcEEEEecCCCH--HHHHHHHhccccCceeee
Confidence 9987543 22222222222222110 124699999999864 33333321 110
Q ss_pred --cc-----------------ccccc--cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH--hcCCc
Q 000107 725 --ET-----------------NFRPV--PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV--QEGHS 781 (2191)
Q Consensus 725 --~~-----------------~~Rpv--pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~--~~g~~ 781 (2191)
.. .+||+ +++..+..... .... ....+.+.+.+.+ ..+++
T Consensus 212 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~--------------~l~~l~~~i~~~~~~~~~~k 274 (357)
T TIGR03158 212 IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPD---FKEE--------------ELSELAEEVIERFRQLPGER 274 (357)
T ss_pred ecCcccccCCChhhhccccccccceeccceEEEEEeCCc---hhHH--------------HHHHHHHHHHHHHhccCCCe
Confidence 00 12222 11111110000 0000 0111223333333 24679
Q ss_pred EEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHH
Q 000107 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVV 861 (2191)
Q Consensus 782 vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~V 861 (2191)
+||||+|++.|+.++..|.+.. ....+..+||.+++.+|..+
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~--------------------------------------~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG--------------------------------------LGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC--------------------------------------CCceEEeeecCCCHHHHHHh
Confidence 9999999999999998885421 11237789999999998654
Q ss_pred HHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccC
Q 000107 862 ETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAG 915 (2191)
Q Consensus 862 e~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAG 915 (2191)
+..+|||||+++++|||+|.+.||++ |. +..+|+||+||+|
T Consensus 317 ------~~~~iLVaTdv~~rGiDi~~~~vi~~-p~------~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ------MQFDILLGTSTVDVGVDFKRDWLIFS-AR------DAAAFWQRLGRLG 357 (357)
T ss_pred ------ccCCEEEEecHHhcccCCCCceEEEC-CC------CHHHHhhhcccCC
Confidence 47899999999999999999866652 32 7789999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=278.92 Aligned_cols=340 Identities=20% Similarity=0.286 Sum_probs=229.0
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
-+++.+|...... .+. +|.+++.|||-|||++|.+.|...+...++++|+++||+-|+.|.+..+.+.+.-..-.+.
T Consensus 14 ie~R~YQ~~i~a~--al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 14 IEPRLYQLNIAAK--ALF-KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccHHHHHHHHHHH--Hhh-cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3677788877654 333 4999999999999999999999888877779999999999999999999888754445677
Q ss_pred EEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHH-HHHhhcCCC
Q 000107 603 SYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTK-LRYAAGEGT 678 (2191)
Q Consensus 603 ~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~k-Lr~~~~~~~ 678 (2191)
.++|...... .....+|+|+||..+..=+.. +...+.++.|+|+||||+--.. +.+-.+... +++
T Consensus 91 ~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGn---yAYv~Va~~y~~~------ 159 (542)
T COG1111 91 ALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGN---YAYVFVAKEYLRS------ 159 (542)
T ss_pred eecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCc---chHHHHHHHHHHh------
Confidence 8888764321 234578999999986333322 4557889999999999995432 223223322 222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH---HHHHhhcccc------cccccc-----------ccceE--
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA---VADWLQAALY------ETNFRP-----------VPLEE-- 735 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~---la~wL~a~l~------~~~~Rp-----------vpL~e-- 735 (2191)
..++.|+|||||.++ .+. +.+-|+..-+ ..+.+| |++..
T Consensus 160 ------------------~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~ 221 (542)
T COG1111 160 ------------------AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEI 221 (542)
T ss_pred ------------------ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHH
Confidence 357899999999874 444 4444442210 112222 11100
Q ss_pred ----------------------EEEeccccccch-------------------hhH------------------------
Q 000107 736 ----------------------YIKVGNAIYSKK-------------------MDV------------------------ 750 (2191)
Q Consensus 736 ----------------------~i~~~~~~~~~~-------------------~~~------------------------ 750 (2191)
++.....+.... ...
T Consensus 222 ~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~ 301 (542)
T COG1111 222 KEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRP 301 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 000000000000 000
Q ss_pred ----HHHHHH------------------------------hhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHH
Q 000107 751 ----VRTILT------------------------------AANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCES 794 (2191)
Q Consensus 751 ----~r~l~~------------------------------~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~ 794 (2191)
+..+.. .......+.+++..++.+.+. .+..+|||++.|..++.
T Consensus 302 ~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~ 381 (542)
T COG1111 302 FYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEE 381 (542)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHH
Confidence 000000 001112345567777777773 44799999999999998
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEE
Q 000107 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874 (2191)
Q Consensus 795 lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLV 874 (2191)
++..|.+...... ..+++.+-.-+-.||++.++..+++.|+.|..+|||
T Consensus 382 i~~~L~~~~~~~~-------------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLV 430 (542)
T COG1111 382 IVNFLKKIGIKAR-------------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLV 430 (542)
T ss_pred HHHHHHhcCCcce-------------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEE
Confidence 8888765432211 112333333456899999999999999999999999
Q ss_pred ecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 875 ATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 875 ATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|||+.+.|+|||.+.+||-+.... |.-.++||.||+||.. .|.+++++...
T Consensus 431 aTSVgEEGLDIp~vDlVifYEpvp----SeIR~IQR~GRTGR~r---~Grv~vLvt~g 481 (542)
T COG1111 431 ATSVGEEGLDIPEVDLVIFYEPVP----SEIRSIQRKGRTGRKR---KGRVVVLVTEG 481 (542)
T ss_pred EcccccccCCCCcccEEEEecCCc----HHHHHHHhhCccccCC---CCeEEEEEecC
Confidence 999999999999999998665433 6668999999999985 89999988775
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=313.82 Aligned_cols=306 Identities=21% Similarity=0.222 Sum_probs=194.8
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
.++.+.|++ .|+ +|+++|.++++. ++.|+|++++||||+|||+.+ ++++..+...+.+++||+||++||.|+++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~--il~g~dv~i~ApTGsGKT~f~-l~~~~~l~~~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKR--LLLGESFAIIAPTGVGKTTFG-LVMSLYLAKKGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHH--HHCCCcEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEEeccHHHHHHHHHH
Confidence 345556655 477 899999999987 899999999999999999744 455555555788999999999999999999
Q ss_pred HHHHhhccCCeEEEEeccCCC-----C----C-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 590 LEVLLEPLGRHVRSYYGNQGG-----G----S-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~-----~----~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
++.++...++.+..++|+... . . ...+++|+|+||+++..++.. .....+++|||||+|.+.++++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhccc
Confidence 999988888887777665421 0 0 124589999999998776542 2345699999999999987433
Q ss_pred h------------HHHHHHHHHHHHhhcCCCCCCCCCCC-CC-CCCCCCCCCCCceEEEEeccCCC--HHH--HHHHhhc
Q 000107 660 G------------YLLELLLTKLRYAAGEGTSDSSSGEN-SG-TSSGKADPAHGLQIVGMSATMPN--VAA--VADWLQA 721 (2191)
Q Consensus 660 G------------~~lE~lL~kLr~~~~~~~~~s~~~~~-~~-~~~~~~~~~~~iqII~mSATL~N--~~~--la~wL~a 721 (2191)
+ ..++.++..++.-... ...++. .. ............|++++|||++. ... +.+.++
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~----~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~- 293 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKY----EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG- 293 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhccccccc----chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce-
Confidence 2 3455555444210000 000000 00 00000000126799999999863 111 112111
Q ss_pred cccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhH---HHHHHHH
Q 000107 722 ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKG---CESTARH 798 (2191)
Q Consensus 722 ~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~---~e~lA~~ 798 (2191)
|........+.. +.............+..++.. .+.++||||++++. |+.++..
T Consensus 294 --~~v~~~~~~~rn------------------I~~~yi~~~~k~~~L~~ll~~---l~~~~LIFv~t~~~~~~ae~l~~~ 350 (1176)
T PRK09401 294 --FEVGSPVFYLRN------------------IVDSYIVDEDSVEKLVELVKR---LGDGGLIFVPSDKGKEYAEELAEY 350 (1176)
T ss_pred --EEecCcccccCC------------------ceEEEEEcccHHHHHHHHHHh---cCCCEEEEEecccChHHHHHHHHH
Confidence 110000000000 000000000112234444432 24689999999887 7777766
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe---
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA--- 875 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA--- 875 (2191)
|... + ..+..+||+| +| . ++.|++|.++||||
T Consensus 351 L~~~----g------------------------------------i~v~~~hg~l---~~-~-l~~F~~G~~~VLVatas 385 (1176)
T PRK09401 351 LEDL----G------------------------------------INAELAISGF---ER-K-FEKFEEGEVDVLVGVAS 385 (1176)
T ss_pred HHHC----C------------------------------------CcEEEEeCcH---HH-H-HHHHHCCCCCEEEEecC
Confidence 6431 1 2378899999 23 3 49999999999999
Q ss_pred -cccccccCCCCC-ceEEeecCCC
Q 000107 876 -TSTLAAGVNLPA-RRVIFRQPRI 897 (2191)
Q Consensus 876 -TstLa~GVNLPa-v~VVI~~p~~ 897 (2191)
|++++||||+|+ +++||+++.|
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCC
Confidence 689999999999 7999886443
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=270.10 Aligned_cols=417 Identities=20% Similarity=0.279 Sum_probs=289.5
Q ss_pred HHHHHHHHHcCCCCCCHHHH-HhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQV-ECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~-eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
....++|+++- .|--|+. +-+- ..+..++.++++|.||||||+......+...+.....+.+..|.|.-|.+++.+
T Consensus 34 ~rY~~ilk~R~--~LPvw~~k~~F~-~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~R 110 (699)
T KOG0925|consen 34 QRYYDILKKRR--ELPVWEQKEEFL-KLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQR 110 (699)
T ss_pred HHHHHHHHHHh--cCchHHhHHHHH-HHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHH
Confidence 66777877652 3444433 3332 236789999999999999999988888887777678899999999999999877
Q ss_pred HHHHhh-ccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHH
Q 000107 590 LEVLLE-PLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLT 668 (2191)
Q Consensus 590 l~~l~~-~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~ 668 (2191)
...-.. .+|..|+ |....+.-...++-+-+||.+. |++..+....+..+++||+||+|+ |....+.++.
T Consensus 111 VadEMDv~lG~EVG--ysIrfEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahE-----RtlATDiLmG 180 (699)
T KOG0925|consen 111 VADEMDVTLGEEVG--YSIRFEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMG 180 (699)
T ss_pred HHHHhccccchhcc--ccccccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhhh-----hhHHHHHHHH
Confidence 654322 2333332 2222222233445567888887 677888889999999999999998 8888889988
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc-cccccccccccceEEEEeccccccch
Q 000107 669 KLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 669 kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a-~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
.|+.+..+ .+++++|.||||+ +...+..|++. .+..... ..|++.++...
T Consensus 181 llk~v~~~--------------------rpdLk~vvmSatl-~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e------- 231 (699)
T KOG0925|consen 181 LLKEVVRN--------------------RPDLKLVVMSATL-DAEKFQRYFGNAPLLAVPG-THPVEIFYTPE------- 231 (699)
T ss_pred HHHHHHhh--------------------CCCceEEEeeccc-chHHHHHHhCCCCeeecCC-CCceEEEecCC-------
Confidence 88887643 4689999999997 67778777764 4443322 33444433211
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHH---H--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEV---V--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~---~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
...|.+...++.+ . .+.+.+|||.++..+.+..++.|.......+..
T Consensus 232 ---------------~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~------------- 283 (699)
T KOG0925|consen 232 ---------------PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQ------------- 283 (699)
T ss_pred ---------------CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccc-------------
Confidence 1112222222222 1 235899999999999999999987654333211
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhh---cC--CceEEEecccccccCCCCCceEEeecC--
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR---KG--LVRVLTATSTLAAGVNLPARRVIFRQP-- 895 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr---~G--~ikVLVATstLa~GVNLPav~VVI~~p-- 895 (2191)
.-+-.|.++| +.++..|++... +| ..+|+|+|++++..+.++++.+||+.+
T Consensus 284 ------------------~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~ 341 (699)
T KOG0925|consen 284 ------------------VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFS 341 (699)
T ss_pred ------------------cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchh
Confidence 1122377777 445555554443 23 359999999999999999999999843
Q ss_pred -------CCC-----CcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCc-ccccccccchhhHH
Q 000107 896 -------RIG-----RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL-HSCLSEDKNGMTHA 962 (2191)
Q Consensus 896 -------~~g-----~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l-~S~L~~~~~~l~~~ 962 (2191)
++. ..+||..+..||+|||||.. +|.|+.+|+.+-+.+ ++.....|.+ +| ++...
T Consensus 342 kqkVYNPRIRvesllv~PISkasA~qR~gragrt~---pGkcfrLYte~~~~~--em~~~typeilrs-------NL~s~ 409 (699)
T KOG0925|consen 342 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEEAFEK--EMQPQTYPEILRS-------NLSST 409 (699)
T ss_pred hhcccCcceeeeeeeeccchHhHHHHHhhhccCCC---CCceEEeecHHhhhh--cCCCCCcHHHHHH-------hhHHH
Confidence 322 23688889999999999986 999999999864332 2222222322 22 34455
Q ss_pred HHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHH
Q 000107 963 ILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESL 1042 (2191)
Q Consensus 963 iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~ 1042 (2191)
+|.+--.| |.+...|.|++++.| +.+..||+.|....++. .++ .+|++|+.++.+||+|..|+
T Consensus 410 VL~LKklg-------I~dlvhfdfmDpPAP-----EtLMrALE~LnYLaaLd--DdG---nLT~lG~imSEFPLdPqLAk 472 (699)
T KOG0925|consen 410 VLQLKKLG-------IDDLVHFDFMDPPAP-----ETLMRALEVLNYLAALD--DDG---NLTSLGEIMSEFPLDPQLAK 472 (699)
T ss_pred HHHHHhcC-------cccccCCcCCCCCCh-----HHHHHHHHHhhhhhhhC--CCc---ccchhhhhhhcCCCChHHHH
Confidence 67665555 456677889988887 67778888888888884 333 59999999999999999999
Q ss_pred HHHHHH
Q 000107 1043 IVLDDL 1048 (2191)
Q Consensus 1043 ~l~~~L 1048 (2191)
+++...
T Consensus 473 mLi~S~ 478 (699)
T KOG0925|consen 473 MLIGSC 478 (699)
T ss_pred HHhhcC
Confidence 988754
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=309.12 Aligned_cols=335 Identities=23% Similarity=0.312 Sum_probs=252.1
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
|-.+.+..+...+|...++|-|.++|.. ++.|++.++.+|||+||++||.+|++- .++..|+|.|.++|...+.
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~--~l~Gkd~fvlmpTG~GKSLCYQlPA~l----~~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINA--TLSGKDCFVLMPTGGGKSLCYQLPALL----LGGVTVVISPLISLMQDQV 321 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHH--HHcCCceEEEeecCCceeeEeeccccc----cCCceEEeccHHHHHHHHH
Confidence 3334444444568999999999999986 999999999999999999999999864 3668999999999999988
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC-------C---CCCCceEEEchHHHHHHHHHhhhcCCCCc---cceEEEcccccc
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS-------L---PKDTSVAVCTIEKANSLVNRMLEEGRLSE---IGIIVIDELHMV 654 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~-------l---~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~---l~lVVIDEaH~l 654 (2191)
..+. ..++....+.++..... + ....+|+..|||++...-+-......+.. +.++||||||++
T Consensus 322 ~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 322 THLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred Hhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 7663 34777777777665421 1 12579999999997543211111223334 899999999999
Q ss_pred cccc--hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhc---cccccc
Q 000107 655 ADQN--RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQA---ALYETN 727 (2191)
Q Consensus 655 ~d~~--RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a---~l~~~~ 727 (2191)
..|+ |.+.+..+- .++.. .+.+.+|+||||.+- .+++.+-|+- .++...
T Consensus 398 SqWgHdFRp~Yk~l~-~l~~~-----------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s 453 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLG-LLRIR-----------------------FPGVPFIALTATATERVREDVIRSLGLRNPELFKSS 453 (941)
T ss_pred hhhcccccHHHHHHH-HHHhh-----------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc
Confidence 9885 344443332 22211 244899999999752 5677777763 356666
Q ss_pred cccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH--HHhcCCcEEEEeCchhHHHHHHHHHHHHHhh
Q 000107 728 FRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE--VVQEGHSVLIFCSSRKGCESTARHVSKFLKK 805 (2191)
Q Consensus 728 ~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e--~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~ 805 (2191)
|.+..+...|..... .+.+..++.. ....+.+.||||.+|++|+.++..|.+..
T Consensus 454 fnR~NL~yeV~~k~~----------------------~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~-- 509 (941)
T KOG0351|consen 454 FNRPNLKYEVSPKTD----------------------KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG-- 509 (941)
T ss_pred CCCCCceEEEEeccC----------------------ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc--
Confidence 666665555443221 1111111111 12356899999999999999999887633
Q ss_pred cccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 000107 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNL 885 (2191)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNL 885 (2191)
...++||+||+..+|..|..+|-.++++|+|||=.+.+|||.
T Consensus 510 --------------------------------------~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 510 --------------------------------------KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred --------------------------------------hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 126789999999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccC
Q 000107 886 PARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944 (2191)
Q Consensus 886 Pav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~ 944 (2191)
|+||.||++..+. +.+.|.|-+|||||.| ....|++++...+...+..++...
T Consensus 552 ~DVR~ViH~~lPk----s~E~YYQE~GRAGRDG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 552 PDVRFVIHYSLPK----SFEGYYQEAGRAGRDG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CceeEEEECCCch----hHHHHHHhccccCcCC--CcceeEEecchhHHHHHHHHHHcc
Confidence 9999999998887 8999999999999999 689999999999988888888766
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=284.93 Aligned_cols=343 Identities=20% Similarity=0.300 Sum_probs=224.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
-.|+.+|.+.+.. .+ |+|+||++|||+|||++|...|++++.. .+.++|+++|++-|+.|+...+..++.+ ..+
T Consensus 61 ~~lR~YQ~eivq~--AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQP--AL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred ccccHHHHHHhHH--hh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 4789999999986 55 9999999999999999999999988764 5679999999999999999777776654 455
Q ss_pred EEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 602 RSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 602 ~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.+..|+.... .+....+|+|+||..+..-+.+.... .|+.+.++||||+|.-.. .+.+-.++..+.+..
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~-~ls~fs~iv~DE~Hra~k---n~~Y~~Vmr~~l~~k--- 208 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD-ELSDFSLIVFDECHRTSK---NHPYNNIMREYLDLK--- 208 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc-ccceEEEEEEcccccccc---cccHHHHHHHHHHhh---
Confidence 5555554221 23346899999999976655543222 278899999999999653 233445554444332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhc---cc---------------cccccccccceEEE-
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQA---AL---------------YETNFRPVPLEEYI- 737 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a---~l---------------~~~~~RpvpL~e~i- 737 (2191)
....||||||||+++ .+.+...+.. .+ -.....|+++....
T Consensus 209 -------------------~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~ 269 (746)
T KOG0354|consen 209 -------------------NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCER 269 (746)
T ss_pred -------------------hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhh
Confidence 123499999999884 4444444431 10 01111122211000
Q ss_pred -----------------------Ee--cccccc-----------------ch--hh---------------HHH---HHH
Q 000107 738 -----------------------KV--GNAIYS-----------------KK--MD---------------VVR---TIL 755 (2191)
Q Consensus 738 -----------------------~~--~~~~~~-----------------~~--~~---------------~~r---~l~ 755 (2191)
.. ....|. .. .. .++ .+.
T Consensus 270 ~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~ 349 (746)
T KOG0354|consen 270 DIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALD 349 (746)
T ss_pred hhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHh
Confidence 00 000000 00 00 000 000
Q ss_pred ------------H----h----------------------hccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHH
Q 000107 756 ------------T----A----------------------ANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCEST 795 (2191)
Q Consensus 756 ------------~----~----------------------~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~l 795 (2191)
+ . ..........+.+.+.+... ....+||||.+|..+..+
T Consensus 350 ~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l 429 (746)
T KOG0354|consen 350 YLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALAL 429 (746)
T ss_pred hhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHH
Confidence 0 0 00001122233344444333 236899999999999888
Q ss_pred HHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe
Q 000107 796 ARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875 (2191)
Q Consensus 796 A~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA 875 (2191)
...|.+ +...+... ..+++.|-.---.||++.++..+++.|+.|.++||||
T Consensus 430 ~~~l~~-~~~~~ir~----------------------------~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVA 480 (746)
T KOG0354|consen 430 KKWLLQ-LHELGIKA----------------------------EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVA 480 (746)
T ss_pred HHHHHh-hhhccccc----------------------------ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEE
Confidence 888765 22221111 0123333333337999999999999999999999999
Q ss_pred cccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 876 TSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 876 TstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|++++.|+||+.+.+||.++... +....+||.|| ||+. .|+|+++++..+
T Consensus 481 TSV~EEGLDI~ec~lVIcYd~~s----npIrmIQrrGR-gRa~---ns~~vll~t~~~ 530 (746)
T KOG0354|consen 481 TSVAEEGLDIGECNLVICYDYSS----NPIRMVQRRGR-GRAR---NSKCVLLTTGSE 530 (746)
T ss_pred ecchhccCCcccccEEEEecCCc----cHHHHHHHhcc-cccc---CCeEEEEEcchh
Confidence 99999999999999999988866 56688999999 9986 899999998643
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=313.61 Aligned_cols=356 Identities=17% Similarity=0.180 Sum_probs=222.1
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
.++.+.|++ .|| +|+++|.++++. ++.|++++++||||+|||+++.++.+.. ...|.++|||+||++|+.|+++.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~--il~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKR--ILRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHH--HHcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHH
Confidence 456667776 899 699999999987 9999999999999999999766555433 33678999999999999999999
Q ss_pred HHHHhhccC--CeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc--
Q 000107 590 LEVLLEPLG--RHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-- 657 (2191)
Q Consensus 590 l~~l~~~lg--~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-- 657 (2191)
++.++..++ +++..++|+..... + ..+++|+|+||+++...+..+. ..++++|||||+|+|.++
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~----~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK----HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh----hCCCCEEEEECceecccccc
Confidence 999887654 56666777764321 1 2358999999998776655421 267999999999999874
Q ss_pred ---------chhHHHHH-HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCce-EEEEeccCCCHHHHHHHhhccc-cc
Q 000107 658 ---------NRGYLLEL-LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQ-IVGMSATMPNVAAVADWLQAAL-YE 725 (2191)
Q Consensus 658 ---------~RG~~lE~-lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iq-II~mSATL~N~~~la~wL~a~l-~~ 725 (2191)
++.+.+.. ++..++.. ..........+...-+......+...| ++.+|||++.-.+...++...+ |.
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~ 296 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLK-KQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFE 296 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcc-cccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEE
Confidence 33333321 11111100 000000000000000000001122334 6789999875344445443211 11
Q ss_pred cccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHH---HHHHHHHHHH
Q 000107 726 TNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGC---ESTARHVSKF 802 (2191)
Q Consensus 726 ~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~---e~lA~~L~~~ 802 (2191)
.......+...+.. |... .......+..++.. .+.++||||+|++.+ +.++..|..
T Consensus 297 v~~~~~~lr~i~~~----yi~~-------------~~~~k~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~- 355 (1638)
T PRK14701 297 VGSGRSALRNIVDV----YLNP-------------EKIIKEHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLE- 355 (1638)
T ss_pred ecCCCCCCCCcEEE----EEEC-------------CHHHHHHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHH-
Confidence 11111111100000 0000 00001234444433 256899999998864 566665543
Q ss_pred HhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEec----cc
Q 000107 803 LKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT----ST 878 (2191)
Q Consensus 803 l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT----st 878 (2191)
.+ ..+..+||+ |..+++.|++|.++||||| ++
T Consensus 356 ---~G------------------------------------i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gv 391 (1638)
T PRK14701 356 ---DG------------------------------------FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGT 391 (1638)
T ss_pred ---CC------------------------------------CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCe
Confidence 11 237889985 8899999999999999999 48
Q ss_pred ccccCCCCC-ceEEeecCCCCCcccCccccc-------------ccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 879 LAAGVNLPA-RRVIFRQPRIGRDFIDGTRYR-------------QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 879 La~GVNLPa-v~VVI~~p~~g~~~is~~~y~-------------QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
++||||+|+ +++||+++.|... ++...|. +|.|||||.| ..+++++.+-..+...+.+++..
T Consensus 392 aaRGIDiP~~Vryvi~~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 392 LVRGLDLPERIRFAVFYGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred eEecCccCCccCEEEEeCCCCCC-cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 999999999 8999998776532 3344343 4559999999 57777755555656665555543
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=262.98 Aligned_cols=334 Identities=22% Similarity=0.290 Sum_probs=232.2
Q ss_pred HHHHHHHHH-cCCCCC-CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKL-YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l-~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
..+.+.|++ +|+.++ ++.|.+++.. .+...+++.|++|||+||++||.||.|-. ++..|++.|..+|...+.+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c-~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINC-IVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHH-HHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHH
Confidence 356677766 788776 6899999986 35667999999999999999999998753 5589999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCC----------CCCCCCCceEEEchHHH-----HHHHHHhhhcCCCCccceEEEccccc
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGG----------GSLPKDTSVAVCTIEKA-----NSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~----------~~l~~~~~IiV~TpEkl-----~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
+|..+ .+.+..+.+..+. ....+...+++.|||.+ ..+++.+.. -..+.++||||+|+
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHC 152 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhh
Confidence 88765 2333222221110 11334678999999985 344554322 24478999999999
Q ss_pred ccccch--hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc----cc-
Q 000107 654 VADQNR--GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA----LY- 724 (2191)
Q Consensus 654 l~d~~R--G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~----l~- 724 (2191)
++.|+. .+.+ +-|..||.. -+.+.-|+++||.+. -+++..-|.-. .|
T Consensus 153 VSQWGHDFRPDY-L~LG~LRS~-----------------------~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk 208 (641)
T KOG0352|consen 153 VSQWGHDFRPDY-LTLGSLRSV-----------------------CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK 208 (641)
T ss_pred HhhhccccCcch-hhhhhHHhh-----------------------CCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc
Confidence 998863 3332 234445433 256788999999642 33444444321 11
Q ss_pred ccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh-----------cCCcEEEEeCchhHHH
Q 000107 725 ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ-----------EGHSVLIFCSSRKGCE 793 (2191)
Q Consensus 725 ~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~-----------~g~~vLVF~~Sr~~~e 793 (2191)
.+.||.- -.|+..+ .. ...++..++.+.+...+- ..+..||||.||++||
T Consensus 209 TP~FR~N----------LFYD~~~------K~---~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cE 269 (641)
T KOG0352|consen 209 TPTFRDN----------LFYDNHM------KS---FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECE 269 (641)
T ss_pred Ccchhhh----------hhHHHHH------HH---HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHH
Confidence 2222221 1111110 00 011233445555544332 1267899999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEE
Q 000107 794 STARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873 (2191)
Q Consensus 794 ~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVL 873 (2191)
.+|-.|... +-|...+|+||...||.+|.+++-+|.+-||
T Consensus 270 q~AI~l~~~----------------------------------------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 270 QVAIMLEIA----------------------------------------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred HHHHHhhhc----------------------------------------CcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 999877431 1123448999999999999999999999999
Q ss_pred EecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCC
Q 000107 874 TATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESC 945 (2191)
Q Consensus 874 VATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l 945 (2191)
+||..+.+|||-|++|+||+-.... +..-|.|-.|||||.| ....|=++|..++...+.=++...+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~q----n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi~~e~ 375 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQ----NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFLVSGEL 375 (641)
T ss_pred EEEeccccccCCcceeEEEecCchh----hhHHHHHhccccccCC--CccceeeeecccchHHHHHHHhhHH
Confidence 9999999999999999999754443 7788999999999999 7889999999988776655655444
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-25 Score=303.60 Aligned_cols=305 Identities=17% Similarity=0.160 Sum_probs=190.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.++.+.+.+....+|+++|.++++. ++.|++++++||||+|||+ |.++++..+...+++++||+||++||.|+++.+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~--il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKR--VLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHH--HhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence 4566677664455899999999987 9999999999999999997 556666666667889999999999999999999
Q ss_pred HHHhhccCCeEE---EEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 591 EVLLEPLGRHVR---SYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 591 ~~l~~~lg~~V~---~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
..++..+|+.+. .++|+..... + ..+++|+|+||+++...+.++. .++++|||||+|.|.+.++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccc
Confidence 999887776543 4567653211 1 2358999999999877665421 1899999999999998543
Q ss_pred h-----------H-HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC--ceEEEEeccC-CCHHHHH-HHhhccc
Q 000107 660 G-----------Y-LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG--LQIVGMSATM-PNVAAVA-DWLQAAL 723 (2191)
Q Consensus 660 G-----------~-~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~--iqII~mSATL-~N~~~la-~wL~a~l 723 (2191)
+ . .++.++..++.-... .-..+...-.......+.. .+++++|||. |.. +. .++...+
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~--~~~~l~r~ll 290 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKL----YRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRG--KRAKLFRELL 290 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhcccc----chHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccc--cHHHHccccc
Confidence 2 2 234433322100000 0000000000000000122 3477899994 421 11 1111110
Q ss_pred -cccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCch---hHHHHHHHHH
Q 000107 724 -YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSR---KGCESTARHV 799 (2191)
Q Consensus 724 -~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr---~~~e~lA~~L 799 (2191)
+........++.... ...........+..++.. .+.++||||+++ +.|+.++..|
T Consensus 291 ~~~v~~~~~~~r~I~~------------------~~~~~~~~~~~L~~ll~~---l~~~~IVFv~t~~~~~~a~~l~~~L 349 (1171)
T TIGR01054 291 GFEVGGGSDTLRNVVD------------------VYVEDEDLKETLLEIVKK---LGTGGIVYVSIDYGKEKAEEIAEFL 349 (1171)
T ss_pred ceEecCccccccceEE------------------EEEecccHHHHHHHHHHH---cCCCEEEEEeccccHHHHHHHHHHH
Confidence 000000000000000 000000002234444433 256899999999 8888887776
Q ss_pred HHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe----
Q 000107 800 SKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA---- 875 (2191)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA---- 875 (2191)
.+. +..+..+||+++. .+++.|++|.++||||
T Consensus 350 ~~~----------------------------------------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~ 385 (1171)
T TIGR01054 350 ENH----------------------------------------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASY 385 (1171)
T ss_pred HhC----------------------------------------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccc
Confidence 431 1237889999973 6889999999999999
Q ss_pred cccccccCCCCC-ceEEeec
Q 000107 876 TSTLAAGVNLPA-RRVIFRQ 894 (2191)
Q Consensus 876 TstLa~GVNLPa-v~VVI~~ 894 (2191)
|++++||||+|+ +++||++
T Consensus 386 tdv~aRGIDip~~V~~vI~~ 405 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFL 405 (1171)
T ss_pred cCcccccCCCCccccEEEEE
Confidence 489999999999 7988874
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=294.04 Aligned_cols=340 Identities=17% Similarity=0.258 Sum_probs=219.6
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
-+++++|.+++.. ++.+ |+++++|||+|||++|.+++...+...++++|||+|+++|+.|+.+.++.++...+..+.
T Consensus 14 ~~~r~yQ~~~~~~--~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAAT--ALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHH--HhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4789999998875 5555 999999999999999999888877667889999999999999999999887654455777
Q ss_pred EEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 603 SYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 603 ~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.+.|+..... ...+.+|+|+||+.+...+.. ....+.++++|||||+|++.... ....++.+++..
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~---~~~~i~~~~~~~------ 159 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY---AYVYIAERYHED------ 159 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc---cHHHHHHHHHhc------
Confidence 7887654311 223578999999987554422 34467889999999999986431 122333333221
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCC-CHHHH---HHHhhcccc--cccc----ccc---cceEEEEe--ccc--
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMP-NVAAV---ADWLQAALY--ETNF----RPV---PLEEYIKV--GNA-- 742 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N~~~l---a~wL~a~l~--~~~~----Rpv---pL~e~i~~--~~~-- 742 (2191)
....++++||||.. +...+ ...|+...+ .+.+ .+. +-.+++.+ ...
T Consensus 160 -----------------~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~ 222 (773)
T PRK13766 160 -----------------AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELK 222 (773)
T ss_pred -----------------CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHH
Confidence 24568999999964 33333 333321110 0000 000 00000000 000
Q ss_pred ----------------------cc--c---chhh------HHH-------------------------------------
Q 000107 743 ----------------------IY--S---KKMD------VVR------------------------------------- 752 (2191)
Q Consensus 743 ----------------------~~--~---~~~~------~~r------------------------------------- 752 (2191)
.. . .... .++
T Consensus 223 ~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 302 (773)
T PRK13766 223 EIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEA 302 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 00 0 0000 000
Q ss_pred ------HHHHh----------------------------hccCCCChhHHHHHHHHHH--hcCCcEEEEeCchhHHHHHH
Q 000107 753 ------TILTA----------------------------ANLGGKDPDHIVELCDEVV--QEGHSVLIFCSSRKGCESTA 796 (2191)
Q Consensus 753 ------~l~~~----------------------------~~~~~~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA 796 (2191)
.+... ......+.+.+..++.+.. ..+.++||||++++.|+.++
T Consensus 303 ~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~ 382 (773)
T PRK13766 303 LRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIV 382 (773)
T ss_pred HHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHH
Confidence 00000 0000112233445555544 35689999999999999988
Q ss_pred HHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEec
Q 000107 797 RHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876 (2191)
Q Consensus 797 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT 876 (2191)
..|... +.... ...+.+...-|++|++.+|..+++.|++|.++|||||
T Consensus 383 ~~L~~~----~~~~~----------------------------~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT 430 (773)
T PRK13766 383 DLLEKE----GIKAV----------------------------RFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVST 430 (773)
T ss_pred HHHHhC----CCceE----------------------------EEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 887431 11000 0000000002557999999999999999999999999
Q ss_pred ccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 877 STLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 877 stLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
+++++|+|+|.+++||.++.+. +..+|+||+||+||.| .|.+|+++...
T Consensus 431 ~~~~eGldi~~~~~VI~yd~~~----s~~r~iQR~GR~gR~~---~~~v~~l~~~~ 479 (773)
T PRK13766 431 SVAEEGLDIPSVDLVIFYEPVP----SEIRSIQRKGRTGRQE---EGRVVVLIAKG 479 (773)
T ss_pred ChhhcCCCcccCCEEEEeCCCC----CHHHHHHHhcccCcCC---CCEEEEEEeCC
Confidence 9999999999999999876543 7778999999999988 68898888653
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=274.84 Aligned_cols=344 Identities=19% Similarity=0.201 Sum_probs=224.0
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..|. .|||+|..+++. ++.|+ |..+.||+|||++|.+|++...+ .|+.++||+|+++||.|.++.+..++..+|
T Consensus 99 ~lg~-~p~~VQ~~~~~~--ll~G~--Iae~~TGeGKTla~~lp~~~~al-~G~~v~VvTptreLA~qdae~~~~l~~~lG 172 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLA--LLSGR--LAEMQTGEGKTLTATLPAGTAAL-AGLPVHVITVNDYLAERDAELMRPLYEALG 172 (656)
T ss_pred HhCC-CCChHHHHHHHH--HhCCC--eeeeeCCCCcHHHHHHHHHHHhh-cCCeEEEEcCcHHHHHHHHHHHHHHHhhcC
Confidence 3676 799999999987 88888 99999999999999999998765 588999999999999999999999999999
Q ss_pred CeEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhhh-----------------------cCCCCccceEEEcccc
Q 000107 599 RHVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRMLE-----------------------EGRLSEIGIIVIDELH 652 (2191)
Q Consensus 599 ~~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~~-----------------------~~~L~~l~lVVIDEaH 652 (2191)
++|..++|+.... ....+++|+|+|...+ .+.++..+. ......+.+.||||+|
T Consensus 173 lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 173 LTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred CEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 9999999976421 1234689999998876 333332111 1124567899999999
Q ss_pred ccc-ccchh--------------HHHHHHHHHHHHhhcCC-------------------------CCCCCCC--------
Q 000107 653 MVA-DQNRG--------------YLLELLLTKLRYAAGEG-------------------------TSDSSSG-------- 684 (2191)
Q Consensus 653 ~l~-d~~RG--------------~~lE~lL~kLr~~~~~~-------------------------~~~s~~~-------- 684 (2191)
-+. |..|. ..+..+....+.+.... ..-.+.+
T Consensus 253 SiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~ 332 (656)
T PRK12898 253 SVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREE 332 (656)
T ss_pred ceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHH
Confidence 664 22111 11111111111110000 0000000
Q ss_pred -----------------------------CCCCC----CC---C-----------CCCC--------------CCCceEE
Q 000107 685 -----------------------------ENSGT----SS---G-----------KADP--------------AHGLQIV 703 (2191)
Q Consensus 685 -----------------------------~~~~~----~~---~-----------~~~~--------------~~~iqII 703 (2191)
+..+. +. + .-.. ..-.++.
T Consensus 333 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~ 412 (656)
T PRK12898 333 LVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLA 412 (656)
T ss_pred HHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHh
Confidence 00000 00 0 0000 0011577
Q ss_pred EEeccCCC-HHHHHHHhhcccc-ccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCc
Q 000107 704 GMSATMPN-VAAVADWLQAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHS 781 (2191)
Q Consensus 704 ~mSATL~N-~~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~ 781 (2191)
|||||.+. .+++.++.+..++ .+..+|..... ....++.... .+...+..++......+.+
T Consensus 413 GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~---~~~~v~~t~~--------------~K~~aL~~~i~~~~~~~~p 475 (656)
T PRK12898 413 GMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRH---LPDEVFLTAA--------------AKWAAVAARVRELHAQGRP 475 (656)
T ss_pred cccCcChHHHHHHHHHHCCCeEEeCCCCCcccee---cCCEEEeCHH--------------HHHHHHHHHHHHHHhcCCC
Confidence 89999875 4456666554422 23333331110 0111111110 1123445555554445789
Q ss_pred EEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHH
Q 000107 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVV 861 (2191)
Q Consensus 782 vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~V 861 (2191)
+||||+|++.++.++..|.+. + ..+..+||.+...++..+
T Consensus 476 vLIft~t~~~se~L~~~L~~~----g------------------------------------i~~~~Lhg~~~~rE~~ii 515 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREA----G------------------------------------LPHQVLNAKQDAEEAAIV 515 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHC----C------------------------------------CCEEEeeCCcHHHHHHHH
Confidence 999999999999998888541 1 126779999877776666
Q ss_pred HHHhhcCCceEEEecccccccCCCC---Cce-----EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 862 ETCYRKGLVRVLTATSTLAAGVNLP---ARR-----VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 862 e~~Fr~G~ikVLVATstLa~GVNLP---av~-----VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
..+++.| .|+|||++++||+||+ .+. +||++..+. +...|.||+||+||.| .+|.|+.|++.+|
T Consensus 516 ~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~----s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 516 ARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD----SARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred HHcCCCC--cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC----CHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 6555554 6999999999999999 665 899887776 7778999999999999 7999999998754
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=278.67 Aligned_cols=322 Identities=16% Similarity=0.224 Sum_probs=205.6
Q ss_pred CCCCHHHHHhhhhcccc-cC--CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVL-QR--RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il-~g--knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|+|+|.+++.. ++ .| ++.++++|||+|||+++..++.+ + ++++|||+|+..|+.|+.++|.+++.-...
T Consensus 254 ~~LRpYQ~eAl~~--~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSK--MFGNGRARSGIIVLPCGAGKSLVGVTAACT-V---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHH--HHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 3789999999975 44 34 47899999999999999765543 2 578999999999999999999887543345
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHH------hhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHh
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR------MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYA 673 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~------l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~ 673 (2191)
.+..++|+.... ......|+|+|+..+....++ .+....-..+++||+||+|++.. ..+..++..+
T Consensus 328 ~I~~~tg~~k~~-~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l--- 399 (732)
T TIGR00603 328 QICRFTSDAKER-FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV--- 399 (732)
T ss_pred eEEEEecCcccc-cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc---
Confidence 566676654322 223468999999876432111 11111124689999999999853 3333344433
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC----HHHHHHHhhccccccccccc-------cce---EEEEe
Q 000107 674 AGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN----VAAVADWLQAALYETNFRPV-------PLE---EYIKV 739 (2191)
Q Consensus 674 ~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N----~~~la~wL~a~l~~~~~Rpv-------pL~---e~i~~ 739 (2191)
.....+|||||+.. ..++...+|..+|..++... +.+ ..+..
T Consensus 400 ------------------------~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~ 455 (732)
T TIGR00603 400 ------------------------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPM 455 (732)
T ss_pred ------------------------CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecC
Confidence 12357999999752 33444455655554433211 111 01111
Q ss_pred ccccccchhh---HHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCch
Q 000107 740 GNAIYSKKMD---VVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816 (2191)
Q Consensus 740 ~~~~~~~~~~---~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~ 816 (2191)
....+..... ..+... ......+...+..++...-..+.++||||.+...++.++..|
T Consensus 456 t~~~~~~yl~~~~~~k~~l--~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----------------- 516 (732)
T TIGR00603 456 TPEFYREYLRENSRKRMLL--YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----------------- 516 (732)
T ss_pred CHHHHHHHHHhcchhhhHH--hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----------------
Confidence 1111100000 000000 011111222333344433346789999999987766555433
Q ss_pred hhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcC-CceEEEecccccccCCCCCceEEeecC
Q 000107 817 FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG-LVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 817 ~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G-~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
|+.++||+++..+|..+++.|+.| .+++||+|.++.+|||+|.+.+||...
T Consensus 517 ----------------------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 517 ----------------------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred ----------------------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeC
Confidence 145689999999999999999975 889999999999999999999998754
Q ss_pred C-CCCcccCcccccccccccCCCCCCCc-----eEEEEEeChhh
Q 000107 896 R-IGRDFIDGTRYRQMAGRAGRTGIDTK-----GESMLICKPEE 933 (2191)
Q Consensus 896 ~-~g~~~is~~~y~QmiGRAGR~G~d~~-----Ge~ill~~~~e 933 (2191)
. .+ +..+|.||+||++|++.+.. ...|.|++.+.
T Consensus 569 ~~~g----S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 569 SHYG----SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCCC----CHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 3 24 78899999999999984322 22366776643
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=246.79 Aligned_cols=333 Identities=23% Similarity=0.333 Sum_probs=236.0
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
.++.++|++ +..++++|.|.++|+. ...|+++++..|||+||++||.+|.|- ..+-+|+|+|..+|...+.-.
T Consensus 80 ~e~~~ilk~~f~lekfrplq~~ain~--~ma~ed~~lil~tgggkslcyqlpal~----adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 80 DEAKDILKEQFHLEKFRPLQLAAINA--TMAGEDAFLILPTGGGKSLCYQLPALC----ADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred hHHHHHHHHHhhHHhcChhHHHHhhh--hhccCceEEEEeCCCccchhhhhhHHh----cCCceEeechhHHHHHHHHHH
Confidence 455666654 5678999999999987 889999999999999999999999875 477899999999999988877
Q ss_pred HHHHhhccCCeEEEEeccCCCC----------CCCCCCceEEEchHHHHH---HHHHhhhcCCCCccceEEEcccccccc
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGG----------SLPKDTSVAVCTIEKANS---LVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~----------~l~~~~~IiV~TpEkl~~---Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
++.+ |+....+..+.... .......+++.|||++.. +++++-.......+.+|-|||+|+-..
T Consensus 154 lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq 229 (695)
T KOG0353|consen 154 LKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ 229 (695)
T ss_pred HHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh
Confidence 7664 55544333332211 112346899999999743 344443334456689999999999998
Q ss_pred cch--hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhh---ccccccccc
Q 000107 657 QNR--GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQ---AALYETNFR 729 (2191)
Q Consensus 657 ~~R--G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~---a~l~~~~~R 729 (2191)
|+. .+.+.. |..|++- -++..|||++||..| +.+..+.|. +..|...|.
T Consensus 230 wghdfr~dy~~-l~ilkrq-----------------------f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn 285 (695)
T KOG0353|consen 230 WGHDFRPDYKA-LGILKRQ-----------------------FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN 285 (695)
T ss_pred hCcccCcchHH-HHHHHHh-----------------------CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC
Confidence 753 333432 3333321 367889999999776 556666665 334555554
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
...|...+.-... ...+. .+.+..++..-. .|.+.||||-+++.||.++..|..+. +
T Consensus 286 r~nl~yev~qkp~---n~dd~--------------~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~g----i- 342 (695)
T KOG0353|consen 286 RPNLKYEVRQKPG---NEDDC--------------IEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHG----I- 342 (695)
T ss_pred CCCceeEeeeCCC---ChHHH--------------HHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcC----c-
Confidence 4344332221100 00000 111222222111 36789999999999999998885421 1
Q ss_pred cCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce
Q 000107 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~ 889 (2191)
....+|+.|.+++|.-+-+.+..|.|.|+|||-.+.+|||-|++|
T Consensus 343 -----------------------------------~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvr 387 (695)
T KOG0353|consen 343 -----------------------------------HAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVR 387 (695)
T ss_pred -----------------------------------cccccccccCccccccccccccccceEEEEEEeeecccCCCCCee
Confidence 145589999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccCcccccc-------------------------------------------cccccCCCCCCCceEEE
Q 000107 890 VIFRQPRIGRDFIDGTRYRQ-------------------------------------------MAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~Q-------------------------------------------miGRAGR~G~d~~Ge~i 926 (2191)
+||+...+. +...|.| -.|||||.+ -+..||
T Consensus 388 fvihhsl~k----sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~ci 461 (695)
T KOG0353|consen 388 FVIHHSLPK----SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCI 461 (695)
T ss_pred EEEecccch----hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEE
Confidence 999977655 6777777 679999998 688999
Q ss_pred EEeChhhHHHHHhhh
Q 000107 927 LICKPEEVKKIMGLL 941 (2191)
Q Consensus 927 ll~~~~e~~~~~~ll 941 (2191)
++|.-.+.-++..++
T Consensus 462 lyy~~~difk~ssmv 476 (695)
T KOG0353|consen 462 LYYGFADIFKISSMV 476 (695)
T ss_pred EEechHHHHhHHHHH
Confidence 999877655544444
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=263.82 Aligned_cols=320 Identities=22% Similarity=0.321 Sum_probs=228.9
Q ss_pred HHHHHHHcCCCCCCHHHHHhhhhccccc------CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 513 ICSIYKKRGISKLYPWQVECLHVDGVLQ------RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 513 l~~~l~~~Gi~~l~p~Q~eal~~~~il~------gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
+.+.+....| +||.-|.+++.. |.. ..|=++.|.-|||||+|+.++|+..+. .|.++.+++||--||.|.
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~E--I~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKE--ILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-AGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHH--HHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-cCCeeEEeccHHHHHHHH
Confidence 4445566788 799999999975 553 367899999999999999999997664 689999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
+..+.+++.++|++|..++|....+. .....+|+|+|-. |+. ....++++++|||||=|+.|-.
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFGV~- 399 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFGVH- 399 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEeccccccHH-
Confidence 99999999999999999999876532 3345899999964 332 3457899999999999995533
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC-CceEEEEeccCCCHHHHHHHhhcccccc--cccc---cc
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAH-GLQIVGMSATMPNVAAVADWLQAALYET--NFRP---VP 732 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~-~iqII~mSATL~N~~~la~wL~a~l~~~--~~Rp---vp 732 (2191)
-...|..- .. .+.++.|||| |=+..++=-.-+.+-.+ +.-| .|
T Consensus 400 ----QR~~L~~K--------------------------G~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GRkp 448 (677)
T COG1200 400 ----QRLALREK--------------------------GEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGRKP 448 (677)
T ss_pred ----HHHHHHHh--------------------------CCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCCCc
Confidence 22222111 12 5789999999 33344432222221111 1111 12
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+..++. .....+.+++.+.+.+..|+++.|-||-..+.|.+--.-+.
T Consensus 449 I~T~~i----------------------~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~----------- 495 (677)
T COG1200 449 ITTVVI----------------------PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAE----------- 495 (677)
T ss_pred eEEEEe----------------------ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHH-----------
Confidence 222111 12344566777777788999999999988876633211100
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhc-CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETL-PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l-~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV 891 (2191)
+..+ .|.... .+.|+.+||.|..+|++.|.++|++|.++|||||++.+.|||+|+.++.
T Consensus 496 ---------~~~~-----------~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 496 ---------ELYE-----------ELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred ---------HHHH-----------HHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEE
Confidence 0001 111111 2349999999999999999999999999999999999999999998864
Q ss_pred eecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 892 I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|- ...+.+-.++..|-.||.||.+ ..+.|++++.+..
T Consensus 556 VI---e~AERFGLaQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 556 VI---ENAERFGLAQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred EE---echhhhhHHHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 31 1223335678999999999988 7899999998743
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=272.14 Aligned_cols=340 Identities=20% Similarity=0.191 Sum_probs=211.8
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY 604 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~ 604 (2191)
++|+|.|++....+..| .|+.++||+|||++|.+|++...+ .|+.++||+|+++||.+.++++..++..+|+.|...
T Consensus 69 lrpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 45555555544223344 699999999999999999877665 477899999999999999999999999999999887
Q ss_pred eccCCCCC-------CCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccchhHH---------
Q 000107 605 YGNQGGGS-------LPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNRGYL--------- 662 (2191)
Q Consensus 605 ~G~~~~~~-------l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~RG~~--------- 662 (2191)
+++..... ...+++|+++||+++ .++++..+ ....+..+.++||||+|.|. |..|.+.
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76522111 123689999999998 45453321 12346789999999999884 3222211
Q ss_pred ---HHHHHHHHHHhhcCCC------CC------------------CCCC-------------------------------
Q 000107 663 ---LELLLTKLRYAAGEGT------SD------------------SSSG------------------------------- 684 (2191)
Q Consensus 663 ---lE~lL~kLr~~~~~~~------~~------------------s~~~------------------------------- 684 (2191)
+..+...++.+..... .. .+.+
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 1111111111110000 00 0000
Q ss_pred -------CCCCC----C---CC-----------C-CC-------------CCCCceEEEEeccCCC-HHHHHHHhhccc-
Q 000107 685 -------ENSGT----S---SG-----------K-AD-------------PAHGLQIVGMSATMPN-VAAVADWLQAAL- 723 (2191)
Q Consensus 685 -------~~~~~----~---~~-----------~-~~-------------~~~~iqII~mSATL~N-~~~la~wL~a~l- 723 (2191)
+..+. + .+ . .. ...-.++.|||.|... ..++.+..+-.+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 00000 0 00 0 00 0000145566666421 222222222111
Q ss_pred cccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHH
Q 000107 724 YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803 (2191)
Q Consensus 724 ~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l 803 (2191)
..+..+|+.... ....+|.... .+...+...+.+....+.++||||+|+..++.++..|.+.
T Consensus 386 ~IPt~kp~~r~d---~~d~i~~~~~--------------~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~- 447 (762)
T TIGR03714 386 KIPTNKPIIRID---YPDKIYATLP--------------EKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE- 447 (762)
T ss_pred EcCCCCCeeeee---CCCeEEECHH--------------HHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC-
Confidence 122333322111 1112222111 1123455556565667899999999999998888777541
Q ss_pred hhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 000107 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883 (2191)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GV 883 (2191)
+ ..+..+||.+.+.+|..+..+++.| +|+|||++++||+
T Consensus 448 ---g------------------------------------i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 448 ---G------------------------------------IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGT 486 (762)
T ss_pred ---C------------------------------------CCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccccccc
Confidence 1 1266789999999999999988888 7999999999999
Q ss_pred CCC---------CceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 884 NLP---------ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 884 NLP---------av~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
||| ++.||+++..+. .....||+|||||.| .+|.++.|++.++
T Consensus 487 DI~l~~~v~~~GGL~vIit~~~ps-----~rid~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 487 DIKLGKGVAELGGLAVIGTERMEN-----SRVDLQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred CCCCCccccccCCeEEEEecCCCC-----cHHHHHhhhcccCCC--CceeEEEEEccch
Confidence 999 889999866653 234489999999999 8999999998754
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=274.81 Aligned_cols=338 Identities=17% Similarity=0.206 Sum_probs=218.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ .||++|..+... +++|+ |..+.||+|||++|.+|++...+ .|+.+++++|++.||.|.++++..++..+|+
T Consensus 75 ~g~-~p~~vQl~~~~~--l~~G~--Iaem~TGeGKTL~a~lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALV--LHEGN--IAEMQTGEGKTLTATMPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHH--HcCCc--eeeecCCCcchHHHHHHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 576 789999888765 66676 99999999999999999986665 5889999999999999999999999999999
Q ss_pred eEEEEeccCC-CC--CCCCCCceEEEchHHH-HHHHHH-hh---hcCCCCccceEEEccccccc-ccchhHH--------
Q 000107 600 HVRSYYGNQG-GG--SLPKDTSVAVCTIEKA-NSLVNR-ML---EEGRLSEIGIIVIDELHMVA-DQNRGYL-------- 662 (2191)
Q Consensus 600 ~V~~~~G~~~-~~--~l~~~~~IiV~TpEkl-~~Ll~~-l~---~~~~L~~l~lVVIDEaH~l~-d~~RG~~-------- 662 (2191)
+|+.+.|+.. .. ....+++|+++||+.+ .++++. +. ....++.+.++||||+|.|. |..|.+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999998765 21 1223589999999998 343432 21 12356789999999999775 4323221
Q ss_pred ---HHHHHHHH-HHhhcCCCCCCCCCCCCC-------CCC----------------------------------------
Q 000107 663 ---LELLLTKL-RYAAGEGTSDSSSGENSG-------TSS---------------------------------------- 691 (2191)
Q Consensus 663 ---lE~lL~kL-r~~~~~~~~~s~~~~~~~-------~~~---------------------------------------- 691 (2191)
+..+...+ +.+... -+++... +..
T Consensus 229 ~~~~y~~~~~~~~~l~~~-----~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEED-----VDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred ccHHHHHHHHHHHhcccC-----CCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 11111111 111000 0000000 000
Q ss_pred --------------CCC------CCC--------------------------------CCceEEEEeccCCC-HHHHHHH
Q 000107 692 --------------GKA------DPA--------------------------------HGLQIVGMSATMPN-VAAVADW 718 (2191)
Q Consensus 692 --------------~~~------~~~--------------------------------~~iqII~mSATL~N-~~~la~w 718 (2191)
..+ ... .-.++.|||.|... .+++.+.
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 000 000 00023344444321 1111111
Q ss_pred hhccc-cccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHH
Q 000107 719 LQAAL-YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTAR 797 (2191)
Q Consensus 719 L~a~l-~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~ 797 (2191)
.+-.+ ..+.++|+-... ....++... ......+..++......+.++||||+|++.++.++.
T Consensus 384 Y~l~v~~IPt~kp~~r~d---~~~~i~~~~--------------~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~ 446 (790)
T PRK09200 384 YNMEVVQIPTNRPIIRID---YPDKVFVTL--------------DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSK 446 (790)
T ss_pred hCCcEEECCCCCCccccc---CCCeEEcCH--------------HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence 11110 011122211100 000111000 011223444554444568899999999999998888
Q ss_pred HHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecc
Q 000107 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 798 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATs 877 (2191)
.|.+. +..+..+||.+...++..+..+++.| +|+|||+
T Consensus 447 ~L~~~----------------------------------------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATd 484 (790)
T PRK09200 447 LLDEA----------------------------------------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATN 484 (790)
T ss_pred HHHHC----------------------------------------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEcc
Confidence 87541 11267799999999999999998887 7999999
Q ss_pred cccccCCC---CCce-----EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 878 TLAAGVNL---PARR-----VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 878 tLa~GVNL---Pav~-----VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
+++||+|| |.+. +||++..+. +...|.||+|||||.| .+|.++.|++.++
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~----s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERME----SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCC----CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 99999999 6888 999888776 7788999999999999 8999999988754
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=280.47 Aligned_cols=325 Identities=19% Similarity=0.170 Sum_probs=195.2
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEchhHHHHHHHHHHHHHHhhcc--C
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAEKAEHLEVLLEPL--G 598 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~P~raLA~q~~~~l~~l~~~l--g 598 (2191)
..+|+|.|..+... ...+..+|+.||||+|||.++++++.+.+... ..+++|.+||+++++++++++.+++..+ .
T Consensus 284 ~~~p~p~Q~~~~~~--~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 284 GYQPRQLQTLVDAL--PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCCChHHHHHHHhh--ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 34899999988643 34577899999999999999977766433322 3589999999999999999988654432 2
Q ss_pred CeEEEEeccCCCCC-------------------------C---CC---CCceEEEchHHHHHHHHHhhhcCCCCcc----
Q 000107 599 RHVRSYYGNQGGGS-------------------------L---PK---DTSVAVCTIEKANSLVNRMLEEGRLSEI---- 643 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~-------------------------l---~~---~~~IiV~TpEkl~~Ll~~l~~~~~L~~l---- 643 (2191)
..|...+|...... + .+ -..|+|||+.++..-+-.. ....++.+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~-kh~~lR~~~La~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPV-KHRFIRGFGLGR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHcc-chHHHHHHhhcc
Confidence 35666666532100 0 01 1589999999875322110 00112222
Q ss_pred ceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhc
Q 000107 644 GIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQA 721 (2191)
Q Consensus 644 ~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a 721 (2191)
++|||||+|.+. ......++.++..+.. ...++|+||||+|.. +.+.+-++.
T Consensus 441 svvIiDEVHAyD-~ym~~lL~~~L~~l~~-------------------------~g~~vIllSATLP~~~r~~L~~a~~~ 494 (878)
T PRK09694 441 SVLIVDEVHAYD-AYMYGLLEAVLKAQAQ-------------------------AGGSVILLSATLPATLKQKLLDTYGG 494 (878)
T ss_pred CeEEEechhhCC-HHHHHHHHHHHHHHHh-------------------------cCCcEEEEeCCCCHHHHHHHHHHhcc
Confidence 589999999973 2233444444444321 245699999999851 222221121
Q ss_pred cccccccccccceEEEEeccc----cccchh--hHHHHHH-HhhccC-CCChhHHHHHHHHHHhcCCcEEEEeCchhHHH
Q 000107 722 ALYETNFRPVPLEEYIKVGNA----IYSKKM--DVVRTIL-TAANLG-GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCE 793 (2191)
Q Consensus 722 ~l~~~~~RpvpL~e~i~~~~~----~~~~~~--~~~r~l~-~~~~~~-~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e 793 (2191)
..-.....++|+-........ ...... ...+.+. ...... ....+.+.+.+.+....++++||||||++.|+
T Consensus 495 ~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq 574 (878)
T PRK09694 495 HDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQ 574 (878)
T ss_pred ccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 100000011222110000000 000000 0000000 000000 01223455555555667899999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH----HHHHHh-hcC
Q 000107 794 STARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE----VVETCY-RKG 868 (2191)
Q Consensus 794 ~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~----~Ve~~F-r~G 868 (2191)
.+++.|.+.... ...|..+||.++..+|. .+++.| ++|
T Consensus 575 ~ly~~L~~~~~~-------------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g 617 (878)
T PRK09694 575 KLYQRLKELNNT-------------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNG 617 (878)
T ss_pred HHHHHHHhhCCC-------------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 999888642210 01288999999999994 456677 666
Q ss_pred C---ceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 869 L---VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 869 ~---ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
. .+|||||+++++||||+. .++|.... +...|+||+||+||.+.
T Consensus 618 ~r~~~~ILVaTQViE~GLDId~-DvlItdla------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 618 KRNQGRILVATQVVEQSLDLDF-DWLITQLC------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred CcCCCeEEEECcchhheeecCC-CeEEECCC------CHHHHHHHHhccCCCCC
Confidence 6 479999999999999965 66664322 56789999999999985
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=237.42 Aligned_cols=308 Identities=19% Similarity=0.268 Sum_probs=217.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC--EEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK--MALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~--kaL~I~P~raLA~q~ 586 (2191)
|.++++.++-..||++|..+|.+|||. ..-|.+++..|.+|.|||.+|.++.|+.+..-.+ .+++++-||+||-|+
T Consensus 49 lkpellraivdcgfehpsevqhecipq--ailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi 126 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQI 126 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhH--HhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHH
Confidence 668899999999999999999999986 5679999999999999999999999998865333 678999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
.+++.++...+ +++|.++||+..... +...++|+|+||+++..|++. ....++++.++|+||++.+.++ .
T Consensus 127 ~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~---l 201 (387)
T KOG0329|consen 127 SKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQ---L 201 (387)
T ss_pred HHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHH---H
Confidence 98877665443 689999999875432 344689999999999999987 6678999999999999987653 1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEEEEec
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~i~~~ 740 (2191)
.+..=+..+-++ .+..-|+..+|||+++ ..-+.+ .|-.-|++.|+.-.
T Consensus 202 DMrRDvQEifr~----------------------tp~~KQvmmfsatlskeiRpvC~---------kFmQdPmEi~vDdE 250 (387)
T KOG0329|consen 202 DMRRDVQEIFRM----------------------TPHEKQVMMFSATLSKEIRPVCH---------KFMQDPMEIFVDDE 250 (387)
T ss_pred HHHHHHHHHhhc----------------------CcccceeeeeeeecchhhHHHHH---------hhhcCchhhhccch
Confidence 111111112111 2567899999999974 222221 11223445444322
Q ss_pred cccccchhhHHHHHH-HhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhh
Q 000107 741 NAIYSKKMDVVRTIL-TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~-~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~ 819 (2191)
....-.. +...+ +.. ...+...+.+|+..+ +-.+++||+.|... |
T Consensus 251 ~KLtLHG---LqQ~YvkLk--e~eKNrkl~dLLd~L--eFNQVvIFvKsv~R-------l-------------------- 296 (387)
T KOG0329|consen 251 AKLTLHG---LQQYYVKLK--ENEKNRKLNDLLDVL--EFNQVVIFVKSVQR-------L-------------------- 296 (387)
T ss_pred hhhhhhh---HHHHHHhhh--hhhhhhhhhhhhhhh--hhcceeEeeehhhh-------h--------------------
Confidence 1110000 00000 000 011223344444322 23588888876442 0
Q ss_pred hHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCC
Q 000107 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899 (2191)
Q Consensus 820 ~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~ 899 (2191)
+ | ..+ ||||+.+.+|+||-.+.+||+++.+.
T Consensus 297 ----------------------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~- 327 (387)
T KOG0329|consen 297 ----------------------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE- 327 (387)
T ss_pred ----------------------------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCC-
Confidence 0 2 113 89999999999999999999999987
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhc
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLN 942 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~ 942 (2191)
+..+|+||+|||||.| +.|.+|.++...+..++.+-++
T Consensus 328 ---~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~iLn~vq 365 (387)
T KOG0329|consen 328 ---DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKILNPVQ 365 (387)
T ss_pred ---CchHHHHHhhhhhccc--cccceeehhcchhhHHHhchhh
Confidence 7889999999999999 8999999998866555443333
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=275.11 Aligned_cols=354 Identities=19% Similarity=0.227 Sum_probs=216.7
Q ss_pred CCCHHHHHhhhhccccc---CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 524 KLYPWQVECLHVDGVLQ---RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~---gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
.|++.|.+++.. +.. ++++++.||||||||.+|..++...+ ..|+++||++|+++|+.|+++.|++.+ |.+
T Consensus 144 ~Lt~~Q~~ai~~--i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEA--IRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHH--HHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 689999999986 665 48899999999999999987766544 468899999999999999999998765 577
Q ss_pred EEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-hhHH--HHHHHHH
Q 000107 601 VRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN-RGYL--LELLLTK 669 (2191)
Q Consensus 601 V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~-RG~~--lE~lL~k 669 (2191)
+..++|+.+... .....+|+|+|+..+. ..+.++++|||||+|..+..+ .++. ...+. .
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~ 287 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-V 287 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-H
Confidence 888888765321 2245799999997642 257889999999999876432 2221 12221 1
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc--ccccccc----cccceEEEEecccc
Q 000107 670 LRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA--LYETNFR----PVPLEEYIKVGNAI 743 (2191)
Q Consensus 670 Lr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~--l~~~~~R----pvpL~e~i~~~~~~ 743 (2191)
++.. ..+.++|++|||. ..+.+....... ++....| +.|--+.+....
T Consensus 288 ~ra~-----------------------~~~~~~il~SATp-s~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~-- 341 (679)
T PRK05580 288 VRAK-----------------------LENIPVVLGSATP-SLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRE-- 341 (679)
T ss_pred HHhh-----------------------ccCCCEEEEcCCC-CHHHHHHHhccceeEEEeccccccCCCCeEEEEechh--
Confidence 2111 2468999999994 555444332211 1111112 122111221100
Q ss_pred ccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHh---hcc-----------cc
Q 000107 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK---KFS-----------IN 809 (2191)
Q Consensus 744 ~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~---~~~-----------~~ 809 (2191)
.... .....-...+...+.+.+..+.++|||+|.+..+-.+...-+.... ..+ ..
T Consensus 342 ---------~~~~--~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~ 410 (679)
T PRK05580 342 ---------LLRG--ENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLR 410 (679)
T ss_pred ---------hhhh--cccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEE
Confidence 0000 0001234566777888888889999999987643222211111100 000 00
Q ss_pred cCCC--Cchhhhh-HHH-HHHhhcCCCC---CChhhhhhc-CCcEEEEcCCCC--HHHHHHHHHHhhcCCceEEEecccc
Q 000107 810 VHSS--DSEFIDI-TSA-IDALRRCPAG---LDPVLEETL-PSGVAYHHAGLT--VEEREVVETCYRKGLVRVLTATSTL 879 (2191)
Q Consensus 810 ~~~~--~~~~~~~-~~~-~~~L~~~~~g---ld~~L~~~l-~~GVa~hHagLs--~~eR~~Ve~~Fr~G~ikVLVATstL 879 (2191)
++.. ....... -.. -..+.....| +.+.|.+.+ ...|...|++++ .++++.+++.|++|+++|||+|+++
T Consensus 411 Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 411 CHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred CCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhh
Confidence 0000 0000000 000 0000000001 112333333 246899999997 4679999999999999999999999
Q ss_pred cccCCCCCceEE--eecCCCC--Ccc----cCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 880 AAGVNLPARRVI--FRQPRIG--RDF----IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 880 a~GVNLPav~VV--I~~p~~g--~~~----is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
++|+|+|++.+| ++.+..- .++ -....|.|++|||||.+ ..|.+++.+...
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p 549 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHP 549 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCC
Confidence 999999999866 4433221 011 11346899999999987 789999887653
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=263.46 Aligned_cols=339 Identities=17% Similarity=0.143 Sum_probs=221.1
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. +||+.|..+... +..|+ |..++||+|||++|.+|++-..+ .|+.+.+++|++.||.|.++++..++..+|+
T Consensus 53 lg~-~p~~vQlig~~~--l~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIA--LHKGK--IAEMKTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhh--hcCCc--eeeecCCCccHHHHHHHHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 565 788888887754 56665 99999999999999999964444 3778999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEcccccccc-cchhHHH--------
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVAD-QNRGYLL-------- 663 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~d-~~RG~~l-------- 663 (2191)
+|..++|+..... ..-.++|+|+||.++ .++++.-+ ....++.++++||||+|.++- ..|.+.+
T Consensus 127 sv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999998754311 112479999999998 77776421 123578899999999998763 3333221
Q ss_pred ---HHHHHHHHHhhcCCCCCCCCCCCCCCC--------------------------------------------------
Q 000107 664 ---ELLLTKLRYAAGEGTSDSSSGENSGTS-------------------------------------------------- 690 (2191)
Q Consensus 664 ---E~lL~kLr~~~~~~~~~s~~~~~~~~~-------------------------------------------------- 690 (2191)
-.....+-..... ..++......
T Consensus 207 ~~ly~~a~~i~r~L~~----~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 207 TELYLQANRFAKALEK----EVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred hHHHHHHHHHHHhhcc----CCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 1111111100000 0000000000
Q ss_pred -----------CC------CCCC--------------------------------CCCceEEEEeccCCC-HHHHHHHhh
Q 000107 691 -----------SG------KADP--------------------------------AHGLQIVGMSATMPN-VAAVADWLQ 720 (2191)
Q Consensus 691 -----------~~------~~~~--------------------------------~~~iqII~mSATL~N-~~~la~wL~ 720 (2191)
.. .+.. ..-.++.|||.|... ..++.+..+
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 00 0000 000134455555432 122222222
Q ss_pred ccc-cccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHH
Q 000107 721 AAL-YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799 (2191)
Q Consensus 721 a~l-~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L 799 (2191)
-.+ ..+.++|+... .....+|.... .....+...+.+....+.++||||+|+..++.++..|
T Consensus 363 l~vv~IPtnkp~~R~---d~~d~i~~t~~--------------~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L 425 (745)
T TIGR00963 363 LEVVVVPTNRPVIRK---DLSDLVYKTEE--------------EKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLL 425 (745)
T ss_pred CCEEEeCCCCCeeee---eCCCeEEcCHH--------------HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHH
Confidence 111 12222332111 11111121111 1123444555555678999999999999999988887
Q ss_pred HHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 000107 800 SKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879 (2191)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstL 879 (2191)
.+. +. ....+||. +.+|+..+.+|+.+...|+|||+++
T Consensus 426 ~~~----gi------------------------------------~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmA 463 (745)
T TIGR00963 426 KER----GI------------------------------------PHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMA 463 (745)
T ss_pred HHc----CC------------------------------------CeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccc
Confidence 552 11 15568988 7899999999999999999999999
Q ss_pred cccCCCCC-------ceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 880 AAGVNLPA-------RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 880 a~GVNLPa-------v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
+||+||+. ..+||++..+. +...|.|++||+||.| .+|.+..+++.++
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~----s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHE----SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCC----cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 99999998 45899877765 7788999999999999 7999999987654
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=259.14 Aligned_cols=320 Identities=16% Similarity=0.201 Sum_probs=199.6
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCC
Q 000107 545 VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKD 616 (2191)
Q Consensus 545 Ii~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~ 616 (2191)
++.||||||||.+|..+ +..++..|+++||++|+++|+.|++++|++.+ |..+..++|+.+... ....
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLALGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999999999655 44556678899999999999999999998765 567888888764321 2235
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-hhHHH--HHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN-RGYLL--ELLLTKLRYAAGEGTSDSSSGENSGTSSGK 693 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~-RG~~l--E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~ 693 (2191)
.+|+|+|+..+. ..+.++++|||||.|.....+ .++.+ ..+ ..++..
T Consensus 77 ~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~-------------------- 126 (505)
T TIGR00595 77 ILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAK-------------------- 126 (505)
T ss_pred CCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHH--------------------
Confidence 789999987531 257889999999999977432 12221 111 111111
Q ss_pred CCCCCCceEEEEeccCCCHHHHHHHhhccc--ccc----ccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhH
Q 000107 694 ADPAHGLQIVGMSATMPNVAAVADWLQAAL--YET----NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDH 767 (2191)
Q Consensus 694 ~~~~~~iqII~mSATL~N~~~la~wL~a~l--~~~----~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~ 767 (2191)
..+.++|++||| |.++.+.......+ ... ..++.|....+..... . ....-.+.
T Consensus 127 ---~~~~~vil~SAT-Psles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~-----~-----------~~~~ls~~ 186 (505)
T TIGR00595 127 ---KFNCPVVLGSAT-PSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKE-----P-----------RQSFLSPE 186 (505)
T ss_pred ---hcCCCEEEEeCC-CCHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccc-----c-----------ccCCccHH
Confidence 146789999999 66666665543321 111 1122222222211100 0 00123456
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHH---Hhhc------------------ccc------cCCCCc-hhh-
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF---LKKF------------------SIN------VHSSDS-EFI- 818 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~---l~~~------------------~~~------~~~~~~-~~~- 818 (2191)
+.+.+.+.++.++++|||+|++..+-.+...=+.. ++.. +.. .....+ .+.
T Consensus 187 l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~ 266 (505)
T TIGR00595 187 LITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVY 266 (505)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEe
Confidence 77788888888999999999987532111110000 0000 000 000000 000
Q ss_pred ---hhHHHHHHhhcCCCCCChhhhhhc-CCcEEEEcCCCCHHHH--HHHHHHhhcCCceEEEecccccccCCCCCceEE-
Q 000107 819 ---DITSAIDALRRCPAGLDPVLEETL-PSGVAYHHAGLTVEER--EVVETCYRKGLVRVLTATSTLAAGVNLPARRVI- 891 (2191)
Q Consensus 819 ---~~~~~~~~L~~~~~gld~~L~~~l-~~GVa~hHagLs~~eR--~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV- 891 (2191)
..+... +.|.+.+ ...|..+|++++...+ +.+++.|++|.++|||+|+++++|+|+|++.+|
T Consensus 267 ~g~Gte~~~-----------e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~ 335 (505)
T TIGR00595 267 KGYGTEQVE-----------EELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVG 335 (505)
T ss_pred ecccHHHHH-----------HHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEE
Confidence 011111 2333333 2469999999988766 899999999999999999999999999998855
Q ss_pred -eecCCCC--Cc----ccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 892 -FRQPRIG--RD----FIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 892 -I~~p~~g--~~----~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
++.+..- .+ .-....|.|++|||||.+ ..|++++.+..
T Consensus 336 vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~--~~g~viiqt~~ 380 (505)
T TIGR00595 336 VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE--DPGQVIIQTYN 380 (505)
T ss_pred EEcCcccccCcccchHHHHHHHHHHHHhccCCCC--CCCEEEEEeCC
Confidence 4544311 11 112346899999999988 68999976643
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-24 Score=270.09 Aligned_cols=364 Identities=23% Similarity=0.330 Sum_probs=274.6
Q ss_pred hhhccccCCCCCccceeccCCC-CcccccccCCCCCCccCCCCCCCCCCCcCCcCCCCcHHHHHHHHHcCCCCCCHHHHH
Q 000107 453 IVHERKLDISSQGIDSITSDSP-TNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVE 531 (2191)
Q Consensus 453 ~~~~~e~~~~~~y~i~v~Sd~w-~~e~~~pi~~~~~~e~~~P~~~~~~~e~l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~e 531 (2191)
..+..+ ++++++.++..+++| ..+...|++++. .+.|....+.++.+++.+.-...+....-..-+..+.|.|.+
T Consensus 859 ~ipis~-pLps~~~~~~~s~~~l~~e~~~~~s~~~---~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~~fn~~q~~ 934 (1230)
T KOG0952|consen 859 TIPISD-PLPSQIRHRAVSDNWLGAETVYPLSFQH---LILPDNEPPLTELLDLRPLPSSALKNVVFEALYKYFNPIQTQ 934 (1230)
T ss_pred Eeeccc-CCccceEEeeecccccCCceeccccccc---eeccccccccccccccCCCcchhhccccHHHhhcccCCccce
Confidence 344444 688999999999999 999999999998 999999999999999988422222221111113367789999
Q ss_pred hhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC
Q 000107 532 CLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG 610 (2191)
Q Consensus 532 al~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~ 610 (2191)
.|.. .+....|+++.+|||+|||++|++++.+.+.. .+.+++||.|.++|+.+...+|......-|+++....|+...
T Consensus 935 if~~-~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~p 1013 (1230)
T KOG0952|consen 935 IFHC-LYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTP 1013 (1230)
T ss_pred EEEE-EeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCC
Confidence 8875 24468999999999999999999999987765 467999999999999999999988776669999999888755
Q ss_pred C-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 000107 611 G-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGT 689 (2191)
Q Consensus 611 ~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~ 689 (2191)
. .-..+.+|+|+||++++.+.+.|-....+++++++|+||+|++++. ||+.+|.+..+..++..
T Consensus 1014 d~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~-------------- 1078 (1230)
T KOG0952|consen 1014 DVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISS-------------- 1078 (1230)
T ss_pred ChhheecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCcc--------------
Confidence 4 2234689999999999999999988899999999999999999985 99999999888865432
Q ss_pred CCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc-c--cccccccccceEEEEecccc-ccchhhHHHHHHHhhccCCCCh
Q 000107 690 SSGKADPAHGLQIVGMSATMPNVAAVADWLQAA-L--YETNFRPVPLEEYIKVGNAI-YSKKMDVVRTILTAANLGGKDP 765 (2191)
Q Consensus 690 ~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~-l--~~~~~RpvpL~e~i~~~~~~-~~~~~~~~r~l~~~~~~~~~d~ 765 (2191)
.....+|++++|--+.|..++++||+.. . |.+..||+|++.++...... |...+..+ .+
T Consensus 1079 -----~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~sm---nk--------- 1141 (1230)
T KOG0952|consen 1079 -----QTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSM---NK--------- 1141 (1230)
T ss_pred -----ccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhc---cc---------
Confidence 2357899999999999999999999965 3 56788999999998743332 22221110 00
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
...+.+ ....+..++|||+.++++....|..|...+.......+.......+++-.+...+ |..|+.++++|
T Consensus 1142 -pa~qai-k~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~~~~------d~~Lk~tl~Fg 1213 (1230)
T KOG0952|consen 1142 -PAFQAI-KTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMSKVR------DTNLKLTLPFG 1213 (1230)
T ss_pred -HHHHHH-hcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHHHhc------ccchhhhhhhh
Confidence 111111 2345668999999999999888888877654322111111111223333333333 88999999999
Q ss_pred EEEEcCCCCHHHHHHH
Q 000107 846 VAYHHAGLTVEEREVV 861 (2191)
Q Consensus 846 Va~hHagLs~~eR~~V 861 (2191)
++.||+||...+|..+
T Consensus 1214 i~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1214 IGLHHAGLIENDRKIV 1229 (1230)
T ss_pred hhhhhhhccccccccC
Confidence 9999999999888654
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=216.11 Aligned_cols=307 Identities=21% Similarity=0.321 Sum_probs=218.1
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
+|++.|+.+-+. ..+.+.++.++.|-||+|||... ...+...++.|.++.+..|++..|.|.+.+++..|. +..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~--~~~I 173 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS--NCDI 173 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc--cCCe
Confidence 788888876543 11446799999999999999775 345566777899999999999999999999998776 4556
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
..+||+... ... ..++|||...+..+- +.++++||||+|-.--. -...+...+.+-+.
T Consensus 174 ~~Lyg~S~~--~fr-~plvVaTtHQLlrFk---------~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark--------- 231 (441)
T COG4098 174 DLLYGDSDS--YFR-APLVVATTHQLLRFK---------QAFDLLIIDEVDAFPFS-DDQSLQYAVKKARK--------- 231 (441)
T ss_pred eeEecCCch--hcc-ccEEEEehHHHHHHH---------hhccEEEEecccccccc-CCHHHHHHHHHhhc---------
Confidence 778887643 222 689999988854432 34799999999986421 23445554444432
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHH-HHhhcccc------ccccccccceEEEEeccccccchhhHHHHH
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVA-DWLQAALY------ETNFRPVPLEEYIKVGNAIYSKKMDVVRTI 754 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la-~wL~a~l~------~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l 754 (2191)
..--+|.||||.++ .+. +.+...+. ..-.+|.|+..++..++- .+ .+
T Consensus 232 ----------------~~g~~IylTATp~k--~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~--~k------~l 285 (441)
T COG4098 232 ----------------KEGATIYLTATPTK--KLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNW--NK------KL 285 (441)
T ss_pred ----------------ccCceEEEecCChH--HHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccH--HH------Hh
Confidence 22347999999663 222 22222221 122345555555554421 11 11
Q ss_pred HHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCC
Q 000107 755 LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGL 834 (2191)
Q Consensus 755 ~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gl 834 (2191)
. ...-+..+...+......+.++|||+|+....+.+|..|.+.++..
T Consensus 286 ~-----r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~---------------------------- 332 (441)
T COG4098 286 Q-----RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE---------------------------- 332 (441)
T ss_pred h-----hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc----------------------------
Confidence 1 1223446777888888889999999999999999998886544221
Q ss_pred ChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCc--ccCccccccccc
Q 000107 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRD--FIDGTRYRQMAG 912 (2191)
Q Consensus 835 d~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~--~is~~~y~QmiG 912 (2191)
.+++.|+. ...|.+..++||+|.+++|++|++|+|||++|.+.|.+ .|.+ .++.+..+|++|
T Consensus 333 ----------~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V----lgaeh~vfTesaLVQIaG 396 (441)
T COG4098 333 ----------TIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV----LGAEHRVFTESALVQIAG 396 (441)
T ss_pred ----------ceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE----ecCCcccccHHHHHHHhh
Confidence 16778875 46789999999999999999999999999999999876 4433 367888999999
Q ss_pred ccCCCCCCCceEEEEEeC
Q 000107 913 RAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 913 RAGR~G~d~~Ge~ill~~ 930 (2191)
|+||.--...|.++.|-.
T Consensus 397 RvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 397 RVGRSLERPTGDVLFFHY 414 (441)
T ss_pred hccCCCcCCCCcEEEEec
Confidence 999987667788776643
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=246.96 Aligned_cols=301 Identities=17% Similarity=0.281 Sum_probs=226.0
Q ss_pred cCCCCCCHHHHHhhhhccccc------CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHH
Q 000107 520 RGISKLYPWQVECLHVDGVLQ------RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~------gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
++| .-||=|..||.. +.. -.+=+|||.-|-|||-||+=++...+. .|+++.+++||.-||+|.++.|++.
T Consensus 591 FPy-eET~DQl~AI~e--Vk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 591 FPY-EETPDQLKAIEE--VKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred CCC-cCCHHHHHHHHH--HHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHhHHHHHHHHHHH
Confidence 444 456778888864 442 268899999999999999999888776 5899999999999999999999999
Q ss_pred hhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHH
Q 000107 594 LEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 594 ~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
|..++++|..+.--.+... .....||+|+|-- |+. ....+.+++++||||-|+ ||..-..
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~---kdv~FkdLGLlIIDEEqR-----FGVk~KE 734 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS---KDVKFKDLGLLIIDEEQR-----FGVKHKE 734 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC---CCcEEecCCeEEEechhh-----cCccHHH
Confidence 9999999887643322111 2345899999953 333 455789999999999999 4544455
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc-CCCHHHHH-HHhhcc----ccccccccccceEEEEe
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT-MPNVAAVA-DWLQAA----LYETNFRPVPLEEYIKV 739 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT-L~N~~~la-~wL~a~----l~~~~~RpvpL~e~i~~ 739 (2191)
-|..|+ .++.++-|||| +|. .+. ...|.. +-.+.-+..|++.|+..
T Consensus 735 kLK~Lr--------------------------~~VDvLTLSATPIPR--TL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~ 786 (1139)
T COG1197 735 KLKELR--------------------------ANVDVLTLSATPIPR--TLNMSLSGIRDLSVIATPPEDRLPVKTFVSE 786 (1139)
T ss_pred HHHHHh--------------------------ccCcEEEeeCCCCcc--hHHHHHhcchhhhhccCCCCCCcceEEEEec
Confidence 455553 56889999999 332 221 222221 11333444555555541
Q ss_pred ccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhh
Q 000107 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819 (2191)
Q Consensus 740 ~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~ 819 (2191)
.++..+.+.+...+..|+++-.-+|.....+.++..|.+..+..
T Consensus 787 -----------------------~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa------------- 830 (1139)
T COG1197 787 -----------------------YDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA------------- 830 (1139)
T ss_pred -----------------------CChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce-------------
Confidence 23334444555555678999999999999999999998766431
Q ss_pred hHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE-ee-cCCC
Q 000107 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI-FR-QPRI 897 (2191)
Q Consensus 820 ~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV-I~-~p~~ 897 (2191)
.|++-||.|+..+-+.|...|-+|..+|||||.+.+.|||||+.+-+ |+ .+++
T Consensus 831 -------------------------rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 831 -------------------------RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred -------------------------EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 28899999999999999999999999999999999999999997654 43 3444
Q ss_pred CCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 898 g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
-.++..|..||.||.. ..|.||+++.+.
T Consensus 886 -----GLsQLyQLRGRVGRS~--~~AYAYfl~p~~ 913 (1139)
T COG1197 886 -----GLAQLYQLRGRVGRSN--KQAYAYFLYPPQ 913 (1139)
T ss_pred -----cHHHHHHhccccCCcc--ceEEEEEeecCc
Confidence 4678899999999998 799999999863
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=226.99 Aligned_cols=293 Identities=16% Similarity=0.229 Sum_probs=191.3
Q ss_pred EEEEEchhHHHHHHHHHHHHHHhhcc---CCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccc
Q 000107 572 MALLVLPYVSICAEKAEHLEVLLEPL---GRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644 (2191)
Q Consensus 572 kaL~I~P~raLA~q~~~~l~~l~~~l---g~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~ 644 (2191)
.+||+-|.|+|+.|.+..++++-..+ .++-..+.|+... ..+..+++|+|+||+++..+++. ....+..+.
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeeeeE
Confidence 68999999999999999776653322 2222233443211 23556799999999999999886 555788899
Q ss_pred eEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHH-----
Q 000107 645 IIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVAD----- 717 (2191)
Q Consensus 645 lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~----- 717 (2191)
++|+||++.+...+....+..+...++.+... ...+|.+..|||+.- +..+++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsd--------------------g~rlq~~vCsatlh~feVkk~~ervmhf 425 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD--------------------GFRLQSPVCSATLHIFEVKKVGERVMHF 425 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcC--------------------CcccccceeeeEEeEEEeeehhhhhccC
Confidence 99999999998776666677777777666421 356899999999852 333332
Q ss_pred --HhhccccccccccccceEEEEeccccccchhhHHHHHHHhh-----------ccCCCChhHHHHHHHH-----HHh--
Q 000107 718 --WLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA-----------NLGGKDPDHIVELCDE-----VVQ-- 777 (2191)
Q Consensus 718 --wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~-----------~~~~~d~d~l~~Ll~e-----~~~-- 777 (2191)
|.+- -..+.-|-.....+..-..........++...... ......+.....++.- .++
T Consensus 426 ptwVdL--kgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h 503 (725)
T KOG0349|consen 426 PTWVDL--KGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH 503 (725)
T ss_pred ceeEec--ccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh
Confidence 2211 01111111111111111111111111111111100 0011111111111110 011
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.-.++||||.|+..|..+-+.+.+... -.+.+..+|++..+.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg-------------------------------------~~~scvclhgDrkP~E 546 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGG-------------------------------------KHYSCVCLHGDRKPDE 546 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCC-------------------------------------ccceeEEEecCCChhH
Confidence 125899999999999988877754221 1234788999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
|+.-++.|+.+.++.||||+++++|+||.++-++|+...+. +...|.||+||.||+- +.|.+|.++..
T Consensus 547 rk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd----~k~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 547 RKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD----DKTNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred HHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc----ccchhhhhhhccchhh--hcceeEEEeec
Confidence 99999999999999999999999999999999999977766 7889999999999987 68888876543
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=217.68 Aligned_cols=173 Identities=25% Similarity=0.284 Sum_probs=148.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~ 584 (2191)
+++.+.+.+.+.|++.|+++|.++++. +..|+|+++++|||+|||++|.++++..+... +.++||++|+++|+.
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~ 83 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPP--LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELAL 83 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHH
Confidence 778899999999999999999999987 88899999999999999999999999988764 568999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchh
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG 660 (2191)
|+...+..+....++.+..++|+.... ....+.+|+||||+++..++.+ ....+.+++++|+||+|.+.+.+++
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~l~~lIvDE~h~~~~~~~~ 161 (203)
T cd00268 84 QIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER--GKLDLSKVKYLVLDEADRMLDMGFE 161 (203)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCCChhhCCEEEEeChHHhhccChH
Confidence 999999988777788888888876431 1334689999999999888876 3467889999999999999887778
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 661 ~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
..+..++..+ ..+.|++++|||+++
T Consensus 162 ~~~~~~~~~l--------------------------~~~~~~~~~SAT~~~ 186 (203)
T cd00268 162 DQIREILKLL--------------------------PKDRQTLLFSATMPK 186 (203)
T ss_pred HHHHHHHHhC--------------------------CcccEEEEEeccCCH
Confidence 7777776655 246899999999984
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=233.90 Aligned_cols=306 Identities=25% Similarity=0.320 Sum_probs=193.2
Q ss_pred CCCCHHHHHhhhhccccc----CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 523 SKLYPWQVECLHVDGVLQ----RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~----gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..|+++|.+++.. +.. ++..++++|||+|||.++...+-.. +.++|||+|+.+|+.|..+.+...+.. +
T Consensus 35 ~~lr~yQ~~al~a--~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~-~ 107 (442)
T COG1061 35 FELRPYQEEALDA--LVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----KRSTLVLVPTKELLDQWAEALKKFLLL-N 107 (442)
T ss_pred CCCcHHHHHHHHH--HHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----cCCEEEEECcHHHHHHHHHHHHHhcCC-c
Confidence 3699999999986 666 8999999999999999987665432 445999999999999998777665432 1
Q ss_pred CeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 599 RHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
..++.+.|+... ... ..|.|+|...+...- .+......++++||+||+|+++... ...++..+.
T Consensus 108 ~~~g~~~~~~~~--~~~-~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~------- 171 (442)
T COG1061 108 DEIGIYGGGEKE--LEP-AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLS------- 171 (442)
T ss_pred cccceecCceec--cCC-CcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH----HHHHHHhhh-------
Confidence 133333333211 111 479999988754421 1222334479999999999987542 233333331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCce-EEEEeccCC-----CHHHHHHHhhccccccccc-------cccceEEE-Eecccc-
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQ-IVGMSATMP-----NVAAVADWLQAALYETNFR-------PVPLEEYI-KVGNAI- 743 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iq-II~mSATL~-----N~~~la~wL~a~l~~~~~R-------pvpL~e~i-~~~~~~- 743 (2191)
... ++|||||++ +..++...++...|...+. -.|...+. ......
T Consensus 172 --------------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~ 231 (442)
T COG1061 172 --------------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTED 231 (442)
T ss_pred --------------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchH
Confidence 122 899999965 2445555555333322211 11211111 110000
Q ss_pred ----ccchhhHHHH-------------HHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 744 ----YSKKMDVVRT-------------ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 744 ----~~~~~~~~r~-------------l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
+......... ..............+..++.... .+.+++|||.++..+..++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~----- 305 (442)
T COG1061 232 EEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLA----- 305 (442)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcC-----
Confidence 0000000000 00000000111112222222222 467999999999998887766622
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP 886 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLP 886 (2191)
+-++..+.+..+..||..+++.|+.|.+++||++.++..|+|+|
T Consensus 306 ------------------------------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP 349 (442)
T COG1061 306 ------------------------------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIP 349 (442)
T ss_pred ------------------------------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCC
Confidence 01167789999999999999999999999999999999999999
Q ss_pred CceEEeecCCCCCcccCcccccccccccCCC
Q 000107 887 ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 887 av~VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
++.++|-....+ |...|.||+||.-|.
T Consensus 350 ~~~~~i~~~~t~----S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 350 DADVLIILRPTG----SRRLFIQRLGRGLRP 376 (442)
T ss_pred CCcEEEEeCCCC----cHHHHHHHhhhhccC
Confidence 999877433344 788999999999995
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=240.07 Aligned_cols=332 Identities=16% Similarity=0.194 Sum_probs=187.3
Q ss_pred CCCHHHHHhhhhcccc----c-CCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 524 KLYPWQVECLHVDGVL----Q-RRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il----~-gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
.++++|.+||.. +. . .++.++++|||||||.++...+ ..++. ..+++||++|+++|+.|..+.|..+...
T Consensus 413 ~lR~YQ~~AI~a--i~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQA--VEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHH--HHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 589999999965 33 2 4789999999999999865444 44443 3469999999999999999988875322
Q ss_pred cCCeEEEEeccCC--CCCCCCCCceEEEchHHHHHHHHHhh---hcCCCCccceEEEcccccccc-------cchh-HHH
Q 000107 597 LGRHVRSYYGNQG--GGSLPKDTSVAVCTIEKANSLVNRML---EEGRLSEIGIIVIDELHMVAD-------QNRG-YLL 663 (2191)
Q Consensus 597 lg~~V~~~~G~~~--~~~l~~~~~IiV~TpEkl~~Ll~~l~---~~~~L~~l~lVVIDEaH~l~d-------~~RG-~~l 663 (2191)
.+..+...++... ......+..|+|||+.++...+.... ....+..+++|||||+|+-.. ...+ ...
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 2211111222111 11123457899999998655432110 113567889999999998421 0000 000
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccccccc-------ccc----c
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNF-------RPV----P 732 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~-------Rpv----p 732 (2191)
.....+.+.+.. ..+..+||||||.. ..-..++|..++..++ --+ |
T Consensus 570 ~~~~~~yr~iL~---------------------yFdA~~IGLTATP~--r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p 626 (1123)
T PRK11448 570 LDYVSKYRRVLD---------------------YFDAVKIGLTATPA--LHTTEIFGEPVYTYSYREAVIDGYLIDHEPP 626 (1123)
T ss_pred hhHHHHHHHHHh---------------------hcCccEEEEecCCc--cchhHHhCCeeEEeeHHHHHhcCCcccCcCC
Confidence 001112222111 01245799999953 2334455543321111 011 2
Q ss_pred ceEEEEec--ccc---------ccchhhHHH--HHHHhhccCC-------CChh---HHHHHHHHHHh--cCCcEEEEeC
Q 000107 733 LEEYIKVG--NAI---------YSKKMDVVR--TILTAANLGG-------KDPD---HIVELCDEVVQ--EGHSVLIFCS 787 (2191)
Q Consensus 733 L~e~i~~~--~~~---------~~~~~~~~r--~l~~~~~~~~-------~d~d---~l~~Ll~e~~~--~g~~vLVF~~ 787 (2191)
........ +.. +......+. .+........ ...+ .+..-+.+.+. .++++||||.
T Consensus 627 ~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~ 706 (1123)
T PRK11448 627 IRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAA 706 (1123)
T ss_pred EEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 22111100 000 000000000 0000000000 0011 11111112222 2379999999
Q ss_pred chhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhc
Q 000107 788 SRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK 867 (2191)
Q Consensus 788 Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~ 867 (2191)
++..|+.++..|.+.+....... -...|..+||+.+ ++..+++.|++
T Consensus 707 s~~HA~~i~~~L~~~f~~~~~~~-------------------------------~~~~v~~itg~~~--~~~~li~~Fk~ 753 (1123)
T PRK11448 707 TDAHADMVVRLLKEAFKKKYGQV-------------------------------EDDAVIKITGSID--KPDQLIRRFKN 753 (1123)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCc-------------------------------CccceEEEeCCcc--chHHHHHHHhC
Confidence 99999999988876542210000 0112555788774 56789999999
Q ss_pred CCc-eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCC
Q 000107 868 GLV-RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG 918 (2191)
Q Consensus 868 G~i-kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G 918 (2191)
+.. +|+|+++++.+|+|+|.+.+||-...+. |...|+||+||+.|..
T Consensus 754 ~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk----S~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 754 ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR----SRILYEQMLGRATRLC 801 (1123)
T ss_pred CCCCeEEEEecccccCCCcccccEEEEecCCC----CHHHHHHHHhhhccCC
Confidence 987 7999999999999999988776433333 7888999999999986
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=227.83 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. .+|+.|.-.- +.-.+--|..++||+|||++|.+|++..++ .|+.+++|+|++.||.|.++++..++..+|+
T Consensus 79 lg~-~~ydvQliGg----~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 79 LGL-RHFDVQLIGG----MVLHEGNIAEMRTGEGKTLVATLPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred cCC-CcchHHHhhh----hhhccCccccccCCCCchHHHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 554 6777776542 222334478999999999999999997776 4677999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhhhc----CCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRMLEE----GRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~~~----~~L~~l~lVVIDEaH~l~ 655 (2191)
+|..++|+..... ..-.++|+|+||+++ .++++.-+.. .....+.++||||+|.|.
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999998754311 112479999999998 7777642111 122579999999999775
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=228.15 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=97.5
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHH
Q 000107 779 GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858 (2191)
Q Consensus 779 g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR 858 (2191)
+.++||||+++..+..++..|... .++.++.+||+|+..+|
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~---------------------------------------~Gi~~~~ihG~~s~~eR 533 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER---------------------------------------EGIRAAVFHEGMSIIER 533 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc---------------------------------------cCeeEEEEECCCCHHHH
Confidence 579999999999998888777431 11237789999999999
Q ss_pred HHHHHHhhcC--CceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh-hHH
Q 000107 859 EVVETCYRKG--LVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVK 935 (2191)
Q Consensus 859 ~~Ve~~Fr~G--~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~ 935 (2191)
+.+.+.|+++ ..+|||||.++++|+|++.+.+||+++.+. ++..|.||+||+||.|....-.+++++... ..+
T Consensus 534 ~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~----nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e 609 (956)
T PRK04914 534 DRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF----NPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQE 609 (956)
T ss_pred HHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC----CHHHHHHHhcccccCCCCceEEEEEccCCCCHHH
Confidence 9999999974 699999999999999999999999887765 889999999999999955444444444432 234
Q ss_pred HHHhhhccCCC
Q 000107 936 KIMGLLNESCP 946 (2191)
Q Consensus 936 ~~~~ll~~~l~ 946 (2191)
.+.+++...+.
T Consensus 610 ~i~~~~~~~l~ 620 (956)
T PRK04914 610 RLFRWYHEGLN 620 (956)
T ss_pred HHHHHHhhhcC
Confidence 44455555443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=200.85 Aligned_cols=157 Identities=25% Similarity=0.395 Sum_probs=130.7
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY 604 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~ 604 (2191)
||+|.++++. +.+|+++++.||||+|||+++.++++..+.+. ..+++|++|+++|+.|+++++..++...+.++..+
T Consensus 1 t~~Q~~~~~~--i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEA--IISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHH--HHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred CHHHHHHHHH--HHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc
Confidence 6899999987 77999999999999999999999999988775 34999999999999999999999988878888888
Q ss_pred eccCCCC-----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 605 YGNQGGG-----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 605 ~G~~~~~-----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
+|+.... .+..+++|+|+||+++..+++. ....+.++++|||||+|.+.+..++..+..++..++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~------ 150 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISN--GKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF------ 150 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--TSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT------
T ss_pred cccccccccccccccccccccccCcchhhccccc--cccccccceeeccCcccccccccHHHHHHHHHHHhcCC------
Confidence 8876421 1224689999999999988876 22356679999999999999877777777777765321
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCC
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMP 710 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~ 710 (2191)
.+.|+|+||||++
T Consensus 151 ------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 151 ------------------KNIQIILLSATLP 163 (169)
T ss_dssp ------------------TTSEEEEEESSST
T ss_pred ------------------CCCcEEEEeeCCC
Confidence 3589999999987
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=222.59 Aligned_cols=355 Identities=17% Similarity=0.208 Sum_probs=208.7
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. .+|+.|.-.--. +.+|+ |.-..||+|||+++.++++...+ .|..+-+++|+-.||.+-++++..++..+|+
T Consensus 77 ~g~-~~~dvQlig~l~--l~~G~--iaEm~TGEGKTLvA~l~a~l~al-~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIV--LHEGN--IAEMKTGEGKTLTATLPVYLNAL-TGKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHH--HhcCC--cccccCCCCCcHHHHHHHHHHHH-cCCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 565 788888766433 45565 88999999999999999987776 5888999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHHH-HHHH-Hhh---hcCCCCccceEEEccccccc-ccchhH----------
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKAN-SLVN-RML---EEGRLSEIGIIVIDELHMVA-DQNRGY---------- 661 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl~-~Ll~-~l~---~~~~L~~l~lVVIDEaH~l~-d~~RG~---------- 661 (2191)
+|+...|+..... ..-.++|+++|...+- +.++ ++. +......+.+.||||+|-+. |..|.+
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 9998887643211 1125799999987652 2333 211 12234567899999999664 322221
Q ss_pred --HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEec----------cCCC---H--HHHHHHhhcc--
Q 000107 662 --LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSA----------TMPN---V--AAVADWLQAA-- 722 (2191)
Q Consensus 662 --~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSA----------TL~N---~--~~la~wL~a~-- 722 (2191)
.+..+...++.+...... .+...+...+. .....-+.|.++. .++| . ..+..|+...
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~---~~~~~~~~~dy-~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAE---DGDDDEDTGDY-KIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhc---cccccCCCCce-EEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 111111111111110000 00000000000 0000001111110 0111 0 0122332200
Q ss_pred ---cc-----------------cccccccc-------------------ce----------------EEEE---eccccc
Q 000107 723 ---LY-----------------ETNFRPVP-------------------LE----------------EYIK---VGNAIY 744 (2191)
Q Consensus 723 ---l~-----------------~~~~Rpvp-------------------L~----------------e~i~---~~~~~~ 744 (2191)
+| ....|..| ++ .|-+ ..++.-
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 00 00111110 00 0000 001100
Q ss_pred cchhhHHHHHHHh-------------------hc-cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHh
Q 000107 745 SKKMDVVRTILTA-------------------AN-LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK 804 (2191)
Q Consensus 745 ~~~~~~~r~l~~~-------------------~~-~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~ 804 (2191)
... .....++.. .. ........+...+.+....+.++||||+|+..++.++..|.+.
T Consensus 387 ~e~-~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~-- 463 (796)
T PRK12906 387 TEE-EEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA-- 463 (796)
T ss_pred HHH-HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC--
Confidence 000 000111000 00 0001223455555555667899999999999999888887552
Q ss_pred hcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCC
Q 000107 805 KFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884 (2191)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVN 884 (2191)
+. ....+||.+...|+..|..+++.|. |+|||++++||+|
T Consensus 464 --gi------------------------------------~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtD 503 (796)
T PRK12906 464 --GI------------------------------------PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTD 503 (796)
T ss_pred --CC------------------------------------CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCC
Confidence 11 1567999999999999999999996 9999999999999
Q ss_pred CC---Cce-----EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 885 LP---ARR-----VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 885 LP---av~-----VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|+ .+. +||.+.++. +...|.|++|||||.| .+|.+..+++.+|
T Consensus 504 I~l~~~V~~~GGLhVI~te~pe----s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD 554 (796)
T PRK12906 504 IKLGPGVKELGGLAVIGTERHE----SRRIDNQLRGRSGRQG--DPGSSRFYLSLED 554 (796)
T ss_pred CCCCcchhhhCCcEEEeeecCC----cHHHHHHHhhhhccCC--CCcceEEEEeccc
Confidence 95 788 899877765 7778999999999999 8999999987653
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=216.20 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=100.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-.--. +.+|+ |..++||+|||++|.+|++-..+ .|+.+-+++|+..||.+.++++..++..+|+
T Consensus 78 lg~-~~~dvQlig~l~--L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV--LHEGK--IAEMKTGEGKTLVATLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHH--hcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 565 788888765432 44554 88999999999999999964444 3667889999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhhh----cCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRMLE----EGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~~----~~~L~~l~lVVIDEaH~l~ 655 (2191)
+|+...|+..... ..-.++|+++|+..+ .++++..+. ...+..+.++||||+|.|.
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999988754321 112479999999998 777764321 1236778999999999764
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=225.42 Aligned_cols=322 Identities=23% Similarity=0.254 Sum_probs=199.7
Q ss_pred CCCHHHHHhhhhcccc---cCC-eEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 524 KLYPWQVECLHVDGVL---QRR-NLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il---~gk-nlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
..+++|..++.. +. ... .+++.||||+|||++++.+++..... ...+++++.|+++++.++++++...+..
T Consensus 195 ~~~~~~~~~~~~--~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 195 EGYELQEKALEL--ILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhhHHHHHHHHH--HHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 348899999875 33 234 89999999999999999988877666 3679999999999999999999887654
Q ss_pred cCCeEEEEeccCCCCCC--C----------------CCCceEEEchHHHHHHHHHhhhcCCC--CccceEEEcccccccc
Q 000107 597 LGRHVRSYYGNQGGGSL--P----------------KDTSVAVCTIEKANSLVNRMLEEGRL--SEIGIIVIDELHMVAD 656 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~~l--~----------------~~~~IiV~TpEkl~~Ll~~l~~~~~L--~~l~lVVIDEaH~l~d 656 (2191)
.+.....++|....... + .-..+.++||-......-.......+ -..+++|+||+|++.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 43322212333221000 0 01345555555433211100000001 1247999999999987
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhccccc-cccccccc
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAALYE-TNFRPVPL 733 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~l~~-~~~RpvpL 733 (2191)
...-..+..++..+.. .+..+|+||||+|. .+.+...++..... ......+.
T Consensus 353 ~~~~~~l~~~i~~l~~-------------------------~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~ 407 (733)
T COG1203 353 ETMLAALLALLEALAE-------------------------AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPK 407 (733)
T ss_pred cchHHHHHHHHHHHHh-------------------------CCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccc
Confidence 6322223333333322 35689999999985 22233333221100 00000000
Q ss_pred eEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCC
Q 000107 734 EEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~ 813 (2191)
......... ...... .. ........+.+.+..+++++|-|||++.|..+...|.....
T Consensus 408 ~~e~~~~~~---~~~~~~----~~------~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------- 465 (733)
T COG1203 408 EDEPGLKRK---ERVDVE----DG------PQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------- 465 (733)
T ss_pred ccccccccc---cchhhh----hh------hhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------
Confidence 000000000 000000 00 00123344455667889999999999999988888754211
Q ss_pred CchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhh----cCCceEEEecccccccCCCCCce
Q 000107 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR----KGLVRVLTATSTLAAGVNLPARR 889 (2191)
Q Consensus 814 ~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr----~G~ikVLVATstLa~GVNLPav~ 889 (2191)
.+..+||.++..+|...++.++ .+...|+|||++.+.|||+...
T Consensus 466 -------------------------------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd- 513 (733)
T COG1203 466 -------------------------------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD- 513 (733)
T ss_pred -------------------------------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC-
Confidence 2888999999999998888654 5678999999999999999844
Q ss_pred EEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 890 VIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 890 VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
++|. +.-++.+.+||+||++|.|.+..|..+++....
T Consensus 514 ~mIT------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 514 VLIT------ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eeee------cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 4442 233667899999999999987788888876553
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=211.40 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=115.3
Q ss_pred CcHHHHHHHH-----HcCCCCC---CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 509 LPSEICSIYK-----KRGISKL---YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~-----~~Gi~~l---~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
+..++...+. ..||..| +|+|.++++. +..++++|..++||+|||++|.+|++..++. +..+++|+|++
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~--i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-g~~v~IVTpTr 145 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGA--IAMHKGFITEMQTGEGKTLTAVMPLYLNALT-GKPVHLVTVND 145 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhh--hhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-cCCeEEEeCCH
Confidence 4455555544 5788888 9999999976 8889999999999999999999999988774 45689999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhhhcCCC-------CccceEEEcc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRMLEEGRL-------SEIGIIVIDE 650 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~~~~~L-------~~l~lVVIDE 650 (2191)
+||.|.++.+..++..+|++|..++|+..... ..-.++|+|+||+++ .++++.- ...+ ..+.++||||
T Consensus 146 ELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~--~~~~~~~~~vqr~~~~~IIDE 223 (970)
T PRK12899 146 YLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDN--SIATRKEEQVGRGFYFAIIDE 223 (970)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCC--CCCcCHHHhhcccccEEEEec
Confidence 99999999999999999999999998765321 011489999999999 8888752 1222 3568999999
Q ss_pred ccccc
Q 000107 651 LHMVA 655 (2191)
Q Consensus 651 aH~l~ 655 (2191)
+|.|.
T Consensus 224 ADsmL 228 (970)
T PRK12899 224 VDSIL 228 (970)
T ss_pred hhhhh
Confidence 99775
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=209.52 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=99.6
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. .+|+.|.-. ++.-.+.-|..++||.|||++|.+|++...+ .|+.+.||+|+..||.+-++++..++..+|+
T Consensus 79 lgm-~~ydVQliG----gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 79 FEM-RHFDVQLLG----GMVLDSNRIAEMRTGEGKTLTATLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred hCC-CcCchHHhc----chHhcCCccccccCCCCchHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 455 678888643 2333445588999999999999999987766 4677999999999999999999999999999
Q ss_pred eEEEEeccCCCCC-CC-CCCceEEEchHHH-HHHHHHhhh----cCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS-LP-KDTSVAVCTIEKA-NSLVNRMLE----EGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~-l~-~~~~IiV~TpEkl-~~Ll~~l~~----~~~L~~l~lVVIDEaH~l~ 655 (2191)
+|....++..... .. -.++|+++|+..+ .++++.-+. ......+.++||||+|.+.
T Consensus 153 sv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 153 TVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred eEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9998888654311 11 1579999999998 666664221 1123678999999999765
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=197.73 Aligned_cols=354 Identities=18% Similarity=0.246 Sum_probs=212.2
Q ss_pred CCCCHHHHHhhhhcccccC----CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 523 SKLYPWQVECLHVDGVLQR----RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~g----knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..+++-|..++.. +... ...++.+.||||||.+|+-++- ..+..|+.+|+++|-.+|..|+..+|+..| |
T Consensus 197 ~~Ln~~Q~~a~~~--i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~-~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEA--ILSSLGGFAPFLLDGVTGSGKTEVYLEAIA-KVLAQGKQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHH--HHHhcccccceeEeCCCCCcHHHHHHHHHH-HHHHcCCEEEEEeccccchHHHHHHHHHHh---C
Confidence 3678889998875 5433 7899999999999999976554 556689999999999999999999998877 4
Q ss_pred CeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHH
Q 000107 599 RHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELL 666 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~l 666 (2191)
.+|.+++++.+.+. ......|+|+|--.+ ...+.++++|||||=|.-.-. -|...-+..
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh---------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 77888888765532 335689999995432 225789999999999986521 133333443
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc--cccccc---cc-ccceEEEEec
Q 000107 667 LTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA--LYETNF---RP-VPLEEYIKVG 740 (2191)
Q Consensus 667 L~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~--l~~~~~---Rp-vpL~e~i~~~ 740 (2191)
+-+-+. .++++|+-||| |.++.+..-.... .+.-.. +. .|-...+...
T Consensus 342 ~~Ra~~-------------------------~~~pvvLgSAT-PSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr 395 (730)
T COG1198 342 VLRAKK-------------------------ENAPVVLGSAT-PSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMR 395 (730)
T ss_pred HHHHHH-------------------------hCCCEEEecCC-CCHHHHHhhhcCceEEEEccccccccCCCcceEEecc
Confidence 333321 46789999999 4555544443221 111011 11 1111112111
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc--------------
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF-------------- 806 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~-------------- 806 (2191)
...... +..-...+.+.+.+.+..+.++|+|+|.|.-+-.+...=+.+....
T Consensus 396 ~e~~~~--------------~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~ 461 (730)
T COG1198 396 KEPLET--------------GRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG 461 (730)
T ss_pred cccccc--------------CccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCC
Confidence 110000 0002345677788888889999999999875432222111111000
Q ss_pred ccccCCCC-c-hhh-hhHHHH-HHhhcCCCC---CChhhhhhc-CCcEEEEcCCCCHHH--HHHHHHHhhcCCceEEEec
Q 000107 807 SINVHSSD-S-EFI-DITSAI-DALRRCPAG---LDPVLEETL-PSGVAYHHAGLTVEE--REVVETCYRKGLVRVLTAT 876 (2191)
Q Consensus 807 ~~~~~~~~-~-~~~-~~~~~~-~~L~~~~~g---ld~~L~~~l-~~GVa~hHagLs~~e--R~~Ve~~Fr~G~ikVLVAT 876 (2191)
...++-.. . ... ..-+.- ..|+....| +.+.|...+ ...|+.+-++.+... -+..+..|.+|+.+|||.|
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 00000000 0 000 000000 001111111 122333444 345777777776543 3567889999999999999
Q ss_pred ccccccCCCCCceEE--eecCC--CCCcccC----cccccccccccCCCCCCCceEEEEEeChhh
Q 000107 877 STLAAGVNLPARRVI--FRQPR--IGRDFID----GTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 877 stLa~GVNLPav~VV--I~~p~--~g~~~is----~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.+++.|.|+|+++.| ++.+. ...++-. ...+.|-+|||||.+ ..|++++-+...+
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~ 604 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPD 604 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCC
Confidence 999999999998865 44321 1112212 235689999999997 6899998876544
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=195.02 Aligned_cols=326 Identities=17% Similarity=0.189 Sum_probs=197.0
Q ss_pred CCCHHHHHhhhhcccc----cCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 524 KLYPWQVECLHVDGVL----QRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il----~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
+|+++|.+.+.. +. .|.+.|++-..|.|||+.+...+ ..+.. ..+.+|||+|. ++..+..+++.+++.
T Consensus 169 ~Lr~YQleGlnW--Li~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p- 243 (1033)
T PLN03142 169 KMRDYQLAGLNW--LIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP- 243 (1033)
T ss_pred chHHHHHHHHHH--HHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC-
Confidence 789999999976 32 57889999999999999875433 33332 23578999996 666788888888764
Q ss_pred cCCeEEEEeccCCCC-------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHH
Q 000107 597 LGRHVRSYYGNQGGG-------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTK 669 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~-------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~k 669 (2191)
.+++..++|..... ......+|+|+|++.+..-...+. --..++|||||+|.|-.. ...+-..+..
T Consensus 244 -~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~----k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 244 -VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK----RFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred -CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc----cCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 35667777764321 123457899999998654332221 124689999999998753 2222233333
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-C-CHHHHHHH---hhcccccc------------------
Q 000107 670 LRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-P-NVAAVADW---LQAALYET------------------ 726 (2191)
Q Consensus 670 Lr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~-N~~~la~w---L~a~l~~~------------------ 726 (2191)
++ ....++||+|. . |+.++... |...+|..
T Consensus 317 L~---------------------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e 369 (1033)
T PLN03142 317 FS---------------------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQE 369 (1033)
T ss_pred hh---------------------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHH
Confidence 31 12458899994 2 35554433 32221110
Q ss_pred -------cccc-------------cc--ceEEEEecccc-----ccch--------------h---hHHHHHHHhhc---
Q 000107 727 -------NFRP-------------VP--LEEYIKVGNAI-----YSKK--------------M---DVVRTILTAAN--- 759 (2191)
Q Consensus 727 -------~~Rp-------------vp--L~e~i~~~~~~-----~~~~--------------~---~~~r~l~~~~~--- 759 (2191)
..+| .| .+..+.+.... |... . ..+..+.....
T Consensus 370 ~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~ 449 (1033)
T PLN03142 370 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPY 449 (1033)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHH
Confidence 0001 11 11111111110 0000 0 00000000000
Q ss_pred c------------------CCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 760 L------------------GGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 760 ~------------------~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
+ .......+..++..+...+.+||||+........+. .++..
T Consensus 450 L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLe----d~L~~---------------- 509 (1033)
T PLN03142 450 LFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILE----DYLMY---------------- 509 (1033)
T ss_pred hhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHH----HHHHH----------------
Confidence 0 001111233444445556778888887554333222 22211
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhc---CCceEEEecccccccCCCCCceEEeecCCCC
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK---GLVRVLTATSTLAAGVNLPARRVIFRQPRIG 898 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~---G~ikVLVATstLa~GVNLPav~VVI~~p~~g 898 (2191)
..++...+||+++..+|..+++.|.. +..-+|++|...+.||||...++||.++..
T Consensus 510 --------------------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~d- 568 (1033)
T PLN03142 510 --------------------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSD- 568 (1033)
T ss_pred --------------------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCC-
Confidence 23447779999999999999999975 334678999999999999998888865543
Q ss_pred CcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 899 ~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.++....|++||+-|.|....-.+|.|+...
T Consensus 569 ---WNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 569 ---WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ---CChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 4888999999999999988777778777764
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=189.23 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
+.+.+...+...||+ ++|.|.+.+.. ..+.+++++++.||||+|||++|++|++.... .++++||.+||++|..|.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql 308 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQL 308 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHH
Confidence 334566677778885 88999975541 23567899999999999999999999987665 678999999999999998
Q ss_pred HH-HHHHHhhccC--CeEEEEe
Q 000107 587 AE-HLEVLLEPLG--RHVRSYY 605 (2191)
Q Consensus 587 ~~-~l~~l~~~lg--~~V~~~~ 605 (2191)
+. .+..+...++ +++..+.
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~k 330 (850)
T TIGR01407 309 LEKDIPLLNEILNFKINAALIK 330 (850)
T ss_pred HHHHHHHHHHHcCCCceEEEEE
Confidence 65 4544433333 4444333
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=181.25 Aligned_cols=415 Identities=18% Similarity=0.212 Sum_probs=249.2
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC----EEEEEchhHHHHHHHHHHH-HHHhhccCCeEEEEeccCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK----MALLVLPYVSICAEKAEHL-EVLLEPLGRHVRSYYGNQGGGS 612 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~----kaL~I~P~raLA~q~~~~l-~~l~~~lg~~V~~~~G~~~~~~ 612 (2191)
+.++..++|-+.||+|||..++..||..++..+. .+++..|++..+..+++++ ++.....|-.|+ |..+....
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvg--y~vRf~Sa 467 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCG--YNVRFDSA 467 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccc--cccccccc
Confidence 6678999999999999999999999999987542 5777889999998888877 334444443332 22222222
Q ss_pred CC-CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000107 613 LP-KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSS 691 (2191)
Q Consensus 613 l~-~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~ 691 (2191)
.+ +.-.|.+||-|-+.+... .-+..+.++|+||+|+ |...-+.++..++.+..
T Consensus 468 ~prpyg~i~fctvgvllr~~e-----~glrg~sh~i~deihe-----rdv~~dfll~~lr~m~~---------------- 521 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMME-----NGLRGISHVIIDEIHE-----RDVDTDFVLIVLREMIS---------------- 521 (1282)
T ss_pred ccccccceeeeccchhhhhhh-----hcccccccccchhhhh-----hccchHHHHHHHHhhhc----------------
Confidence 22 234799999998655443 2567889999999999 55555666666665542
Q ss_pred CCCCCCCCceEEEEeccCCCHHHHHHHhhcccc-cccc----------------------ccccceEEEEeccccc--cc
Q 000107 692 GKADPAHGLQIVGMSATMPNVAAVADWLQAALY-ETNF----------------------RPVPLEEYIKVGNAIY--SK 746 (2191)
Q Consensus 692 ~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~-~~~~----------------------RpvpL~e~i~~~~~~~--~~ 746 (2191)
..+.+++++||||+ |.+.+..+++.-.. .... ++.+.+.+........ +.
T Consensus 522 ----ty~dl~v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~dd 596 (1282)
T KOG0921|consen 522 ----TYRDLRVVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDD 596 (1282)
T ss_pred ----cchhhhhhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhh
Confidence 24678899999998 55666666652110 0011 1111111110000000 00
Q ss_pred h---hhHH-----HHHHHhhccCCCCh----hHHHHHHHHHHhc--CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 747 K---MDVV-----RTILTAANLGGKDP----DHIVELCDEVVQE--GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 747 ~---~~~~-----r~l~~~~~~~~~d~----d~l~~Ll~e~~~~--g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+ ...+ .............. ..+..++.....+ .+-++||.+.-.....+...+..+-.
T Consensus 597 K~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~-------- 668 (1282)
T KOG0921|consen 597 KGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE-------- 668 (1282)
T ss_pred cccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh--------
Confidence 0 0000 00000000000111 1122222222222 26799999987666555555533211
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
...+-.+-+...|+-++..++..|++....|..++|+.|.+++..+.+.++++||
T Consensus 669 -------------------------fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vi 723 (1282)
T KOG0921|consen 669 -------------------------FGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVI 723 (1282)
T ss_pred -------------------------hccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEE
Confidence 1112234477789999999999999999999999999999999999999988887
Q ss_pred ecCC--------------CCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccch
Q 000107 893 RQPR--------------IGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNG 958 (2191)
Q Consensus 893 ~~p~--------------~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~ 958 (2191)
+... ..+.|.+.....||.||+||.. +|.|+.+|....+..+.+-..+.+... -|+ .
T Consensus 724 d~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR---~G~~f~lcs~arF~~l~~~~t~em~r~--plh----e 794 (1282)
T KOG0921|consen 724 DSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR---PGFCFHLCSRARFEALEDHGTAEMFRT--PLH----E 794 (1282)
T ss_pred eeeeeeeeeeccccceeeeeeecccccchHhhcccCceec---ccccccccHHHHHHHHHhcCcHhhhcC--ccH----H
Confidence 6432 2234677788899999999986 899999999876666554433332211 111 1
Q ss_pred hhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCCh
Q 000107 959 MTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCP 1038 (2191)
Q Consensus 959 l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p 1038 (2191)
|...++-++++ .|..|+...+-.++ .+.+.++=..|...+.+..+ -..|+||+..++.++-|
T Consensus 795 malTikll~l~-------SI~~fl~kal~~~p------~dav~e~e~~l~~m~~ld~n-----~elt~lg~~la~l~iep 856 (1282)
T KOG0921|consen 795 IALTIKLLRLG-------SIGEFLGKALQPPP------YDAVIEAEAVLREMGALDAN-----DELTPLGRMLARLPIEP 856 (1282)
T ss_pred HHhhHHHHHhh-------hHHHHHhhccCCCc------hhhccCchHHHHHhhhhhcc-----CcccchhhhhhhccCcc
Confidence 22222222222 35555544432221 12233333345555665433 25899999999999999
Q ss_pred hhHHHHH
Q 000107 1039 EESLIVL 1045 (2191)
Q Consensus 1039 ~~a~~l~ 1045 (2191)
..+++++
T Consensus 857 ~~~k~~~ 863 (1282)
T KOG0921|consen 857 RIGKMMI 863 (1282)
T ss_pred cccceee
Confidence 8666543
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=177.18 Aligned_cols=293 Identities=23% Similarity=0.316 Sum_probs=195.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC--CCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP--KDT 617 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~--~~~ 617 (2191)
..+-++-+|||.||||.-|+ +++. .-++.+|.-|.|.||.|+++++.+. |+.+..++|........ ..+
T Consensus 190 ~RkIi~H~GPTNSGKTy~AL----qrl~-~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRAL----QRLK-SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred hheEEEEeCCCCCchhHHHH----HHHh-hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCCCCcc
Confidence 45677889999999997764 4443 3667899999999999999888765 77777777764322221 236
Q ss_pred ceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q 000107 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPA 697 (2191)
Q Consensus 618 ~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~ 697 (2191)
..+=||-|++.- -..+++.||||++||.|..||..+...|--+. .
T Consensus 261 ~hvScTVEM~sv----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~-------------------------A 305 (700)
T KOG0953|consen 261 QHVSCTVEMVSV----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA-------------------------A 305 (700)
T ss_pred cceEEEEEEeec----------CCceEEEEehhHHhhcCcccchHHHHHHHhhh-------------------------h
Confidence 788899887421 12468999999999999999988876554331 1
Q ss_pred CCceEEEEeccCCCHHHHHHHhhccccccc-cccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 698 HGLQIVGMSATMPNVAAVADWLQAALYETN-FRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 698 ~~iqII~mSATL~N~~~la~wL~a~l~~~~-~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
..+.+.|==|-++=++++.+-.|..+-... .|-.||.. .+.+..-+.. +
T Consensus 306 dEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v-----------------------------~~~~~~sl~n-l 355 (700)
T KOG0953|consen 306 DEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVV-----------------------------EETALGSLSN-L 355 (700)
T ss_pred hhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCccee-----------------------------hhhhhhhhcc-C
Confidence 234555544444334444444433221100 11111100 0011111111 1
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
. .+.|+| |-||+..-.+...|.+... ..++.+||+|+++
T Consensus 356 k-~GDCvV-~FSkk~I~~~k~kIE~~g~---------------------------------------~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 356 K-PGDCVV-AFSKKDIFTVKKKIEKAGN---------------------------------------HKCAVIYGSLPPE 394 (700)
T ss_pred C-CCCeEE-EeehhhHHHHHHHHHHhcC---------------------------------------cceEEEecCCCCc
Confidence 2 345655 5677877777766654321 1288899999999
Q ss_pred HHHHHHHHhhc--CCceEEEecccccccCCCCCceEEeecCC----CCCcccCcccccccccccCCCCCC-CceEEEEEe
Q 000107 857 EREVVETCYRK--GLVRVLTATSTLAAGVNLPARRVIFRQPR----IGRDFIDGTRYRQMAGRAGRTGID-TKGESMLIC 929 (2191)
Q Consensus 857 eR~~Ve~~Fr~--G~ikVLVATstLa~GVNLPav~VVI~~p~----~g~~~is~~~y~QmiGRAGR~G~d-~~Ge~ill~ 929 (2191)
.|..--..|.+ +..+|||||+...+|+|+.-+|||+.+-. .....++..+.+|.+|||||.|-. ..|++..+.
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 99999999987 89999999999999999999999986432 223467888999999999998732 467766664
Q ss_pred ChhhHHHHHhhhccCCCCc
Q 000107 930 KPEEVKKIMGLLNESCPPL 948 (2191)
Q Consensus 930 ~~~e~~~~~~ll~~~l~~l 948 (2191)
.+++..+.+.|+.+.+|+
T Consensus 475 -~eDL~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 475 -SEDLKLLKRILKRPVEPI 492 (700)
T ss_pred -HhhHHHHHHHHhCCchHH
Confidence 456777788888776654
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=177.78 Aligned_cols=354 Identities=16% Similarity=0.078 Sum_probs=233.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHH
Q 000107 512 EICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 512 ~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+.+.|..+--+..+.+|.++|.. +.+|+++++.-.|.+||++++.++....... .....+|+.|++++++...+.+
T Consensus 274 ~~~~~~~~~~~E~~~~~~~~~~~~--~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 274 SIRSLLNKNTGESGIAISLELLKF--ASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHHHHHhcccccchhhhhHHHHhh--hhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCce
Confidence 344566666667889999999987 7899999999999999999999887765543 4557899999999988754322
Q ss_pred HHHhhc---cC-CeEEEEeccCCCC---CCCCCCceEEEchHHHHHHH--HHhhhcCCCCccceEEEcccccccccchhH
Q 000107 591 EVLLEP---LG-RHVRSYYGNQGGG---SLPKDTSVAVCTIEKANSLV--NRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 591 ~~l~~~---lg-~~V~~~~G~~~~~---~l~~~~~IiV~TpEkl~~Ll--~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
.-.+.. .. --|..+-|..... ....+.+++++.|..+..-+ +++--...+-+..++++||+|..... +|.
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 111110 11 1122222222111 13346789999998865432 21111123456789999999997754 676
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHH-HHHhh---ccccccccccccceEEE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAV-ADWLQ---AALYETNFRPVPLEEYI 737 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~l-a~wL~---a~l~~~~~RpvpL~e~i 737 (2191)
.....+.+|..+... ++ .+.++|++-.|||+.+.-.+ .+..+ ..++..+.-|..-+.++
T Consensus 431 ~~~~~~R~L~~L~~~-------F~----------~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V 493 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKG-------FE----------ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFV 493 (1034)
T ss_pred HHHHHHHHHHHHHHH-------HH----------hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEE
Confidence 666666666544321 00 13578999999999864333 33333 23455566666555554
Q ss_pred EeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchh
Q 000107 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817 (2191)
Q Consensus 738 ~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~ 817 (2191)
.............. .........++.+.+..+-.+|.||++|+-||.+.....+.+...+.
T Consensus 494 ~WNP~~~P~~~~~~----------~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--------- 554 (1034)
T KOG4150|consen 494 LWNPSAPPTSKSEK----------SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAP--------- 554 (1034)
T ss_pred EeCCCCCCcchhhh----------hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---------
Confidence 43333222111100 01111234566677778899999999999999888777665532211
Q ss_pred hhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 818 ~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
.++.+ |..+.||-..++|+.||...-.|++.-+|||+.|+-||||....-|+..+++
T Consensus 555 ----~LV~~-------------------i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP 611 (1034)
T KOG4150|consen 555 ----HLVEA-------------------ITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP 611 (1034)
T ss_pred ----HHHHH-------------------HHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc
Confidence 11111 3347899999999999999999999999999999999999999999987776
Q ss_pred CCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 898 g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
+ |.+.+.|..|||||...+.....+....+
T Consensus 612 ~----S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 612 G----SIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred h----hHHHHHHHhccccccCCCceEEEEEeccc
Confidence 6 99999999999999984444333333334
|
|
| >cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=159.55 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=124.4
Q ss_pred CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHH
Q 000107 1509 HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKR 1588 (2191)
Q Consensus 1509 ~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (2191)
...++++++.+.. ...-.+.|++++.++ .+||+++.+.. ..+..
T Consensus 4 ~~~~~~~~~~~~~----~~~~~l~~i~l~~~~-~~~~i~~~~~~-------------------------------~~~~~ 47 (178)
T cd06140 4 DEVALYVELLGEN----YHTADIIGLALANGG-GAYYIPLELAL-------------------------------LDLAA 47 (178)
T ss_pred CceEEEEEEcCCC----cceeeEEEEEEEeCC-cEEEEeccchH-------------------------------HHHHH
Confidence 4567888876431 222368999999765 68898854210 02345
Q ss_pred HHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCC
Q 000107 1589 IGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDER 1668 (2191)
Q Consensus 1589 L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~ 1668 (2191)
++++|+++++.|++||+|++++.|.++|+.+++. .||||||+|||+|+..+
T Consensus 48 l~~~l~~~~~~ki~~d~K~~~~~l~~~gi~~~~~-----------------------------~fDt~laaYLL~p~~~~ 98 (178)
T cd06140 48 LKEWLEDEKIPKVGHDAKRAYVALKRHGIELAGV-----------------------------AFDTMLAAYLLDPTRSS 98 (178)
T ss_pred HHHHHhCCCCceeccchhHHHHHHHHCCCcCCCc-----------------------------chhHHHHHHHcCCCCCC
Confidence 7889999999999999999999999988876642 59999999999998655
Q ss_pred CCchhHHHHHHHhhChHH---HHHhhccCc-hhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000107 1669 SSNPNLEKEVKKRLSSEA---AAAANRSGR-WKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVN 1744 (2191)
Q Consensus 1669 ~~l~~L~~~~~~~l~~e~---~~~~~~~g~-~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~~L~~l~~~iEmpl~~ 1744 (2191)
++ +..++.++++.+. ....++ |+ +..........|++.++.++++|+..|+++|+++++.++|.+||||+++
T Consensus 99 ~~---l~~l~~~yl~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~a~~l~~l~~~l~~~L~~~~l~~L~~~iE~PL~~ 174 (178)
T cd06140 99 YD---LADLAKRYLGRELPSDEEVYGK-GAKFAVPDEEVLAEHLARKAAAIARLAPKLEEELEENEQLELYYEVELPLAE 174 (178)
T ss_pred CC---HHHHHHHHcCCCCcchHHhcCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHH
Confidence 65 5555666665442 112211 11 1111123356699999999999999999999999999999999999999
Q ss_pred HHH
Q 000107 1745 VLA 1747 (2191)
Q Consensus 1745 vLa 1747 (2191)
||+
T Consensus 175 VL~ 177 (178)
T cd06140 175 VLA 177 (178)
T ss_pred Hhc
Confidence 996
|
Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=176.56 Aligned_cols=319 Identities=13% Similarity=0.140 Sum_probs=188.5
Q ss_pred CCCCHHHHHhhhh--cccccC-CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 523 SKLYPWQVECLHV--DGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 523 ~~l~p~Q~eal~~--~~il~g-knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
..++.+|..||.. .++.+| +.+++++.||+|||.+|.. |+.++++. -+++|+++-+++|+.|.+..+..++..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~- 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF- 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-
Confidence 3678899999874 123333 5699999999999999854 45555543 469999999999999999888776543
Q ss_pred CCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHh-hhc--CCCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRM-LEE--GRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l-~~~--~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
+-.+....+.. ....++|.|+|+..+...+..- -.. .....+++|||||+|.= .-.....++.-+--
T Consensus 242 ~~~~n~i~~~~----~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA-- 311 (875)
T COG4096 242 GTKMNKIEDKK----GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDA-- 311 (875)
T ss_pred ccceeeeeccc----CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHHH--
Confidence 43443333322 2236799999999987776542 111 22455899999999972 22334455555522
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHH--HHHh-hcccc------------ccccccccceEEEEe
Q 000107 675 GEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAV--ADWL-QAALY------------ETNFRPVPLEEYIKV 739 (2191)
Q Consensus 675 ~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~l--a~wL-~a~l~------------~~~~RpvpL~e~i~~ 739 (2191)
-+++++||+.+..+. ..++ |...+ -..++++.+...+..
T Consensus 312 --------------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~ 365 (875)
T COG4096 312 --------------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDL 365 (875)
T ss_pred --------------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccc
Confidence 235569997542222 2333 32211 112333333333322
Q ss_pred ccccccchhhHHHHHHHhh---------------ccCCCChhHHHHHHHHHHhc------CCcEEEEeCchhHHHHHHHH
Q 000107 740 GNAIYSKKMDVVRTILTAA---------------NLGGKDPDHIVELCDEVVQE------GHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 740 ~~~~~~~~~~~~r~l~~~~---------------~~~~~d~d~l~~Ll~e~~~~------g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
++..+....+.....-+.. .......+.+...+.+.+.. -+++||||.+...|+.+...
T Consensus 366 ~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~ 445 (875)
T COG4096 366 DGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREA 445 (875)
T ss_pred cCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHH
Confidence 2222221110000000000 00012234555556666555 26899999999999999988
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhh-cCCceEEEecc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR-KGLVRVLTATS 877 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr-~G~ikVLVATs 877 (2191)
+.+..+..+... +..+.+.- ...+..|-..+. +.--+|.|+.+
T Consensus 446 ~~~~ype~~~~~-----------------------------------a~~IT~d~-~~~q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 446 LVNEYPEYNGRY-----------------------------------AMKITGDA-EQAQALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHhCccccCce-----------------------------------EEEEeccc-hhhHHHHHHHHhcCCCCceEEehh
Confidence 877554321110 22233322 233344444444 34458999999
Q ss_pred cccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 878 TLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 878 tLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
++.+|||+|.+..++ +-...-|...|.||+||+-|.-.
T Consensus 490 lL~TGiDvpev~nlV----F~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 490 LLTTGVDVPEVVNLV----FDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred hhhcCCCchheeeee----ehhhhhhHHHHHHHhcCccccCc
Confidence 999999999977654 22223388899999999999753
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=182.79 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=80.9
Q ss_pred CCHHHHHhhhh--ccccc------CCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 525 LYPWQVECLHV--DGVLQ------RRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 525 l~p~Q~eal~~--~~il~------gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
+.+.|.+|+.. ..+.. .+..++..|||||||+++...+...+. ....++|+|+|+.+|..|..+.|..+..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 56689888864 11222 368999999999999998665543322 2456899999999999999999887643
Q ss_pred ccCCeEEEEeccCCC--CCC-CCCCceEEEchHHHHHHHHHhhhcCCCCcc-ceEEEccccccc
Q 000107 596 PLGRHVRSYYGNQGG--GSL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEI-GIIVIDELHMVA 655 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~--~~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l-~lVVIDEaH~l~ 655 (2191)
.. +. ..++... +.+ ..+..|+|+|+.++...+...........- .+||+||+|+..
T Consensus 319 ~~---~~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 319 DC---AE-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred CC---Cc-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 10 10 0011000 011 224689999999987654433222211111 289999999854
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=153.30 Aligned_cols=163 Identities=31% Similarity=0.423 Sum_probs=121.8
Q ss_pred HcCCCCCCHHHHHhhhhcccccC-CeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 519 KRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~g-knlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
..++..++++|.+++.. +... +++++++|||+|||.++..++++.+... ..+++|++|+++++.|....+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~--~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 3 KFGFEPLRPYQKEAIEA--LLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred ccCCCCCCHHHHHHHHH--HHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 35678999999999986 7777 9999999999999999999888877653 468999999999999999999887755
Q ss_pred cC-CeEEEEeccCCCC---CCCCC-CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 597 LG-RHVRSYYGNQGGG---SLPKD-TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 597 lg-~~V~~~~G~~~~~---~l~~~-~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
.. ..+..+.+..... ....+ .+|+++|++.+...+... ......++++||||+|++....+...+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~- 157 (201)
T smart00487 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND--LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL- 157 (201)
T ss_pred CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC--CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-
Confidence 43 2333333322110 02223 399999999988877652 2456778999999999998644555565555443
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 672 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
....++++||||+++
T Consensus 158 -------------------------~~~~~~v~~saT~~~ 172 (201)
T smart00487 158 -------------------------PKNVQLLLLSATPPE 172 (201)
T ss_pred -------------------------CccceEEEEecCCch
Confidence 246789999999874
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-12 Score=162.18 Aligned_cols=306 Identities=19% Similarity=0.222 Sum_probs=180.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
+.+.+.|++..-.+|+..|+--... ++.|++.-+.||||.|||+-..+..+ .+...|++++||+||..|+.|.++.+
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR--~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~kgkr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKR--LVRGKSFAIIAPTGVGKTTFGLLMSL-YLAKKGKRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHH--HHcCCceEEEcCCCCchhHHHHHHHH-HHHhcCCeEEEEecCHHHHHHHHHHH
Confidence 4566677664333888888865554 88999999999999999987655443 34457899999999999999999999
Q ss_pred HHHhhccC-CeEEE-EeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchh
Q 000107 591 EVLLEPLG-RHVRS-YYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660 (2191)
Q Consensus 591 ~~l~~~lg-~~V~~-~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG 660 (2191)
+++....| ..+.. +++...... ...+.||+|+|..-+..-...+. --++++|+||.+|-+.-.+
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~~kFdfifVDDVDA~Lkas-- 219 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----KLKFDFIFVDDVDAILKAS-- 219 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----ccCCCEEEEccHHHHHhcc--
Confidence 99987665 44444 555432211 23479999999865433333221 1368999999999887533
Q ss_pred HHHHHHHHHH----------------HHhhcCCCCCCCCCCCCCC-----CCCCCCCCCCceEEEEeccCCC----HHHH
Q 000107 661 YLLELLLTKL----------------RYAAGEGTSDSSSGENSGT-----SSGKADPAHGLQIVGMSATMPN----VAAV 715 (2191)
Q Consensus 661 ~~lE~lL~kL----------------r~~~~~~~~~s~~~~~~~~-----~~~~~~~~~~iqII~mSATL~N----~~~l 715 (2191)
.+++.+|..+ +....+ +........- ..-.......-++|.+|||... ...+
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~---~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYG---EKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 2222222211 111000 0000000000 0000011245689999999752 2334
Q ss_pred HHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHH
Q 000107 716 ADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCEST 795 (2191)
Q Consensus 716 a~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~l 795 (2191)
.+.||- .......-+...+. .... ......+.+++..+ |...|||++.... ...
T Consensus 297 ReLlgF---evG~~~~~LRNIvD------------------~y~~-~~~~e~~~elvk~l---G~GgLIfV~~d~G-~e~ 350 (1187)
T COG1110 297 RELLGF---EVGSGGEGLRNIVD------------------IYVE-SESLEKVVELVKKL---GDGGLIFVPIDYG-REK 350 (1187)
T ss_pred HHHhCC---ccCccchhhhheee------------------eecc-CccHHHHHHHHHHh---CCCeEEEEEcHHh-HHH
Confidence 444431 11111112221111 1110 12234455555543 6679999999442 223
Q ss_pred HHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe
Q 000107 796 ARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875 (2191)
Q Consensus 796 A~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA 875 (2191)
|+.|.+++...+++ +...|++ +...++.|..|.++|||.
T Consensus 351 aeel~e~Lr~~Gi~------------------------------------a~~~~a~-----~~~~le~F~~GeidvLVG 389 (1187)
T COG1110 351 AEELAEYLRSHGIN------------------------------------AELIHAE-----KEEALEDFEEGEVDVLVG 389 (1187)
T ss_pred HHHHHHHHHhcCce------------------------------------EEEeecc-----chhhhhhhccCceeEEEE
Confidence 44444444443332 5556763 367789999999999997
Q ss_pred cc----cccccCCCCC-ceEEeecC
Q 000107 876 TS----TLAAGVNLPA-RRVIFRQP 895 (2191)
Q Consensus 876 Ts----tLa~GVNLPa-v~VVI~~p 895 (2191)
.. ++-+|+|+|. ++++|-++
T Consensus 390 vAsyYG~lVRGlDLP~rirYaIF~G 414 (1187)
T COG1110 390 VASYYGVLVRGLDLPHRIRYAVFYG 414 (1187)
T ss_pred ecccccceeecCCchhheeEEEEec
Confidence 64 7899999998 56666443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=172.67 Aligned_cols=120 Identities=27% Similarity=0.304 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+...+.+....+.++||||+|+..++.++..|... ++ +
T Consensus 585 ~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~----gI----------------------------------~-- 624 (1025)
T PRK12900 585 NAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK----RI----------------------------------A-- 624 (1025)
T ss_pred HHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc----CC----------------------------------C--
Confidence 3455566555667899999999999999888877542 11 1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC---Cce-----EEeecCCCCCcccCcccccccccccCCC
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP---ARR-----VIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLP---av~-----VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
+..+|+ .+.+|+..+.+|+.+...|+|||++++||+||+ .+. +||.++++. +...|.|++|||||.
T Consensus 625 h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhe----s~Rid~Ql~GRtGRq 698 (1025)
T PRK12900 625 HNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHE----SRRIDRQLRGRAGRQ 698 (1025)
T ss_pred ceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCc----hHHHHHHHhhhhhcC
Confidence 345776 578999999999999999999999999999999 443 457666654 667799999999999
Q ss_pred CCCCceEEEEEeChhh
Q 000107 918 GIDTKGESMLICKPEE 933 (2191)
Q Consensus 918 G~d~~Ge~ill~~~~e 933 (2191)
| .+|.++.|++.++
T Consensus 699 G--dpGsS~ffvSleD 712 (1025)
T PRK12900 699 G--DPGESVFYVSLED 712 (1025)
T ss_pred C--CCcceEEEechhH
Confidence 9 8999999998754
|
|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=149.31 Aligned_cols=182 Identities=21% Similarity=0.315 Sum_probs=126.6
Q ss_pred hCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHH
Q 000107 1507 ATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRW 1586 (2191)
Q Consensus 1507 ~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1586 (2191)
+.+.++||+++.+. ......+.|+++|+.+++.+|+++.+.... + . ++ ....+
T Consensus 4 ~~~~~a~d~e~~~~----~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~-~--------------~~-------~~~~~ 56 (193)
T cd06139 4 KAKVFAFDTETTSL----DPMQAELVGISFAVEPGEAYYIPLGHDYGG-E-Q--------------LP-------REEVL 56 (193)
T ss_pred cCCeEEEEeecCCC----CcCCCeEEEEEEEcCCCCEEEEecCCCccc-c-C--------------CC-------HHHHH
Confidence 35668899876432 111236899999988777899987532100 0 0 00 12355
Q ss_pred HHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCC
Q 000107 1587 KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDD 1666 (2191)
Q Consensus 1587 ~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~ 1666 (2191)
..++++|++..+.+++||+|||+++|+++|+.+.+ .++||++++|+++|+.
T Consensus 57 ~~l~~~l~~~~~~~v~hn~k~d~~~l~~~gi~~~~-----------------------------~~~Dt~l~a~ll~p~~ 107 (193)
T cd06139 57 AALKPLLEDPSIKKVGQNLKFDLHVLANHGIELRG-----------------------------PAFDTMLASYLLNPGR 107 (193)
T ss_pred HHHHHHHhCCCCcEEeeccHHHHHHHHHCCCCCCC-----------------------------CcccHHHHHHHhCCCC
Confidence 67888999887899999999999999988876543 2589999999999976
Q ss_pred CCCCchhHHHHHHHhhChH---HHHHhhcc---CchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 000107 1667 ERSSNPNLEKEVKKRLSSE---AAAAANRS---GRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS-EELIEALLNIE 1739 (2191)
Q Consensus 1667 ~~~~l~~L~~~~~~~l~~e---~~~~~~~~---g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~-~~L~~l~~~iE 1739 (2191)
..++ |..++.++++.+ .....++. ..|..........|++.|+..+++|+..|.++|.+ .++.++|.++|
T Consensus 108 ~~~~---l~~l~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ya~~d~~~~~~l~~~l~~~l~~~~~~~~l~~~iE 184 (193)
T cd06139 108 RRHG---LDDLAERYLGHKTISFEDLVGKGKKQITFDQVPLEKAAEYAAEDADITLRLYELLKPKLKEEPGLLELYEEIE 184 (193)
T ss_pred CCCC---HHHHHHHHhCCCCccHHHHcCCCcCcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 3454 555555555432 11122211 01111001235669999999999999999999998 89999999999
Q ss_pred hhHHHHHH
Q 000107 1740 IPLVNVLA 1747 (2191)
Q Consensus 1740 mpl~~vLa 1747 (2191)
||+++||+
T Consensus 185 ~Pl~~vL~ 192 (193)
T cd06139 185 MPLIPVLA 192 (193)
T ss_pred ccHHHHhc
Confidence 99999996
|
Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair. |
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=159.82 Aligned_cols=309 Identities=16% Similarity=0.220 Sum_probs=197.6
Q ss_pred CCCCHHHHHhhhhccccc-C--CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQ-R--RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~-g--knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
+.++|+|..++.. ++. | ++-||..|.|+|||++..-++.. -++.+|+++..-.-+.|+...|..+..--.-
T Consensus 301 t~iRpYQEksL~K--MFGNgRARSGiIVLPCGAGKtLVGvTAa~t----ikK~clvLcts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 301 TQIRPYQEKSLSK--MFGNGRARSGIIVLPCGAGKTLVGVTAACT----IKKSCLVLCTSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cccCchHHHHHHH--HhCCCcccCceEEEecCCCCceeeeeeeee----ecccEEEEecCccCHHHHHHHHHhhcccCcc
Confidence 5789999999986 443 3 78899999999999998655432 3678999988877777777777654332234
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHH------HhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHh
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVN------RMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYA 673 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~------~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~ 673 (2191)
.+..++.+..+ ..+.++.|+|+|+.++..--+ +.+....-++.+++|+||+|.+-.. ....+++.+..-
T Consensus 375 ~i~rFTsd~Ke-~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MFRRVlsiv~aH 449 (776)
T KOG1123|consen 375 QICRFTSDAKE-RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MFRRVLSIVQAH 449 (776)
T ss_pred ceEEeeccccc-cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HHHHHHHHHHHH
Confidence 56666665543 356678999999876422111 1111122356899999999997543 334444444322
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC----HHHHHHHhhccccccccccccceEEEEe--ccccccch
Q 000107 674 AGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN----VAAVADWLQAALYETNFRPVPLEEYIKV--GNAIYSKK 747 (2191)
Q Consensus 674 ~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N----~~~la~wL~a~l~~~~~RpvpL~e~i~~--~~~~~~~~ 747 (2191)
+ -+|++|||-. +.++.-.+|.++|..+|-...-.-+|-. --.++...
T Consensus 450 c---------------------------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpM 502 (776)
T KOG1123|consen 450 C---------------------------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPM 502 (776)
T ss_pred h---------------------------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCC
Confidence 1 3899999742 4455556677777777765443333320 00112211
Q ss_pred -hhHHHHHHH--------hhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhh
Q 000107 748 -MDVVRTILT--------AANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818 (2191)
Q Consensus 748 -~~~~r~l~~--------~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~ 818 (2191)
.++.+.... ..-+...+.....-|+...-+.|.++|||..+.-.....|..|
T Consensus 503 t~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl------------------- 563 (776)
T KOG1123|consen 503 TPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL------------------- 563 (776)
T ss_pred CHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc-------------------
Confidence 111111110 0111223333334455555567889999988765444433332
Q ss_pred hhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCC-
Q 000107 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPR- 896 (2191)
Q Consensus 819 ~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~- 896 (2191)
|=-|++|..++.||..|++.|+- ..++.|+-+-+.-.++|||...|+|.-..
T Consensus 564 --------------------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH 617 (776)
T KOG1123|consen 564 --------------------------GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 617 (776)
T ss_pred --------------------------CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccc
Confidence 23468999999999999999984 57888999999999999999999986332
Q ss_pred CCCcccCcccccccccccCCCC
Q 000107 897 IGRDFIDGTRYRQMAGRAGRTG 918 (2191)
Q Consensus 897 ~g~~~is~~~y~QmiGRAGR~G 918 (2191)
.| |..+-.||.||.-|+.
T Consensus 618 ~G----SRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 618 GG----SRRQEAQRLGRILRAK 635 (776)
T ss_pred cc----chHHHHHHHHHHHHHh
Confidence 23 6667789999988874
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=159.39 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=97.6
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ .+|+.|.-..-. +++|+ |.-..||.|||+++.++++...+ .|+.+-+++|+-.||.+-++++..++..+|+
T Consensus 75 lg~-r~ydvQlig~l~--Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-~G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALR--LLAGD--VIEMATGEGKTLAGAIAAAGYAL-QGRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHH--HhCCC--cccccCCCCHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 565 788888876644 56664 66999999999999999887665 5888999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHH-Hhh---hcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVN-RML---EEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~-~l~---~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+|+...++..... ..-.+||+++|...+ .+.++ ++. .......+.+.||||+|-+.
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9998877643211 112479999998764 22232 221 12234568899999999764
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=169.08 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.+...+......+.++||||+|++.++.++..|.+. + ..
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----g------------------------------------i~ 468 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----G------------------------------------IK 468 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----c------------------------------------cc
Confidence 3455555666677899999999999999988887542 1 12
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC--CCCCcccCcccccccccccCCCCCCCce
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP--RIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p--~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
+.++|++++..+|..++..|+.|.+.|||||+.+++|+|+|.+.+||.+. ..| -+-+..+|+||+|||||.. .|
T Consensus 469 ~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG-~p~~~~~~iqriGRagR~~---~G 544 (655)
T TIGR00631 469 VRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNV---NG 544 (655)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccccc-CCCCHHHHHHHhcCCCCCC---CC
Confidence 78899999999999999999999999999999999999999999776543 222 1226679999999999985 79
Q ss_pred EEEEEeChhh
Q 000107 924 ESMLICKPEE 933 (2191)
Q Consensus 924 e~ill~~~~e 933 (2191)
.++++++..+
T Consensus 545 ~vi~~~~~~~ 554 (655)
T TIGR00631 545 KVIMYADKIT 554 (655)
T ss_pred EEEEEEcCCC
Confidence 9999988643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-11 Score=145.47 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.++.-+...+..+..+||-+-|++.+|.+...|.+. + -.
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~----g------------------------------------ik 472 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL----G------------------------------------IK 472 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc----C------------------------------------ce
Confidence 4455556666777899999999999988887777542 1 22
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE--eecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI--FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV--I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
|.|+|+++..-||..|+..+|.|.+.|||.-+.|-.|+|+|.+..| .+.+..|- .-|-.+.+|-+|||.|.- .|
T Consensus 473 v~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF-LRse~SLIQtIGRAARN~---~G 548 (663)
T COG0556 473 VRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF-LRSERSLIQTIGRAARNV---NG 548 (663)
T ss_pred EEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcccc-ccccchHHHHHHHHhhcc---CC
Confidence 9999999999999999999999999999999999999999999876 44444331 125568999999999986 89
Q ss_pred EEEEEeCh
Q 000107 924 ESMLICKP 931 (2191)
Q Consensus 924 e~ill~~~ 931 (2191)
.+|++++.
T Consensus 549 kvIlYAD~ 556 (663)
T COG0556 549 KVILYADK 556 (663)
T ss_pred eEEEEchh
Confidence 99998765
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=157.97 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=63.4
Q ss_pred cCCCCCCHHHHH---hhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH-HHHHHHhh
Q 000107 520 RGISKLYPWQVE---CLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA-EHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~e---al~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~-~~l~~l~~ 595 (2191)
.|| +.++-|.+ ++. .++.+++.+++.|+||+|||++|++|++... .+.++||.+||++|+.|.. +.+..+..
T Consensus 242 ~~~-e~R~~Q~~ma~~V~-~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 242 LGL-EERPKQESFAKLVG-EDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--DQRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred CCC-ccCHHHHHHHHHHH-HHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 455 68888988 443 2356789999999999999999999988753 5789999999999999995 56666555
Q ss_pred ccCCeEEEEe
Q 000107 596 PLGRHVRSYY 605 (2191)
Q Consensus 596 ~lg~~V~~~~ 605 (2191)
.+++++..+.
T Consensus 318 ~~~~~~~~~k 327 (820)
T PRK07246 318 VFHIDCHSLK 327 (820)
T ss_pred hcCCcEEEEE
Confidence 5666555444
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=161.26 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=95.9
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. .+|+.|.-.- +.-.+--|.-..||.|||+++.++++-..+ .|+.+-+++|+..||.+-++++..++..+|+
T Consensus 79 lGm-~~ydVQliGg----~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 79 MGM-RHFDVQLIGG----MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred hCC-CcchhHHHhh----hHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 564 6788886442 322445577999999999999999987665 5888999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHH-Hh---hhcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVN-RM---LEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~-~l---~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+|+.+.++..... ..-.++|+++|..-+ .+.++ ++ ........++++||||+|.+.
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9998877653211 111379999998764 12222 11 112234779999999999764
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=130.12 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=88.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCC
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKD 616 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~ 616 (2191)
+++++.+|||+|||+++..++.+.... ..++++|++|++.++.+..+.+...... +..+..+.+...... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCC
Confidence 478999999999999999888876654 5679999999999999999988887654 566666666543321 2456
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
.+|+++|++.+...... .......+++|||||+|.+....
T Consensus 80 ~~i~i~t~~~~~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~ 119 (144)
T cd00046 80 TDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQG 119 (144)
T ss_pred CCEEEECcHHHHHHHHc--CCcchhcCCEEEEeCHHHHhhcc
Confidence 89999999987665543 22345678999999999987653
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=135.19 Aligned_cols=171 Identities=14% Similarity=0.181 Sum_probs=123.7
Q ss_pred eeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCC
Q 000107 1490 NAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSD 1569 (2191)
Q Consensus 1490 ~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~ 1569 (2191)
.++++...+..+++.+...+.++||+|+.+... . .....+.++++|+. ..+|+........
T Consensus 2 ~~v~~~~~l~~~~~~l~~~~~~a~D~E~~~~~~-~-~~~~~~~~iq~~~~--~~~~i~~~~~~~~--------------- 62 (176)
T PF01612_consen 2 QIVDTEEELEEAIKKLKNAKVLAFDTETTGLDP-Y-SYNPKIALIQLATG--EGCYIIDPIDLGD--------------- 62 (176)
T ss_dssp EEEHSHHHHHHHHHHHTTTSEEEEEEEEETSTS-T-TSSEEEEEEEEEES--CEEEEECGTTSTT---------------
T ss_pred EecCCHHHHHHHHHHHcCCCeEEEEEEECCCCc-c-ccCCeEEEEEEecC--CCceeeeeccccc---------------
Confidence 467788999999999999999999999875421 0 11234666677655 5666655432100
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccCC
Q 000107 1570 KNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVH 1648 (2191)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1648 (2191)
...+..|+++|+++.+.|++||+|+|+.+|++ +|+.+.+
T Consensus 63 -------------~~~~~~l~~ll~~~~i~kv~~n~~~D~~~L~~~~~i~~~~--------------------------- 102 (176)
T PF01612_consen 63 -------------NWILDALKELLEDPNIIKVGHNAKFDLKWLYRSFGIDLKN--------------------------- 102 (176)
T ss_dssp -------------TTHHHHHHHHHTTTTSEEEESSHHHHHHHHHHHHTS--SS---------------------------
T ss_pred -------------cchHHHHHHHHhCCCccEEEEEEechHHHHHHHhccccCC---------------------------
Confidence 00356789999999999999999999999988 6776654
Q ss_pred CCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhC-hHHHHHhhccCchh--hhhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000107 1649 LKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLS-SEAAAAANRSGRWK--NQMRRAAHNGCCRRVAQTRALCSVLWKL 1725 (2191)
Q Consensus 1649 ~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~-~e~~~~~~~~g~~~--~~~~~~~~~ya~~Da~~t~~L~~~L~~~ 1725 (2191)
++|||+|+|+++|... ++ |..++.++++ .... .....++|. ..+.+.+..||+.|+..+++||..|+++
T Consensus 103 ---~~D~~l~~~~l~~~~~-~~---L~~L~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~YAa~D~~~~~~l~~~l~~~ 174 (176)
T PF01612_consen 103 ---VFDTMLAAYLLDPTRS-YS---LKDLAEEYLGNIDLD-KKEQMSDWRKARPLSEEQIEYAAQDAVVTFRLYEKLKPQ 174 (176)
T ss_dssp ---EEEHHHHHHHTTTSTT-SS---HHHHHHHHHSEEE-G-HCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ---ccchhhhhhccccccc-cc---HHHHHHHHhhhccCc-HHHhhccCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999754 54 6666777777 3332 233456666 4566667899999999999999999988
Q ss_pred HH
Q 000107 1726 LV 1727 (2191)
Q Consensus 1726 L~ 1727 (2191)
|+
T Consensus 175 l~ 176 (176)
T PF01612_consen 175 LE 176 (176)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A .... |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=130.50 Aligned_cols=116 Identities=37% Similarity=0.521 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 767 HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 767 ~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
.+..++......++++||||+++..++.++..|.+ ...++
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~----------------------------------------~~~~~ 55 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK----------------------------------------PGIKV 55 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh----------------------------------------cCCcE
Confidence 34444544444578999999999999888877743 12348
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEE
Q 000107 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
.++|++++..+|..+.+.|++|..+||++|+.+++|+|+|...+||.... +.+...|.||+||+||.| ..|.++
T Consensus 56 ~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~----~~~~~~~~Q~~GR~~R~~--~~~~~~ 129 (131)
T cd00079 56 AALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL----PWSPSSYLQRIGRAGRAG--QKGTAI 129 (131)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC----CCCHHHheecccccccCC--CCceEE
Confidence 89999999999999999999999999999999999999998876663333 347889999999999999 478877
Q ss_pred EE
Q 000107 927 LI 928 (2191)
Q Consensus 927 ll 928 (2191)
++
T Consensus 130 ~~ 131 (131)
T cd00079 130 LL 131 (131)
T ss_pred eC
Confidence 64
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=136.82 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=85.2
Q ss_pred CCCHHHHHhhhhcccc-------cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 524 KLYPWQVECLHVDGVL-------QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il-------~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
+|+++|.+++.. +. ..+++++.+|||||||.++...+.+.. . ++++++|+..|+.|....+..+...
T Consensus 3 ~lr~~Q~~ai~~--i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~---~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIAR--IINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R---KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHH--HHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C---EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHH--HHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c---ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999975 55 269999999999999999876555543 2 9999999999999999998655432
Q ss_pred cCCeEEE-Ee---------ccCCC------CCCCCCCceEEEchHHHHHHHHHhh---------hcCCCCccceEEEccc
Q 000107 597 LGRHVRS-YY---------GNQGG------GSLPKDTSVAVCTIEKANSLVNRML---------EEGRLSEIGIIVIDEL 651 (2191)
Q Consensus 597 lg~~V~~-~~---------G~~~~------~~l~~~~~IiV~TpEkl~~Ll~~l~---------~~~~L~~l~lVVIDEa 651 (2191)
. ..+.. .. ..... .....+.+++++|..++........ ........++||+||+
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 K-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp S-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred h-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 1 11110 00 00000 0012357899999999887765311 1123456799999999
Q ss_pred ccccc
Q 000107 652 HMVAD 656 (2191)
Q Consensus 652 H~l~d 656 (2191)
|++..
T Consensus 156 H~~~~ 160 (184)
T PF04851_consen 156 HHYPS 160 (184)
T ss_dssp GCTHH
T ss_pred hhcCC
Confidence 99764
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=143.81 Aligned_cols=130 Identities=17% Similarity=0.125 Sum_probs=92.6
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-.--. +..| -|.-..||=|||+++.+|+.-..+ .|+.|-+|...-.||..=++++..++..+|+
T Consensus 75 lG~-r~ydVQliGglv--Lh~G--~IAEMkTGEGKTLvAtLpayLnAL-~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGII--LDLG--SVAEMKTGEGKTITSIAPVYLNAL-TGKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHH--HhcC--CeeeecCCCCccHHHHHHHHHHHh-cCCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 566 788888765432 4444 368999999999999998865544 5777888888889999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHH-Hh---hhcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVN-RM---LEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~-~l---~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+....+..... ..-.+||.++|..-+ .+.++ ++ ........+.+.||||+|-+.
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9987665432211 112479999998764 22333 21 122234668899999999764
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-10 Score=146.30 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=55.6
Q ss_pred EEEEcCCCCHHHHHHHHHHh----------------------hc----CCceEEEecccccccCCCCCceEEeecCCCCC
Q 000107 846 VAYHHAGLTVEEREVVETCY----------------------RK----GLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~F----------------------r~----G~ikVLVATstLa~GVNLPav~VVI~~p~~g~ 899 (2191)
+..+|+..+...|..+|+.. ++ +...|+|+|++.+.|+|+...-+|..
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~------ 862 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD------ 862 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec------
Confidence 67789999888888888664 12 56799999999999999987666642
Q ss_pred cccCcccccccccccCCCCCCCceE
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGE 924 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge 924 (2191)
.-+..+.+|++||..|.|....+.
T Consensus 863 -~~~~~sliQ~aGR~~R~~~~~~~~ 886 (1110)
T TIGR02562 863 -PSSMRSIIQLAGRVNRHRLEKVQQ 886 (1110)
T ss_pred -cCcHHHHHHHhhcccccccCCCCC
Confidence 225678999999999988655443
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-09 Score=135.26 Aligned_cols=330 Identities=18% Similarity=0.179 Sum_probs=197.9
Q ss_pred CCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHH--HHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAE--ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvae--l~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|.++|.+-++.. ....|-|.|+.-.-|-|||+... +..|+....-.+.-||++|.-.|. ..+.+++++.. ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--Cc
Confidence 6899999988751 12358899999999999997653 344444444456789999986664 45667777655 57
Q ss_pred eEEEEeccCCCC-------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHH
Q 000107 600 HVRSYYGNQGGG-------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRY 672 (2191)
Q Consensus 600 ~V~~~~G~~~~~-------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~ 672 (2191)
.+..++|+.... ..+...+|+|+|+|.+..--+-+.. -...++||||+|.|-.. ...+-.++..+
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~----~~W~ylvIDEaHRiKN~--~s~L~~~lr~f-- 315 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKK----FNWRYLVIDEAHRIKNE--KSKLSKILREF-- 315 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhc----CCceEEEechhhhhcch--hhHHHHHHHHh--
Confidence 888999987432 1344689999999986432111111 23589999999999764 22232333333
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-C-CHH------------------HHHHHhhccc---------
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-P-NVA------------------AVADWLQAAL--------- 723 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~-N~~------------------~la~wL~a~l--------- 723 (2191)
. ....++++.|. . |+. ++.+|+....
T Consensus 316 -~------------------------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~ 370 (971)
T KOG0385|consen 316 -K------------------------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVS 370 (971)
T ss_pred -c------------------------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHH
Confidence 1 12346777773 2 333 3444544210
Q ss_pred -cccccccc--------------cceEE-EEecccccc---------------------chh---hHHHHHHHhhc----
Q 000107 724 -YETNFRPV--------------PLEEY-IKVGNAIYS---------------------KKM---DVVRTILTAAN---- 759 (2191)
Q Consensus 724 -~~~~~Rpv--------------pL~e~-i~~~~~~~~---------------------~~~---~~~r~l~~~~~---- 759 (2191)
.+...+|. |..+. +.++-.... .+. .++-.+.+..+
T Consensus 371 ~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYL 450 (971)
T KOG0385|consen 371 RLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYL 450 (971)
T ss_pred HHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccc
Confidence 01111111 11111 111111000 000 11111111100
Q ss_pred cC-----------------CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 760 LG-----------------GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 760 ~~-----------------~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
.. ..+.-.+-.|+..+...|++||||..-.+ +-..|..++.
T Consensus 451 F~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~------------------ 508 (971)
T KOG0385|consen 451 FDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCM------------------ 508 (971)
T ss_pred cCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHH------------------
Confidence 00 01112334566677778899999964322 2223333322
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcC---CceEEEecccccccCCCCCceEEeecCCCCC
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG---LVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G---~ikVLVATstLa~GVNLPav~VVI~~p~~g~ 899 (2191)
...|...-+-|.++.++|...++.|... ..-.|++|....-||||-+..+||-++.-
T Consensus 509 ------------------~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSD-- 568 (971)
T KOG0385|consen 509 ------------------LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSD-- 568 (971)
T ss_pred ------------------hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCC--
Confidence 1234466688999999999999999854 34578899999999999998877644332
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.++..=+|..-||-|-|+...-.+|.+++..-
T Consensus 569 --WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 569 --WNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred --CCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 25566679999999999888999999998754
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=148.45 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=56.3
Q ss_pred cCCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 520 RGISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
.|| +++|-|.+-... ..+.+++.+++-||||+|||++|++|++......++++||-++|++|-.|...
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 355 789999884332 23557899999999999999999999987766678999999999999999875
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-11 Score=117.41 Aligned_cols=73 Identities=32% Similarity=0.436 Sum_probs=66.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCC
Q 000107 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG 918 (2191)
Q Consensus 842 l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G 918 (2191)
....+..+||+++..+|..+++.|++|..+|||||+++++|||+|.+++||.+..+ .+...|.|++||+||.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~----~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPP----WSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSE----SSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccC----CCHHHHHHHhhcCCCCC
Confidence 45569999999999999999999999999999999999999999999999876553 48899999999999987
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-10 Score=148.28 Aligned_cols=325 Identities=15% Similarity=0.102 Sum_probs=170.6
Q ss_pred EcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCc
Q 000107 547 CASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTS 618 (2191)
Q Consensus 547 ~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~ 618 (2191)
.+.+|||||.+|.-++ ...+..|+.+|+++|..+|+.|...+|+..|. +..|..+++..+... .....+
T Consensus 166 ~~~~GSGKTevyl~~i-~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 166 QALPGEDWARRLAAAA-AATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred hcCCCCcHHHHHHHHH-HHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 3346999999996554 45566799999999999999999999998774 256777888765421 234578
Q ss_pred eEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-chh---HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000107 619 VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NRG---YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKA 694 (2191)
Q Consensus 619 IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~RG---~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~ 694 (2191)
|+|+|-.- -...+.++++|||||=|.-.-. .++ ..-+..+.+-+
T Consensus 243 IViGtRSA---------vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~----------------------- 290 (665)
T PRK14873 243 VVVGTRSA---------VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH----------------------- 290 (665)
T ss_pred EEEEccee---------EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-----------------------
Confidence 99999543 2236889999999999975422 122 22333333332
Q ss_pred CCCCCceEEEEeccCCCHHHHHHHhhcccc-----c-cccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHH
Q 000107 695 DPAHGLQIVGMSATMPNVAAVADWLQAALY-----E-TNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHI 768 (2191)
Q Consensus 695 ~~~~~iqII~mSATL~N~~~la~wL~a~l~-----~-~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l 768 (2191)
..++.+|+.|||. .++.+..-...... . ......|.-..+..... ... .........-...+
T Consensus 291 --~~~~~lvLgSaTP-Sles~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~------~~~---~~~~~~g~~ls~~l 358 (665)
T PRK14873 291 --QHGCALLIGGHAR-TAEAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGL------ALE---RDPAARAARLPSLA 358 (665)
T ss_pred --HcCCcEEEECCCC-CHHHHHHHhcCcceeeccccccccCCCCeEEEEeCchh------hhc---cccccccCccCHHH
Confidence 2467899999994 55544332221111 0 00111121111111000 000 00000001133456
Q ss_pred HHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHH---hhcc--cccCCCCchhh----hhHHH--------HHHhhcCC
Q 000107 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL---KKFS--INVHSSDSEFI----DITSA--------IDALRRCP 831 (2191)
Q Consensus 769 ~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l---~~~~--~~~~~~~~~~~----~~~~~--------~~~L~~~~ 831 (2191)
...+.+.++.| ++|||+|.+..+-.+...=+... +... ...+....... ..... -..++...
T Consensus 359 ~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g 437 (665)
T PRK14873 359 FRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVV 437 (665)
T ss_pred HHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeee
Confidence 77888888888 99999998875332221111100 0000 00000000000 00000 00000000
Q ss_pred CC---CChhhhhhcC-CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecc----cccccCCCCCceEEeecCC--CCCcc
Q 000107 832 AG---LDPVLEETLP-SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS----TLAAGVNLPARRVIFRQPR--IGRDF 901 (2191)
Q Consensus 832 ~g---ld~~L~~~l~-~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATs----tLa~GVNLPav~VVI~~p~--~g~~~ 901 (2191)
.| +.+.|...++ ..|... +++.+++.|. ++..|||+|. +++ | ++ ...+|++.+. ...++
T Consensus 438 ~Gter~eeeL~~~FP~~~V~r~-------d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDf 506 (665)
T PRK14873 438 VGARRTAEELGRAFPGVPVVTS-------GGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDL 506 (665)
T ss_pred ccHHHHHHHHHHHCCCCCEEEE-------ChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCc
Confidence 11 1223333333 123322 2345788897 5899999998 666 3 22 2233444321 11111
Q ss_pred c----CcccccccccccCCCCCCCceEEEEEeChh
Q 000107 902 I----DGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 902 i----s~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
- ....+.|-+|||||.. ..|++++...++
T Consensus 507 RA~Er~~qll~qvagragr~~--~~G~V~iq~~p~ 539 (665)
T PRK14873 507 RAAEDTLRRWMAAAALVRPRA--DGGQVVVVAESS 539 (665)
T ss_pred ChHHHHHHHHHHHHHhhcCCC--CCCEEEEEeCCC
Confidence 1 1224578999999987 689999886554
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=153.31 Aligned_cols=123 Identities=21% Similarity=0.279 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCC
Q 000107 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPS 844 (2191)
Q Consensus 765 ~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~ 844 (2191)
.+.+...+......+.++||||+|++.++.++..|... +.
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----------------------------------------gi 471 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----------------------------------------GI 471 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----------------------------------------ce
Confidence 34555556666677899999999999999988887541 12
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCcccCcccccccccccCCCCCCCc
Q 000107 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTRYRQMAGRAGRTGIDTK 922 (2191)
Q Consensus 845 GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~~is~~~y~QmiGRAGR~G~d~~ 922 (2191)
.+.++|+++++.+|..++..|+.|.+.|||||+.+++|+|+|.+.+||.+.. +| -+-+..+|+||+||+||.. .
T Consensus 472 ~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG-~~~~~~~yiqr~GR~gR~~---~ 547 (652)
T PRK05298 472 KVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNV---N 547 (652)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccc-cCCCHHHHHHHhccccCCC---C
Confidence 3788999999999999999999999999999999999999999998776432 22 1236778999999999964 8
Q ss_pred eEEEEEeCh
Q 000107 923 GESMLICKP 931 (2191)
Q Consensus 923 Ge~ill~~~ 931 (2191)
|.|+++++.
T Consensus 548 G~~i~~~~~ 556 (652)
T PRK05298 548 GKVILYADK 556 (652)
T ss_pred CEEEEEecC
Confidence 999999984
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-08 Score=118.01 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=92.8
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
+..|.|+|.+-+.. ++..|..+++.-.-|-|||+.| ++|..... .....|+|+|- ++-....+.+..++.... .|
T Consensus 196 vs~LlPFQreGv~f-aL~RgGR~llADeMGLGKTiQA-laIA~yyr-aEwplliVcPA-svrftWa~al~r~lps~~-pi 270 (689)
T KOG1000|consen 196 VSRLLPFQREGVIF-ALERGGRILLADEMGLGKTIQA-LAIARYYR-AEWPLLIVCPA-SVRFTWAKALNRFLPSIH-PI 270 (689)
T ss_pred HHhhCchhhhhHHH-HHhcCCeEEEecccccchHHHH-HHHHHHHh-hcCcEEEEecH-HHhHHHHHHHHHhccccc-ce
Confidence 34678999999975 5788999999999999999998 44544433 45568889995 344455666666665432 24
Q ss_pred EEEeccCCC-CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 602 RSYYGNQGG-GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 602 ~~~~G~~~~-~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
.++.+.... ..+.....|.|.+++.+..+-+.+.. .+.++||+||.|++-+. +......++..+
T Consensus 271 ~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~----~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dll 335 (689)
T KOG1000|consen 271 FVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKK----EKYRVVIFDESHMLKDS-KTKRTKAATDLL 335 (689)
T ss_pred EEEecccCCccccccCCeEEEEEHHHHHHHHHHHhc----ccceEEEEechhhhhcc-chhhhhhhhhHH
Confidence 444454432 23445568999999987665544322 34799999999999875 333344443333
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-08 Score=132.05 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=95.4
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-.- +.-.+--|.-+.||-|||+++.+|+.-..+ .|+.+-+|.+...||..=++++..++..+|+
T Consensus 82 lG~-r~ydVQliGg----l~Lh~G~IAEM~TGEGKTL~atlpaylnAL-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGM-RHFDVQLIGG----MVLHEGQIAEMKTGEGKTLVATLPSYLNAL-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCC-CcchhHHHhh----hhhcCCceeeecCCCChhHHHHHHHHHHhh-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 565 6788886543 323455678999999999999998876555 5888999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHH--HHHHHHhh---hcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKA--NSLVNRML---EEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl--~~Ll~~l~---~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+...++..... ..-.+||+++|...+ +.|-.++. .......+.+.||||+|.|.
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9998766443211 112589999999875 22322322 12245678999999999764
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-09 Score=137.56 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=94.5
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ ++|+.|.-.. +.-.+.-|.-+.||.|||+++.+|+.-..+ .|+.|-+|.++..||..-++++..++..+|+
T Consensus 73 lG~-r~ydvQlig~----l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGG----LVLNDGKIAEMKTGEGKTLVATLPAYLNAL-TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhh----HhhcCCccccccCCCCchHHHHHHHHHHHh-cCCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 576 5888887543 333566788999999999999998864444 5888999999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHHH-HHHH-Hhh---hcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKAN-SLVN-RML---EEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl~-~Ll~-~l~---~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+...++..... ..=.++|+++|..-+- +.++ ++. .......+.+.||||+|-+.
T Consensus 147 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9988766543211 1124789999986542 2333 221 11234568899999999664
|
|
| >KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=138.81 Aligned_cols=222 Identities=20% Similarity=0.265 Sum_probs=145.4
Q ss_pred CcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcC---C-----hH----HHHHhcCCCchHHHHHHHHHcCC
Q 000107 1911 NAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK---D-----PA----LIGLLSKPHGDVFTMIAARWTGR 1978 (2191)
Q Consensus 1911 ~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~---D-----~~----Li~af~~~g~Dih~~~Aa~~~g~ 1978 (2191)
++..+++...+|.+.+++ +||.||+||-...|+-|.|.|+. | .+ .++-..+.|.|.|+.+|..+ |+
T Consensus 713 Ns~~~Rigselkamvqap-pgy~LVgaDvdsqElwiaa~lgda~~~~~hg~ta~gwM~Lag~ks~gtdlhs~ta~~l-gi 790 (1075)
T KOG3657|consen 713 NARPDRIGSELKAMVQAP-PGYRLVGADVDSQELWIAALLGDASAEGVHGKTAFGWMTLAGSKSDGTDLHSKTASQL-GI 790 (1075)
T ss_pred ccChhhhhHHHHHhhcCC-CcceEeeccccHHHHHHHHHhhhhhhhcccCcchhhhhhhcCccccCchHhHhhhhhc-cc
Confidence 344566666899999997 99999999999999999888763 1 11 11112223789999998765 44
Q ss_pred CCCCCChhhhcccchhhhhhhcCCChhhhhh---hcC--CCHHHHHHHHHHHHHhChhHH-HHHHHHHHHHHhc------
Q 000107 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSE---QLN--CSSNEAKEKIKSFKSSFPGVA-SWLHVAVSSCHQK------ 2046 (2191)
Q Consensus 1979 ~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~---~l~--is~~eA~~~i~~f~~~yp~v~-~~~~~~~~~a~~~------ 2046 (2191)
.|..||.+|||-|||.|..--.+ +.+ .+.+||+..-...|..-.|-+ ..++..+....+.
T Consensus 791 --------Sr~hakv~Ny~riygag~~fa~~ll~~fnp~l~~~Ea~~~A~~l~~~tkG~~~~rlk~e~~~~e~~~~~~~~ 862 (1075)
T KOG3657|consen 791 --------SRNHAKVFNYARIYGAGQTFAEKLLMRFNPSLTQSEAKSKASQLFKLTKGDRAKRLKVEVRMVENSLVCKIL 862 (1075)
T ss_pred --------cHhhhhhccHHHHhcCCcchHHHhHHhhCCCCchHHHHHHHHHHHHhhcCceeeehHhHHHHhhhhhhchhh
Confidence 59999999999999999653222 222 788999988777777777632 2222221111111
Q ss_pred ----CeE------EcccCCeeecCcccCCC-----------------------h-----hhh-hhhhhhhhHhhhHHHHH
Q 000107 2047 ----GYV------ESLKGRKRFLSKIKFGN-----------------------N-----KEK-SKAQRQAVNSICQGSAA 2087 (2191)
Q Consensus 2047 ----GyV------~Tl~GRrr~lp~i~s~~-----------------------~-----~~r-~~aeRqAvNt~iQGsAA 2087 (2191)
+|+ --..-||...-+-.|.. . ..+ ..--+.-+|++||.||-
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~w~gg~es~~fn~lesia~~~~prtpvlgc~is~sl~~~~~~~~~f~~srinwvvqssav 942 (1075)
T KOG3657|consen 863 TIDGIYLIYSIYENEVEPRRLWVGGTESSMFNKLESIATAHDPRTPVLGCQISRSLEKLPEGEPKFLPSRINWVVQSSAV 942 (1075)
T ss_pred hhhhhhhhhhhhhcccchhhhccCchHHHHHHHHHHHhhccCCCCCeeccchhhhhcccccCCcccccceeeEEeeccch
Confidence 110 00001111111100000 0 000 01235669999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHH--HHHHHHHhccc
Q 000107 2088 DIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAV--SLVQKCMESAA 2157 (2191)
Q Consensus 2088 DI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~--~~vk~~Me~a~ 2157 (2191)
|.+.+-++.+.-.+..+ +.++|+++.||||+-|-|.|++...+| -.|.++|..|+
T Consensus 943 d~lhlllvsm~wl~~~y---------------~i~~rfcisihdevrylv~e~d~~raalalqisnl~tr~~ 999 (1075)
T KOG3657|consen 943 DFLHLLLVSMQWLCDTY---------------KIDARFCISIHDEVRYLVKEEDAPRAALALQISNLLTRAM 999 (1075)
T ss_pred hHHHHHHHHHHHHHhhc---------------ccceEEEEEehHhHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999998777665 678999999999999999999886654 44556676664
|
|
| >cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-09 Score=117.44 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=117.4
Q ss_pred HHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhH
Q 000107 1499 DCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQ 1578 (2191)
Q Consensus 1499 ~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 (2191)
..++..+...+.++||++..+. ....-.+.|+++|.+ +.+||+++.. . .
T Consensus 3 ~~~~~~l~~~~~l~~~~e~~~~----~~~~~~~~~i~l~~~-~~~~~i~~~~-~-~------------------------ 51 (178)
T cd06142 3 EDLCERLASAGVIAVDTEFMRL----NTYYPRLCLIQISTG-GEVYLIDPLA-I-G------------------------ 51 (178)
T ss_pred HHHHHHHhcCCeEEEECCccCC----CcCCCceEEEEEeeC-CCEEEEeCCC-c-c------------------------
Confidence 3445445445588999854321 011235889999977 5588887531 0 0
Q ss_pred HHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhc-CcccccccCccccccccccccccccccccccCCCCccchHHH
Q 000107 1579 LEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA-AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCI 1657 (2191)
Q Consensus 1579 ~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~-gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~l 1657 (2191)
.+..|+++|+++++.|++||+|++++.|.++ |+. .+ ..+|+++
T Consensus 52 ------~~~~l~~ll~~~~i~kv~~d~K~~~~~L~~~~gi~-~~-----------------------------~~~D~~l 95 (178)
T cd06142 52 ------DLSPLKELLADPNIVKVFHAAREDLELLKRDFGIL-PQ-----------------------------NLFDTQI 95 (178)
T ss_pred ------cHHHHHHHHcCCCceEEEeccHHHHHHHHHHcCCC-CC-----------------------------CcccHHH
Confidence 1245788999999999999999999999876 776 32 1589999
Q ss_pred HHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1658 VSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALL 1736 (2191)
Q Consensus 1658 AawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~~L~~l~~ 1736 (2191)
|+||++|+.. + +|..++.++++..... ....++|. .++......|++.|+.++++|+..|.++|++.++.++|
T Consensus 96 aayLl~p~~~-~---~l~~l~~~~l~~~~~~-~~~~~~w~~~~l~~~~~~yaa~~a~~l~~L~~~l~~~L~e~~l~~L~- 169 (178)
T cd06142 96 AARLLGLGDS-V---GLAALVEELLGVELDK-GEQRSDWSKRPLTDEQLEYAALDVRYLLPLYEKLKEELEEEGRLEWA- 169 (178)
T ss_pred HHHHhCCCcc-c---cHHHHHHHHhCCCCCc-ccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcHHHH-
Confidence 9999999743 3 4666666666544211 11234443 22334456799999999999999999999999999987
Q ss_pred hhhhhH
Q 000107 1737 NIEIPL 1742 (2191)
Q Consensus 1737 ~iEmpl 1742 (2191)
.+|+..
T Consensus 170 ~~~~~~ 175 (178)
T cd06142 170 EEECEL 175 (178)
T ss_pred HHHHHH
Confidence 456654
|
Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein. |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-09 Score=131.31 Aligned_cols=146 Identities=16% Similarity=0.232 Sum_probs=93.5
Q ss_pred CCcCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 503 LDLSSWLPSEICSIYKKRGISKLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 503 l~L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
+|+.-.-|.++...+.-+.-.+|+|+|++|+... ++..+..-=+.+..|+|||+.++ -|.+.+. ..++||++|..
T Consensus 140 IDW~~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala--~~~iL~LvPSI 216 (1518)
T COG4889 140 IDWDIFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA--AARILFLVPSI 216 (1518)
T ss_pred CChhhcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh--hhheEeecchH
Confidence 4443333333333333334468999999999751 12223333344557999999984 3444443 37899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-----------------------------CCCCCceEEEchHHHHHHH
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-----------------------------LPKDTSVAVCTIEKANSLV 631 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-----------------------------l~~~~~IiV~TpEkl~~Ll 631 (2191)
+|..|..++|..- ..+.++...+.++...+. ...+.-|++||+..+..+-
T Consensus 217 sLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~ 295 (1518)
T COG4889 217 SLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK 295 (1518)
T ss_pred HHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH
Confidence 9999999888653 334555555555432211 1123469999998876554
Q ss_pred HHhhhcCCCCccceEEEcccccc
Q 000107 632 NRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 632 ~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.. ...-+..+++||.||+|+-
T Consensus 296 eA--Qe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 296 EA--QEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred HH--HHcCCCCccEEEecchhcc
Confidence 33 4557889999999999984
|
|
| >smart00474 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=113.92 Aligned_cols=167 Identities=14% Similarity=0.203 Sum_probs=111.2
Q ss_pred eccCcccHHHHHHHHh-hCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCC
Q 000107 1491 AINASGGFDCFLDRWE-ATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSD 1569 (2191)
Q Consensus 1491 ~v~~~~~~~~~l~~~~-~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~ 1569 (2191)
++++...+..+++++. ....+++|++..+. ....-.+.|+++|+. +..+|++.....
T Consensus 3 ~i~~~~~~~~~~~~~~~~~~~l~~~~e~~~~----~~~~~~~~~l~l~~~-~~~~~i~~~~~~----------------- 60 (172)
T smart00474 3 VVTDSETLEELLEKLRAAGGEVALDTETTGL----NSYSGKLVLIQISVT-GEGAFIIDPLAL----------------- 60 (172)
T ss_pred EecCHHHHHHHHHHHHhcCCeEEEeccccCC----ccCCCCEEEEEEeEc-CCceEEEEeccc-----------------
Confidence 4556666677666665 45689999865321 011235889999975 446787632110
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCC
Q 000107 1570 KNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHL 1649 (2191)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1649 (2191)
...+..++++|++..+.|++||+|+++++|+++|+.+.+
T Consensus 61 -------------~~~~~~l~~~l~~~~~~kv~~d~k~~~~~L~~~gi~~~~---------------------------- 99 (172)
T smart00474 61 -------------GDDLEILKDLLEDETITKVGHNAKFDLHVLARFGIELEN---------------------------- 99 (172)
T ss_pred -------------hhhHHHHHHHhcCCCceEEEechHHHHHHHHHCCCcccc----------------------------
Confidence 011345788999999999999999999999887776543
Q ss_pred CccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhh-hHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1650 KDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQ-MRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1650 ~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~-~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.+||++|+||++|....+ +|..++..+++.......+ .+.|... ....+..|++.|+.++++|++.|.++|
T Consensus 100 --~~D~~laayll~p~~~~~---~l~~l~~~~l~~~~~~~~~-~~~~~~~~l~~~~~~ya~~~a~~~~~L~~~l~~~l 171 (172)
T smart00474 100 --IFDTMLAAYLLLGGPSKH---GLATLLKEYLGVELDKEEQ-KSDWGARPLSEEQLQYAAEDADALLRLYEKLEKEL 171 (172)
T ss_pred --hhHHHHHHHHHcCCCCcC---CHHHHHHHHhCCCCCcccC-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 389999999999975434 4666666666544211112 2344221 123356699999999999999988765
|
3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes |
| >TIGR01388 rnd ribonuclease D | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=128.16 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=124.2
Q ss_pred ccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccce-EEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCC
Q 000107 1492 INASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFE-IHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDK 1570 (2191)
Q Consensus 1492 v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~-i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~ 1570 (2191)
|++..++..+++.+...+.++||+|+.+.. ..++ +.-|.++. ++.+|.|+.-..
T Consensus 2 I~t~~~l~~~~~~l~~~~~ia~DtE~~~~~-----~y~~~l~LiQia~-~~~~~liD~~~~------------------- 56 (367)
T TIGR01388 2 ITTDDELATVCEAVRTFPFVALDTEFVRER-----TFWPQLGLIQVAD-GEQLALIDPLVI------------------- 56 (367)
T ss_pred cCCHHHHHHHHHHHhcCCEEEEeccccCCC-----CCCCcceEEEEee-CCeEEEEeCCCc-------------------
Confidence 567888999999999999999999986431 1122 33345554 445666654210
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCC
Q 000107 1571 NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLK 1650 (2191)
Q Consensus 1571 ~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 (2191)
..+..|.++|+++++.|++||+|+|+.+|++.+...++
T Consensus 57 -------------~~~~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~~~~~~----------------------------- 94 (367)
T TIGR01388 57 -------------IDWSPLKELLRDESVVKVLHAASEDLEVFLNLFGELPQ----------------------------- 94 (367)
T ss_pred -------------ccHHHHHHHHCCCCceEEEeecHHHHHHHHHHhCCCCC-----------------------------
Confidence 01346788999999999999999999999876443332
Q ss_pred ccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCch-hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1651 DGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRW-KNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1651 ~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~-~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
..|||++|+||++|+.. + +|..++.++++.+..+. .+...| ..++...+..||+.||.+++.||..|..+|.+.
T Consensus 95 ~~fDtqlAa~lL~~~~~-~---~l~~Lv~~~Lg~~l~K~-~~~sdW~~rPL~~~q~~YAa~Dv~~L~~L~~~L~~~L~~~ 169 (367)
T TIGR01388 95 PLFDTQIAAAFCGFGMS-M---GYAKLVQEVLGVELDKS-ESRTDWLARPLTDAQLEYAAADVTYLLPLYAKLMERLEES 169 (367)
T ss_pred CcccHHHHHHHhCCCCC-c---cHHHHHHHHcCCCCCcc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 25999999999998643 3 57777888877664322 122335 334445577899999999999999999999877
Q ss_pred HHHHHHHhhhhh
Q 000107 1730 ELIEALLNIEIP 1741 (2191)
Q Consensus 1730 ~L~~l~~~iEmp 1741 (2191)
+....+ ..|+.
T Consensus 170 g~~~w~-~ee~~ 180 (367)
T TIGR01388 170 GRLAWL-EEECT 180 (367)
T ss_pred CcHHHH-HHHHH
Confidence 665543 33554
|
This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-08 Score=132.76 Aligned_cols=73 Identities=16% Similarity=0.048 Sum_probs=60.1
Q ss_pred cCCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 520 RGISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
....++++.|.+.+.. ..+..++.+++-||||+|||+.|+++++......+++++|.++|+.|-.|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 3445899999988753 123456779999999999999999999998888889999999999999998876543
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=120.04 Aligned_cols=328 Identities=18% Similarity=0.217 Sum_probs=190.4
Q ss_pred CCCCHHHHHhhhhcc--cccCCeEEEEcCCCCchhHHHH--HHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 523 SKLYPWQVECLHVDG--VLQRRNLVYCASTSAGKSFVAE--ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~--il~gknlIi~APTGSGKTlvae--l~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..|+++|++++.... ..++.--|+.-.-|=|||.... |+.|.+--.--+.+|||+|. .+..|...+|..++..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~-- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP-- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--
Confidence 578999999998611 1256778999999999996543 33333210112589999996 6678888888888764
Q ss_pred CeEEEEeccCCCCC-----------------CCCCCceEEEchHHHHHHHHHhhhcCC-CCccceEEEcccccccccchh
Q 000107 599 RHVRSYYGNQGGGS-----------------LPKDTSVAVCTIEKANSLVNRMLEEGR-LSEIGIIVIDELHMVADQNRG 660 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~-----------------l~~~~~IiV~TpEkl~~Ll~~l~~~~~-L~~l~lVVIDEaH~l~d~~RG 660 (2191)
++|..++|...... ...+..|+|+|++.+--. ++.. =...+++|+||.|.|-.+
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-----~d~l~~~~W~y~ILDEGH~IrNp--- 352 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-----GDDLLGILWDYVILDEGHRIRNP--- 352 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-----CcccccccccEEEecCcccccCC---
Confidence 57888887654211 122467999999875221 1111 124689999999999654
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-C-CHHHHHHHhh---cc------ccccccc
Q 000107 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-P-NVAAVADWLQ---AA------LYETNFR 729 (2191)
Q Consensus 661 ~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~-N~~~la~wL~---a~------l~~~~~R 729 (2191)
..+.-++.... ...+.|+||.|. - |+.++...++ .. .|...|.
T Consensus 353 -ns~islackki-------------------------~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387|consen 353 -NSKISLACKKI-------------------------RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE 406 (923)
T ss_pred -ccHHHHHHHhc-------------------------cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh
Confidence 33433433321 234678888883 2 4666554332 11 1211111
Q ss_pred cccceE--EEEe----------------------------------------ccccccchhhHHHHHHHh----------
Q 000107 730 PVPLEE--YIKV----------------------------------------GNAIYSKKMDVVRTILTA---------- 757 (2191)
Q Consensus 730 pvpL~e--~i~~----------------------------------------~~~~~~~~~~~~r~l~~~---------- 757 (2191)
+|+.. |-.. ...++..-...-+.++..
T Consensus 407 -~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i 485 (923)
T KOG0387|consen 407 -HPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI 485 (923)
T ss_pred -hheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH
Confidence 01000 0000 000000000000000000
Q ss_pred -----------------------------hccCC----------CChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHH
Q 000107 758 -----------------------------ANLGG----------KDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 758 -----------------------------~~~~~----------~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
..... .....+..++....+.|..+|+|..++....-+-..
T Consensus 486 ~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 486 LNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred HcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHH
Confidence 00000 112345556666666777777777776643322222
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCC-ce-EEEec
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL-VR-VLTAT 876 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~-ik-VLVAT 876 (2191)
|.. .-.+...-+-|..+...|..+.+.|.++. +. .|++|
T Consensus 566 L~~---------------------------------------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 566 LRR---------------------------------------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred HHh---------------------------------------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 211 11233555678889999999999999765 33 56788
Q ss_pred ccccccCCCCC-ceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 877 STLAAGVNLPA-RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 877 stLa~GVNLPa-v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.+-.-|+||-. -||||-.|- .+++.=.|-.-||-|.|+.+.-.+|.+.+..
T Consensus 607 rvGGLGlNLTgAnRVIIfDPd-----WNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPD-----WNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred cccccccccccCceEEEECCC-----CCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 89999999986 566663332 2666778999999999988788888888764
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-07 Score=118.57 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=105.4
Q ss_pred CCCHHHHHhhhhc-----ccc---cCCeEEEEcCCCCchhHHHHHHHHHHHHh--cC-----CEEEEEchhHHHHHHHHH
Q 000107 524 KLYPWQVECLHVD-----GVL---QRRNLVYCASTSAGKSFVAEILMLRRLIS--TG-----KMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 524 ~l~p~Q~eal~~~-----~il---~gknlIi~APTGSGKTlvael~iL~~ll~--~g-----~kaL~I~P~raLA~q~~~ 588 (2191)
.|+|+|.+.+... +.. ...-.|++-..|+|||+.....| ..+++ .+ .++|||+|- .|+.-+.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Isfl-wtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFI-WTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHH-HHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 6899999988641 110 22346777889999999875444 44443 34 579999995 78888888
Q ss_pred HHHHHhhccCCeEEEEeccCCC-----------CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGG-----------GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~-----------~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
+|.++...-.+.+..++|.... +...-..-|++-++|.+....+. .....++++|+||.|.+-..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCCccch
Confidence 8888776544556666666542 00111356888889987655554 34667899999999998653
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHHHHhh
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVADWLQ 720 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la~wL~ 720 (2191)
...+-..|.++ .-.+.|++|.|+= |..++...|+
T Consensus 392 --~s~~~kaL~~l---------------------------~t~rRVLLSGTp~QNdl~EyFnlL~ 427 (776)
T KOG0390|consen 392 --DSLTLKALSSL---------------------------KTPRRVLLTGTPIQNDLKEYFNLLD 427 (776)
T ss_pred --hhHHHHHHHhc---------------------------CCCceEEeeCCcccccHHHHHHHHh
Confidence 12222333333 2346799999952 4666555554
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-07 Score=120.41 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHhhhh--ccccc-----CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 521 GISKLYPWQVECLHV--DGVLQ-----RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~--~~il~-----gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
|| +.++-|.+-... ..+.. ++.++|-||||+|||++|++|++......++++||-..|++|-.|..
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 56 688889884432 12333 47899999999999999999998777778999999999999998876
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-09 Score=102.24 Aligned_cols=72 Identities=35% Similarity=0.482 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCC
Q 000107 843 PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG 918 (2191)
Q Consensus 843 ~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G 918 (2191)
...+..+||+++.++|..+++.|+.|...|||+|++++.|+|+|.+..||.... +++...|.||+||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC----CCCHHHHHHhhcccccCC
Confidence 456999999999999999999999999999999999999999998777764333 358889999999999976
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=124.52 Aligned_cols=307 Identities=18% Similarity=0.155 Sum_probs=171.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHH-HhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC-CCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRL-ISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-KDT 617 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~l-l~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~-~~~ 617 (2191)
.....+|-+|.|+|||....- .|+.. ...+.++|+|.-+++|+.+...+|+...- .|+. .|.+.....+. ...
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~-wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv---~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIR-WLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFV---NYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHH-HHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccce---eeecccccccccccc
Confidence 456789999999999987644 44444 35678999999999999999988865311 1221 22222222222 234
Q ss_pred ceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH---HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000107 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL---LELLLTKLRYAAGEGTSDSSSGENSGTSSGKA 694 (2191)
Q Consensus 618 ~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~---lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~ 694 (2191)
+-+++..+.+..+ ....+.++++|||||+--+...-+.+. .+.++..|+.+..
T Consensus 123 ~rLivqIdSL~R~-----~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~------------------- 178 (824)
T PF02399_consen 123 DRLIVQIDSLHRL-----DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR------------------- 178 (824)
T ss_pred CeEEEEehhhhhc-----ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH-------------------
Confidence 5666666654332 334577899999999976654322222 3344444544432
Q ss_pred CCCCCceEEEEeccCCC--HHHHHHHhhccccccccccccceEEEEecccc----ccc--hhhHHHHHHHhhc-------
Q 000107 695 DPAHGLQIVGMSATMPN--VAAVADWLQAALYETNFRPVPLEEYIKVGNAI----YSK--KMDVVRTILTAAN------- 759 (2191)
Q Consensus 695 ~~~~~iqII~mSATL~N--~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~----~~~--~~~~~r~l~~~~~------- 759 (2191)
.--++|+|-||+.+ ++-++..-+..-+ .+-..+|...+... .-. ....+.......+
T Consensus 179 ---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i-----~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 250 (824)
T PF02399_consen 179 ---NAKTVIVMDADLNDQTVDFLASCRPDENI-----HVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSP 250 (824)
T ss_pred ---hCCeEEEecCCCCHHHHHHHHHhCCCCcE-----EEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCC
Confidence 23479999999974 2223322221100 00011111111000 000 0001110000000
Q ss_pred ------------cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 760 ------------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 760 ------------~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
....+.......+..-+..|+.+-||++|...++.+++.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~------------------------- 305 (824)
T PF02399_consen 251 TPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARF------------------------- 305 (824)
T ss_pred CcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhc-------------------------
Confidence 0012233445556666678899999999988877666655432
Q ss_pred hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce--EEeecCCCCCcccCcc
Q 000107 828 RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR--VIFRQPRIGRDFIDGT 905 (2191)
Q Consensus 828 ~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~--VVI~~p~~g~~~is~~ 905 (2191)
...|..+++.-... .|+. =+..+|++=|+++..|+++.... -++-+..+...-.+..
T Consensus 306 ---------------~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~ 364 (824)
T PF02399_consen 306 ---------------TKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMV 364 (824)
T ss_pred ---------------CCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHH
Confidence 11255566544433 3332 35679999999999999987542 2322222222222555
Q ss_pred cccccccccCCCCCCCceEEEEEeChh
Q 000107 906 RYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
+..||+||.-... ..+.++.++..
T Consensus 365 s~~Q~lgRvR~l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 365 SVYQMLGRVRSLL---DNEIYVYIDAS 388 (824)
T ss_pred HHHHHHHHHHhhc---cCeEEEEEecc
Confidence 6899999997665 66778877764
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-08 Score=103.84 Aligned_cols=135 Identities=20% Similarity=0.162 Sum_probs=84.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
+|+--++-..+|+|||.-.+--+++..+.++.++|++.|||.++.++.+.++. ..+++. ..-. ......+.-|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~----~~~~~~--t~~~-~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG----LPVRFH--TNAR-MRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT----SSEEEE--STTS-S----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc----CCcccC--ceee-eccccCCCcc
Confidence 56778899999999999877778888888999999999999999999877643 233322 1111 1122345568
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 699 (2191)
-|+|...+...+ .....+.++++||+||+|...-. --.....++.... ...
T Consensus 76 ~vMc~at~~~~~---~~p~~~~~yd~II~DEcH~~Dp~-----sIA~rg~l~~~~~---------------------~g~ 126 (148)
T PF07652_consen 76 DVMCHATYGHFL---LNPCRLKNYDVIIMDECHFTDPT-----SIAARGYLRELAE---------------------SGE 126 (148)
T ss_dssp EEEEHHHHHHHH---HTSSCTTS-SEEEECTTT--SHH-----HHHHHHHHHHHHH---------------------TTS
T ss_pred cccccHHHHHHh---cCcccccCccEEEEeccccCCHH-----HHhhheeHHHhhh---------------------ccC
Confidence 889988755444 34557889999999999995422 1122233333322 134
Q ss_pred ceEEEEeccCC
Q 000107 700 LQIVGMSATMP 710 (2191)
Q Consensus 700 iqII~mSATL~ 710 (2191)
..+|.||||.|
T Consensus 127 ~~~i~mTATPP 137 (148)
T PF07652_consen 127 AKVIFMTATPP 137 (148)
T ss_dssp -EEEEEESS-T
T ss_pred eeEEEEeCCCC
Confidence 68999999976
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK10829 ribonuclease D; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-08 Score=121.04 Aligned_cols=175 Identities=10% Similarity=0.071 Sum_probs=128.6
Q ss_pred ceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccce-EEEEEEEEeCCcEEEEeCCCCcccccccccchhccCC
Q 000107 1489 INAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFE-IHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGS 1567 (2191)
Q Consensus 1489 i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~-i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~ 1567 (2191)
+.+|+++..+..+++.+...+.+++|+|+.+. ...++ +.-|.++. +..+|.|+.-..
T Consensus 3 ~~~I~t~~~L~~~~~~l~~~~~lalDtEf~~~-----~ty~~~l~LiQl~~-~~~~~LiD~l~~---------------- 60 (373)
T PRK10829 3 YQMITTDDALASVCEAARAFPAIALDTEFVRT-----RTYYPQLGLIQLYD-GEQLSLIDPLGI---------------- 60 (373)
T ss_pred cEEeCCHHHHHHHHHHHhcCCeEEEecccccC-----ccCCCceeEEEEec-CCceEEEecCCc----------------
Confidence 45788999999999999999999999998743 11122 34445553 344555543100
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHH-HhcCcccccccCcccccccccccccccccccccc
Q 000107 1568 SDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVL-KHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSP 1646 (2191)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL-~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1646 (2191)
..++.|.++|+++++.||+|++.+|+..| +..|+.+.
T Consensus 61 ----------------~d~~~L~~ll~~~~ivKV~H~~~~Dl~~l~~~~g~~p~-------------------------- 98 (373)
T PRK10829 61 ----------------TDWSPFKALLRDPQVTKFLHAGSEDLEVFLNAFGELPQ-------------------------- 98 (373)
T ss_pred ----------------cchHHHHHHHcCCCeEEEEeChHhHHHHHHHHcCCCcC--------------------------
Confidence 01356888999999999999999999998 44566433
Q ss_pred CCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1647 VHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1647 ~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.+|||++|+.++.-.. .. +|..++.++++.+..+.....++...++.+.+..||+.||.+++.||..|..+|
T Consensus 99 ----~~fDTqiaa~~lg~~~-~~---gl~~Lv~~~lgv~ldK~~~~sDW~~RPLs~~ql~YAa~Dv~~L~~l~~~L~~~L 170 (373)
T PRK10829 99 ----PLIDTQILAAFCGRPL-SC---GFASMVEEYTGVTLDKSESRTDWLARPLSERQCEYAAADVFYLLPIAAKLMAET 170 (373)
T ss_pred ----CeeeHHHHHHHcCCCc-cc---cHHHHHHHHhCCccCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2599999999997321 23 577888888988776655555544567888889999999999999999999999
Q ss_pred HHHHHHHHH
Q 000107 1727 VSEELIEAL 1735 (2191)
Q Consensus 1727 ~~~~L~~l~ 1735 (2191)
.+.+....+
T Consensus 171 ~~~g~~~w~ 179 (373)
T PRK10829 171 EAAGWLPAA 179 (373)
T ss_pred HHcCcHHHH
Confidence 876665543
|
|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-08 Score=108.35 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=113.0
Q ss_pred HHHHHHHHh-hCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChh
Q 000107 1498 FDCFLDRWE-ATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPE 1576 (2191)
Q Consensus 1498 ~~~~l~~~~-~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 (2191)
++.+++++. ..+.++||+|..... ...-++.-+.+|.+++.+|.+.+..-.
T Consensus 2 l~~~~~~l~~~~~~ig~D~E~~~~~----~~~~~~~liQl~~~~~~~~l~d~~~~~------------------------ 53 (161)
T cd06129 2 LSSLCEDLSMDGDVIAFDMEWPPGR----RYYGEVALIQLCVSEEKCYLFDPLSLS------------------------ 53 (161)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCC----CCCCceEEEEEEECCCCEEEEecccCc------------------------
Confidence 567888898 899999999986431 111135556777664667777654210
Q ss_pred hHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccCCCCccchH
Q 000107 1577 HQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDM 1655 (2191)
Q Consensus 1577 ~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt 1655 (2191)
..++.|+++|+++.+.|++||+|.|+..|.+ +|+.+.+ .+|+
T Consensus 54 -------~~~~~L~~lL~d~~i~Kvg~~~k~D~~~L~~~~gi~~~~------------------------------~~D~ 96 (161)
T cd06129 54 -------VDWQGLKMLLENPSIVKALHGIEGDLWKLLRDFGEKLQR------------------------------LFDT 96 (161)
T ss_pred -------cCHHHHHHHhCCCCEEEEEeccHHHHHHHHHHcCCCccc------------------------------HhHH
Confidence 0124578899999999999999999999976 6775543 4899
Q ss_pred HHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1656 CIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1656 ~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
++|+|+++|.. .+ +|..++.++++....+. .+...|. .++...+..||+.||.+++.+|..|.
T Consensus 97 ~~aa~ll~~~~-~~---~L~~l~~~~lg~~l~K~-~~~s~W~~rpLt~~qi~YAa~Da~~l~~l~~~l~ 160 (161)
T cd06129 97 TIAANLKGLPE-RW---SLASLVEHFLGKTLDKS-ISCADWSYRPLTEDQKLYAAADVYALLIIYTKLR 160 (161)
T ss_pred HHHHHHhCCCC-Cc---hHHHHHHHHhCCCCCcc-ceeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999852 23 57777877777665332 3345565 57778889999999999999998874
|
The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome- |
| >cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=8e-08 Score=110.93 Aligned_cols=171 Identities=11% Similarity=0.080 Sum_probs=118.6
Q ss_pred HHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHH
Q 000107 1502 LDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEM 1581 (2191)
Q Consensus 1502 l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1581 (2191)
+..++..+.++||+|+.+.. .. -.+.-+.++...+.+|.+++..-. .
T Consensus 4 ~~~l~~~~~i~~D~E~~~~~----~~-~~~~LiQia~~~~~v~l~D~~~~~--~-------------------------- 50 (197)
T cd06148 4 IIHLKKQKVIGLDCEGVNLG----RK-GKLCLVQIATRTGQIYLFDILKLG--S-------------------------- 50 (197)
T ss_pred hhhhhhCCEEEEEcccccCC----CC-CCEEEEEEeeCCCcEEEEEhhhcc--c--------------------------
Confidence 45677788999999986431 11 134445666554677777764210 0
Q ss_pred HHHHHHHHHHhhccCCccEEEechHHHHHHH-HhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHH
Q 000107 1582 IKQRWKRIGEIMEKRDVRKFTWNMKVQIQVL-KHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSW 1660 (2191)
Q Consensus 1582 ~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL-~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAaw 1660 (2191)
...++.|+++|+++++.|++||+|+|+..| +.+|+.+.+ .|||++|+|
T Consensus 51 -~~~~~~L~~iLe~~~i~Kv~h~~k~D~~~L~~~~gi~~~~------------------------------~fDt~iA~~ 99 (197)
T cd06148 51 -IVFINGLKDILESKKILKVIHDCRRDSDALYHQYGIKLNN------------------------------VFDTQVADA 99 (197)
T ss_pred -hhHHHHHHHHhcCCCccEEEEechhHHHHHHHhcCccccc------------------------------eeeHHHHHH
Confidence 113467888999999999999999999998 466776543 489999999
Q ss_pred hcCCCCCC----CCchhHHHHHHHhhChHHHHH-------hhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1661 ILWPDDER----SSNPNLEKEVKKRLSSEAAAA-------ANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1661 LL~P~~~~----~~l~~L~~~~~~~l~~e~~~~-------~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
|++|.... ....+|..++.++++...... ..+...|. .++.+.+..||+.||..++.||..|...|.+
T Consensus 100 lL~~~~~~~~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~Dv~~Ll~l~~~l~~~l~~ 179 (197)
T cd06148 100 LLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMREDPKFWALRPLTEDMIRYAALDVLCLLPLYYAMLDALIS 179 (197)
T ss_pred HHHHHhcCCccccccccHHHHHHHhhCCChHHHHHHHHHHhcCchhhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 99985421 111257777888777654321 12234453 5677778899999999999999999999987
Q ss_pred HHHHHHHH
Q 000107 1729 EELIEALL 1736 (2191)
Q Consensus 1729 ~~L~~l~~ 1736 (2191)
..+...|.
T Consensus 180 ~~~~~~~~ 187 (197)
T cd06148 180 KFLKAVFK 187 (197)
T ss_pred hHHHHHHH
Confidence 65555554
|
The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif. |
| >cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=108.61 Aligned_cols=172 Identities=12% Similarity=0.133 Sum_probs=114.2
Q ss_pred CCCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhcc
Q 000107 1486 KGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIY 1565 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~ 1565 (2191)
.||+.++.+...+..+++.+...+.++++++.... .+..-++.|++++.+++ +||+++-. .
T Consensus 2 ~~~~~~i~~~~~l~~~~~~l~~~~~l~~~~e~~~~----~~~~~~~~~l~l~~~~~-~~~i~~l~-~------------- 62 (192)
T cd06147 2 ETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSY----RSYLGFTCLMQISTREE-DYIVDTLK-L------------- 62 (192)
T ss_pred CCCcEEECCHHHHHHHHHHHhcCCeEEEEeEecCC----ccCCCceEEEEEecCCC-cEEEEecc-c-------------
Confidence 37888885556677766666545578888854321 01123588999997665 78886310 0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHH-hcCcccccccCcccccccccccccccccccc
Q 000107 1566 GSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLK-HAAVSIQRFGGLNLVGTSLGLENVGSSFLLL 1644 (2191)
Q Consensus 1566 ~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2191)
...+..|+++|+++++.|++||+|.+++.|+ ++|+.+.+
T Consensus 63 -----------------~~~~~~L~~~L~~~~i~kv~~d~K~~~~~L~~~~gi~~~~----------------------- 102 (192)
T cd06147 63 -----------------RDDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVN----------------------- 102 (192)
T ss_pred -----------------ccchHHHHHHhcCCCceEEEechHHHHHHHHHHhCCCcCc-----------------------
Confidence 0012347789999999999999999999998 77876543
Q ss_pred ccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1645 SPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1645 ~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.||+|||+|||+|+ . ++ +..++.++++..... ..+...|.. .+...+..|++.++.++++|+..|.
T Consensus 103 -------~fD~~laaYLL~p~-~-~~---l~~l~~~yl~~~~~k-~~~~~~~~~~~l~~~~~~y~a~~a~~l~~L~~~L~ 169 (192)
T cd06147 103 -------LFDTGQAARVLNLP-R-HS---LAYLLQKYCNVDADK-KYQLADWRIRPLPEEMIKYAREDTHYLLYIYDRLR 169 (192)
T ss_pred -------hHHHHHHHHHhCCC-c-cc---HHHHHHHHhCCCcch-hhhccccccCCCCHHHHHHHHhhHHHHHHHHHHHH
Confidence 28999999999997 4 34 666666666543111 111111221 0022245589999999999999999
Q ss_pred HHHHHH
Q 000107 1724 KLLVSE 1729 (2191)
Q Consensus 1724 ~~L~~~ 1729 (2191)
.+|+++
T Consensus 170 ~~L~e~ 175 (192)
T cd06147 170 NELLER 175 (192)
T ss_pred HHHHHh
Confidence 999764
|
Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome. |
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-08 Score=120.84 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcC
Q 000107 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTT 1235 (2191)
Q Consensus 1156 fy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ 1235 (2191)
+++.++|++++++.++..- . -.+|+..++++|.|++.++..+|...||......+-+|.++|.+|++.+..||++
T Consensus 81 ~K~~lLLqa~i~r~~l~~~--~---l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Q 155 (312)
T smart00611 81 VKANLLLQAHLSRLKLPSF--A---LESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQ 155 (312)
T ss_pred HHHHHHHHHHHccCCCCch--h---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCcccc
Confidence 4589999999999865211 1 3689999999999999999999999999888888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHh
Q 000107 1236 IPYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271 (2191)
Q Consensus 1236 ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~ 1271 (2191)
||++++.++|.|.++|++|+.+|..++++++..++.
T Consensus 156 lp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~ 191 (312)
T smart00611 156 LPHLPEEILKRLEKKKVLSLEDLLELEDEERGELLG 191 (312)
T ss_pred CCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHc
Confidence 999999999999999999999999999999988863
|
|
| >cd00007 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=101.77 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=96.7
Q ss_pred eEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHHH
Q 000107 1510 EFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRI 1589 (2191)
Q Consensus 1510 ~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1589 (2191)
.+++|++..+. ......+.++++|++ +..+|++..+.. ...++.+
T Consensus 2 ~l~~d~e~~~~----~~~~~~i~~~~l~~~-~~~~~i~~~~~~------------------------------~~~~~~l 46 (155)
T cd00007 2 EVAFDTETTGL----NYHRGKLVGIQIATA-GEAAYIPDELEL------------------------------EEDLEAL 46 (155)
T ss_pred ceEEEEecCCC----CcCCCeEEEEEEEEC-CcEEEEEcCCCH------------------------------HHHHHHH
Confidence 36778764322 111236889999987 557888754210 1234568
Q ss_pred HHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCCC
Q 000107 1590 GEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERS 1669 (2191)
Q Consensus 1590 ~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~~ 1669 (2191)
.++|+++.+.|++||+|+++.+|.+.++...+ .++||++|+|+++|+...+
T Consensus 47 ~~~l~~~~~~~v~~~~k~d~~~L~~~~~~~~~-----------------------------~~~D~~~~ayll~~~~~~~ 97 (155)
T cd00007 47 KELLEDEDITKVGHDAKFDLVVLARDGIELPG-----------------------------NIFDTMLAAYLLNPGEGSH 97 (155)
T ss_pred HHHHcCCCCcEEeccHHHHHHHHHHCCCCCCC-----------------------------CcccHHHHHHHhCCCCCcC
Confidence 88999998999999999999999887654332 2589999999999975334
Q ss_pred CchhHHHHHHHhhChHH---HHHhhccCc-h-hhhhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000107 1670 SNPNLEKEVKKRLSSEA---AAAANRSGR-W-KNQMRRAAHNGCCRRVAQTRALCSVLWKL 1725 (2191)
Q Consensus 1670 ~l~~L~~~~~~~l~~e~---~~~~~~~g~-~-~~~~~~~~~~ya~~Da~~t~~L~~~L~~~ 1725 (2191)
+|+.++.++++... ....+. ++ | .......+..|++.|+.++++|+..+.++
T Consensus 98 ---~l~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~~da~~~~~l~~~l~~~ 154 (155)
T cd00007 98 ---SLDDLAKEYLGIELDKDEQIYGK-GAKTFARPLSEELLEYAAEDADALLRLYEKLLEE 154 (155)
T ss_pred ---CHHHHHHHHcCCCCccHHHHhcC-CCCccccCCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 46666666654431 111111 10 1 11123345669999999999999888754
|
The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D). |
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=106.35 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=112.8
Q ss_pred CcccHHHHHHHHh-hCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCC
Q 000107 1494 ASGGFDCFLDRWE-ATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNV 1572 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~-~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~ 1572 (2191)
+...+..+++.+. ....++||+|....... .....+.-|.+| .++.+|.+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~ig~D~E~~~~~~~--~~~~~~~liQl~-~~~~~~l~~~~~~~-------------------- 59 (170)
T cd06141 3 SAQDAEEAVKELLGKEKVVGFDTEWRPSFRK--GKRNKVALLQLA-TESRCLLFQLAHMD-------------------- 59 (170)
T ss_pred CHHHHHHHHHHHhcCCCEEEEeCccCCccCC--CCCCCceEEEEe-cCCcEEEEEhhhhh--------------------
Confidence 4566788889998 89999999998643110 011134445666 44567777664210
Q ss_pred CChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHH-hcCcccccccCccccccccccccccccccccccCCCCc
Q 000107 1573 LTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLK-HAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKD 1651 (2191)
Q Consensus 1573 ~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1651 (2191)
.....|+++|+++.+.|++||+|+|+..|. .+|+.+.+
T Consensus 60 -----------~~~~~l~~ll~~~~i~kv~~~~k~D~~~L~~~~g~~~~~------------------------------ 98 (170)
T cd06141 60 -----------KLPPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRG------------------------------ 98 (170)
T ss_pred -----------cccHHHHHHhcCCCeeEEEeeeHHHHHHHHhHcCCCCCC------------------------------
Confidence 112457889999999999999999999997 66776543
Q ss_pred cchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHH-HhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAA-AANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1652 ~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~-~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.+|+++|+|+++|..... +|..++..+++.+... ...+...|. .++......||+.||.+++.||..|.
T Consensus 99 ~~Dl~~aa~ll~~~~~~~---~l~~l~~~~l~~~~~k~k~~~~s~W~~rpLt~~qi~YAa~Da~~~~~l~~~l~ 169 (170)
T cd06141 99 VVDLSHLAKRVGPRRKLV---SLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYASLELYRKLL 169 (170)
T ss_pred eeeHHHHHHHhCCCcCCc---cHHHHHHHHcCcccCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999964333 4666677777665441 111234454 45777788999999999999998874
|
WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability. |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-06 Score=117.82 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred CCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC--CEEEEEchhHHHHHHHHHHHHHH
Q 000107 521 GISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG--KMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g--~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
.|..+||.|.+.... ..+..++++++-+|||+|||++.+.+.|......+ .+++|.+.|.+=..|..++++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 467779999987653 23557999999999999999999999998766545 68999999999888888888774
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=122.31 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=191.6
Q ss_pred CCCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 523 SKLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
.+|+++|.+-++.. .+..++|+|+.-.-|-|||+.-. ..|..+.. -.+..|+|+|.-.+. -..+.|..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---
Confidence 68999999998762 12368999999999999997643 23333332 234678899975443 3334444433
Q ss_pred CCeEEEEeccCCCCC--------CCC-----CCceEEEchHHHHHHHHHhhhcCCCCc--cceEEEcccccccccchhHH
Q 000107 598 GRHVRSYYGNQGGGS--------LPK-----DTSVAVCTIEKANSLVNRMLEEGRLSE--IGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~--------l~~-----~~~IiV~TpEkl~~Ll~~l~~~~~L~~--l~lVVIDEaH~l~d~~RG~~ 662 (2191)
...+.+|+|+..... ... ..+++++|+|.++. ....|+. ..+++|||+|.|-.. -...
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk------Dk~~L~~i~w~~~~vDeahrLkN~-~~~l 516 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK------DKAELSKIPWRYLLVDEAHRLKND-ESKL 516 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc------cHhhhccCCcceeeecHHhhcCch-HHHH
Confidence 667888999864321 111 37899999998533 2223333 479999999998753 1223
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-C-CHHHHHHHhh---cccc------cccc---
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-P-NVAAVADWLQ---AALY------ETNF--- 728 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~-N~~~la~wL~---a~l~------~~~~--- 728 (2191)
++. |..++. -.-++++.|. . |+++|...|+ ..-| ..++
T Consensus 517 ~~~-l~~f~~---------------------------~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~ 568 (1373)
T KOG0384|consen 517 YES-LNQFKM---------------------------NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE 568 (1373)
T ss_pred HHH-HHHhcc---------------------------cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch
Confidence 333 333321 1346777773 3 4777776553 1100 0000
Q ss_pred ------------ccc---------------cceEEEEecccc-----c----cc---------------hhhHHHHHHHh
Q 000107 729 ------------RPV---------------PLEEYIKVGNAI-----Y----SK---------------KMDVVRTILTA 757 (2191)
Q Consensus 729 ------------Rpv---------------pL~e~i~~~~~~-----~----~~---------------~~~~~r~l~~~ 757 (2191)
+|. ..+..+.+.-.. | .+ -..++-.+.+.
T Consensus 569 ~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKc 648 (1373)
T KOG0384|consen 569 TEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKC 648 (1373)
T ss_pred hHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHh
Confidence 111 111122211110 0 00 01111111111
Q ss_pred hcc----C-------------------------CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 758 ANL----G-------------------------GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 758 ~~~----~-------------------------~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
.+. . ..+.-.|-.|+..+...|++||||..-.+...-++..|.. .++
T Consensus 649 cNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~----r~y 724 (1373)
T KOG0384|consen 649 CNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL----RGY 724 (1373)
T ss_pred cCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH----cCC
Confidence 100 0 0011112234455556789999998776655555555532 111
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhc---CCceEEEecccccccCCC
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK---GLVRVLTATSTLAAGVNL 885 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~---G~ikVLVATstLa~GVNL 885 (2191)
.---+-|++..+-|+..++.|.. .....|+||..-.-||||
T Consensus 725 ------------------------------------pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 725 ------------------------------------PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred ------------------------------------cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 12235688889999999999974 456789999999999999
Q ss_pred CCc-eEEe-ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 886 PAR-RVIF-RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 886 Pav-~VVI-~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
-+. +||| +++. ++..=+|..-||-|-|+...-.+|.|++..-
T Consensus 769 atADTVIIFDSDW------NPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 769 ATADTVIIFDSDW------NPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccceEEEeCCCC------CcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 874 4544 4444 5666779999999999888889999998754
|
|
| >COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=112.74 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=127.5
Q ss_pred CcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccc--eEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCC
Q 000107 1494 ASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLF--EIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKN 1571 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~--~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~ 1571 (2191)
+...++.++..+.+.+.+++|+|+.+. .+| .+.-|.+|-+++ ++.|..-...
T Consensus 3 ~~~~l~~~~~~~~~~~~iAiDTEf~r~------~t~~p~LcLIQi~~~e~-~~lIdpl~~~------------------- 56 (361)
T COG0349 3 TGDLLAAACALLRGSKAIAIDTEFMRL------RTYYPRLCLIQISDGEG-ASLIDPLAGI------------------- 56 (361)
T ss_pred chhHHHHHHHHhcCCCceEEecccccc------cccCCceEEEEEecCCC-ceEecccccc-------------------
Confidence 345567788888889999999999754 222 355567777666 5555432110
Q ss_pred CCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhc-CcccccccCccccccccccccccccccccccCCCC
Q 000107 1572 VLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA-AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLK 1650 (2191)
Q Consensus 1572 ~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~-gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 (2191)
..+..|..+|.++.+.||+|.+.||+.+|.+. |+.+.
T Consensus 57 ------------~d~~~l~~Ll~d~~v~KIfHaa~~DL~~l~~~~g~~p~------------------------------ 94 (361)
T COG0349 57 ------------LDLPPLVALLADPNVVKIFHAARFDLEVLLNLFGLLPT------------------------------ 94 (361)
T ss_pred ------------cccchHHHHhcCCceeeeeccccccHHHHHHhcCCCCC------------------------------
Confidence 11245788999999999999999999999885 33222
Q ss_pred ccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1651 DGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEE 1730 (2191)
Q Consensus 1651 ~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~~ 1730 (2191)
.+|||.||+-+..-.. +++ |++++.++++.+..+..+.+.+.+.++.+.+.+||+.||.+.+.||..|...|.+++
T Consensus 95 plfdTqiAa~l~g~~~-~~g---l~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~~~~ 170 (361)
T COG0349 95 PLFDTQIAAKLAGFGT-SHG---LADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLYDKLTEELAREG 170 (361)
T ss_pred chhHHHHHHHHhCCcc-ccc---HHHHHHHHhCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2699999999998654 664 677788888888766555555556678888999999999999999999999999877
Q ss_pred HHHHHH
Q 000107 1731 LIEALL 1736 (2191)
Q Consensus 1731 L~~l~~ 1736 (2191)
....+.
T Consensus 171 r~~~a~ 176 (361)
T COG0349 171 RLEWAE 176 (361)
T ss_pred chHHHH
Confidence 666553
|
|
| >cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=100.48 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=88.6
Q ss_pred eEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHH
Q 000107 1530 EIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQI 1609 (2191)
Q Consensus 1530 ~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl 1609 (2191)
++.|+++|.+++.+||+++.+.. . ..+.|+++|+++.+.|++||+|.++
T Consensus 17 ~~~~l~l~~~~~~~~~i~~~~~~------~-------------------------~~~~l~~~l~~~~~~kv~~d~K~~~ 65 (150)
T cd09018 17 NLVLIQLAIEPGVAALIPVAHDY------L-------------------------ALELLKPLLEDEKALKVGQNLKYDR 65 (150)
T ss_pred eEEEEEEEcCCCcEEEEEcCCcc------c-------------------------CHHHHHHHhcCCCCceeeecHHHHH
Confidence 58899999765558888764210 0 0134778999999999999999999
Q ss_pred HHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---
Q 000107 1610 QVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA--- 1686 (2191)
Q Consensus 1610 ~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~--- 1686 (2191)
+.|++.|+.+.+. .+|+++|+|||+|+...+ ++..++.++++...
T Consensus 66 ~~L~~~~~~~~~~-----------------------------~~D~~laayLl~p~~~~~---~l~~l~~~~l~~~~~~~ 113 (150)
T cd09018 66 GILLNYFIELRGI-----------------------------AFDTMLEAYILNSVAGRW---DMDSLVERWLGHKLIKF 113 (150)
T ss_pred HHHHHcCCccCCc-----------------------------chhHHHHHHHhCCCCCCC---CHHHHHHHHhCCCcccH
Confidence 9998887765532 589999999999975233 46666676665441
Q ss_pred HHHhhccCchhhhh-HHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1687 AAAANRSGRWKNQM-RRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1687 ~~~~~~~g~~~~~~-~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
....+. | |.... ......|++.|+..+++|+..|.
T Consensus 114 ~~~~~~-~-~~~~~~~~~~~~ya~~~a~~l~~L~~~l~ 149 (150)
T cd09018 114 ESIAGK-L-WFNQPLTEEQGRYAAEDADVTLQIHLKLW 149 (150)
T ss_pred HHhcCC-C-CcccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 2 42121 33345689999999998888764
|
DEDDy exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. They contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of a specific YX(3)D pattern at ExoIII. The four conserved acidic residues serve as ligands for the two metal ions required for catalysis. This family of DEDDy exonucleases includes the proofreading domains of family A DNA polymerases, as well as RNases such as RNase D and yeast Rrp6p. The Egalitarian (Egl) and Bacillus-like DNA Polymerase I subfamilies do not possess a completely conserved YX(3)D pattern at the ExoIII motif. In addition, the Bacillus-like DNA polymerase I subfamily has inactive 3'-5' exonucle |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-07 Score=120.82 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=86.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.+|++|.-. ++.-++--|.-+.||-||||++-+|+.-..+ .|+.+-+|...-.||..=++++..++..+|+.|++
T Consensus 169 ~~yDVQliG----givLh~G~IAEM~TGEGKTLvAtlp~yLnAL-~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 169 VHYDVQLIG----GVVLHQGKIAEMATGEGKTLVATLPVYLNAL-TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred cccchHHhh----hhhhcCCceeeecCCCCchhHHHHHHHHHHH-cCCCcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 566666532 2333455577999999999999999876665 46667777888899999999999999999999987
Q ss_pred EeccC-CC--CCCCCCCceEEEchHHH--HHHHHHhh---hcCCCCccceEEEccccccc
Q 000107 604 YYGNQ-GG--GSLPKDTSVAVCTIEKA--NSLVNRML---EEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 604 ~~G~~-~~--~~l~~~~~IiV~TpEkl--~~Ll~~l~---~~~~L~~l~lVVIDEaH~l~ 655 (2191)
..... .. ....-.+||.++|..-+ +.|-.++. .......+.+.||||+|-+.
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 64421 11 11112479999997654 22222221 12234568899999999654
|
|
| >cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=97.04 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=84.5
Q ss_pred ceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHH
Q 000107 1529 FEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQ 1608 (2191)
Q Consensus 1529 ~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~d 1608 (2191)
.++.|++++.+++ +||+++... .. .+.|+++|++..+.|++||+|+.
T Consensus 18 ~~~~glal~~~~~-~~yi~~~~~---~~-----------------------------~~~l~~~l~~~~~~ki~~d~K~~ 64 (151)
T cd06128 18 ANLVGLAFAIEGV-AAYIPVAHD---YA-----------------------------LELLKPLLEDEKALKVGQNLKYD 64 (151)
T ss_pred CcEEEEEEEcCCC-eEEEeCCCC---cC-----------------------------HHHHHHHHcCCCCCEEeeehHHH
Confidence 3588999997654 888874310 00 12477889988899999999999
Q ss_pred HHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChH-H-
Q 000107 1609 IQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSE-A- 1686 (2191)
Q Consensus 1609 l~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e-~- 1686 (2191)
+++|+++|+.+.+. .||+|||+|||+|+...++ +..++.+++... .
T Consensus 65 ~~~l~~~gi~l~~~-----------------------------~fD~~LAaYLL~p~~~~~~---l~~la~~yl~~~~~~ 112 (151)
T cd06128 65 RVILANYGIELRGI-----------------------------AFDTMLEAYLLDPVAGRHD---MDSLAERWLKEKTIT 112 (151)
T ss_pred HHHHHHCCCCCCCc-----------------------------chhHHHHHHHcCCCCCCCC---HHHHHHHHcCCCCcc
Confidence 99999999877642 4899999999999764234 555566665433 1
Q ss_pred -HHHhhccCchhhhh-HHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1687 -AAAANRSGRWKNQM-RRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1687 -~~~~~~~g~~~~~~-~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
....++ |+..... ......|++..+..+++|+..|.
T Consensus 113 ~~~~~gk-g~~~~~~~~~~~~~~~~~~a~~l~~L~~~l~ 150 (151)
T cd06128 113 FEEIAGK-GLTFNQIALEEAGEYAAEDAAVTLQLHLKMW 150 (151)
T ss_pred HHHHcCC-CCChhhcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112222 2100011 11123477887888888877764
|
The 3'-5' exonuclease domain of family-A DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-A DNA polymerases contain a DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-B DNA polymerases. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four invariant acidic residues that serve as ligands for the two metal ions required for catalysis. The Klenow fragment (KF) of Escherichia coli Pol I, the Thermus aquaticus (Taq) Pol I, and Bacillus stearothermophilus (BF) Pol I are examples of family-A DNA polymerases. They are involved in nucleotide excision repair and in the processing of Okazaki fragments that are generated during lagging strand synthesis. The N-terminal domains of BF Pol I and Taq Po |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=107.42 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=72.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-----CEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccC----CC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTG-----KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQ----GG 610 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g-----~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~----~~ 610 (2191)
..+..|++-.+|.|||+.+...+. .+...+ +.+|||+|. ++..+...++.+++.+...++..+.|.. ..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 457899999999999988865554 333322 259999999 8888999999988765456777776655 11
Q ss_pred CCCCCCCceEEEchHHHH-----HHHHHhhhcCCCCccceEEEcccccccc
Q 000107 611 GSLPKDTSVAVCTIEKAN-----SLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 611 ~~l~~~~~IiV~TpEkl~-----~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
.......+++|+|++.+. .....+ . --+.++|||||+|.+.+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l-~---~~~~~~vIvDEaH~~k~ 148 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDL-K---QIKWDRVIVDEAHRLKN 148 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHH-H---TSEEEEEEETTGGGGTT
T ss_pred ccccccceeeecccccccccccccccccc-c---cccceeEEEeccccccc
Confidence 223456899999999976 211111 1 12489999999999954
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=117.08 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=51.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHh
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLL 594 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~ 594 (2191)
+.+++.+++.||||+|||++|+++++..+.. .++++||++||++|+.|.++.+..+.
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999887764 57899999999999999999887766
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-05 Score=105.06 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=88.7
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhc--------CCEEEEEchhHHHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLIST--------GKMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~~--------g~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
.|+.+|.+-+++.+++. +-+-|+|-.-|=|||+...-.+.....++ ....|||+|. .|+--+..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46679999998755554 56889999999999998764333333322 2248999995 7888888888888
Q ss_pred hhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 594 LEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 594 ~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
+.. ++|..|.|...... .-++.+|+|+.++.+-.=+..+.. .+..++|+||-|-|-+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~----~~wNYcVLDEGHVikN~ 1115 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK----IDWNYCVLDEGHVIKNS 1115 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh----cccceEEecCcceecch
Confidence 765 56777777654322 224579999999986433333222 24579999999998753
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=102.28 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=71.0
Q ss_pred hhcCCcEEEEcCCCCHHHHHHHHHHhhcC-Cc-eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCC
Q 000107 840 ETLPSGVAYHHAGLTVEEREVVETCYRKG-LV-RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 840 ~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G-~i-kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
.++.++..-+-|...-.+|..++..|... .| -.|++|-.-.-||||-...+||-++.- +++-.=+|.--||-|.
T Consensus 798 ~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d----FNP~dD~QAEDRcHRv 873 (941)
T KOG0389|consen 798 DTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID----FNPYDDKQAEDRCHRV 873 (941)
T ss_pred HhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC----CCCcccchhHHHHHhh
Confidence 45556667778999999999999999864 34 467899999999999988776543321 1333457889999999
Q ss_pred CCCCceEEEEEeChhhHHH
Q 000107 918 GIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 918 G~d~~Ge~ill~~~~e~~~ 936 (2191)
|..++-.+|.+++..-++.
T Consensus 874 GQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 874 GQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred CCcceeEEEEEEecCcHHH
Confidence 9988999999988765443
|
|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-06 Score=95.39 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=119.0
Q ss_pred ceeccCcccHHHHHHH--HhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccC
Q 000107 1489 INAINASGGFDCFLDR--WEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYG 1566 (2191)
Q Consensus 1489 i~~v~~~~~~~~~l~~--~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~ 1566 (2191)
|.++++++++..++.+ +...+.++||+|....... ...-.+.-+.+|. ++.+|.+.+...... .
T Consensus 1 ~~~i~~~~el~~~~~~~~l~~~~vig~D~Ew~~~~~~--~~~~~v~LiQiat-~~~~~lid~~~~~~~-~---------- 66 (193)
T cd06146 1 IHIVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLG--DSDPRVAILQLAT-EDEVFLLDLLALENL-E---------- 66 (193)
T ss_pred CeEecCHHHHHHHHHHHhhccCCEEEEECccCCCccC--CCCCCceEEEEec-CCCEEEEEchhcccc-c----------
Confidence 4578889999999999 7888899999998632110 0012344456664 345666665321000 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccc
Q 000107 1567 SSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLS 1645 (2191)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1645 (2191)
.......|+++|+++++.||+|++++|+..|++ +|+....+
T Consensus 67 ---------------~~~~~~~L~~ll~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~----------------------- 108 (193)
T cd06146 67 ---------------SEDWDRLLKRLFEDPDVLKLGFGFKQDLKALSASYPALKCMF----------------------- 108 (193)
T ss_pred ---------------hHHHHHHHHHHhCCCCeeEEEechHHHHHHHHHhcCcccccc-----------------------
Confidence 011234688999999999999999999999986 34421100
Q ss_pred cCCCCccchHHHHHHhcCCCCC-------CCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHH
Q 000107 1646 PVHLKDGIDMCIVSWILWPDDE-------RSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRA 1717 (2191)
Q Consensus 1646 ~~~~~~~~Dt~lAawLL~P~~~-------~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~ 1717 (2191)
..+.+++|++.+++.+..... .....+|..++.++++....+. .+.+.|. .++...+..||+.||.+++.
T Consensus 109 -~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~K~-~q~SdW~~rpLs~~Qi~YAA~Da~~l~~ 186 (193)
T cd06146 109 -ERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKS-EQCSNWERRPLREEQILYAALDAYCLLE 186 (193)
T ss_pred -ccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcCcc-cccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 012346999998888764211 0112367777888887665443 3445675 57888889999999999999
Q ss_pred HHHHHH
Q 000107 1718 LCSVLW 1723 (2191)
Q Consensus 1718 L~~~L~ 1723 (2191)
||..|.
T Consensus 187 l~~~L~ 192 (193)
T cd06146 187 VFDKLL 192 (193)
T ss_pred HHHHHh
Confidence 998875
|
The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=102.59 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-----EEEEEchhHHHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-----MALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~-----kaL~I~P~raLA~q~~~~l~~l 593 (2191)
.++|+|.+.... ..+..|+++++.||||+|||++++++++..+...+. +++|.++|.++..+....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999994332 125679999999999999999999999877665444 8999999999988877766654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=102.59 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-----EEEEEchhHHHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-----MALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~-----kaL~I~P~raLA~q~~~~l~~l 593 (2191)
.++|+|.+.... ..+..|+++++.||||+|||++++++++..+...+. +++|.++|.++..+....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999994332 125679999999999999999999999877665444 8999999999988877766654
|
|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-06 Score=81.88 Aligned_cols=57 Identities=32% Similarity=0.428 Sum_probs=52.1
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
-.+|+.|||||..+|++||++||.|++||+.+++++|..+ ++++.+.|.+|+++||+
T Consensus 4 ~~~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i------------~Gig~~~a~~i~~~~~~ 60 (60)
T PF14520_consen 4 FDDLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEI------------PGIGEKTAEKIIEAARE 60 (60)
T ss_dssp HHHHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTS------------TTSSHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcC------------CCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999999999999999999887 67889999999998874
|
... |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=93.47 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=88.3
Q ss_pred CCCCHHHHHhhhhccccc-C----CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 523 SKLYPWQVECLHVDGVLQ-R----RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~-g----knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
-.|-|+|.+-+.. +.. . .--|+.-..|.|||..+.-.+|..+ ++...|+++|+++|. |..+++..... -
T Consensus 183 i~LL~fQkE~l~W--l~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~--~ra~tLVvaP~VAlm-QW~nEI~~~T~-g 256 (791)
T KOG1002|consen 183 IPLLPFQKEGLAW--LTSQEESSVAGGILADEMGMGKTIQTIALLLAEV--DRAPTLVVAPTVALM-QWKNEIERHTS-G 256 (791)
T ss_pred ecchhhhHHHHHH--HHHhhhhhhccceehhhhccchHHHHHHHHHhcc--ccCCeeEEccHHHHH-HHHHHHHHhcc-C
Confidence 3577888888764 221 1 2356788999999999876666543 567799999999984 55566665443 2
Q ss_pred CCeEEEEeccCCCCCC--CCCCceEEEchHHHHHHHHHhhhc-----------CCCCc--cceEEEccccccccc
Q 000107 598 GRHVRSYYGNQGGGSL--PKDTSVAVCTIEKANSLVNRMLEE-----------GRLSE--IGIIVIDELHMVADQ 657 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l--~~~~~IiV~TpEkl~~Ll~~l~~~-----------~~L~~--l~lVVIDEaH~l~d~ 657 (2191)
..+|-.|+|....... -.++|++.+|+..+.+..++--.. ..|.+ +--||+||+|.|-+.
T Consensus 257 slkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 257 SLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred ceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 4678888887644322 246899999999988887751110 11222 457999999999873
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0004 Score=97.23 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCC--CCCCC-C
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG--GGSLP-K 615 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~--~~~l~-~ 615 (2191)
++.-+|.=-||||||+...... +.+. ...+++++|+-++.|-.|..+.|+.+........ -..+.. ...+. .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A-~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLA-RLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDG 349 (962)
T ss_pred CCceEEEeecCCchHHHHHHHH-HHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHhcC
Confidence 4678999999999998765433 2222 2567999999999999999999988754332211 011110 01122 2
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
...|+|+|+.++...+........-..=-+||+||||.-
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 358999999999887754200111122247889999993
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=94.60 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=89.4
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.++||-.|.+- ++.-+..-|.-.-||=|||+++-+|+.-..+ .|+.+.+|...--||.--.+++..++..+|+.|+.
T Consensus 78 g~~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 78 GMRHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred CCChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhc-CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 34444444453 3555667788999999999999998865444 47778888888999999999999999999999987
Q ss_pred EeccCCCCCC--CCCCceEEEchHHH--HHHHHHh---hhcCCCCccceEEEccccccc
Q 000107 604 YYGNQGGGSL--PKDTSVAVCTIEKA--NSLVNRM---LEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 604 ~~G~~~~~~l--~~~~~IiV~TpEkl--~~Ll~~l---~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
...+...... .-.+||..+|-..+ +.|-..+ ........+.+.||||++-|.
T Consensus 155 ~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 155 ILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 6655432111 11478999996654 1111111 133345568899999998664
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=86.75 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=90.7
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ .|++.|.-+.-. +..|+ |+...||=|||+++.++..-..+ .|+.|=+|.....||..=++++..++..+|+
T Consensus 74 ~g~-~p~~vQll~~l~--L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALA--LHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHH--HHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhh--cccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 555 788888877643 54555 89999999999999888766655 5888889999999999999999999999999
Q ss_pred eEEEEeccCCCCC--CCCCCceEEEchHHHHH-HHHHhhhcC----CCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGS--LPKDTSVAVCTIEKANS-LVNRMLEEG----RLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~--l~~~~~IiV~TpEkl~~-Ll~~l~~~~----~L~~l~lVVIDEaH~l~ 655 (2191)
.|....++..... ..-..+|+++|...+.. .++..+... ....+.++||||+|.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9998877543110 00136899999988643 343222211 24678999999999764
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=78.13 Aligned_cols=171 Identities=19% Similarity=0.138 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhc-----ccc---cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVD-----GVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~-----~il---~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
||..+.+. -.|..-|.+++--. ..+ .+.-.++--.||.||--+..-.|+..+++..+++|++...-
T Consensus 28 lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~ 101 (303)
T PF13872_consen 28 LPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSN 101 (303)
T ss_pred CCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECCh
Confidence 67765543 24778888876421 112 35678999999999998887778888887777899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHh-hhcC-------CC--CccceEEEcc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRM-LEEG-------RL--SEIGIIVIDE 650 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l-~~~~-------~L--~~l~lVVIDE 650 (2191)
.|-....+.|+.+... .+.+..+..-.......-...|+++|+-.+..-.... .... |+ +-=++||+||
T Consensus 102 dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDE 180 (303)
T PF13872_consen 102 DLKYDAERDLRDIGAD-NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDE 180 (303)
T ss_pred hhhhHHHHHHHHhCCC-cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEecc
Confidence 9999988888876443 3333332221111111223469999998865543210 0011 11 1126999999
Q ss_pred cccccccchh----HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC
Q 000107 651 LHMVADQNRG----YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM 709 (2191)
Q Consensus 651 aH~l~d~~RG----~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL 709 (2191)
+|.......+ ......+..|... -++.|+|.+|||-
T Consensus 181 cH~akn~~~~~~~~sk~g~avl~LQ~~-----------------------LP~ARvvY~SATg 220 (303)
T PF13872_consen 181 CHKAKNLSSGSKKPSKTGIAVLELQNR-----------------------LPNARVVYASATG 220 (303)
T ss_pred chhcCCCCccCccccHHHHHHHHHHHh-----------------------CCCCcEEEecccc
Confidence 9998764321 2233333333322 2567899999994
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0022 Score=79.73 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCC
Q 000107 1157 YVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTI 1236 (2191)
Q Consensus 1157 y~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~i 1236 (2191)
++-++|+.-+...++.... | +.|...+++.|.++..++..+|-..||......+-.|.+.|..|++..-.+|.+|
T Consensus 79 K~~~Llqa~l~r~~l~~~~--l---~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Ql 153 (314)
T PF02889_consen 79 KAFVLLQAHLSRIPLPDSS--L---RQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQL 153 (314)
T ss_dssp HHHHHHHHHHCT-----HH--H---HHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGS
T ss_pred HHHHHHHHhccCCCcCchh--H---HhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcC
Confidence 4778899999987776421 1 3589999999999999999999999998888889999999999999989999999
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1237 PYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1237 p~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
|+++..-++.|-+.|+.|+.+|++++++++..++..
T Consensus 154 p~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~ 189 (314)
T PF02889_consen 154 PHIGEESLKKLEKRGIKTLQDLRDLSPEELEELLNR 189 (314)
T ss_dssp TT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH-S
T ss_pred CCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHHhh
Confidence 999999999999999999999999999999999753
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=90.24 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcC--CceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCC
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKG--LVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDT 921 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G--~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~ 921 (2191)
.....++|+++..+|..+.+.|.++ ..-++++|.....|+|+-....||.++. +.++....|...||-|.|.+.
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~----~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP----WWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc----ccChHHHHHHHHHHHHhcCcc
Confidence 4588899999999999999999986 4566777789999999998777775433 347788999999999999888
Q ss_pred ceEEEEEeChhh
Q 000107 922 KGESMLICKPEE 933 (2191)
Q Consensus 922 ~Ge~ill~~~~e 933 (2191)
.-.+|.++....
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 888888877654
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=89.48 Aligned_cols=52 Identities=29% Similarity=0.262 Sum_probs=42.1
Q ss_pred CceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceE
Q 000107 869 LVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGE 924 (2191)
Q Consensus 869 ~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge 924 (2191)
.++.|++-++|..|.|-|.+-+|......+ |...-.|.+||.-|.-.|..|+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~----s~~~~~q~~gr~lr~~vnq~G~ 552 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSG----SETSKLQEVGRGLRLPVDENGH 552 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCC----chHHHHHHhccceeccccccCc
Confidence 689999999999999999999887544433 4445689999999988776664
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0065 Score=81.23 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=91.2
Q ss_pred CCCHHHHHhhhhcc--cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 524 KLYPWQVECLHVDG--VLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~--il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
.|+.+|..-+.+.. +.++-|-|+.-.-|-|||..- |.+|.++.+.. +.-|||+||--+.+ +--+|++++. |
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcP--g 690 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCP--G 690 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCC--c
Confidence 56778888876521 225778999999999999775 45555665532 24688899855433 3335666654 7
Q ss_pred CeEEEEeccCCCC-------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHH
Q 000107 599 RHVRSYYGNQGGG-------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLT 668 (2191)
Q Consensus 599 ~~V~~~~G~~~~~-------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~ 668 (2191)
++|..|||..... ..+...+|.|+.+..+..=+... .-.+..++|+||+|.|-++ +...++.+|.
T Consensus 691 lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF----krkrWqyLvLDEaqnIKnf-ksqrWQAlln 762 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF----KRKRWQYLVLDEAQNIKNF-KSQRWQALLN 762 (1958)
T ss_pred ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH----Hhhccceeehhhhhhhcch-hHHHHHHHhc
Confidence 8999999986432 23345788888887654333322 2234689999999999876 5666766653
|
|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00023 Score=81.87 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=49.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
-+|..|||||+.||+.|+++||.|+++|+.|++++|..+ ++++...|.+|++...
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V------------~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFESVEDVRAADQSELAEV------------DGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHc------------cCCCHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999888 5677888999988655
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00062 Score=78.84 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCCHHHHHhhhhccccc-C-CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQ-R-RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~-g-knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
+|++-|.+++.. ++. + +-.++.||.|+|||.+. -.+.+.+...+.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~--~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRA--ILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHH--HHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 478899999986 653 3 46888899999999864 345666666789999999998887775543
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00013 Score=84.30 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=41.5
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEchhHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSI 582 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~P~raL 582 (2191)
+.-.++-|..++.. ++..+.+++.||.|+|||+++....++.+... -.+++|+-|.++.
T Consensus 2 I~p~~~~Q~~~~~a--l~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDA--LLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHH--HHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHH--HHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 34568899999976 77889999999999999999999998887762 2488888888654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00071 Score=80.28 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=46.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CEEEEEchhHH
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG-KMALLVLPYVS 581 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g-~kaL~I~P~ra 581 (2191)
.++.-.+.-|...+.. +.++..+++.||+|+|||+.+....++.+.... .++++.=|...
T Consensus 55 ~~i~p~n~~Q~~~l~a--l~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKA--IESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 4566778889988875 778889999999999999999887777665433 35666667765
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.18 Score=64.69 Aligned_cols=95 Identities=5% Similarity=-0.026 Sum_probs=58.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccc--cccCCCCCceEEeecCCCCCcccCcccccccccccCC-CCCCCc
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL--AAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGR-TGIDTK 922 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstL--a~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR-~G~d~~ 922 (2191)
.+.+|.-.+..+-...-..|..|..+||+-|-=+ =+-..|.+++.||-+..|....+ -.++..|++.... .+....
T Consensus 327 F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~f-Y~El~n~~~~~~~~~~~~~~ 405 (442)
T PF06862_consen 327 FVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQF-YSELLNMLDESSGGEVDAAD 405 (442)
T ss_pred EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhH-HHHHHhhhcccccccccccC
Confidence 4556777888888888999999999999999633 24456777776665554432111 1233444443332 122245
Q ss_pred eEEEEEeChhhHHHHHhhh
Q 000107 923 GESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 923 Ge~ill~~~~e~~~~~~ll 941 (2191)
..|.++++.-+.-.+..++
T Consensus 406 ~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 406 ATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ceEEEEecHhHHHHHHHHh
Confidence 7788888886655544433
|
; GO: 0005634 nucleus |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0022 Score=82.46 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=108.0
Q ss_pred CCCHHHHHhhhhcccc---cCCeEEEEcCCCCchhHHHHHHHHHHHH-h---c-----CCEEEEEchhHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLI-S---T-----GKMALLVLPYVSICAEKAEHLE 591 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il---~gknlIi~APTGSGKTlvael~iL~~ll-~---~-----g~kaL~I~P~raLA~q~~~~l~ 591 (2191)
.+.|+|..++...... .+.--|+...-|-|||+...-.|+..=. + . ..+.|||+|- +|..|...++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 6788999998762122 2456788899999999965544443221 1 1 1258999996 67788888888
Q ss_pred HHhhccCCeEEEEeccCCCC---CCCCCCceEEEchHHHHH----HHHHhhhcCCCCc--cceEEEcccccccccchhHH
Q 000107 592 VLLEPLGRHVRSYYGNQGGG---SLPKDTSVAVCTIEKANS----LVNRMLEEGRLSE--IGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 592 ~l~~~lg~~V~~~~G~~~~~---~l~~~~~IiV~TpEkl~~----Ll~~l~~~~~L~~--l~lVVIDEaH~l~d~~RG~~ 662 (2191)
..+..--++|..|+|..... ..-..+||+|+|+.-+.. -+........+.. ...||+||||.|-+. ...
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~tq 481 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--NTQ 481 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--chh
Confidence 87777678999999976321 122468999999865322 0001001111222 368999999999764 334
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-CC----HHHHHHHhhcccc
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-PN----VAAVADWLQAALY 724 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~N----~~~la~wL~a~l~ 724 (2191)
--..+.+|+-. -.-++|+|. -| +-.+..||++..|
T Consensus 482 ~S~AVC~L~a~---------------------------~RWclTGTPiqNn~~DvysLlrFLr~~pF 521 (901)
T KOG4439|consen 482 CSKAVCKLSAK---------------------------SRWCLTGTPIQNNLWDVYSLLRFLRCPPF 521 (901)
T ss_pred HHHHHHHHhhc---------------------------ceeecccCccccchhHHHHHHHHhcCCCc
Confidence 44555566322 236788883 23 4556677776654
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=81.95 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 516 IYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 516 ~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.+...|+.+|+.-|..|+.. ++++.-.||.+|+|+|||.+..-.+++.+...+.++|+++|....+.+.++.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~--VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~--- 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKH--VLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK--- 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHH--HHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh---
Confidence 34557888999999999987 9999999999999999998887666666666788999999999888888876654
Q ss_pred ccCCeEEEEe
Q 000107 596 PLGRHVRSYY 605 (2191)
Q Consensus 596 ~lg~~V~~~~ 605 (2191)
.|++|..+.
T Consensus 477 -tgLKVvRl~ 485 (935)
T KOG1802|consen 477 -TGLKVVRLC 485 (935)
T ss_pred -cCceEeeee
Confidence 467766543
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0046 Score=82.54 Aligned_cols=128 Identities=21% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHH--HHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL--MLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 527 p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~--iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
+||++++.. .+.++..+|+|+.|+|||++..-. ++...... +.++++++||---|....+.+......++..
T Consensus 148 ~~Qk~A~~~--al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 148 NWQKVAVAL--ALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred HHHHHHHHH--HhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 899999976 788999999999999999875432 22222111 2479999999888887776665433322211
Q ss_pred EEeccCCCCCCCCCCceEEEchHHHHHHHHH---h-hhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNR---M-LEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 603 ~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~---l-~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
. .......+-..|..++...... . ........+++|||||+=|+.- ..+..++..+
T Consensus 224 ---~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al 283 (586)
T TIGR01447 224 ---E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKAL 283 (586)
T ss_pred ---h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhc
Confidence 0 0001111224555554332110 0 0112234589999999999863 2344444443
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0018 Score=86.09 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=62.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcC---CceEEEecccccccCCCCCc-eEEe-ecCCCCCcccCcccccccccccCCCCCC
Q 000107 846 VAYHHAGLTVEEREVVETCYRKG---LVRVLTATSTLAAGVNLPAR-RVIF-RQPRIGRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G---~ikVLVATstLa~GVNLPav-~VVI-~~p~~g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
-..+-|....++|-..++.|..- ....|.+|.....|+|+... +||| +.+. .+....|+--||-|-|..
T Consensus 753 YlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw------np~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 753 YLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW------NPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred eeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC------CchhHHHHHHHHHHhhch
Confidence 44567888889999999999853 35778899999999999864 4444 3333 567788999999999977
Q ss_pred CceEEEEEeChh
Q 000107 921 TKGESMLICKPE 932 (2191)
Q Consensus 921 ~~Ge~ill~~~~ 932 (2191)
..-.++.+++-.
T Consensus 827 ~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 827 KEVRVLRLITVN 838 (1157)
T ss_pred hheeeeeeehhh
Confidence 777777777654
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0056 Score=81.99 Aligned_cols=118 Identities=23% Similarity=0.230 Sum_probs=71.2
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh----cCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS----TGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~----~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
..+||++|+.. .+.++-.+|.|++|+|||++..- ++..+.. ...++++++||.--|....+.+......++..
T Consensus 153 ~~d~Qk~Av~~--a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAV--ALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHH--HhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 35899999976 67889999999999999987532 2222222 23478888999988888877765544333211
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHHHHHHH----hhhcCCCCccceEEEccccccc
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR----MLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~----l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
. ........-..|..++....-. .......-.+++|||||+-|+.
T Consensus 230 -----~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd 278 (615)
T PRK10875 230 -----D-----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD 278 (615)
T ss_pred -----h-----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc
Confidence 0 0001111123455554332100 0011223356999999999975
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=81.06 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=49.0
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC--CEEEEEchhHHHHHHH
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG--KMALLVLPYVSICAEK 586 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g--~kaL~I~P~raLA~q~ 586 (2191)
.++ .+++.|.+|+.. +..++.+++.|+.|+|||++.- .+++.+...+ ..+++++||-..|..+
T Consensus 320 ~~~-~l~~~Q~~Ai~~--~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 320 LRK-GLSEEQKQALDT--AIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred cCC-CCCHHHHHHHHH--HHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHH
Confidence 454 799999999986 7788899999999999998763 4444444445 6788899997777643
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0047 Score=78.17 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=62.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHH--HhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRL--ISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~l--l~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
+.+||.|..|||||+++.- ++..+ ...+.+++++++...|.......+..... ......
T Consensus 2 ~v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------~~~~~~ 62 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------PKLKKS 62 (352)
T ss_pred eEEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc------------------cchhhh
Confidence 4689999999999999854 44555 45688999999999998877766654320 001122
Q ss_pred EEEchHHHHHHHHHh-hhcCCCCccceEEEcccccccc
Q 000107 620 AVCTIEKANSLVNRM-LEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l-~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
.+..+..+ ++.. ........+++|||||+|.+.+
T Consensus 63 ~~~~~~~~---i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 63 DFRKPTSF---INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhHHH---HhhcccccccCCcCCEEEEehhHhhhh
Confidence 33333332 2221 1234567899999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF14229 DUF4332: Domain of unknown function (DUF4332) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0028 Score=67.76 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=50.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhh--hhHHHHHHHHHHHHHH
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRR--VQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~--~~~~~A~~I~~~A~~l 1299 (2191)
+.+||+||||+...|..|..|||.|+.+||.++|.+|...+..-.. .....+. .....++.-|++|+.|
T Consensus 52 ~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l~~~n~-~~~~~r~~~p~~~~v~~WI~~Ak~l 122 (122)
T PF14229_consen 52 QADLMRIPGIGPQYAELLEHAGVDTVEELAQRNPQNLHQKLGRLNR-KLKLRRQLCPSLEEVQEWIEQAKQL 122 (122)
T ss_pred HHHhhhcCCCCHHHHHHHHHhCcCcHHHHHhCCHHHHHHHHHHHHH-HhcCCcCCCCCHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999988742100 0001111 2345566777777653
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.023 Score=71.56 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=97.2
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCC-CCch--hHHHHHHHHHHHHh------------------------------
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCAST-SAGK--SFVAEILMLRRLIS------------------------------ 568 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APT-GSGK--Tlvael~iL~~ll~------------------------------ 568 (2191)
-..+++.|.+.+.. ..+-+++++---| +.|+ +-+|.+-+|+++++
T Consensus 214 s~pltalQ~~L~~~--m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 214 SEPLTALQKELFKI--MFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cCcchHHHHHHHHH--HHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 35789999999875 5667888764333 2344 56777888888762
Q ss_pred cCCEEEEEchhHHHHHHHHHHHHHHhhccCC---------eEEEEeccCCCCC-----CC--------------------
Q 000107 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGR---------HVRSYYGNQGGGS-----LP-------------------- 614 (2191)
Q Consensus 569 ~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~---------~V~~~~G~~~~~~-----l~-------------------- 614 (2191)
..+++|||+|+|+-|-.+...|..++..... +...-|++..... .+
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 1358999999999999999999887543221 1111122110100 00
Q ss_pred ------------CCCceEEEchHHHHHHHHH----hhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcC
Q 000107 615 ------------KDTSVAVCTIEKANSLVNR----MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGE 676 (2191)
Q Consensus 615 ------------~~~~IiV~TpEkl~~Ll~~----l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~ 676 (2191)
-..||+||.|=-+..++.. ......|+.|.++|||-+|.+.- ..+|.++..+-++..+
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~----QNwEhl~~ifdHLn~~ 445 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM----QNWEHLLHIFDHLNLQ 445 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH----hhHHHHHHHHHHhhcC
Confidence 1368999999887777752 11233588999999999999753 4567766666655443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=62.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=16.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~ 564 (2191)
+++.+++.||+|+|||.+....+-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999987655443
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0027 Score=84.64 Aligned_cols=220 Identities=18% Similarity=0.163 Sum_probs=150.5
Q ss_pred HHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhh----cCCc-----HHHHHHHHHHHHHHH
Q 000107 1779 AYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRH----EHPI-----VPVIKEHRTLAKLLN 1849 (2191)
Q Consensus 1779 i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~----~hpi-----~~~ile~R~l~Klls 1849 (2191)
+..+.-..||..++-.++.+||..|+.-.+. -+|+...+ --|+ ....+.|+.+...|+
T Consensus 715 ~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~-------------~vle~~lh~lylvtP~~~~~~~~dwli~f~i~~~L~ 781 (1008)
T KOG0950|consen 715 ITRLGRACFNAGSDPEVANILFADLKKSLPQ-------------LVLESSLHLLYLVTPYLEVMNDIDWLIYFQIYHTLP 781 (1008)
T ss_pred hhhhhhhhhcccCChhhhHHHHHHHHHhhhc-------------cccccccceeeeecchHhhcccccHHHHHHHHhcCC
Confidence 5556666899999999999999988764321 12222221 1233 334556666655555
Q ss_pred hHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccccC
Q 000107 1850 CTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQ 1929 (2191)
Q Consensus 1850 ty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~ 1929 (2191)
+-...+ .+ .-|++|..+- - .+.| -+.+|+||+|....| +...++.-|+...
T Consensus 782 ~~~~~~---~~-----~~G~~e~fi~-~-~~~g---qs~~~~~~~~~~~r~----------------y~~l~L~~li~es 832 (1008)
T KOG0950|consen 782 SPEQKL---AK-----LLGVIESFIE-K-CVSG---QSVRNLQNVQKRKRL----------------YVALALQKLINES 832 (1008)
T ss_pred cHHHHH---Hh-----hhchHHHHHH-H-hhhc---cccccccchhHHHHH----------------HHHHHHHHHHhhC
Confidence 433333 22 1366665432 1 2223 466899999852111 2235677777653
Q ss_pred CCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhh
Q 000107 1930 ENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSE 2009 (2191)
Q Consensus 1930 ~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~ 2009 (2191)
+ -..|..+|.+.+.||.||++++..+..+.. .|+. --.|+ + +..-+.-+|+.+|+||.+.|..
T Consensus 833 p-i~~V~~kYk~~rg~lqall~~a~~~a~~It-----~Fce-~l~w~--~--------~~~l~~~~~~rl~~g~~~eL~~ 895 (1008)
T KOG0950|consen 833 P-IRTVAEKYKVERGRLQALLSNASSFASLIT-----FFCE-SIQWF--P--------LRALLSEFYGRLSFGGHAELIP 895 (1008)
T ss_pred c-HHHHHHHhCchHHHHHHHHhcchhHHHHHH-----HHHH-Hhhhc--c--------hHHHHHHHHHHHhccchhhhhh
Confidence 3 368899999999999999999988766553 2222 23465 2 6667889999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCee
Q 000107 2010 QLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKR 2057 (2191)
Q Consensus 2010 ~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr 2057 (2191)
-+.++-..++....-|++.|+++..+...+.....+.=+..+.++++.
T Consensus 896 Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~~si~~~~a~ 943 (1008)
T KOG0950|consen 896 LMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELPISISMKQAT 943 (1008)
T ss_pred hhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhhccccHHHhh
Confidence 999999999999999999999999998888777766555555555544
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.037 Score=76.41 Aligned_cols=100 Identities=19% Similarity=0.102 Sum_probs=66.9
Q ss_pred CCCHHHHHhhhhccccc-CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 524 KLYPWQVECLHVDGVLQ-RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~-gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
.|++.|.+|+.. ++. ++.+++.|++|+|||++.- ++...+...|.++++++||--.|.... . ..|+.
T Consensus 352 ~Ls~~Q~~Av~~--i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~---~~g~~-- 419 (744)
T TIGR02768 352 RLSEEQYEAVRH--VTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAAGYRVIGAALSGKAAEGLQ----A---ESGIE-- 419 (744)
T ss_pred CCCHHHHHHHHH--HhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhCCCeEEEEeCcHHHHHHHH----h---ccCCc--
Confidence 689999999986 665 5789999999999998754 344445556889999999966554432 1 11221
Q ss_pred EEeccCCCCCCCCCCceEEEchHHHHHHHHHhh-hcCCCCccceEEEcccccccc
Q 000107 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRML-EEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 603 ~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~-~~~~L~~l~lVVIDEaH~l~d 656 (2191)
-.|..++ +..+. ....+...++|||||+-|+..
T Consensus 420 ------------------a~Ti~~~---~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 420 ------------------SRTLASL---EYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ------------------eeeHHHH---HhhhccCcccCCCCcEEEEECcccCCH
Confidence 1244443 11111 223466789999999999864
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0095 Score=58.35 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l 590 (2191)
+.-++|.||+|||||.+..-.+...+.. .+.+++++.|++..+.++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5556679999999997765544443321 2779999999999999988776
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=66.84 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=86.5
Q ss_pred cCCCCCCHHHHHhhhhcccc---cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEE-EEEchhHHHHHHHHHHHHHHhh
Q 000107 520 RGISKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMA-LLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il---~gknlIi~APTGSGKTlvael~iL~~ll~~g~ka-L~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.+| -+++.|.+.... +. .|+|.+...-+|.|||.|. +||+-.++.+|.+. .+++| ++|..|..+.+...++
T Consensus 20 ~~i-liR~~Q~~ia~~--mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 20 SNI-LIRPVQVEIARE--MISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLG 94 (229)
T ss_pred cCc-eeeHHHHHHHHH--HhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 344 689999998764 33 4789999999999999985 67777777776654 45555 5899999998876665
Q ss_pred c-cCCeEEEEeccCCCCC--------------CCCCCceEEEchHHHHHHHHHhhhc----------------CCCCccc
Q 000107 596 P-LGRHVRSYYGNQGGGS--------------LPKDTSVAVCTIEKANSLVNRMLEE----------------GRLSEIG 644 (2191)
Q Consensus 596 ~-lg~~V~~~~G~~~~~~--------------l~~~~~IiV~TpEkl~~Ll~~l~~~----------------~~L~~l~ 644 (2191)
. ++.+|..+-=++.... ......|+++|||.+.++--..++. .++++..
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~ 174 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHS 174 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 4 4555543322221110 1123569999999987763221110 1234456
Q ss_pred eEEEcccccccc
Q 000107 645 IIVIDELHMVAD 656 (2191)
Q Consensus 645 lVVIDEaH~l~d 656 (2191)
.=|+||.|.+..
T Consensus 175 rdilDEsDe~L~ 186 (229)
T PF12340_consen 175 RDILDESDEILS 186 (229)
T ss_pred CeEeECchhccC
Confidence 678888888654
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.043 Score=76.80 Aligned_cols=104 Identities=21% Similarity=0.080 Sum_probs=68.2
Q ss_pred HcCCCCCCHHHHHhhhhccccc-CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 519 KRGISKLYPWQVECLHVDGVLQ-RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~-gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
..|+ .|++-|.+++.. ++. +..+++.|+.|+|||++. -++.+.+...|.+++.++||-..|.... . ..
T Consensus 342 ~~g~-~Ls~eQr~Av~~--il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e---~t 410 (988)
T PRK13889 342 ARGL-VLSGEQADALAH--VTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLE----G---GS 410 (988)
T ss_pred hcCC-CCCHHHHHHHHH--HhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHh----h---cc
Confidence 3565 699999999986 666 456899999999999873 3444445556889999999965553322 1 11
Q ss_pred CCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhh-hcCCCCccceEEEcccccccc
Q 000107 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRML-EEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~-~~~~L~~l~lVVIDEaH~l~d 656 (2191)
|+. -.|..++ +..+. ....+...++|||||+-|++.
T Consensus 411 Gi~--------------------a~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 411 GIA--------------------SRTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred Ccc--------------------hhhHHHH---HhhhcccccccccCcEEEEECcccCCH
Confidence 211 1244443 22221 223466778999999999864
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=69.51 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=49.5
Q ss_pred CCCHHHHHhhhhcccccCCe-EEEEcCCCCchhHHHHHHHHHHH--------HhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQRRN-LVYCASTSAGKSFVAEILMLRRL--------ISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gkn-lIi~APTGSGKTlvael~iL~~l--------l~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
+|++-|.+|+.. ++.... .+|.||+|+|||.+..- ++..+ ...++++|+++|+...+....+.+.+
T Consensus 1 ~ln~~Q~~Ai~~--~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQS--ALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHH--HCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHH--HHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999986 777777 99999999999965543 33333 45788999999999999999988766
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=72.83 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=74.5
Q ss_pred CCCHHHHHhhhhccc------ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH--HHHHHHHhh
Q 000107 524 KLYPWQVECLHVDGV------LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK--AEHLEVLLE 595 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~i------l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~--~~~l~~l~~ 595 (2191)
+|++-|.+++.. + .++.++++.||-|+|||++.-. +...+...++.+++++||-..|.-+ -..+..++
T Consensus 1 ~Ln~eQ~~~~~~--v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f- 76 (364)
T PF05970_consen 1 KLNEEQRRVFDT--VIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFF- 76 (364)
T ss_pred CCCHHHHHHHHH--HHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhccccceEEEecchHHHHHhccCCcchHHhc-
Confidence 367788888765 5 6789999999999999988643 3344444677899999997666554 12222221
Q ss_pred ccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 596 PLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
++.+. . . . .-.+.+++... ....+..+++|||||+=|+. ...++.+=.+|+.+.
T Consensus 77 --~i~~~----~-----~--~--~~~~~~~~~~~------~~~~l~~~~~lIiDEism~~----~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 77 --GIPIN----N-----N--E--KSQCKISKNSR------LRERLRKADVLIIDEISMVS----ADMLDAIDRRLRDIR 130 (364)
T ss_pred --Ccccc----c-----c--c--cccccccccch------hhhhhhhheeeecccccchh----HHHHHHHHHhhhhhh
Confidence 11110 0 0 0 00112222111 12357788999999999975 445666666666654
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=65.03 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=55.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHH---hcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLI---STGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll---~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~ 614 (2191)
.++.+++.||||+|||+++.-.+..... ..+.++.++. ++|.-+.++.. .+...+|+.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~---~~a~~lgvpv~~----------- 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQ---TYGDIMGIPVKA----------- 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHH---HHhhcCCcceEe-----------
Confidence 3578999999999999887644433222 1355665554 77777776644 334434554421
Q ss_pred CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 615 KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 615 ~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+-++..+...+.+ +.+.++||||++....
T Consensus 239 ------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 239 ------IESFKDLKEEITQ------SKDFDLVLVDTIGKSP 267 (388)
T ss_pred ------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCc
Confidence 1134444433332 4578999999998864
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.015 Score=65.69 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=70.2
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++.+|||++|....+.+...+...... .++..+.. ...+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~--------------------------------------~~~~v~~q--~~~~ 47 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE--------------------------------------KGIPVFVQ--GSKS 47 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E---------------------------------------ETSCEEES--TCCH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc--------------------------------------ccceeeec--Ccch
Confidence 3589999999999877766555321100 00111222 2457
Q ss_pred HHHHHHHhhcCCceEEEecc--cccccCCCCC--c-eEEe-ecCCCCCc-cc-----------------------Ccccc
Q 000107 858 REVVETCYRKGLVRVLTATS--TLAAGVNLPA--R-RVIF-RQPRIGRD-FI-----------------------DGTRY 907 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATs--tLa~GVNLPa--v-~VVI-~~p~~g~~-~i-----------------------s~~~y 907 (2191)
+..+.+.|+.+.-.||+|+. .+..|||+|+ . .||| ..|.+... ++ -....
T Consensus 48 ~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 127 (167)
T PF13307_consen 48 RDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKL 127 (167)
T ss_dssp HHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHH
Confidence 78889999999999999998 9999999996 3 2343 34543221 10 00134
Q ss_pred cccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCC
Q 000107 908 RQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESC 945 (2191)
Q Consensus 908 ~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l 945 (2191)
.|.+||+-|... ..|..+++-..-....+.+.+-..+
T Consensus 128 ~Qa~GR~iR~~~-D~g~i~llD~R~~~~~y~~~l~~~l 164 (167)
T PF13307_consen 128 KQAIGRLIRSED-DYGVIILLDSRFLSKRYGKYLPKWL 164 (167)
T ss_dssp HHHHHCC--STT--EEEEEEESGGGGGHHHHHH-T---
T ss_pred hhhcCcceeccC-CcEEEEEEcCccccchhhhcCcccc
Confidence 899999999874 4777666655433344444444433
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.17 Score=60.54 Aligned_cols=129 Identities=21% Similarity=0.250 Sum_probs=73.1
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc---hhHHHHHHHHHHHHHHhhccCCeEEE-EeccCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL---PYVSICAEKAEHLEVLLEPLGRHVRS-YYGNQGG-- 610 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~---P~raLA~q~~~~l~~l~~~lg~~V~~-~~G~~~~-- 610 (2191)
++..|.-++|+|+||+|||..+...+++.+...+.+++|+. |...++..... .. .++.... ..+....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~----~~--~~~~~~~~~~~~~~~~~ 82 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLA----SE--SGISLSKLRTGSLSDED 82 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHH----Hh--cCCCHHHHhcCCCCHHH
Confidence 57788999999999999998887777666655588899887 33333332211 10 1111000 0000000
Q ss_pred --------CCCCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEcccccccccc----hhHHHHHHHHHHHHh
Q 000107 611 --------GSLPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN----RGYLLELLLTKLRYA 673 (2191)
Q Consensus 611 --------~~l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~----RG~~lE~lL~kLr~~ 673 (2191)
..+ ....+.| .|++.+...++.+... .++++||||=++.+.... +...+..++..|+.+
T Consensus 83 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~l 158 (242)
T cd00984 83 WERLAEAIGEL-KELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLL 158 (242)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 000 0112333 2555555555544322 278999999999875432 344567778888776
Q ss_pred hc
Q 000107 674 AG 675 (2191)
Q Consensus 674 ~~ 675 (2191)
+.
T Consensus 159 a~ 160 (242)
T cd00984 159 AK 160 (242)
T ss_pred HH
Confidence 54
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.063 Score=65.35 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=71.8
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCC----
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGG---- 610 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~---- 610 (2191)
.++..|..+++.||||+|||..+...+.......|.+++|+.-- .-..+...++........+..... ......
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDA 103 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHH
Confidence 35778999999999999999887766655444447888888631 223344444433322222111000 000000
Q ss_pred --CCCCCCCceEE------EchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-----hhHHHHHHHHHHHHhhc
Q 000107 611 --GSLPKDTSVAV------CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN-----RGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 611 --~~l~~~~~IiV------~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~-----RG~~lE~lL~kLr~~~~ 675 (2191)
..+.....+.+ .|++.+...++.+.. -..+++||||.++.+.... ....+..++..|+.++.
T Consensus 104 ~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~ 178 (271)
T cd01122 104 AFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV---SHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFAT 178 (271)
T ss_pred HHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh---cCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 00101111221 145555555544322 2367899999999886532 22335566666766653
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.093 Score=66.37 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=52.2
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTG-KMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g-~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
..+..+++.||||+|||+.+...+.+.+...| .++.++. ++|.-+.+....+. ..+|+.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a---~~~gv~~~~------------ 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFG---KILGVPVHA------------ 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHH---HHcCCceEe------------
Confidence 35789999999999999988765555444444 4554443 33444554444433 334444322
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
+-+++.+...+.+ +.+.++|+||.+=+
T Consensus 200 -----~~~~~~l~~~l~~------l~~~DlVLIDTaG~ 226 (374)
T PRK14722 200 -----VKDGGDLQLALAE------LRNKHMVLIDTIGM 226 (374)
T ss_pred -----cCCcccHHHHHHH------hcCCCEEEEcCCCC
Confidence 2233333333332 44569999999965
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.14 Score=72.27 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCHHHHHhhhhcccc-cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 524 KLYPWQVECLHVDGVL-QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il-~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
.|++-|.+++.. +. .++-.++.|+.|+|||++.- ++.+.+...|.+++.++|+-.-|.... + ..|+..
T Consensus 381 ~Ls~eQ~~Av~~--i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~~G~~V~g~ApTgkAA~~L~----e---~~Gi~a- 449 (1102)
T PRK13826 381 RLSDEQKTAIEH--VAGPARIAAVVGRAGAGKTTMMK-AAREAWEAAGYRVVGGALAGKAAEGLE----K---EAGIQS- 449 (1102)
T ss_pred CCCHHHHHHHHH--HhccCCeEEEEeCCCCCHHHHHH-HHHHHHHHcCCeEEEEcCcHHHHHHHH----H---hhCCCe-
Confidence 799999999985 43 47889999999999998754 344555567889999999966554432 1 122221
Q ss_pred EEeccCCCCCCCCCCceEEEchHHHHHHHHHh-hhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRM-LEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 603 ~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l-~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
.|..+| +..+ .....+..-++|||||+.|++. ..+..++..+
T Consensus 450 -------------------~TIas~---ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~ 492 (1102)
T PRK13826 450 -------------------RTLSSW---ELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEAV 492 (1102)
T ss_pred -------------------eeHHHH---HhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHHH
Confidence 233332 1111 1223456678999999999863 3455555444
|
|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.014 Score=52.64 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=22.8
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
.+++|-|||+.+||++|+.||+|++||.+
T Consensus 3 ~f~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 3 LFTGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HHHTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred chhhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 46899999999999999999999999954
|
There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A .... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.077 Score=56.16 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA 583 (2191)
+.++++.||+|+|||..+...+ ..+...+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCCCCCEEEECCEEccc
Confidence 5789999999999999875443 33332233577777664443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.041 Score=67.84 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=53.4
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
|++-|.+++.. ..++++|.|..|||||.+...-++..+... ..++|++++|++.|.++..++...+..
T Consensus 1 l~~eQ~~~i~~----~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS----TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS-----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57789998853 678999999999999999877666655543 358999999999999999999887654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.029 Score=69.97 Aligned_cols=58 Identities=34% Similarity=0.328 Sum_probs=49.0
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
++|.++|||++.+|..|.++||.|++||+.+++++|.+++ +++...|..|++.|+..+
T Consensus 6 ~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~------------g~~~~~a~~l~~~a~~~~ 63 (317)
T PRK04301 6 KDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAA------------GIGESTAAKIIEAAREAA 63 (317)
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhc------------CCCHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999999999885 344456777777666543
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.22 Score=66.13 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHH-HHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC--e
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILML-RRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR--H 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL-~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~--~ 600 (2191)
.|.|||.+.+.. +..++-.++..+=..|||.++...++ ..+...+..+++++|+..-|..+++.++.+...+.. +
T Consensus 59 ~L~p~Q~~i~~~--~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 59 QMRDYQKDMLKI--MHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred CCcHHHHHHHHH--HhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 588999999875 54566667888999999988875444 344456779999999999999999888876554321 1
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..........-.+..+..|.+.|... ....=..+.++|+||+|.+.+
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~---------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP---------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC---------CccCCCCCceEEEeccccCCC
Confidence 11000111111123455565555321 001112457899999999765
|
|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.033 Score=56.12 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=41.1
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+..+-+|..||+||.+-|+-|..-||.|+++|+..+|.+|-..+
T Consensus 8 ~~~~~~L~~iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~l 51 (93)
T PF11731_consen 8 RAGLSDLTDIPNIGKATAEDLRLLGIRSPADLKGRDPEELYERL 51 (93)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999876
|
Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed. |
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=60.11 Aligned_cols=145 Identities=22% Similarity=0.284 Sum_probs=85.6
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEe-ccCCCC----
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYY-GNQGGG---- 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~-G~~~~~---- 611 (2191)
++..|.-+++.|+||.|||..+.-.+.+.....+..++|+..-- -..+++.++-.... ++....+. |.....
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm-~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM-SEEELAARLLARLS--GVPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHH
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC-CHHHHHHHHHHHhh--cchhhhhhccccCHHHHHH
Confidence 56778899999999999999988777766665568888886421 11222222211111 11000000 000000
Q ss_pred ------CCCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcC
Q 000107 612 ------SLPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGE 676 (2191)
Q Consensus 612 ------~l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~ 676 (2191)
.+. +..++| .|++.+...++++.... ..+++||||=+|.|... .+...+..+...|+.++.+
T Consensus 92 ~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~ 168 (259)
T PF03796_consen 92 LQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKE 168 (259)
T ss_dssp HHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 111222 25667777777654433 77899999999999763 4566788888889888753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 677 GTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 677 ~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.||++|-.
T Consensus 169 ---------------------~~i~vi~~sQl 179 (259)
T PF03796_consen 169 ---------------------LNIPVIALSQL 179 (259)
T ss_dssp ---------------------HTSEEEEEEEB
T ss_pred ---------------------cCCeEEEcccc
Confidence 56788888776
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.43 Score=60.22 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=83.8
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHH-HhcCCE-EEEEc-hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRL-ISTGKM-ALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~l-l~~g~k-aL~I~-P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.+++.+.+.||||.|||+...-...+.. ....++ +|+.. -+|.=|.++.+.+.++ +|+.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~i---m~vp~-------------- 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADI---MGVPL-------------- 263 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHH---hCCce--------------
Confidence 4589999999999999987665444444 333334 44444 6777777776555444 34443
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~ 695 (2191)
.++-+|.-+...+. .+.+.++|.||=+-+ ++.=...+..|+.....
T Consensus 264 ---~vv~~~~el~~ai~------~l~~~d~ILVDTaGr------s~~D~~~i~el~~~~~~------------------- 309 (407)
T COG1419 264 ---EVVYSPKELAEAIE------ALRDCDVILVDTAGR------SQYDKEKIEELKELIDV------------------- 309 (407)
T ss_pred ---EEecCHHHHHHHHH------HhhcCCEEEEeCCCC------CccCHHHHHHHHHHHhc-------------------
Confidence 34556666655444 356679999998754 32223334444433221
Q ss_pred CCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEE
Q 000107 696 PAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIK 738 (2191)
Q Consensus 696 ~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~ 738 (2191)
...---.+.+|||. ..+++.+-+. .|+.+|+...|.
T Consensus 310 ~~~i~~~Lvlsat~-K~~dlkei~~------~f~~~~i~~~I~ 345 (407)
T COG1419 310 SHSIEVYLVLSATT-KYEDLKEIIK------QFSLFPIDGLIF 345 (407)
T ss_pred cccceEEEEEecCc-chHHHHHHHH------HhccCCcceeEE
Confidence 01123457789995 5556555443 567777776554
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.05 Score=62.88 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
|.-.++.||+|+|||+.+.-.+. ++...+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~-~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAY-NYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHH-HHHHcCCeEEEEec
Confidence 45678999999999988765544 44456888888866
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=60.38 Aligned_cols=121 Identities=14% Similarity=0.192 Sum_probs=66.1
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++..|.-++|.|++|+|||+.+...+...+ ..|.+++|+.---. ..++.+++..+ |+....+. .
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes-~~~i~~R~~s~----g~d~~~~~---------~ 123 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYT-EQDVRDRLRAL----GADRAQFA---------D 123 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC-HHHHHHHHHHc----CCChHHhc---------c
Confidence 3577889999999999999999877766554 45888888863322 35555555443 32211000 0
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
...+....+.....+++++... ...++||||=+..+....+.+.+..++..|+.+.
T Consensus 124 ~~~~d~~d~~~~~~ii~~l~~~---~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~A 179 (237)
T PRK05973 124 LFEFDTSDAICADYIIARLASA---PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFA 179 (237)
T ss_pred ceEeecCCCCCHHHHHHHHHHh---hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHH
Confidence 0000000001112234443331 2458999999998753323333444444455544
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.061 Score=72.98 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=54.2
Q ss_pred CCCCHHHHHhhhhccccc-CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGVLQ-RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~-gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
..|++.|.+|+.. ++. ...++|.||+|+|||.+.. .++..+...|.++|+++|+...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~--~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSF--ALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHH--HhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999976 554 4789999999999997764 34445556788999999999999998877754
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=55.60 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
++.+++.||+|+|||..+.. +.+.+...+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhcCCCCeEEEehh
Confidence 68999999999999977644 334443445566666543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.29 Score=56.89 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=36.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
+.+++.||||+|||+...-...+...+ ++++.+++ .+|.=|.++.+.+.+. +|+.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~---l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEI---LGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHH---HTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHH---hcccc
Confidence 467899999999998877555554444 66665555 6777777766555443 45554
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.34 Score=64.45 Aligned_cols=120 Identities=11% Similarity=0.122 Sum_probs=76.2
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC--------eEEEEeccCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR--------HVRSYYGNQG 609 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~--------~V~~~~G~~~ 609 (2191)
.+..+-.++.+|=|.|||.+..+.+...+...|.+++|++|...-+.+.+++++..+..++. ++....|+..
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E 263 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDE 263 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCee
Confidence 34567788899999999998887766544436889999999999999999999888875441 1121222211
Q ss_pred CCC--CC-----CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 610 GGS--LP-----KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 610 ~~~--l~-----~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
.-. .+ ....|.+++-.. ...+-..++++||||++.|.+ ..++.++-.+
T Consensus 264 ~I~f~~p~gak~G~sti~F~Ars~---------~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l 318 (752)
T PHA03333 264 NLEYISDPAAKEGKTTAHFLASSP---------NAARGQNPDLVIVDEAAFVNP----GALLSVLPLM 318 (752)
T ss_pred EEEEecCcccccCcceeEEecccC---------CCcCCCCCCEEEEECcccCCH----HHHHHHHHHH
Confidence 000 00 113444544331 112223579999999999865 3455555444
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.6 Score=60.61 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=53.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHH-HhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRL-ISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~l-l~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.++.+++.+|||+|||+.....+.... ...+.++.+|. |+|.-+.+....+.. .+|+.+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~---~~~vp~~-------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAK---IMGIPVE-------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHH---HhCCceE--------------
Confidence 467899999999999988765554443 34556666554 666655544444333 2343321
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.+.+++.+...+.. +.+.++||||.+-+.
T Consensus 283 ---~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 283 ---VVYDPKELAKALEQ------LRDCDVILIDTAGRS 311 (424)
T ss_pred ---ccCCHHhHHHHHHH------hCCCCEEEEeCCCCC
Confidence 12344444444433 346799999998664
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.17 Score=61.21 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=29.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
+..+.|++++||+|+|||..+.- +...+...|.+++|+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a-l~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG-LGIRACQAGHRVLFATA 134 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH-HHHHHHHCCCchhhhhH
Confidence 44678999999999999988754 33445556777776543
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.067 Score=66.57 Aligned_cols=55 Identities=38% Similarity=0.338 Sum_probs=44.6
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
|.+||||++.+|+.|+++||.|++||+.+++++|.+++. +....|..|++.|++.
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g------------~~~~~a~~l~~~~~~~ 55 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAG------------ISEGTAAKIIQAARKA 55 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccC------------CCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999998852 3344566666655543
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.09 Score=46.93 Aligned_cols=48 Identities=25% Similarity=0.276 Sum_probs=39.4
Q ss_pred CHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1240 KGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1240 ~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
...-|-.|+++||.|+++||.+++++|..+ .++....|..|+..||+.
T Consensus 2 ~~~~~~~L~~~G~~s~e~la~~~~~eL~~i------------~g~~~e~a~~ii~~a~~~ 49 (50)
T TIGR01954 2 DEEIAQLLVEEGFTTVEDLAYVPIDELLSI------------EGFDEETAKELINRARNA 49 (50)
T ss_pred CHHHHHHHHHcCCCCHHHHHccCHHHHhcC------------CCCCHHHHHHHHHHHHHh
Confidence 456688999999999999999999999987 345666778888877753
|
NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic. |
| >cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.075 Score=65.95 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=35.2
Q ss_pred cCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCC
Q 000107 1225 GVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEAS 1262 (2191)
Q Consensus 1225 Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~ 1262 (2191)
-+.+.|++|++|||||..+|++||+.|++|++||..+-
T Consensus 79 ~~~~~l~~l~~i~GiGpk~a~~l~~lGi~sl~dL~~a~ 116 (307)
T cd00141 79 DVPPGLLLLLRVPGVGPKTARKLYELGIRTLEDLRKAA 116 (307)
T ss_pred cchHHHHHHHcCCCCCHHHHHHHHHcCCCCHHHHHHHh
Confidence 37789999999999999999999999999999998864
|
X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this |
| >PRK14973 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.11 Score=72.58 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHH
Q 000107 1168 ETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARAL 1247 (2191)
Q Consensus 1168 e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~L 1247 (2191)
..+..+++..-|++..+++.++..| |+.|+...-.... ..|...|-++ |+.|+|||....-.|
T Consensus 831 ~a~p~~La~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~e----l~~vkg~ge~t~~~l 893 (936)
T PRK14973 831 SVHPAYLALKTGISPETICRHAKLV----------CEKLGRPVPEKIS---KAAFERGRAE----LLSVPGLGETTLEKL 893 (936)
T ss_pred hcCHHHHhcCCCCChhhHHHHHHHH----------HHHhcCCCchhhh---hhhhcccchh----hhhccCCCHHHHHHH
Confidence 3455688889999999988887655 4455543333222 6666666666 999999999999999
Q ss_pred HHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1248 YKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1248 y~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
+.|||.|++||+++++++|... .+++.+.++++.+.|+..+
T Consensus 894 ~~ag~~~~e~l~~~d~~~la~~------------~~i~~k~~~~~~~~~~~~~ 934 (936)
T PRK14973 894 YLAGVYDGDLLVSADPKKLAKV------------TGIDEKKLRNLQAYAKKVL 934 (936)
T ss_pred HHcCCCCHHHhccCCHHHHhhh------------cCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999886 4688889999999888765
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.5 Score=57.62 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=29.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+..++|++++||+|+|||..+. ++...+...|.+++|+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA-AIGLALIENGWRVLFTR 141 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH-HHHHHHHHcCCceeeee
Confidence 3468899999999999997764 44445555677777764
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.4 Score=57.42 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=41.2
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
.++..|..+++.||+|+|||+.+...+...+ .+|.+++|+. +.+-..+..+++..
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 4677889999999999999999887777665 5688999987 33444555555444
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.32 Score=63.59 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=66.1
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++..|..+++.+++|+|||+.....+.. +...+.+++|+.-.. -..|+..+..+ +|+...
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~~g~~vlYvs~Ee-s~~qi~~ra~r----lg~~~~------------- 135 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAAR-LAAAGGKVLYVSGEE-SASQIKLRAER----LGLPSD------------- 135 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEEEccc-cHHHHHHHHHH----cCCChh-------------
Confidence 46778899999999999999987766554 334578999987532 23344433332 333211
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc------chhHHHHHHHHHHHHhh
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ------NRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~------~RG~~lE~lL~kLr~~~ 674 (2191)
.+.+.....+..++... .. .+.++||||+++.+... +....+..++..|....
T Consensus 136 --~l~~~~e~~l~~i~~~i-~~---~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 136 --NLYLLAETNLEAILATI-EE---EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred --cEEEeCCCCHHHHHHHH-Hh---hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 13333333344444432 11 35689999999977532 12233445555555543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.13 Score=58.58 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=33.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
.+++.||+|+|||..+...+...+ ..|.+++|+... +-..+..+++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECC-CCHHHHHHHHHH
Confidence 368999999999998876665544 568889988643 334455544443
|
A related protein is found in archaea. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.57 Score=58.79 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS 618 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~ 618 (2191)
...++++||+|+|||++..-.+ ..+...|.+++++. ++|.-+.++.. .+...+|+.+.. +.. ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA-~~l~~~g~~V~li~~Dt~R~~a~eqL~---~~a~~lgv~v~~--~~~-----g~--- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLA-YYLKKNGFSVVIAAGDTFRAGAIEQLE---EHAERLGVKVIK--HKY-----GA--- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH-HHHHHcCCeEEEecCCcCcHHHHHHHH---HHHHHcCCceec--ccC-----CC---
Confidence 4678999999999998765443 34455677777665 45555554443 333445655431 110 01
Q ss_pred eEEEchHH-HHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 619 VAVCTIEK-ANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 619 IiV~TpEk-l~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|.. +...+... ...+.++|+||.++++.
T Consensus 206 ----dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 206 ----DPAAVAYDAIEHA----KARGIDVVLIDTAGRMH 235 (336)
T ss_pred ----CHHHHHHHHHHHH----HhCCCCEEEEECCCccC
Confidence 1111 12222221 22456899999999875
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.17 Score=60.27 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=33.4
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.++-.|..+++.|++|+|||..+...+...+ .+|.+++|+.=
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~ 61 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITT 61 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEc
Confidence 3566789999999999999998877666544 36888888874
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=1 Score=54.14 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
..+++++++|+|||..+. ++...+...|..++|+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLRGKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhcCCeEEEE
Confidence 589999999999998764 5566666677788777
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.29 Score=60.19 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=49.7
Q ss_pred HcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhcC--CEEEEEchhHHHHH
Q 000107 519 KRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLISTG--KMALLVLPYVSICA 584 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~g--~kaL~I~P~raLA~ 584 (2191)
-.|+.-.+..|.-|+.. ++.. .=+.+.++-|+|||+.|+-+.+...+.++ .++|+.=|+..+..
T Consensus 223 vwGi~prn~eQ~~ALdl--Lld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 223 VWGIRPRNAEQRVALDL--LLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhccCcccHHHHHHHHH--hcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 36887788889888875 6654 55778999999999999998888877643 47888778866553
|
|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.13 Score=64.60 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1220 NRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1220 ~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
..+.-=+.+-|++|++|||||+.+|++||+-|++|++||..+-.
T Consensus 78 e~l~~~~p~~l~~l~~i~GiGpk~a~~l~~lGi~tl~eL~~a~~ 121 (334)
T smart00483 78 EILNDEVYKSLKLFTNVFGVGPKTAAKWYRKGIRTLEELKKNKE 121 (334)
T ss_pred HHhcCcHHHHHHHHHccCCcCHHHHHHHHHhCCCCHHHHHhccc
Confidence 34444567889999999999999999999999999999987643
|
includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases |
| >KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.36 Score=62.12 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=106.1
Q ss_pred CceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccc-eEEEE-EEEEeCCcEEEEeCCCCcccccccccchhcc
Q 000107 1488 PINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLF-EIHGL-AVCWENSPVYYVNLPKDLWSDHRRKDRFLIY 1565 (2191)
Q Consensus 1488 ~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~-~i~Gi-a~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~ 1565 (2191)
+...|.+.+.+.++.+.+....+|++|+|.- +...| .+.++ -|+..+ +.|.|+-
T Consensus 192 ~~~~I~t~~el~~l~~~l~~~~Efavdlehh------syrsf~gltclmqISTr~-ed~iIDt----------------- 247 (687)
T KOG2206|consen 192 PKVWICTLGELEALPEILDSVIEFAVDLEHH------SYRSFLGLTCLMQISTRT-EDFIIDT----------------- 247 (687)
T ss_pred CceeeechHHHHHHHHHHhhhhhhhhhcccc------chhhhcCceeEEEeeccc-hhheehh-----------------
Confidence 3456667778888888888889999998653 22222 23222 222111 1121111
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCcccccccccccccccccccc
Q 000107 1566 GSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLL 1644 (2191)
Q Consensus 1566 ~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2191)
+ .+.+.+..|.+.|.+|++.||+|.+--|+.+|.+ +||-+
T Consensus 248 -------------~-~l~~~i~~l~e~fsdp~ivkvfhgaD~diiwlqrdfgiyv------------------------- 288 (687)
T KOG2206|consen 248 -------------F-KLRDHIGILNEVFSDPGIVKVFHGADTDIIWLQRDFGIYV------------------------- 288 (687)
T ss_pred -------------H-HHHHHHHHhhhhccCCCeEEEEecCccchhhhhccceEEE-------------------------
Confidence 0 0122334677889999999999999999999966 44433
Q ss_pred ccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1645 SPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1645 ~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.+.|||..|+.+|.= ..+++.-|-+.++.... ...-+-+.|+ .++.+.+..||-+|+.+.+-+|..|.
T Consensus 289 -----vnLfdt~~a~r~L~~--~r~sL~~ll~~~~~v~~----nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr 357 (687)
T KOG2206|consen 289 -----VNLFDTIQASRLLGL--PRPSLAYLLECVCGVLT----NKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLR 357 (687)
T ss_pred -----EechhhHHHHHHhCC--CcccHHHHHHHHHhhhh----hhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHH
Confidence 246999999999973 34555444444433221 1112345565 45667788999999999999999998
Q ss_pred HHHHH
Q 000107 1724 KLLVS 1728 (2191)
Q Consensus 1724 ~~L~~ 1728 (2191)
..|..
T Consensus 358 ~el~~ 362 (687)
T KOG2206|consen 358 KELKR 362 (687)
T ss_pred HHHHH
Confidence 66654
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.33 Score=59.16 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=29.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEch
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLP 578 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~P 578 (2191)
.+.++++.||||+|||..+ .+|...+... +..++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhcCceEEEEEH
Confidence 4679999999999999876 4566666666 777777653
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.46 Score=61.80 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
|+..-++-=-+.+. ++..|.-+++.|+||+|||..+.-.+.......|..++|+.. -.-..++..++-... .|+.
T Consensus 176 gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl-Em~~~~l~~Rl~~~~--~~v~ 250 (421)
T TIGR03600 176 GLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL-EMSAEQLGERLLASK--SGIN 250 (421)
T ss_pred ceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHH--cCCC
Confidence 34333333334442 577899999999999999988876555544456778888762 122233333332211 1221
Q ss_pred EEEE-eccCCCCC---------CCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEcccccccc---cchhHH
Q 000107 601 VRSY-YGNQGGGS---------LPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD---QNRGYL 662 (2191)
Q Consensus 601 V~~~-~G~~~~~~---------l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d---~~RG~~ 662 (2191)
...+ .|...... ...+..+.|. |++.+...++++... ...+++||||=+|.+.. ..+...
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~ 328 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEE 328 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHH
Confidence 1111 11110000 0011234443 444555555543322 22589999999999864 235556
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+..+...|+.++.+ .++.+|++|-.
T Consensus 329 ~~~i~~~Lk~lAke---------------------~~i~Vi~lsQl 353 (421)
T TIGR03600 329 LGGISRGLKALAKE---------------------LDVPVVLLAQL 353 (421)
T ss_pred HHHHHHHHHHHHHH---------------------hCCcEEEeccc
Confidence 77788888887653 56788888765
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.39 Score=59.02 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=50.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTG-KMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g-~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.++.++++||||+|||+.....+.......| .++.+|. |++.-+.+....+.. .+|+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~---~~~~p~~-------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAK---ILGVPVK-------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHH---HhCCcee--------------
Confidence 4678999999999999887655544333323 5555544 556555554444433 2333221
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEa 651 (2191)
.+.++..+...+.+ +.+.++|+||.+
T Consensus 256 ---~~~~~~~l~~~l~~------~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ---VARDPKELRKALDR------LRDKDLILIDTA 281 (282)
T ss_pred ---ccCCHHHHHHHHHH------ccCCCEEEEeCC
Confidence 12245555555543 345799999975
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.54 Score=62.40 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=85.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHHHHHHHHHHHHHhhcc--CCeEEEEeccCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSICAEKAEHLEVLLEPL--GRHVRSYYGNQGGGSL 613 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raLA~q~~~~l~~l~~~l--g~~V~~~~G~~~~~~l 613 (2191)
....+-.+++.|==.|||.+.. +++-.++ ..|.+++|++|.+..+...++++..+++.+ +..+....|..-.-.+
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f 329 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSF 329 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEe
Confidence 4567888999999999998776 4433333 269999999999999999999998877654 2223333331100011
Q ss_pred CCC--CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000107 614 PKD--TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSS 691 (2191)
Q Consensus 614 ~~~--~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~ 691 (2191)
..+ ..|.+++-. +. ...+=..++++||||++.|.+ ..+..++-.+ .
T Consensus 330 ~nG~kstI~FaSar------nt--NsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l---~----------------- 377 (738)
T PHA03368 330 PDGSRSTIVFASSH------NT--NGIRGQDFNLLFVDEANFIRP----DAVQTIMGFL---N----------------- 377 (738)
T ss_pred cCCCccEEEEEecc------CC--CCccCCcccEEEEechhhCCH----HHHHHHHHHH---h-----------------
Confidence 212 256665321 00 112234789999999999865 3455555443 1
Q ss_pred CCCCCCCCceEEEEeccC
Q 000107 692 GKADPAHGLQIVGMSATM 709 (2191)
Q Consensus 692 ~~~~~~~~iqII~mSATL 709 (2191)
..+.++|.+|-|-
T Consensus 378 -----~~n~k~I~ISS~N 390 (738)
T PHA03368 378 -----QTNCKIIFVSSTN 390 (738)
T ss_pred -----ccCccEEEEecCC
Confidence 2467899999883
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.57 Score=56.47 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
..++++.||+|+|||..+ .+|.+.+...|..++|+ +...|..++
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAKGRSVIVV-TVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEE-EHHHHHHHH
Confidence 468999999999999876 45566666667777665 333444443
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.34 Score=62.39 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=61.6
Q ss_pred EEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH------Hhhc---cCCeEEEEeccCCCCCCCCC
Q 000107 546 YCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV------LLEP---LGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 546 i~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~------l~~~---lg~~V~~~~G~~~~~~l~~~ 616 (2191)
..+.||||||++..-.||......-+..|+.|..-.+.......+.. ++.+ .+-.+..+-....-.....+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 35689999999988778876655555677777655544443332211 1110 00000000000000113345
Q ss_pred CceEEEchHHHHHHHHHhhhc----CCCCccceE-EEcccccccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEE----GRLSEIGII-VIDELHMVAD 656 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~----~~L~~l~lV-VIDEaH~l~d 656 (2191)
..|+++|+..+...+.+-.+. ..+.+..+| +-||+|++..
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 789999999987766542222 134555555 5699999874
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.9 Score=54.74 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS 618 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~ 618 (2191)
.+.+.+.||||+|||+.+...... +...|.++.++. |+|.-+.++.. .+....|+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~GkkVglI~aDt~RiaAvEQLk---~yae~lgipv~---------------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDHSRIGTVQQLQ---DYVKTIGFEVI---------------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHcCCcEEEEecCCcchHHHHHHH---HHhhhcCCcEE----------------
Confidence 468999999999999887655443 445566665554 56644444433 33222333321
Q ss_pred eEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 619 VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 619 IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.+.+|..+...+..+.. -.++++|+||-+=..
T Consensus 301 -v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs 332 (436)
T PRK11889 301 -AVRDEAAMTRALTYFKE---EARVDYILIDTAGKN 332 (436)
T ss_pred -ecCCHHHHHHHHHHHHh---ccCCCEEEEeCcccc
Confidence 22356666555544211 125799999988553
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.46 Score=50.62 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.2
Q ss_pred EEEEcCCCCchhHHHHHH
Q 000107 544 LVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~ 561 (2191)
+++.||+|+|||..+...
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 689999999999887543
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.36 Score=62.80 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+|++||.|+|||.++-+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999998654
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.39 Score=66.69 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=72.4
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|++-|.+++.. ...+++|.|..|||||.+..--+...+... ..++|+|..|+..|.++.+++.+++..
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~--- 75 (715)
T TIGR01075 3 DGLNDKQREAVAA----PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT--- 75 (715)
T ss_pred cccCHHHHHHHcC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc---
Confidence 4689999999864 356899999999999998765555444332 348999999999999999988876421
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHH-HHHHHhhhcCCCCccceEEEcccc
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNRMLEEGRLSEIGIIVIDELH 652 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~l~~~~~L~~l~lVVIDEaH 652 (2191)
....+.|+|...+- .++++......+.. .+-|+|+.+
T Consensus 76 ---------------~~~~~~i~TfHs~~~~iLr~~~~~~g~~~-~f~i~d~~d 113 (715)
T TIGR01075 76 ---------------SARGMWIGTFHGLAHRLLRAHHLDAGLPQ-DFQILDSDD 113 (715)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHHHHHHhCCCC-CCeecCHHH
Confidence 01257899988753 45554322111211 345667654
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.46 Score=52.27 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=27.4
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHH
Q 000107 544 LVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raL 582 (2191)
+++.||+|+|||..+...+.. +...+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHhcCCEEEEEECCcch
Confidence 689999999999987654443 34467888888765443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.1 Score=68.09 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
.|++-|.+++.. ++. ++-.+|.++.|+|||.+.- .+++.+...|.+++.++|+-.-+....+
T Consensus 429 ~Ls~~Q~~Av~~--il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVST--LFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHH--HHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 689999999986 554 4889999999999998743 3444455578899999999776655543
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.5 Score=56.51 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
..++++||+|+|||..+. ++...+...+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHcCCcEEEEe
Confidence 459999999999997654 34444555677777764
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.27 Score=67.29 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|++-|.+|+.. ...+++|.|..|||||.+..--+...+.. .+.++|+++.++..|.++.+++...++
T Consensus 195 ~~L~~~Q~~av~~----~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg---- 266 (684)
T PRK11054 195 SPLNPSQARAVVN----GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG---- 266 (684)
T ss_pred CCCCHHHHHHHhC----CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC----
Confidence 4799999999853 34578999999999999876544333332 245899999999999999988876531
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHH-HHHHH
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNR 633 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~ 633 (2191)
...|.|.|...+- .+++.
T Consensus 267 ----------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 267 ----------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred ----------------CCCcEEEeHHHHHHHHHHH
Confidence 0258889987764 44554
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.17 Score=65.65 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=52.2
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLE 591 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~ 591 (2191)
..+.+-|++|+.. ++....-.++.||+|+|||.+....|. .+...++++|+..|+..-+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~-~~~~k~l~~I~GPPGTGKT~TlvEiI~-qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSF-AINNKDLLIIHGPPGTGKTRTLVEIIS-QLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHH-HhccCCceEeeCCCCCCceeeHHHHHH-HHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3678899999986 233346788999999999988655554 455578999999999998888877654
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.52 Score=56.20 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+..++++||+|+|||..+. ++.+.+...+.+++|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLK-AVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCeEEee
Confidence 3468999999999997764 44455555566777654
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.75 Score=58.65 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=64.4
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++..|.-+++.+++|+|||+.+...+. .+...+.+++|+.-..+ ..|+..+..+ +|+...
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~-~~a~~g~~VlYvs~EEs-~~qi~~Ra~r----lg~~~~------------- 137 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAA-RLAKRGGKVLYVSGEES-PEQIKLRADR----LGISTE------------- 137 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH-HHHhcCCeEEEEECCcC-HHHHHHHHHH----cCCCcc-------------
Confidence 3567789999999999999998766544 34445678999875433 2333333322 332110
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc------chhHHHHHHHHHHHHhh
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ------NRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~------~RG~~lE~lL~kLr~~~ 674 (2191)
.+.+.....+..+++.. . -.+.++||||+++.+... +.-..+..++..|..+.
T Consensus 138 --~l~l~~e~~le~I~~~i-~---~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 138 --NLYLLAETNLEDILASI-E---ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred --cEEEEccCcHHHHHHHH-H---hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 12222222233343332 1 135789999999987422 12234555556555544
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=1 Score=55.04 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
+..+++.|++|+|||..+. ++.+.+...+..++|+. ...+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~~~~~v~~~~-~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIEKGVPVIFVN-FPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHcCCeEEEEE-HHHHHH
Confidence 3459999999999998874 56777776677776664 334433
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.48 Score=62.12 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=84.5
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l--- 613 (2191)
++..|.-++|.|+||.|||..+.-.+.+.....|..++|+.. ..-..|+..++-.....+.... ...|......+
T Consensus 199 G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~-i~~~~l~~~e~~~~ 276 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQR-LRTGQLTDDDWPKL 276 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHH-hhcCCCCHHHHHHH
Confidence 577889999999999999988876555544445777777642 2233444444422211111100 00111110000
Q ss_pred ------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-----chhHHHHHHHHHHHHhhcCC
Q 000107 614 ------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-----NRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 614 ------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-----~RG~~lE~lL~kLr~~~~~~ 677 (2191)
..+..+.|. |++.+...++++.... .++++||||=+|.|... .|...+..+...|+.++.+
T Consensus 277 ~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke- 353 (448)
T PRK05748 277 TIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKE- 353 (448)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHH-
Confidence 012234443 4555555555543321 26899999999998522 2445577788888887653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 354 --------------------~~i~vi~lsQl 364 (448)
T PRK05748 354 --------------------LKVPVIALSQL 364 (448)
T ss_pred --------------------hCCeEEEeccc
Confidence 56788888776
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.96 Score=61.39 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=81.8
Q ss_pred CCCCcHHHHHHHHHcCCCCCCHHHHHhhhhc-cccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhcC--CEEEEEchhH
Q 000107 506 SSWLPSEICSIYKKRGISKLYPWQVECLHVD-GVLQ--RRNLVYCASTSAGKSFVAEILMLRRLISTG--KMALLVLPYV 580 (2191)
Q Consensus 506 ~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~-~il~--gknlIi~APTGSGKTlvael~iL~~ll~~g--~kaL~I~P~r 580 (2191)
.+..|.++.+. ..+.-|.+++... .+++ .+-+++.|.=|=|||.+.-+++. .+...+ ..+++++|+.
T Consensus 200 ~~~~~~~l~~l-------~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~~~~iiVTAP~~ 271 (758)
T COG1444 200 DPVFPRELYEL-------CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAGSVRIIVTAPTP 271 (758)
T ss_pred CCCCCHHHhhh-------hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcCCceEEEeCCCH
Confidence 33355554443 2455566655431 1332 35899999999999999887773 333333 4899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCC--CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGG--GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~--~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+-++..++-+.+-+..+|.+-.+.....+. ....+...|-+-+|.... ..-++||||||=.|.
T Consensus 272 ~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIp 336 (758)
T COG1444 272 ANVQTLFEFAGKGLEFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIP 336 (758)
T ss_pred HHHHHHHHHHHHhHHHhCCccccccccccceeeecCCceeEEeeCcchhc------------ccCCEEEEehhhcCC
Confidence 999999888777777777653222211111 111233456777776532 115899999998875
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.42 Score=62.92 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=84.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS---- 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~---- 612 (2191)
++..|.-++|.|.||.|||..+.-.+.......+..++|...- .-..|+..++......+...- ...|......
T Consensus 225 G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~ 302 (476)
T PRK08760 225 GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQR-LRTGALEDEDWARV 302 (476)
T ss_pred CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHH
Confidence 5677889999999999999888765554444457777776532 223444444433222111100 0011111000
Q ss_pred -----CCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEcccccccc----cchhHHHHHHHHHHHHhhcCCC
Q 000107 613 -----LPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD----QNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 613 -----l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d----~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
.-.+..+.|. |++.+...++++... ..+++||||=++.|.. ..|...+..+...|+.++.+
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~---~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAke-- 377 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE---HDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKE-- 377 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHH--
Confidence 0011234443 556665566655432 3589999999999852 23556677788888888753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.||++|-.
T Consensus 378 -------------------l~ipVi~lsQL 388 (476)
T PRK08760 378 -------------------LNVPVIALSQL 388 (476)
T ss_pred -------------------hCCEEEEeecc
Confidence 56888888754
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.54 Score=60.66 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHH-HHHHHHHHHHHHhhccCCeEEEEeccCC-CCCCCC-CC
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVS-ICAEKAEHLEVLLEPLGRHVRSYYGNQG-GGSLPK-DT 617 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~ra-LA~q~~~~l~~l~~~lg~~V~~~~G~~~-~~~l~~-~~ 617 (2191)
-.++.|..|||||.+..+.++..+.. .+.+++++-|+.. |...++..+...+..+|+....-..... .-.... +.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 46889999999999999888887777 6788999988876 6667778888777777654221111110 001222 44
Q ss_pred ceEEEch-HHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 618 SVAVCTI-EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 618 ~IiV~Tp-Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
.|++..- +....+. ....++++.+||+..+.. ..++.++.++|
T Consensus 83 ~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~----~~~~~l~~rlr 126 (396)
T TIGR01547 83 KFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF----EDIKELIPRLR 126 (396)
T ss_pred EEEeecccCChhHhh-------CcceeeeehhhhhhhcCH----HHHHHHHHHhh
Confidence 5666554 3322211 233469999999999843 36777777764
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.37 Score=58.15 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=32.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++-.|..+++.+|+|+|||+.+...+.+.+ ..|.+++|+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis 58 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVA 58 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEE
Confidence 456789999999999999998877776654 4588888886
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.3 Score=58.69 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGS--- 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~--- 612 (2191)
++..|.-+++.|.||.|||..++-.+.......+..++|... ..-..|+..++-.... ++....+ .|......
T Consensus 261 Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl-EMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~ 337 (505)
T PRK05636 261 GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL-EMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEK 337 (505)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe-eCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHH
Confidence 466788889999999999988765544444445677776632 1222333333211111 1111000 11111000
Q ss_pred ------CCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcCC
Q 000107 613 ------LPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 613 ------l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.-.+..+.|. |...+...++++... ..+++||||=+|.|... .|...+..+...|+.++.+
T Consensus 338 ~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~---~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke- 413 (505)
T PRK05636 338 LVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK---HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKE- 413 (505)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 0012234442 444444445554332 35899999999999632 2445677788888888753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.||++|--
T Consensus 414 --------------------l~ipVi~lsQL 424 (505)
T PRK05636 414 --------------------LDVPLIAISQL 424 (505)
T ss_pred --------------------hCCeEEEEeec
Confidence 56888888743
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.99 Score=59.14 Aligned_cols=92 Identities=11% Similarity=0.170 Sum_probs=54.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..+++.|++|+|||... .++.+.+.. .+.+++|+.+ ..+..+....+... .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~----------------------~--- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT----------------------H--- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh----------------------h---
Confidence 46999999999999665 455555543 4667887765 34444444333210 0
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHh
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYA 673 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~ 673 (2191)
+.+..+.+ .+.+++++||||+|.+.. .....+.+...+...
T Consensus 195 -----~~~~~~~~------~~~~~dvLiIDDiq~l~~--k~~~~e~lf~l~N~~ 235 (450)
T PRK14087 195 -----KEIEQFKN------EICQNDVLIIDDVQFLSY--KEKTNEIFFTIFNNF 235 (450)
T ss_pred -----hHHHHHHH------HhccCCEEEEeccccccC--CHHHHHHHHHHHHHH
Confidence 11222222 244678999999999864 233445555555443
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.51 Score=64.05 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=79.4
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
..|+.-|++|+-. .+....-.+|.|=+|+|||++.. .+++.+...|+++|+++=|-+.+.-+.-.+... ++.+.
T Consensus 668 ~~LN~dQr~A~~k-~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~----~i~~l 741 (1100)
T KOG1805|consen 668 LRLNNDQRQALLK-ALAAEDYALILGMPGTGKTTTIS-LLIKILVALGKKVLLTSYTHSAVDNILIKLKGF----GIYIL 741 (1100)
T ss_pred hhcCHHHHHHHHH-HHhccchheeecCCCCCchhhHH-HHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc----Cccee
Confidence 5799999999975 34456678889999999998754 345666678999999999988877776655442 32221
Q ss_pred EEeccCCC----------------C------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 603 SYYGNQGG----------------G------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 603 ~~~G~~~~----------------~------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
. .|.... . ..-..+.|+.||-=-++..+- ..+.++++||||+-.|..+
T Consensus 742 R-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 742 R-LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred e-cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccccc
Confidence 1 121100 0 012346788888433332221 1245899999999987654
|
|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.8 Score=54.14 Aligned_cols=96 Identities=5% Similarity=-0.047 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+..++.+ ...|+||+.||+.+|.+. |+..+ ...++||+-.
T Consensus 82 ~ev~~~l~~~l~~--~~lVaHNa~FD~~fL~~~~~r~g~~~~----------------------------~~~~ldTl~l 131 (313)
T PRK06063 82 ADIAGEVAELLRG--RTLVAHNVAFDYSFLAAEAERAGAELP----------------------------VDQVMCTVEL 131 (313)
T ss_pred HHHHHHHHHHcCC--CEEEEeCHHHHHHHHHHHHHHcCCCCC----------------------------CCCEEehHHH
Confidence 4566778888854 578999999999988652 22111 1135899977
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
+..+.|....+.|.+| + ++++.+. ...+.|..|+.+|..++..+.+.+..
T Consensus 132 ar~~~~~~~~~kL~~l---~-~~~gi~~----------------~~~H~Al~DA~ata~l~~~ll~~~~~ 181 (313)
T PRK06063 132 ARRLGLGLPNLRLETL---A-AHWGVPQ----------------QRPHDALDDARVLAGILRPSLERARE 181 (313)
T ss_pred HHHhccCCCCCCHHHH---H-HHcCCCC----------------CCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 7667766566665443 3 2333321 11245678999998888777766543
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.24 Score=60.17 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=33.8
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++..|.-++|+||+|+|||..+...+.+.+. .|.+++|+.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 46778899999999999999988877666544 588899987
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.43 Score=64.27 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHH---HHHHHHHH
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAE---ILMLRRLI 567 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvae---l~iL~~ll 567 (2191)
+||+.|..-+.. ..+....|.++-.|||+|||+..+ ++..++..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k 69 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLK 69 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhh
Confidence 678888765543 113356889999999999996544 44444443
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.56 Score=61.33 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=81.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCC----
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGG---- 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~---- 611 (2191)
++..|.-++|.|+||+|||..+.-.+.+.....|..++|+..- .-..++..++-.... ++....+ .|.....
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHHH
Confidence 5777899999999999999887766655454457778777532 222333333322221 1111000 1111000
Q ss_pred ------CCCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcC
Q 000107 612 ------SLPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGE 676 (2191)
Q Consensus 612 ------~l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~ 676 (2191)
.+. +..+.| .|++.+...++++... ..+++||||=++.+... .|...+..+...|+.++.+
T Consensus 268 ~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~---~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 268 LTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE---HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 011 123444 2455555555554332 24799999999998532 2444566777788877643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 677 GTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 677 ~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 344 ---------------------~~i~vi~lsql 354 (434)
T TIGR00665 344 ---------------------LNVPVIALSQL 354 (434)
T ss_pred ---------------------hCCeEEEEecc
Confidence 56778888765
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.81 Score=60.26 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=84.9
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-ec-cCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YG-NQGGG--- 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G-~~~~~--- 611 (2191)
++..|.-+|+.|.||.|||..++-.+.......+..++|+.. ..-..|+..++-..... +....+ .| .....
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL-EMPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHhccCCCCCHHHHH
Confidence 577888999999999999987754443333345777777653 23344555444332221 111111 12 11100
Q ss_pred -------CCCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhc
Q 000107 612 -------SLPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 612 -------~l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~ 675 (2191)
.+.....+.| .|+..+...++++... -..+++||||=+++|... .|...+..+...|+.++.
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRE--NGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1112233555 3555555555554321 235899999999998632 355667788888888875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 676 EGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 676 ~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+ .++.||++|--
T Consensus 372 e---------------------l~ipVi~lsQL 383 (472)
T PRK06904 372 E---------------------LKVPVVALSQL 383 (472)
T ss_pred H---------------------hCCeEEEEEec
Confidence 3 57889998844
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.53 Score=63.12 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=44.8
Q ss_pred CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEE
Q 000107 868 GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESML 927 (2191)
Q Consensus 868 G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~il 927 (2191)
.-++.|++-.+|-.|.|=|+|-.|+..-..+ |..+=+|-+||.-|-..+..|+=+.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~----SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSG----SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCC----cchHHHHHhccceeeeeccccceec
Confidence 4579999999999999999999997544433 5556789999999988777776544
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.36 Score=59.00 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=60.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHh--cC---CEEEE-EchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIS--TG---KMALL-VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~--~g---~kaL~-I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.|+++.|+|+.|||.+..-..-.+-.. .+ ..+|+ -.|...-....+..+ +..+|..+. .
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I---L~~lgaP~~----~-------- 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI---LEALGAPYR----P-------- 126 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH---HHHhCcccC----C--------
Confidence 699999999999998765443222111 11 12333 345554444444333 333333221 0
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhc
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~ 675 (2191)
.. +..++...+.+++. --.+.++||||+|.+... ....-..++..||++..
T Consensus 127 ~~-----~~~~~~~~~~~llr---~~~vrmLIIDE~H~lLaG-s~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 127 RD-----RVAKLEQQVLRLLR---RLGVRMLIIDEFHNLLAG-SYRKQREFLNALKFLGN 177 (302)
T ss_pred CC-----CHHHHHHHHHHHHH---HcCCcEEEeechHHHhcc-cHHHHHHHHHHHHHHhh
Confidence 00 22222222222222 235789999999998764 45556778888888853
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.28 Score=67.34 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
.|++-|.+|+.. ....++|.|..|||||.+..--+...+... ..++|+|..|+..|.++.+++..++...
T Consensus 2 ~Ln~~Q~~av~~----~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~--- 74 (672)
T PRK10919 2 RLNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK--- 74 (672)
T ss_pred CCCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc---
Confidence 488999999864 356788999999999999766665555432 3479999999999999998887764310
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHH-HHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNR 633 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~ 633 (2191)
....+.|+|...+- .++++
T Consensus 75 --------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 75 --------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred --------------cccCcEEEcHHHHHHHHHHH
Confidence 01247899987753 44544
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.8 Score=54.82 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
..++++||+|+|||-.+ .++...+...+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHhCCCcEEEeeH
Confidence 67899999999999774 3445555556778887653
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.8 Score=56.99 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=53.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~ 614 (2191)
+..|+.+.++||||+|||+.+...+....... +.++.++. +++.-+.++. ..+...+|+.+..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL---k~ya~iLgv~v~~----------- 412 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL---HSYGRQLGIAVHE----------- 412 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH---HHhhcccCceeEe-----------
Confidence 44689999999999999988765554433332 34555543 4565554433 3333333433321
Q ss_pred CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 615 KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 615 ~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+.+++.+..++++ +.+.++||||..-+.
T Consensus 413 ------a~d~~~L~~aL~~------l~~~DLVLIDTaG~s 440 (559)
T PRK12727 413 ------ADSAESLLDLLER------LRDYKLVLIDTAGMG 440 (559)
T ss_pred ------cCcHHHHHHHHHH------hccCCEEEecCCCcc
Confidence 1234445555543 346799999999764
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.82 Score=63.72 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
.-+|+++|.|+|||+++.+.. +.+++
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA-r~L~C 63 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA-RSLNC 63 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHhCc
Confidence 347999999999999986644 44443
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.1 Score=53.49 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=36.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHL 590 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l 590 (2191)
.+..+++++|||+|||+++...+.......|.++.++. ++|..+.++...+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~y 274 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRY 274 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHH
Confidence 35568899999999999988766554445676766655 6777776655443
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.99 Score=54.05 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.+.+++++||+|+|||..+. ++.+.+...+.+++|+.-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~-a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLH-AACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHhCCCeEEEEEH
Confidence 34689999999999997764 334444445677777643
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.6 Score=51.63 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=52.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..+++.||+|+|||-. +.++...+.. .+.+++|+... .........+..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 4589999999999975 4555555554 46678887642 233322222111
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHh
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYA 673 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~ 673 (2191)
+.+..+..+ +...++++||.+|.+.+. ...-+.++..+..+
T Consensus 86 -----~~~~~~~~~------~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n~~ 126 (219)
T PF00308_consen 86 -----GEIEEFKDR------LRSADLLIIDDIQFLAGK--QRTQEELFHLFNRL 126 (219)
T ss_dssp -----TSHHHHHHH------HCTSSEEEEETGGGGTTH--HHHHHHHHHHHHHH
T ss_pred -----ccchhhhhh------hhcCCEEEEecchhhcCc--hHHHHHHHHHHHHH
Confidence 011222222 456899999999999753 33345555555444
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.88 Score=53.76 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=69.6
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC------CEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG------KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG 609 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g------~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~ 609 (2191)
.++..|+-+.+.||+|+|||..+...+..... .+ .+++|+..-..+-. .++.+++...+....
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~~~~---~rl~~~~~~~~~~~~------- 82 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGAFRP---ERLVQLAVRFGLDPE------- 82 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCCCCH---HHHHHHHHHhccchh-------
Confidence 45677899999999999999988766554433 34 78888876432222 222332222221110
Q ss_pred CCCCCCCCceEE---EchHHHHHHHHHhhhcCCCCccceEEEccccccccc---------chhHHHHHHHHHHHHhh
Q 000107 610 GGSLPKDTSVAV---CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ---------NRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 610 ~~~l~~~~~IiV---~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~---------~RG~~lE~lL~kLr~~~ 674 (2191)
.... .|.| .+++.+..+++.+.....-..+++||||-+-.+... .+...+..++..|+.++
T Consensus 83 --~~~~--~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 83 --EVLD--NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred --hhhc--cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 0111 1222 356666666666543222357899999998655311 12233445556666554
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.57 Score=55.50 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHH
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLE 591 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~ 591 (2191)
.++-.|..+++.||+|+|||+.+...+.+.+.+.|.+++|+.- .+-..+..+++.
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~ 68 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMK 68 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHH
Confidence 4677889999999999999999888777766543888998873 222344444443
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.86 Score=54.05 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=25.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+..++++||+|+|||..+.. +.+.....+..++|+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a-i~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA-LVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHhCCCcEEEEe
Confidence 467899999999999977643 3344444555666554
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.7 Score=55.01 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=55.8
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
..++.+++++|||+|||+.+.-.+.. +...+.++.+|. |+|.-|.++. +.+...+++.+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~-l~~~g~~V~lItaDtyR~gAveQL---k~yae~lgvpv~-------------- 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ-LLKQNRTVGFITTDTFRSGAVEQF---QGYADKLDVELI-------------- 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCccCccHHHHH---HHHhhcCCCCEE--------------
Confidence 45789999999999999887655543 444566665554 6666555543 343333343221
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
.+.+|+.+...+..+. ..++.++|+||=+=.
T Consensus 266 ---~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr 296 (407)
T PRK12726 266 ---VATSPAELEEAVQYMT---YVNCVDHILIDTVGR 296 (407)
T ss_pred ---ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCC
Confidence 1235666655554321 234679999998755
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.1 Score=53.02 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=25.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+.++++.||+|+|||..+.. +.+.....+..++|+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~-~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA-ACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHhcCCcEEEE
Confidence 467999999999999988754 334444445555554
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.18 Score=47.84 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=37.6
Q ss_pred cCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1234 TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1234 ~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
+.||+||..+|+.|. .-|.|++.|.+|++++|..+ ++++..+|.+|++-
T Consensus 6 LGI~~VG~~~ak~L~-~~f~sl~~l~~a~~e~L~~i------------~gIG~~~A~si~~f 54 (64)
T PF12826_consen 6 LGIPGVGEKTAKLLA-KHFGSLEALMNASVEELSAI------------PGIGPKIAQSIYEF 54 (64)
T ss_dssp CTSTT--HHHHHHHH-HCCSCHHHHCC--HHHHCTS------------TT--HHHHHHHHHH
T ss_pred CCCCCccHHHHHHHH-HHcCCHHHHHHcCHHHHhcc------------CCcCHHHHHHHHHH
Confidence 589999999999996 67999999999999998876 67888899988874
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.3 Score=60.69 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=52.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTG-KMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g-~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.++.+.+.||||+|||++............| +++.++. ++|.=+.++...+ ...+|+.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~---a~~~gvpv--------------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIY---GRILGVPV--------------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHH---HHhCCCCc---------------
Confidence 4678899999999999887655544434455 4655544 3454444444333 33333322
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.++.+|+.+...+.. +.+.++|+||=+=+.
T Consensus 246 --~~~~~~~~l~~al~~------~~~~D~VLIDTAGRs 275 (767)
T PRK14723 246 --HAVKDAADLRFALAA------LGDKHLVLIDTVGMS 275 (767)
T ss_pred --cccCCHHHHHHHHHH------hcCCCEEEEeCCCCC
Confidence 123366665555543 345689999988664
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.7 Score=60.70 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=83.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGS--- 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~--- 612 (2191)
++..|.-+||.|.||+|||..+.-.+.......+..++|... ..-..|...++-.... ++....+ .|......
T Consensus 209 G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 209 GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHH
Confidence 577789999999999999988765554444455777777642 1222333333311111 1111100 11111100
Q ss_pred ------CCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcCC
Q 000107 613 ------LPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 613 ------l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.-.+..+.|. |+..+...++++... ...+++||||=++.|... .|...+..+...|+.++.+
T Consensus 286 ~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~--~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke- 362 (460)
T PRK07004 286 LTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ--CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE- 362 (460)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 0012345553 455555555554332 235899999999999632 3555677888888888753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.||++|--
T Consensus 363 --------------------l~ipVi~lsQL 373 (460)
T PRK07004 363 --------------------LDVPVIALSQL 373 (460)
T ss_pred --------------------hCCeEEEEecc
Confidence 57888888754
|
|
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.8 Score=56.84 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=88.6
Q ss_pred CCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
|+.+-++---+.+ .++..|.-+|+.|.||.|||..++-.+.......+..++|...- .-..|+..++-.... ++.
T Consensus 199 gi~TG~~~LD~~~--~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~ 273 (464)
T PRK08840 199 GVDTGFTDLNKKT--AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLS--RVD 273 (464)
T ss_pred CcCCCcHHHHHhh--cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhC--CCC
Confidence 3444444334444 35778899999999999999887554444444457777776532 223344433322211 111
Q ss_pred EEEE-eccCCCC----------CCCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chh
Q 000107 601 VRSY-YGNQGGG----------SLPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRG 660 (2191)
Q Consensus 601 V~~~-~G~~~~~----------~l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG 660 (2191)
...+ .|..... .+.....+.|. |+..+...++++... ...+++||||=+|+|... .|.
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~--~~~~~lvvIDYLql~~~~~~~~~r~ 351 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIARE--HGGLSMIMVDYLQLMRVPALSDNRT 351 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHhcCCCCCCCchH
Confidence 1100 1111100 01112234442 445555555554322 135899999999999522 345
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 661 ~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
..+..+...|+.++.+ .++.||++|--
T Consensus 352 ~ei~~isr~LK~lAke---------------------l~ipVi~LsQL 378 (464)
T PRK08840 352 LEIAEISRSLKALAKE---------------------LNVPVVALSQL 378 (464)
T ss_pred HHHHHHHHHHHHHHHH---------------------hCCeEEEEEec
Confidence 5677888888888753 57888988843
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.4 Score=58.11 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=52.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAV 621 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV 621 (2191)
..++++||.|+|||+++.+.. +.+....+... -| |. ....+..+.......|..+-+.. +
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA-k~LnC~~~~~~--~p----Cg-~C~~C~~i~~~~~~Dv~eidaas---------~--- 95 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS-LCLNCSNGPTS--DP----CG-TCHNCISIKNSNHPDVIEIDAAS---------N--- 95 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH-HHHcCcCCCCC--CC----cc-ccHHHHHHhccCCCCEEEEeccc---------C---
Confidence 579999999999999886543 33332211100 01 10 11112222222223333322210 0
Q ss_pred EchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 622 ~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
...+.+..++......+...+..++||||+|++... ..+.++..|
T Consensus 96 ~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~----A~NaLLK~L 140 (491)
T PRK14964 96 TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS----AFNALLKTL 140 (491)
T ss_pred CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH----HHHHHHHHH
Confidence 122344444544334455678899999999998642 344444444
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.3 Score=51.68 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.5
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.++..|.-+.+.||+|+|||..+...+... ...+.+++|+.-.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~-~~~g~~v~yi~~e 49 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNA-ARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECC
Confidence 466778999999999999999987665544 3457788888754
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.4 Score=58.09 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=86.1
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCC---
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGG--- 611 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~--- 611 (2191)
.++..|.-+||.|.||.|||..++-.+.......|..++|...- .-..|+..++-.... ++....+ .|.....
T Consensus 219 ~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLS--RVDQTRIRTGQLDDEDWA 295 (471)
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 35778899999999999999887655555444457777776532 223344444332211 1111111 1111110
Q ss_pred -------CCCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhc
Q 000107 612 -------SLPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 612 -------~l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~ 675 (2191)
.+.....+.|- |+..+...++++... ...+++||||=+|+|... .|...+..+...|+.++.
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 373 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFRE--HGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAK 373 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 01122334443 555655556554332 236899999999998632 355567888888888875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 676 EGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 676 ~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+ .++.||++|-.
T Consensus 374 e---------------------l~ipVi~LsQL 385 (471)
T PRK08006 374 E---------------------LQVPVVALSQL 385 (471)
T ss_pred H---------------------hCCeEEEEEec
Confidence 3 57889998854
|
|
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.2 Score=58.32 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=81.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL-- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l-- 613 (2191)
++..|.-++|.|.||.|||..+.-.+.....+.|.+++|+..- .-..|+..++-.... ++....+ .|......+
T Consensus 197 G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a~~~--~v~~~~~~~~~l~~~e~~~ 273 (444)
T PRK05595 197 GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLCSEA--NVDMLRLRTGNLEDKDWEN 273 (444)
T ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHH
Confidence 5677888999999999999887655544344567788877542 222333333322211 2211111 111100000
Q ss_pred -------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcCC
Q 000107 614 -------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 614 -------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~~ 677 (2191)
-....+.|. |++.+...++++... ..+++||||=+|.|... .|...+..+...|+.++.+
T Consensus 274 ~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~---~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke- 349 (444)
T PRK05595 274 IARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE---HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKE- 349 (444)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHH-
Confidence 011223332 444554445554322 34899999999999632 2444567777788887653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 350 --------------------~~i~vi~lsQL 360 (444)
T PRK05595 350 --------------------MECPVIALSQL 360 (444)
T ss_pred --------------------hCCeEEEeecc
Confidence 56788888765
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.4 Score=57.07 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEch
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLP 578 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P 578 (2191)
..+++.||+|+|||..+ .++.+.+... +.+++|+..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 46899999999999886 4555555544 567888753
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.2 Score=55.94 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCCHHHHHhhhhcccc-cC---CeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 524 KLYPWQVECLHVDGVL-QR---RNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il-~g---knlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
.+||||...+.. +. .| .-++++||.|.|||..+.. +.+.++.
T Consensus 3 ~~yPWl~~~~~~--~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQ--LAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHH--HHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 468999999875 44 33 3689999999999988754 4445544
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=2.1 Score=55.34 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=47.2
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-CE-EEEEc-hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTG-KM-ALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g-~k-aL~I~-P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
..|+.+.+.||||+|||+......-+.+...+ .+ .++.. .+|.-+.++...+ ..-+|+.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~---a~ilGvp~~------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIY---GKLLGVSVR------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHH---HHHcCCcee-------------
Confidence 45788999999999999887654443333322 33 33333 3344444443333 333344332
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEccc
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEa 651 (2191)
.+-++..+...+. .+.+.++|+||.+
T Consensus 253 ----~v~~~~dl~~al~------~l~~~d~VLIDTa 278 (420)
T PRK14721 253 ----SIKDIADLQLMLH------ELRGKHMVLIDTV 278 (420)
T ss_pred ----cCCCHHHHHHHHH------HhcCCCEEEecCC
Confidence 1123333322222 2567789999986
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.8 Score=55.50 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=34.7
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
+.+++|+++.||+|+|||..+. +|...+...|..++| +++.+++.+...
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~g~sv~f-~~~~el~~~Lk~ 150 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAI-AIGNELLKAGISVLF-ITAPDLLSKLKA 150 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHH-HHHHHHHHcCCeEEE-EEHHHHHHHHHH
Confidence 3378999999999999998874 455555555666555 566666665543
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.9 Score=68.96 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=45.9
Q ss_pred CCCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHH---HHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAE---ILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvae---l~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
..|++.|.+++.. ++. ++-++|.|+.|+|||++.. -++.+.+...+.+++.++||-.-|.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~--il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHL--IISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHH--HHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH
Confidence 3799999999986 654 4778899999999998762 223343444677899999996665543
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.15 Score=57.99 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=44.0
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCC-CCCCCCCCceEEEc
Q 000107 545 VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG-GGSLPKDTSVAVCT 623 (2191)
Q Consensus 545 Ii~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~-~~~l~~~~~IiV~T 623 (2191)
|+.|+=|-|||.+.-+++...+.....++++.+|..+-++..++.+...+..++++......... .........|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 57899999999888776654433333589999999998888887776656655544311000000 00011245677777
Q ss_pred hHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 624 pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
|..+.. .-...+++||||+=.|.
T Consensus 81 Pd~l~~---------~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 81 PDELLA---------EKPQADLLIVDEAAAIP 103 (177)
T ss_dssp HHHHCC---------T----SCEEECTGGGS-
T ss_pred CHHHHh---------CcCCCCEEEEechhcCC
Confidence 766322 11235899999998874
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.1 Score=60.15 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
..+|++||.|+|||.++.+.
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46799999999999988654
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.94 Score=59.14 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 524 KLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
+|-.+|.+-++.. .+-+|-|-|+.-.-|-|||.... .+|.++.+. -+..|+|.|--.| .-.++++.+++. .
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsi-svlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP--~ 642 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSI-SVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLP--S 642 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHH-HHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCc--c
Confidence 5666777766541 12368899999999999998874 444555542 2467889997555 445666666665 4
Q ss_pred CeEEEEeccCCCCC-------------CCCCCceEEEchHHHHH---HHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 599 RHVRSYYGNQGGGS-------------LPKDTSVAVCTIEKANS---LVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~-------------l~~~~~IiV~TpEkl~~---Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
+++..|.|+..+.. -....+|+|+|+..+.. .+++ . ...+.|+||++-|-.. ....
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk---v----KWQYMILDEAQAIKSS-sS~R 714 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK---V----KWQYMILDEAQAIKSS-SSSR 714 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh---h----hhhheehhHHHHhhhh-hhhH
Confidence 68888899876532 12347899998876422 1221 1 2368999999998654 3444
Q ss_pred HHHHHH
Q 000107 663 LELLLT 668 (2191)
Q Consensus 663 lE~lL~ 668 (2191)
+..+|+
T Consensus 715 WKtLLs 720 (1185)
T KOG0388|consen 715 WKTLLS 720 (1185)
T ss_pred HHHHhh
Confidence 555443
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.1 Score=59.54 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=81.5
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------------cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------------TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~--------------~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
++..|.-+||.|+||.|||..++-.+...... .|.+++|+.. ..-..|+..++-.... ++...
T Consensus 213 G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~ 289 (497)
T PRK09165 213 GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSS 289 (497)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHH
Confidence 56778899999999999998876555443322 2567777642 2333444444432211 22111
Q ss_pred EE-eccCCCCC---------CCCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc------chhH
Q 000107 603 SY-YGNQGGGS---------LPKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ------NRGY 661 (2191)
Q Consensus 603 ~~-~G~~~~~~---------l~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~------~RG~ 661 (2191)
.+ .|...... .-....+.|. |++.+...++++... ..+++||||=+|.|... .|..
T Consensus 290 ~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~---~~~~lvvIDyLqli~~~~~~~~~~r~~ 366 (497)
T PRK09165 290 KIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ---HGLDLLVVDYLQLIRGSSKRSSDNRVQ 366 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhccCCCCCCCCchHH
Confidence 11 11111000 0011234443 455655556654332 35899999999988632 2334
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.+..+...|+.++.+ .++.||++|--
T Consensus 367 ev~~is~~LK~lAke---------------------l~ipVi~lsQL 392 (497)
T PRK09165 367 EISEITQGLKALAKE---------------------LNIPVIALSQL 392 (497)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCeEEEeecc
Confidence 567777788877643 56788887764
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.59 Score=58.23 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=58.0
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++-.|.-+.|.+|+|+|||+.+...+... ...|.+++||-.-.++-.+. +..+|+.+.
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~-~~~g~~v~yId~E~~~~~~~-------a~~lGvd~~------------- 108 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDPVY-------ARKLGVDID------------- 108 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEcccchhHHHH-------HHHcCCCHH-------------
Confidence 467778999999999999999987666554 44688899997655554432 222333211
Q ss_pred CCceEEEch---HHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 616 DTSVAVCTI---EKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 616 ~~~IiV~Tp---Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+++++.| |.+..++..+.. -..+++||||-+-.+
T Consensus 109 --~l~v~~p~~~eq~l~~~~~li~---~~~~~lIVIDSv~al 145 (321)
T TIGR02012 109 --NLLVSQPDTGEQALEIAETLVR---SGAVDIIVVDSVAAL 145 (321)
T ss_pred --HeEEecCCCHHHHHHHHHHHhh---ccCCcEEEEcchhhh
Confidence 2334433 333334433322 246899999998754
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.53 Score=65.45 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=71.7
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|+|-|.+++.. ...+++|.|..|||||.+..--+...+... ..++|+|.-|+..|.++.+++.+++..
T Consensus 8 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~--- 80 (721)
T PRK11773 8 DSLNDKQREAVAA----PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT--- 80 (721)
T ss_pred HhcCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc---
Confidence 4699999999864 356899999999999988765555444332 357999999999999999988876421
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHH-HHHHHhhhcCCCCccceEEEcccc
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNRMLEEGRLSEIGIIVIDELH 652 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~l~~~~~L~~l~lVVIDEaH 652 (2191)
. ...+.|+|...+- .++++......+. -.+-|+|+.+
T Consensus 81 --------~-------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 81 --------S-------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred --------C-------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 0 1247889987753 3454422211111 1245667653
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.82 Score=54.36 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=68.1
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG 610 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~ 610 (2191)
.++..|.-+.+++|+|+|||..+...++...... +.+++|+.--...- .+++.......+....
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~---~~rl~~~~~~~~~~~~-------- 82 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR---PERLVQIAERFGLDPE-------- 82 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC---HHHHHHHHHHhccChH--------
Confidence 4577789999999999999998877665533322 36888887432111 1223333222222110
Q ss_pred CCCCCCCceEE-EchHHHHHHHHHhhhcCCCC-ccceEEEcccccccc-----c----chhHHHHHHHHHHHHhh
Q 000107 611 GSLPKDTSVAV-CTIEKANSLVNRMLEEGRLS-EIGIIVIDELHMVAD-----Q----NRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 611 ~~l~~~~~IiV-~TpEkl~~Ll~~l~~~~~L~-~l~lVVIDEaH~l~d-----~----~RG~~lE~lL~kLr~~~ 674 (2191)
.......++- .+.+.+..+++.+.....-. .+++||||-+-.+.. . .+...+..++..|+.++
T Consensus 83 -~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la 156 (235)
T cd01123 83 -EVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLA 156 (235)
T ss_pred -hHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 23455555554432222223 789999999976521 1 13344556666676654
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.1 Score=59.08 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=83.7
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCC---
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGG--- 611 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~--- 611 (2191)
.++..|.-+|+.|.||.|||..+.-.+.+ +...|.+++|+.. -.-+.|+..++-.... ++....+ .|.....
T Consensus 187 ~G~~~G~LivIaarpg~GKT~fal~ia~~-~~~~g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 187 KGFNKGDLIIIAARPSMGKTTLCLNMALK-ALNQDKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCCCceEEEEcCCCCChHHHHHHHHHH-HHhcCCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 35778899999999999999887665554 4456777777653 2333444444422211 2211100 1111100
Q ss_pred -------CCCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhc
Q 000107 612 -------SLPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 612 -------~l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~ 675 (2191)
.+ .+..+.| .|+..+...++++... ...+++||||=++.|... .|...+..+...|+.++.
T Consensus 263 ~~~~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAk 339 (472)
T PRK08506 263 RLSDACDEL-SKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLAR 339 (472)
T ss_pred HHHHHHHHH-HcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01 1123444 2556665556654332 235899999999998632 244456667777877764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 676 EGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 676 ~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+ .++.||++|-.
T Consensus 340 e---------------------l~ipVi~lsQL 351 (472)
T PRK08506 340 E---------------------LDIPIIALSQL 351 (472)
T ss_pred H---------------------hCCcEEEEeec
Confidence 3 56888888855
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.3 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
-+|++||.|+|||.++.+.+ +.+.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lA-k~l~ 60 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILA-RSLN 60 (584)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhc
Confidence 36999999999999986543 4444
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.54 Score=64.88 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
.|++-|.+++.. ...+++|.|..|||||.+..--+...+... ..++++|..++..|.++.+++.+.++.
T Consensus 1 ~Ln~~Q~~av~~----~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~---- 72 (664)
T TIGR01074 1 KLNPQQQEAVEY----VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK---- 72 (664)
T ss_pred CCCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc----
Confidence 378899999864 356899999999999998776666555432 357899999999999998888765421
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKAN 628 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~ 628 (2191)
.....+.|.|...+-
T Consensus 73 -------------~~~~~v~v~TfHs~a 87 (664)
T TIGR01074 73 -------------GEARGLTISTFHTLG 87 (664)
T ss_pred -------------cccCCeEEEeHHHHH
Confidence 012358899988763
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.1 Score=54.34 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
..++++.||+|+|||.++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 468999999999999998654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.1 Score=61.82 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
-+|++||.|+|||+++.+.+ +.+.
T Consensus 40 AyLFtGPpGtGKTTLARiLA-k~Ln 63 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFA-KGLN 63 (944)
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhcc
Confidence 35899999999999986543 4443
|
|
| >PRK14666 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.93 Score=61.04 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|..||-..-+ .+. .++. .+ -.|.+|||||..|+++|++. |.|+++|..|+.
T Consensus 610 ~Lq~iRDEaHRfAi~~hR---~~r-----------~k~~---~~---s~L~~IPGIGpkr~k~LL~~-FGSle~I~~AS~ 668 (694)
T PRK14666 610 FLQHVRDTVHDYAIGRHR---RAR-----------AGAA---LT---GELQRVEGIGPATARLLWER-FGSLQAMAAAGE 668 (694)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH-----------Hhhh---hH---hHHhhCCCCCHHHHHHHHHH-hCCHHHHHhcCH
Confidence 589999999998853311 110 0000 01 56789999999999999997 789999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
++|.++ .+++.+.|+.|++..+.+
T Consensus 669 eELa~V------------~Gig~k~Ae~I~~~L~~~ 692 (694)
T PRK14666 669 EGLAAV------------PGIGPARAAALHEHLKTL 692 (694)
T ss_pred HHHHhc------------CCcCHHHHHHHHHHHHHh
Confidence 998776 457778899998876544
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.3 Score=64.98 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=45.3
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHH--HHHHHHHHh-cCCEEEEEchhHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAE--ILMLRRLIS-TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvae--l~iL~~ll~-~g~kaL~I~P~raLA~q~ 586 (2191)
.|++.|.+|+.. ++. ++.++|.|..|+|||++.. +.+++.+.. .+..++.++||-.-+.+.
T Consensus 835 ~Lt~~Qr~Av~~--iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRM--ILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHH--HHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 799999999986 664 5899999999999998853 233333322 466788899996666554
|
|
| >PRK14672 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.86 Score=61.15 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||-..- +.+. .+-.+ -..|-+|||||.+|+++|++. |.|++.|..|++
T Consensus 581 lLq~iRDEaHRFAIt~h---R~~R------------~k~~~-----~s~L~~IpGiG~kr~~~LL~~-FgS~~~i~~As~ 639 (691)
T PRK14672 581 MLQRIRDEAHRFAITRN---RHLR------------TKKEL-----VLSFERLPHVGKVRAHRLLAH-FGSFRSLQSATP 639 (691)
T ss_pred HHHHHHHHHHHHHHHHH---HHHh------------hhhhc-----ccccccCCCCCHHHHHHHHHH-hcCHHHHHhCCH
Confidence 68899999999875321 1111 11000 145669999999999999987 889999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
++|.++ .+++.++|.+|+.+|..-
T Consensus 640 eel~~v------------~gi~~~~A~~i~~~~~~~ 663 (691)
T PRK14672 640 QDIATA------------IHIPLTQAHTILHAATRS 663 (691)
T ss_pred HHHHhC------------CCCCHHHHHHHHHHhhcc
Confidence 999987 467789999999988654
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.93 Score=54.10 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=35.8
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
+..|..+++.+|+|+|||+.+...+.. ...+|.+++|+.... -..+..+.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g~~~~yi~~e~-~~~~~~~~~ 71 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYG-FLQNGYSVSYVSTQL-TTTEFIKQM 71 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCC-CHHHHHHHH
Confidence 556889999999999999987655554 445688899988432 223444443
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.9 Score=48.58 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=32.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
++..|..+++.+|+|+|||..+...+.+.+ ..+..++|+.-
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEc
Confidence 567789999999999999988766555443 46778888874
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.2 Score=59.03 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=51.6
Q ss_pred HHHHHhhhhcccc---------cCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHh
Q 000107 527 PWQVECLHVDGVL---------QRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLL 594 (2191)
Q Consensus 527 p~Q~eal~~~~il---------~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~ 594 (2191)
|||.-.+.. ++ .-+.+++.-|=+.|||......++-.+.- .+..++++++++.-|...++.+..+.
T Consensus 1 PwQ~fi~~~--i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRS--IFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHH--HhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 688876653 33 12568888999999998877665555543 45689999999999999999888876
Q ss_pred hc
Q 000107 595 EP 596 (2191)
Q Consensus 595 ~~ 596 (2191)
..
T Consensus 79 ~~ 80 (477)
T PF03354_consen 79 EA 80 (477)
T ss_pred Hh
Confidence 54
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.61 Score=58.19 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHH
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSI 582 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raL 582 (2191)
.+.|. +++.|.+.|.. .+..++|++|+|+||||||+.. -+++..+. ..+.+++.+-...+|
T Consensus 124 v~~g~--~~~~~~~~L~~-~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 124 VTSKI--MTEAQASVIRS-AIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHcCC--CCHHHHHHHHH-HHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 34454 67888888764 4667899999999999999875 45555553 234567776655554
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=1.4 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~l 566 (2191)
.++++||.|+|||..+... .+.+
T Consensus 40 ~~L~~Gp~G~GKTtla~~l-a~~l 62 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLL-AKSL 62 (363)
T ss_pred EEEEecCCCCCHHHHHHHH-HHHh
Confidence 4699999999999988653 3444
|
|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.46 Score=63.93 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=34.2
Q ss_pred cCchhhhhhcCCCCCCHHHHHHHHH-cCCCCHHHHHcCC
Q 000107 1225 GVRAEIVELTTIPYVKGSRARALYK-AGLRTPLAIAEAS 1262 (2191)
Q Consensus 1225 Gv~~ELl~L~~ip~v~~~RAR~Ly~-aG~~t~~~la~a~ 1262 (2191)
-+++.+++|++|||||..+|++||+ -|++|+++|..|-
T Consensus 82 ~~p~~~~~l~~i~GiGpk~a~~l~~~lGi~tl~~L~~a~ 120 (570)
T PRK08609 82 EVPEGLLPLLKLPGLGGKKIAKLYKELGVVDKESLKEAC 120 (570)
T ss_pred hCcHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3788999999999999999999996 6999999998653
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.3 Score=56.64 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.-+|++||.|+|||.++.+. .+.+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~l-Ak~l~ 63 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRIL-AKCLN 63 (509)
T ss_pred eeEEEECCCCCCHHHHHHHH-HHHhc
Confidence 35799999999999998653 34443
|
|
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.3 Score=58.13 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=81.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc---hhHHHHHHHHHHHHHHhhccCC-eEEEEeccCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL---PYVSICAEKAEHLEVLLEPLGR-HVRSYYGNQGG-- 610 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~---P~raLA~q~~~~l~~l~~~lg~-~V~~~~G~~~~-- 610 (2191)
++..|.-+|+.|+||.|||..+.-.+.... ..|.+++|+. |...| ..++.......+. .+..+......
T Consensus 186 Gl~~G~LiiIaarPgmGKTtfalniA~~~a-~~g~~Vl~fSLEM~~~ql----~~Rl~a~~~~i~~~~l~~l~~~~~~~~ 260 (473)
T PHA02542 186 GAERKTLNVLLAGVNVGKSLGLCSLAADYL-QQGYNVLYISMEMAEEVI----AKRIDANLLDVSLDDIDDLSKAEYKAK 260 (473)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEEeccCCHHHH----HHHHHHHHcCCCHHHHhhcCHHHHHHH
Confidence 466678899999999999998876555443 5677787775 33333 3333211111111 00000000000
Q ss_pred ----CCCCCCCceEE-------EchHHHHHHHHHhhhcCCCCccceEEEccccccccc-------chhHHHHHHHHHHHH
Q 000107 611 ----GSLPKDTSVAV-------CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-------NRGYLLELLLTKLRY 672 (2191)
Q Consensus 611 ----~~l~~~~~IiV-------~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-------~RG~~lE~lL~kLr~ 672 (2191)
..+. ...+.| .|+..+...++++... .=..+++||||=++.|.+. .|...+..+...|+.
T Consensus 261 ~~~~~~~~-~~~l~I~~~d~~~lt~~~ir~~~rrlk~~-~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~ 338 (473)
T PHA02542 261 MEKLRSKT-QGKLIIKQYPTGGAHAGHFRALLNELKLK-KNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRG 338 (473)
T ss_pred HHHHHHHh-CCCceeecCCCCCCCHHHHHHHHHHHHHh-cCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHH
Confidence 0000 112222 3566677777776432 1113799999999999532 345557778888888
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
++.+ .++.+|++|=.
T Consensus 339 lAke---------------------l~vpVi~lsQL 353 (473)
T PHA02542 339 LAVE---------------------HDVVVWTAAQT 353 (473)
T ss_pred HHHH---------------------hCCeEEEEEee
Confidence 8753 56888888776
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.7 Score=57.23 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=81.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL-- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l-- 613 (2191)
++..|.-+||.|.||.|||..+.-.+.......+..++|... ..-..|+..++-.... ++....+ .|......+
T Consensus 222 Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~ 298 (472)
T PRK06321 222 GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVGDLSGRDFQR 298 (472)
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcCCCCHHHHHH
Confidence 466788889999999999988765433333345667776642 2223333433322111 2211111 121111000
Q ss_pred -------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-------chhHHHHHHHHHHHHhh
Q 000107 614 -------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-------NRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 614 -------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-------~RG~~lE~lL~kLr~~~ 674 (2191)
-.+..+.|. |.+.+...++++... ..+++||||=++.|... .|...+..+...|+.++
T Consensus 299 ~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~---~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lA 375 (472)
T PRK06321 299 IVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES---YDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLA 375 (472)
T ss_pred HHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHH
Confidence 012345554 555555555554332 35899999999998632 23445666777788776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 675 GEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 675 ~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.+ .++.+|++|-.
T Consensus 376 ke---------------------l~vpVi~lsQL 388 (472)
T PRK06321 376 RE---------------------LNIPILCLSQL 388 (472)
T ss_pred HH---------------------hCCcEEEEeec
Confidence 43 56788888776
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.6 Score=55.96 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 625 Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
+.+..++......+...+..+|||||+|++.. ..++.++..+
T Consensus 111 d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----~a~naLLk~L 152 (507)
T PRK06645 111 DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----GAFNALLKTL 152 (507)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEChhhcCH----HHHHHHHHHH
Confidence 34444554443445667889999999999863 2344444444
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.85 Score=57.35 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=60.3
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++-.|.-+.|.+|+|+|||+.+...+.... ..|.+++||-.--++-.+. +..+|+.+.
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~~~-------a~~lGvdld------------- 113 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPVY-------AKKLGVDID------------- 113 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHHHH-------HHHcCCCHH-------------
Confidence 3566788999999999999999887766543 4688999998766655432 222333221
Q ss_pred CCceEEEc---hHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 616 DTSVAVCT---IEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 616 ~~~IiV~T---pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
++++.. .|.+..++..+... ..+++||||=+-.+
T Consensus 114 --~lli~qp~~~Eq~l~i~~~li~s---~~~~lIVIDSvaaL 150 (349)
T PRK09354 114 --NLLVSQPDTGEQALEIADTLVRS---GAVDLIVVDSVAAL 150 (349)
T ss_pred --HeEEecCCCHHHHHHHHHHHhhc---CCCCEEEEeChhhh
Confidence 233333 45555555544332 46889999987654
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.4 Score=59.82 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
-+|++||.|+|||+++.+. .+.+.
T Consensus 40 AyLFtGPpGvGKTTlAriL-AKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIF-AKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhc
Confidence 5699999999999987653 34443
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.2 Score=57.49 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLV 576 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I 576 (2191)
..+++|+||+|+|||.+.-. +++.+... +..++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhcCCcEEEEE
Confidence 46899999999999988654 34444333 3455665
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=2.5 Score=57.99 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHH
Q 000107 544 LVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~iL~~l 566 (2191)
++|+|+||+|||++.-.. ++.+
T Consensus 784 LYIyG~PGTGKTATVK~V-LrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSV-IQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHHH-HHHH
Confidence 469999999999987554 3444
|
|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=5.9 Score=47.81 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhc
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWIL 1662 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL 1662 (2191)
.+.+..+..++.+ ...|+||+.||+..|.+......+. +. ...++||+..+..+
T Consensus 129 ~evl~~f~~fi~~--~~lVahna~fD~~fL~~~~~~~~~~-----------------------~~-~~~~iDt~~l~r~l 182 (244)
T PRK07740 129 AEVLHRFYAFIGA--GVLVAHHAGHDKAFLRHALWRTYRQ-----------------------PF-THRLIDTMFLTKLL 182 (244)
T ss_pred HHHHHHHHHHhCC--CEEEEeCHHHHHHHHHHHHHHhcCC-----------------------Cc-CCCeechHHHHHHH
Confidence 3455666666654 4789999999999886532110000 00 01368999888888
Q ss_pred CCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1663 WPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1663 ~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
.|....++| +.++. +++.+. .+ .+.|..||.+|.+|+..+...+.+.
T Consensus 183 ~~~~~~~sL---~~l~~-~~gi~~------~~----------~H~Al~Da~ata~l~~~ll~~~~~~ 229 (244)
T PRK07740 183 AHERDFPTL---DDALA-YYGIPI------PR----------RHHALGDALMTAKLWAILLVEAQQR 229 (244)
T ss_pred cCCCCCCCH---HHHHH-HCCcCC------CC----------CCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 886556654 44432 333321 11 1346789999999998888777653
|
|
| >PRK14670 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.1 Score=59.72 Aligned_cols=79 Identities=25% Similarity=0.325 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||-.. +. +++.+ .+ ..|-.|||||..|.++|++. |.|++.|.+|+.
T Consensus 489 lLq~iRDEaHRFAit~-----------hR----k~R~k----~~---s~L~~I~GiG~kr~~~LL~~-Fgs~~~I~~As~ 545 (574)
T PRK14670 489 ILQNVRDEAHRKANGF-----------NK----KLREN----IK---LNYTKIKGIGEKKAKKILKS-LGTYKDILLLNE 545 (574)
T ss_pred HHHHHHHHHHHHHHHH-----------HH----Hhhcc----cc---cccccCCCCCHHHHHHHHHH-hCCHHHHHhCCH
Confidence 5888999999887532 11 12222 22 36779999999999999987 889999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
++|.++ ++++.++|..|.+..+
T Consensus 546 eeL~~v------------~gi~~~~A~~I~~~l~ 567 (574)
T PRK14670 546 DEIAEK------------MKINIKMAKKIKKFAE 567 (574)
T ss_pred HHHHhC------------CCCCHHHHHHHHHHHH
Confidence 999988 5677889999987543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.07 E-value=2.4 Score=55.74 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAE 585 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q 585 (2191)
..+++.||+|+|||..+. ++.+.+... +.+++|+.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 569999999999998763 455555544 567777744 344433
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.7 Score=59.33 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhh
Q 000107 762 GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEET 841 (2191)
Q Consensus 762 ~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~ 841 (2191)
..+.+....++.+.+..|+++||.+|....+..+...|...+..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~------------------------------------ 214 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA------------------------------------ 214 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC------------------------------------
Confidence 34566777888889999999999999999888888877665421
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 842 l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
..|+.+|++++..+|........+|..+|+|.|..+ .=.-+++...||
T Consensus 215 --~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~LgLII 262 (665)
T PRK14873 215 --GDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLGLVA 262 (665)
T ss_pred --CcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCCCEEE
Confidence 128889999999999999999999999999999763 334455554443
|
|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=5.9 Score=47.47 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcC
Q 000107 1584 QRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILW 1663 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~ 1663 (2191)
+.+..+..++.. +...|+||+.||+.+|.+.. ...+ .+......++||+..++.++
T Consensus 81 e~~~~l~~~~~~-~~~lVahNa~FD~~fL~~~~---~r~~--------------------~~~~~~~~~iDt~~l~~~~~ 136 (232)
T PRK07942 81 EIADALREAWAR-GVPVVVFNAPYDLTVLDREL---RRHG--------------------LPSLVPGPVIDPYVIDKAVD 136 (232)
T ss_pred HHHHHHHHHhhc-CCEEEEeCcHhhHHHHHHHH---HHcC--------------------CCCccCCcEeeHHHHHhhhh
Confidence 334444444432 45679999999998886521 1110 00000012589998888776
Q ss_pred CCC-CCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000107 1664 PDD-ERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKL 1725 (2191)
Q Consensus 1664 P~~-~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~ 1725 (2191)
+.. ..++ |..++. +++.+.. + ...|..||.+|.+|+..+...
T Consensus 137 ~~~~~~~~---L~~l~~-~~gi~~~------~----------aH~Al~Da~ata~l~~~l~~~ 179 (232)
T PRK07942 137 RYRKGKRT---LTALCE-HYGVRLD------N----------AHEATADALAAARVAWALARR 179 (232)
T ss_pred cccCCCCC---HHHHHH-HcCCCCC------C----------CCChHHHHHHHHHHHHHHHHH
Confidence 632 2344 444433 2333210 1 234678999998888776543
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.82 Score=57.01 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=59.2
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++-.|+-+.|.+|+|+|||+.+...+... ...+.+++||-+--++-.+.+ ..+|+.+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~-~~~g~~~vyId~E~~~~~~~a-------~~lGvd~-------------- 107 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEA-QKLGGTVAFIDAEHALDPVYA-------KKLGVDL-------------- 107 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEECccccHHHHHH-------HHcCCCH--------------
Confidence 356678899999999999999887766554 346888999987655544322 2223221
Q ss_pred CCceEEE---chHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 616 DTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 616 ~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.++++. +.|.+..++..+... ..+++||||=+-.+
T Consensus 108 -~~l~v~~p~~~eq~l~i~~~li~s---~~~~lIVIDSvaal 145 (325)
T cd00983 108 -DNLLISQPDTGEQALEIADSLVRS---GAVDLIVVDSVAAL 145 (325)
T ss_pred -HHheecCCCCHHHHHHHHHHHHhc---cCCCEEEEcchHhh
Confidence 113333 345555555544332 35899999987654
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.76 E-value=1.6 Score=58.87 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=47.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAV 621 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV 621 (2191)
..+|++||.|+|||.++-+.. +.+.......-.-+-.. ..+..+.......|..+-+.. .+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA-kal~c~~~~~~~pC~~C-------~~C~~i~~g~~~dv~eidaas---------~~-- 99 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA-KAVNCLNPPDGEPCNEC-------EICKAITNGSLMDVIEIDAAS---------NN-- 99 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhcCCCCCCCCCCCcc-------HHHHHHhcCCCCCeEEeeccc---------cC--
Confidence 458889999999999987653 34432211000001111 122222222222332221110 00
Q ss_pred EchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 622 ~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..+.+..+.......+......++||||+|+|..
T Consensus 100 -~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 100 -GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred -CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 1233444554443445567789999999999864
|
|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.5 Score=55.53 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHh----cCcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH----AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~----~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+..++.+ ...|+||+.||+..|++ +|+.... ..++||+..
T Consensus 83 ~evl~~f~~fl~~--~~lVaHNa~FD~~fL~~~~~r~g~~~~~----------------------------~~~iDTl~l 132 (557)
T PRK07883 83 EEVLPAFLEFARG--AVLVAHNAPFDIGFLRAAAARCGYPWPG----------------------------PPVLCTVRL 132 (557)
T ss_pred HHHHHHHHHHhcC--CEEEEeCcHHHHHHHHHHHHHcCCCCCC----------------------------CCcEecHHH
Confidence 4556677777764 56889999999998865 3332211 135899855
Q ss_pred HHhcCC--CCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWP--DDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1659 awLL~P--~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
+.-+.| ....++ |..++. +++.+.. ..+.|..||.+|..++..+...+..
T Consensus 133 ar~l~~~~~~~~~~---L~~L~~-~~gi~~~----------------~~H~Al~DA~ata~l~~~l~~~~~~ 184 (557)
T PRK07883 133 ARRVLPRDEAPNVR---LSTLAR-LFGATTT----------------PTHRALDDARATVDVLHGLIERLGN 184 (557)
T ss_pred HHHhcccCCCCCCC---HHHHHH-HCCcccC----------------CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 544444 334454 443332 3333210 1245778999999999888877754
|
|
| >PRK14973 DNA topoisomerase I; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.39 Score=67.48 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=36.8
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
.||+++||..+-|..||++||+|++|++.|+|++|..+
T Consensus 803 ~~~~~~gv~~~~~~~~~~~G~~~~~d~~~a~p~~La~~ 840 (936)
T PRK14973 803 SRLKEIGVPAVSLKKYQEAGFDTPEDFCSVHPAYLALK 840 (936)
T ss_pred HhhcccCCCHHHHHHHHHhcCCCHHHHHhcCHHHHhcC
Confidence 59999999999999999999999999999999999987
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.8 Score=59.84 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.+..+.+++|.+||+.-|.+.+..+.+.+...+ ..|+.+||+++
T Consensus 306 ~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~------------------------------------i~v~ll~G~~~ 349 (681)
T PRK10917 306 AIEAGYQAALMAPTEILAEQHYENLKKLLEPLG------------------------------------IRVALLTGSLK 349 (681)
T ss_pred HHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcC------------------------------------cEEEEEcCCCC
Confidence 345688999999999988888888876654321 23889999999
Q ss_pred HHHHHHHHHHhhcCCceEEEeccc-ccccCCCCCceEEe
Q 000107 855 VEEREVVETCYRKGLVRVLTATST-LAAGVNLPARRVIF 892 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATst-La~GVNLPav~VVI 892 (2191)
..+|..+...+.+|...|+|+|.. +...+.++...+||
T Consensus 350 ~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 350 GKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred HHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 999999999999999999999975 44467777776554
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=2.8 Score=54.86 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
..+++.||+|+|||..+. ++...+...+.+++|+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEeeH
Confidence 468999999999998764 555666666888888864
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.9 Score=57.93 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
-+|++||.|.|||+++.+. .+.+..
T Consensus 40 A~LFtGP~GvGKTTLAriL-AkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRIL-AKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhcC
Confidence 5799999999999998653 444443
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=88.51 E-value=2.5 Score=57.28 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=73.8
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++.+||.+.|.+..+.++..|...+. + -.+.+|..+ .
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~---------------------------------------~-~~l~qg~~~--~ 506 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP---------------------------------------A-EIVIQSEKN--R 506 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC---------------------------------------C-CEEEeCCCc--c
Confidence 567999999999999888887754321 1 123444332 3
Q ss_pred HHHHHHHhhc----CCceEEEecccccccCCC--------CC--c-eEEee-cCCCCCccc-------------------
Q 000107 858 REVVETCYRK----GLVRVLTATSTLAAGVNL--------PA--R-RVIFR-QPRIGRDFI------------------- 902 (2191)
Q Consensus 858 R~~Ve~~Fr~----G~ikVLVATstLa~GVNL--------Pa--v-~VVI~-~p~~g~~~i------------------- 902 (2191)
|..+++.|+. |.-.||++|..+-.|||+ |+ . .|||+ .|++-.+++
T Consensus 507 ~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~ 586 (636)
T TIGR03117 507 LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINE 586 (636)
T ss_pred HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHH
Confidence 4567788886 468999999999999999 34 2 35554 343222211
Q ss_pred CcccccccccccCCCCCC-CceEEEEEeCh
Q 000107 903 DGTRYRQMAGRAGRTGID-TKGESMLICKP 931 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d-~~Ge~ill~~~ 931 (2191)
....++|-+||--|..-| ..|..+++-..
T Consensus 587 a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 587 SLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred HHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 012458999999998855 37866655444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=88.39 E-value=2 Score=53.44 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++++++.||+|+|||..+. ++...+...|..++|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCEEEEE
Confidence 35799999999999998864 55566666777776653
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.7 Score=54.69 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
-++|+.||+|+|||.++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 58999999999999998754
|
|
| >PRK07773 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=88.28 E-value=4.5 Score=57.67 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=83.6
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGS--- 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~--- 612 (2191)
++..|.-++|.|++|+|||..+.-.+.+...+.+..++|+. +-.-..|+..++..... ++....+ .|......
T Consensus 213 Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fS-lEms~~ql~~R~~s~~~--~i~~~~i~~g~l~~~~~~~ 289 (886)
T PRK07773 213 GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFS-LEMSKEQLVMRLLSAEA--KIKLSDMRSGRMSDDDWTR 289 (886)
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEe-cCCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHH
Confidence 56678889999999999998887666555445566777664 22233444444433221 1111000 11110000
Q ss_pred ------CCCCCceEE-----EchHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhcCC
Q 000107 613 ------LPKDTSVAV-----CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 613 ------l~~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.-.+..|.| .|+..+..-++++... ..+++||||=++.|... .|...+..+...|+.++.+
T Consensus 290 ~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~---~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAke- 365 (886)
T PRK07773 290 LARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQE---ANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKE- 365 (886)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-
Confidence 001223444 2555555555554433 35899999999998632 3555677888888877653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 366 --------------------l~vpvi~lsQL 376 (886)
T PRK07773 366 --------------------LEVPVVALSQL 376 (886)
T ss_pred --------------------HCCcEEEeccc
Confidence 56788888755
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.5 Score=57.39 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
..+|++||.|+|||+++.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999998654
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.5 Score=47.35 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
++.+++.||.|+|||+.....+-+ +. ...+++|+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~-~~-~~~~~~yi 35 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD-LL-PPENILYI 35 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-hc-ccccceee
Confidence 578999999999999887554322 22 23445554
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.6 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
-++++||.|+|||.++.+. .+.+.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~l-Ak~Ln 63 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRIL-AKSLN 63 (618)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhc
Confidence 4699999999999998653 34444
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.8 Score=55.97 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 625 Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
+.+..+...+...+.+.+..+|||||+|.+.. ...+.++..+
T Consensus 110 d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----~~~~~LLk~L 151 (397)
T PRK14955 110 DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----AAFNAFLKTL 151 (397)
T ss_pred HHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----HHHHHHHHHH
Confidence 44444555544445677889999999999864 2344454444
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.85 Score=57.04 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=42.6
Q ss_pred HHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHH
Q 000107 517 YKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSI 582 (2191)
Q Consensus 517 l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raL 582 (2191)
|.+.|+ +.+.|.+.+.. .+..+++++++|+||||||+.. -+++..+. ....++++|-.+.+|
T Consensus 127 l~~~g~--~~~~~~~~L~~-~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 127 YVERGI--MTAAQREAIIA-AVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHhcCC--CCHHHHHHHHH-HHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 334554 56788888864 4678899999999999999664 45555442 234577777666554
|
|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=88.01 E-value=5.6 Score=50.22 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhccCCccEEEechHHHHHHHHh
Q 000107 1582 IKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH 1614 (2191)
Q Consensus 1582 ~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~ 1614 (2191)
+.+.|..|.+++.+ ...|+||+.||+..|.+
T Consensus 112 f~eVl~el~~fL~g--~vLVaHNA~FD~~FL~~ 142 (377)
T PRK05601 112 FSQILKPLDRLIDG--RTLILHNAPRTWGFIVS 142 (377)
T ss_pred HHHHHHHHHHHhCC--CEEEEECcHHHHHHHHH
Confidence 35678888888874 56899999999998765
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.8 Score=60.50 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=93.9
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHH-----------h------cCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLI-----------S------TGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll-----------~------~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
...|+.++.+-..|.|||..-....+...- . .-+..|||+|. ++-.|...++..=... +++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lK 448 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLK 448 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cce
Confidence 335788899999999999876554443311 0 12457999997 5667777777654433 478
Q ss_pred EEEEeccCCCCCCC----CCCceEEEchHHHHHHHHHhhhcCC----------------CC--ccceEEEcccccccccc
Q 000107 601 VRSYYGNQGGGSLP----KDTSVAVCTIEKANSLVNRMLEEGR----------------LS--EIGIIVIDELHMVADQN 658 (2191)
Q Consensus 601 V~~~~G~~~~~~l~----~~~~IiV~TpEkl~~Ll~~l~~~~~----------------L~--~l~lVVIDEaH~l~d~~ 658 (2191)
|..|+|........ -++|||++|+..+-.=+..--..+. |- ..=-|++||++|+-..
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess- 527 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS- 527 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch-
Confidence 99999987543332 2589999999876332211000000 00 1235899999998652
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc----CCCHHHHHHHhhcc
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT----MPNVAAVADWLQAA 722 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT----L~N~~~la~wL~a~ 722 (2191)
....-.++.+| +.+..-+.|.| +.+.--+..||+..
T Consensus 528 -sS~~a~M~~rL---------------------------~~in~W~VTGTPiq~Iddl~~Ll~fLk~~ 567 (1394)
T KOG0298|consen 528 -SSAAAEMVRRL---------------------------HAINRWCVTGTPIQKIDDLFPLLEFLKLP 567 (1394)
T ss_pred -HHHHHHHHHHh---------------------------hhhceeeecCCchhhhhhhHHHHHHhcCC
Confidence 33333344444 33456889999 44444555666544
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.1 Score=62.53 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|+|-|.+++.. ...+++|.|..|||||.+..--+...+...+ .++|++.-|+..|.++.+++.+++..
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~--- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT----TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP--- 75 (726)
T ss_pred cccCHHHHHHHhC----CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc---
Confidence 4689999999864 3578999999999999987766655554322 47999999999999999888776421
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHH-HHHHH
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNR 633 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~ 633 (2191)
....+.|+|...+- .++++
T Consensus 76 ---------------~~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 76 ---------------VAEDIWISTFHSMCVRILRR 95 (726)
T ss_pred ---------------ccCCcEEEcHHHHHHHHHHH
Confidence 01357899987753 34544
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.5 Score=59.73 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhc
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWIL 1662 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL 1662 (2191)
.+.+..+..++.+ ...|+||+.||+..|++.- ...+ .++. ...++||+..++.+
T Consensus 258 ~evl~~f~~fl~~--~iLVaHNa~FD~~fL~~~~---~r~g--------------------~~~~-~~~~IDTl~lar~l 311 (1213)
T TIGR01405 258 EEVLEKFKEFFKD--SILVAHNASFDIGFLNTNF---EKVG--------------------LEPL-ENPVIDTLELARAL 311 (1213)
T ss_pred HHHHHHHHHHhCC--CeEEEEChHHHHHHHHHHH---HHcC--------------------CCcc-CCCEeEHHHHHHHH
Confidence 4556777788864 5789999999999887531 1110 0000 01368999888888
Q ss_pred CCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1663 WPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1663 ~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
.|+...++|.+| +.. ++.+.. .++.|..||.+|..++..+..++.+
T Consensus 312 ~p~~k~~kL~~L---ak~-lgi~~~----------------~~HrAl~DA~aTa~I~~~ll~~l~~ 357 (1213)
T TIGR01405 312 NPEYKSHRLGNI---CKK-LGVDLD----------------DHHRADYDAEATAKVFKVMVEQLKE 357 (1213)
T ss_pred hccCCCCCHHHH---HHH-cCCCCC----------------CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 887777765544 332 232210 1345778888888888887766643
|
The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.63 E-value=4 Score=51.08 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=32.8
Q ss_pred CCCCCHHHHHhhhhc--ccccCC---eEEEEcCCCCchhHHHHHHHHHHHHhc
Q 000107 522 ISKLYPWQVECLHVD--GVLQRR---NLVYCASTSAGKSFVAEILMLRRLIST 569 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~--~il~gk---nlIi~APTGSGKTlvael~iL~~ll~~ 569 (2191)
+..+||||..++... .+..|+ -++++||.|.||+..+.. +.+.++..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~ 53 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLAS 53 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCC
Confidence 357899999988641 112333 599999999999988754 44555543
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=14 Score=45.35 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=57.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhH-HHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYV-SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~r-aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+..+.+.+|+|+|||..+...+.. +...+.++.++. +.+ +.+. +|+.+...+++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~~~v~~i~~D~~ri~~~~----ql~~~~~~~~~~~~-------------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDHSRIGTVQ----QLQDYVKTIGFEVI-------------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcCCeEEEEecCCCCHHHHH----HHHHHhhhcCceEE--------------
Confidence 4579999999999999988765543 333455665554 333 2222 33333333343331
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
...+++.+...+..+. ...++++||||-+=.... -...++.+...+
T Consensus 135 ---~~~~~~~l~~~l~~l~---~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~ 180 (270)
T PRK06731 135 ---AVRDEAAMTRALTYFK---EEARVDYILIDTAGKNYR--ASETVEEMIETM 180 (270)
T ss_pred ---ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcC--CHHHHHHHHHHH
Confidence 1124555544444321 234679999999865421 133455554444
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.3 Score=55.07 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHH
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSI 582 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raL 582 (2191)
+.+-|.+.|.. .+..+++++++||||||||+.. -+++..+.. .+.+++++--..++
T Consensus 117 ~~~~~~~~L~~-~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLRE-AVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHH-HHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 55666666653 3567899999999999999886 445555543 25678877766555
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=2.7 Score=62.56 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=43.8
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHH--HHHHHHHh-cCCEEEEEchhHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEI--LMLRRLIS-TGKMALLVLPYVSICAE 585 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael--~iL~~ll~-~g~kaL~I~P~raLA~q 585 (2191)
.|++.|.+++.. ++. ++-++|.|..|+|||++.-. .+++.+.. .+.+++.++||---|.+
T Consensus 967 ~Lt~~Q~~Av~~--il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRM--ILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHH--HHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 689999999986 665 47899999999999987532 22222222 35678889999766654
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.41 E-value=1.1 Score=56.91 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
..|+++.||||+|||.+.-. +++.+..
T Consensus 42 p~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 35799999999999988644 4555554
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=87.38 E-value=4.5 Score=47.65 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=32.3
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++..|.-+++.|++|+|||..+...+... ...+.+++|+.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~-~~~g~~v~yi~ 54 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVET-AGQGKKVAYID 54 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEE
Confidence 356678999999999999999887766544 34578898883
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.38 E-value=4 Score=54.84 Aligned_cols=95 Identities=12% Similarity=0.209 Sum_probs=47.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAV 621 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV 621 (2191)
..+|++||.|+|||..|... .+.+.+.+....-.+-.-..|.+ +.......+..+-+. ..+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l-Ak~L~C~~~~~~~~Cg~C~sCr~-------i~~~~h~DiieIdaa---------s~i-- 99 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF-AKAINCLNPKDGDCCNSCSVCES-------INTNQSVDIVELDAA---------SNN-- 99 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHhcCCCCCCCCCCcccHHHHH-------HHcCCCCceEEeccc---------ccc--
Confidence 46899999999999988654 34444322211111111112222 111111122211110 011
Q ss_pred EchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 622 ~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..+.+..++......+.....+++||||+|++..
T Consensus 100 -gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 100 -GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133 (605)
T ss_pred -CHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH
Confidence 2233444444433344556778999999999853
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.5 Score=53.16 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
...+++.||+|+|||+.+-..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 347999999999999887543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=3 Score=54.94 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+|++||+|+|||+.+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999998654
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.94 Score=51.90 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=30.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAE 585 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q 585 (2191)
+..++|+++.||||+|||..+ .++.+.+...|..++|+. ...|..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIRKGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHHTT--EEEEE-HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhccCCcceeEee-cCceecc
Confidence 456899999999999999887 455666666788888764 4344433
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.20 E-value=3.1 Score=56.50 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHH
Q 000107 544 LVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~iL~~ll 567 (2191)
+|++||.|+|||+++.+.. +.+.
T Consensus 41 yLf~Gp~GvGKTTlAr~lA-k~L~ 63 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA-KGLN 63 (647)
T ss_pred EEEECCCCCCHHHHHHHHH-Hhhh
Confidence 6899999999999986543 3443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=86.97 E-value=6.4 Score=51.09 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=33.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHL 590 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l 590 (2191)
..+.++|++|+|||+.+.-.+. .+...|.++++|. |+|.-|.++.+.+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~~~G~kV~lV~~D~~R~aA~eQLk~~ 150 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQRKGFKPCLVCADTFRAGAFDQLKQN 150 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEcCcccchhHHHHHHHH
Confidence 5788999999999987764433 3445677777665 6777666655443
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.6 Score=56.18 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
...++...+..++++||.+|++.-+..++..+.+.+. ..++
T Consensus 14 ~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~---------------------------------------~~v~ 54 (505)
T TIGR00595 14 YLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFG---------------------------------------SQVA 54 (505)
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---------------------------------------CcEE
Confidence 3455666677788999999999988877777655331 1278
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE-Eee
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV-IFR 893 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V-VI~ 893 (2191)
.+||+++..+|..+.....+|..+|+|+|..+-. ..+++..+ |||
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 8999999999999999999999999999975432 34555554 444
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=86.91 E-value=1.4 Score=51.81 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++|+.||+|.|||+.|.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999998865
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=86.87 E-value=3.9 Score=48.40 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=32.6
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.++..|..+.+.+|+|+|||..+...+... ...+.+++|+.=
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~-~~~~~~v~yi~~ 59 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEA-AKNGKKVIYIDT 59 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEC
Confidence 356678999999999999998887665544 345788888753
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.6 Score=54.07 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=37.3
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
.++..|.-+++.+++|+|||+.+...+.. +...+.+++|+..-.. ..|+..+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~-~a~~g~kvlYvs~EEs-~~qi~~r 140 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQ-LAKNQMKVLYVSGEES-LQQIKMR 140 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHH-HHhcCCcEEEEECcCC-HHHHHHH
Confidence 45778899999999999999988765543 4455778999986433 3444433
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.5 Score=55.99 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 624 pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
.+.+..+...+...+.+.+..+|||||+|.+... ..+.++..|
T Consensus 109 vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~----a~naLLK~L 151 (620)
T PRK14954 109 VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA----AFNAFLKTL 151 (620)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH----HHHHHHHHH
Confidence 3455555555444456778899999999998642 344555444
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.2 Score=56.21 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000107 1236 IPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVL 1301 (2191)
Q Consensus 1236 ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~ 1301 (2191)
-+||+..-+.+|-+|||+|++||+.+++.+|.++. +++...|.+|++.|++++.
T Consensus 28 ~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~------------gis~~~~~~i~~~~~~~~~ 81 (337)
T PTZ00035 28 SAGINAADIKKLKEAGICTVESVAYATKKDLCNIK------------GISEAKVEKIKEAASKLVP 81 (337)
T ss_pred cCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhh------------CCCHHHHHHHHHHHHHhcc
Confidence 38899999999999999999999999999999983 5667889999999988863
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=3.9 Score=55.69 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=47.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAV 621 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV 621 (2191)
..+|++||.|+|||.++... .+.+...........|. . ....++.+.......+..+-+ ...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l-Ak~L~c~~~~~~~~~~C----g-~C~~C~~i~~g~h~D~~ei~~---------~~~~-- 101 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL-AKSLNCLNSDKPTPEPC----G-KCELCRAIAAGNALDVIEIDA---------ASNT-- 101 (620)
T ss_pred ceEEEECCCCCChHHHHHHH-HHHhcCCCcCCCCCCCC----c-ccHHHHHHhcCCCccEEEEec---------cccC--
Confidence 46799999999999998654 34443321110000111 1 112222222222222222111 0011
Q ss_pred EchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 622 ~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..+.+..++.............+|||||+|+|..
T Consensus 102 -~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 102 -GVDNIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred -CHHHHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 2344445554433333456779999999999864
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.9 Score=56.50 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=48.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC-EEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCC----CC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG----GS 612 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~-kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~----~~ 612 (2191)
.|+.+.+.||||+|||++.....-......|. ++.+|. ++|.-+.+....|.++ +|+.+......... ..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aei---lGVpv~~~~~~~Dl~~aL~~ 331 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKI---LGVPVHAVKDAADLRLALSE 331 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHH---hCCCeeccCCchhHHHHHHh
Confidence 46789999999999999877655444444443 554443 5566666655555443 34443221111000 11
Q ss_pred CCCCCceEEEchHHH
Q 000107 613 LPKDTSVAVCTIEKA 627 (2191)
Q Consensus 613 l~~~~~IiV~TpEkl 627 (2191)
+...-.++|-|+++.
T Consensus 332 L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 332 LRNKHIVLIDTIGMS 346 (484)
T ss_pred ccCCCeEEeCCCCcC
Confidence 222346888898853
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=86.49 E-value=1.5 Score=55.80 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~l 566 (2191)
..+++|+||+|+|||.++.. +++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 46899999999999987643 44444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.37 E-value=5 Score=54.38 Aligned_cols=110 Identities=20% Similarity=0.307 Sum_probs=54.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAV 621 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV 621 (2191)
..+|++||.|.|||..+.+.. +.+...+...- --|+...|. ....++.+.......|..+... ..
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA-k~L~c~~~~~~-~~~~~~~cg-~c~~C~~i~~g~h~Dv~e~~a~---------s~--- 111 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA-RALNYEGPDGD-GGPTIDLCG-VGEHCQAIMEGRHVDVLEMDAA---------SH--- 111 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HhhCcCCcccc-CCCccccCc-ccHHHHHHhcCCCCceEEeccc---------cc---
Confidence 469999999999999986543 44433221000 011111111 1222333332222222221110 01
Q ss_pred EchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 622 ~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
...+.+..++........+.+.++|||||+|++... ..+.++..|
T Consensus 112 ~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~----a~naLLKtL 156 (598)
T PRK09111 112 TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA----AFNALLKTL 156 (598)
T ss_pred CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH----HHHHHHHHH
Confidence 113344445544334455678899999999998642 344555444
|
|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=86.29 E-value=9.8 Score=45.83 Aligned_cols=30 Identities=7% Similarity=0.069 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHh
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH 1614 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~ 1614 (2191)
.+.+..+..++.+ ...|+||+.||+.+|.+
T Consensus 117 ~evl~~l~~~~~~--~~lVaHna~FD~~fL~~ 146 (239)
T PRK09146 117 ERILDELLEALAG--KVVVVHYRRIERDFLDQ 146 (239)
T ss_pred HHHHHHHHHHhCC--CEEEEECHHHHHHHHHH
Confidence 3455666666643 46899999999999865
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=86.25 E-value=2.7 Score=58.65 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~ 564 (2191)
...|+|+.||+|+|||.++....-+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999998765443
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=2 Score=55.85 Aligned_cols=57 Identities=28% Similarity=0.259 Sum_probs=37.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
...+++++|+|+|||+++.-.+.. +... |.++++|. ++|.-+.++...+ ....|+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~-l~~~~G~kV~lV~~D~~R~aa~eQL~~~---a~~~gv~v 159 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY-LKKKKKKKVLLVAADVYRPAAIEQLKTL---GEQIGVPV 159 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHHhcCCcEEEEEccccchHHHHHHHHH---HhhcCCeE
Confidence 357889999999999887654443 3344 77776665 6777776555443 33445554
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.79 Score=61.56 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=88.1
Q ss_pred CCCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH-HHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA-EHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~-~~l~~l~~~lg~ 599 (2191)
...+|+|.+.... +.. -+.++++.++-+|||.+.+..+...+......++++.|+..+|.... .+|..++.....
T Consensus 15 ~~~~Py~~eimd~--~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 15 TDRTPYLREIMDA--LSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCChhHHHHHHh--cCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 3678999998765 433 37899999999999997766655555556778999999999999977 456665543211
Q ss_pred eEEEEec---cCCC-----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc--cchhHHHHHHHHH
Q 000107 600 HVRSYYG---NQGG-----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD--QNRGYLLELLLTK 669 (2191)
Q Consensus 600 ~V~~~~G---~~~~-----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d--~~RG~~lE~lL~k 669 (2191)
--..+.. .... ..++ +..|.++....... ..-..+++|++||++..-+ .+-|..++++..|
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~--------l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSN--------LRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred HHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCcc--------cccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 0001111 0000 1122 34455554322111 1223579999999999853 3467888888888
Q ss_pred HHH
Q 000107 670 LRY 672 (2191)
Q Consensus 670 Lr~ 672 (2191)
..-
T Consensus 164 ~~t 166 (557)
T PF05876_consen 164 TKT 166 (557)
T ss_pred Hhh
Confidence 743
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=2 Score=57.46 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||-..- +.+ +.+-.+ + ..|-.|||||..|.++|++. |.|++.|.+|+.
T Consensus 487 lLq~irDEaHRFAi~~h---R~~------------r~k~~~--~---S~Ld~I~GiG~kr~~~Ll~~-Fgs~~~ik~As~ 545 (567)
T PRK14667 487 VFGLIRDEAHRFALSYN---RKL------------REKEGL--K---DILDKIKGIGEVKKEIIYRN-FKTLYDFLKADD 545 (567)
T ss_pred HHHHHHHHHHHHHHHHH---HHH------------hhcccc--c---CccccCCCCCHHHHHHHHHH-hCCHHHHHhCCH
Confidence 58899999999875331 111 111111 1 45679999999999999987 889999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
++|.++ +++.++|.+|.+.
T Consensus 546 eeL~~v-------------gi~~~~A~~I~~~ 564 (567)
T PRK14667 546 EELKKL-------------GIPPSVKQEVKKY 564 (567)
T ss_pred HHHHHc-------------CCCHHHHHHHHHH
Confidence 999886 2456788888764
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=86.18 E-value=5.2 Score=49.36 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
+.++++.||+|+|||++|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 56899999999999998854
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.9 Score=54.79 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCHHHHHhhhhcccc------cC----CeEEEEcCCCCchhHHHHHHHHHHHH---hcCCEEEEEchhHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVL------QR----RNLVYCASTSAGKSFVAEILMLRRLI---STGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il------~g----knlIi~APTGSGKTlvael~iL~~ll---~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+-|||.-.+.. ++ .+ +-.+|..|-+-|||..+...++..++ ..+..+.+++|+.+-+.+.+...
T Consensus 61 ~l~PwQkFiia~--l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAA--LFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHH--HhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHH
Confidence 577899888754 43 12 56899999999999777643333322 35778999999999999888887
Q ss_pred HHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhc-CCC--CccceEEEccccccccc
Q 000107 591 EVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEE-GRL--SEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 591 ~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~-~~L--~~l~lVVIDEaH~l~d~ 657 (2191)
+....... ..... ..-..+-...|..+..+.++..... ... .+..+.|+||+|+.++.
T Consensus 139 r~mv~~~~-~l~~~--------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 139 RDMVKRDD-DLRDL--------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HHHHHhCc-chhhh--------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 76654332 11000 0111122223333333333221111 122 34689999999998763
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.98 E-value=4.9 Score=54.50 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 627 ANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 627 l~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+..++......+...+.+++||||+|++..
T Consensus 104 ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 104 IRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred HHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 334444433344567789999999999864
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.97 E-value=6.3 Score=48.66 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=72.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE--chh--------HHHHHHHHHHHHHHhhccCCeEEEEeccCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV--LPY--------VSICAEKAEHLEVLLEPLGRHVRSYYGNQG 609 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I--~P~--------raLA~q~~~~l~~l~~~lg~~V~~~~G~~~ 609 (2191)
++..+++.+|-|||||...--.+.. ....|-+.+++ -|+ +.++.|...++... ...+|.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~--------~k~~gs-- 116 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI--------VKSFGS-- 116 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh--------heeecc--
Confidence 5689999999999999654333332 23334444433 232 33333333333221 111232
Q ss_pred CCCCCCCCceEEEchHHHHHHHHHhhhcCCCCcc-ceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 000107 610 GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI-GIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSG 688 (2191)
Q Consensus 610 ~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l-~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~ 688 (2191)
+.|.+..++.-+......... -.+|+||+|......|...+..++...+..
T Consensus 117 -------------fte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~--------------- 168 (408)
T KOG2228|consen 117 -------------FTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA--------------- 168 (408)
T ss_pred -------------cchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc---------------
Confidence 222233333333233333333 467889999988888888888877766432
Q ss_pred CCCCCCCCCCCceEEEEeccCCCHHHH
Q 000107 689 TSSGKADPAHGLQIVGMSATMPNVAAV 715 (2191)
Q Consensus 689 ~~~~~~~~~~~iqII~mSATL~N~~~l 715 (2191)
..++-|||+|.-+.-.+.+
T Consensus 169 --------r~Piciig~Ttrld~lE~L 187 (408)
T KOG2228|consen 169 --------RAPICIIGVTTRLDILELL 187 (408)
T ss_pred --------CCCeEEEEeeccccHHHHH
Confidence 3578899999887433333
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=85.87 E-value=2.9 Score=54.33 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||+++..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4899999999999988764
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=85.79 E-value=3.3 Score=57.25 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEE
Q 000107 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAY 848 (2191)
Q Consensus 769 ~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~ 848 (2191)
..++...+..++++||.+|++.-+.++...+.+.+. ..++.
T Consensus 180 l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg---------------------------------------~~v~~ 220 (679)
T PRK05580 180 LQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFG---------------------------------------APVAV 220 (679)
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---------------------------------------CCEEE
Confidence 345555666788999999999988877776654321 12888
Q ss_pred EcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCce-EEee
Q 000107 849 HHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARR-VIFR 893 (2191)
Q Consensus 849 hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~-VVI~ 893 (2191)
+||+++..+|..+......|..+|+|+|.... -+.+.+.. +|||
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvD 265 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVD 265 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEE
Confidence 99999999999999999999999999997533 24455554 4454
|
|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
Probab=85.76 E-value=9.6 Score=44.58 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcc---CCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHH
Q 000107 1583 KQRWKRIGEIMEK---RDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVS 1659 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~---~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAa 1659 (2191)
.+.++.+.+++.. .+...|+||+.||+.+|.+..-..... .. +.....++||+..+
T Consensus 88 ~~~~~~l~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~--------------------~~-~~~~~~~lDTl~la 146 (200)
T TIGR01298 88 HEIFKVVRKAMKASGCQRAILVGHNANFDLGFLNAAVERTSLK--------------------RN-PFHPFSTFDTATLA 146 (200)
T ss_pred HHHHHHHHHHHHhcccCCCEEEEECchhhHHHHHHHHHHhCCC--------------------CC-CCCCCcEEEHHHHH
Confidence 3455555555532 345689999999999987532111000 00 00011258999777
Q ss_pred HhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1660 WILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1660 wLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
+.+.|. + +|+.+.. +++.+.. ....+.|..|+.+|..|+..+..++.+.
T Consensus 147 r~~~~~---~---~L~~l~~-~~gi~~~--------------~~~~H~Al~Da~ata~lf~~l~~~~~~~ 195 (200)
T TIGR01298 147 GLAYGQ---T---VLAKACQ-AAGXDFD--------------STQAHSALYDTEKTAELFCEIVNRWKRL 195 (200)
T ss_pred HHHcCc---c---cHHHHHH-HcCCCcc--------------ccchhhhHHhHHHHHHHHHHHHHHHHHc
Confidence 776653 2 2444333 2232210 0113356789999999988887776543
|
in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases. |
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.73 E-value=2.1 Score=59.49 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHh----cCcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH----AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~----~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
...+..++.|+.+ ...|+||+.||+-.|.. +|+..- + ..++||.-.
T Consensus 489 ~~vL~kf~~~~~d--~IlVAHNasFD~gFl~~~~~k~~~~~~--------------~--------------~pvIDTL~l 538 (1444)
T COG2176 489 EEVLEKFREFIGD--SILVAHNASFDMGFLNTNYEKYGLEPL--------------T--------------NPVIDTLEL 538 (1444)
T ss_pred HHHHHHHHHHhcC--cEEEeccCccchhHHHHHHHHhCCccc--------------c--------------CchhhHHHH
Confidence 4566788888876 57899999999987754 222111 0 125899999
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
||-|+|.-.+|+|..|.+.+ +.+. ..++.|..|+.+|-+++-.+.+.+++
T Consensus 539 ar~L~P~~ksh~Lg~l~kk~----~v~l----------------e~hHRA~yDaeat~~vf~~f~~~~ke 588 (1444)
T COG2176 539 ARALNPEFKSHRLGTLCKKL----GVEL----------------ERHHRADYDAEATAKVFFVFLKDLKE 588 (1444)
T ss_pred HHHhChhhhhcchHHHHHHh----CccH----------------HHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999877664443 2221 12334556777777666666655543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.73 E-value=3.7 Score=55.45 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCchhHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~i 562 (2191)
..+|+++|.|+|||+++.+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468899999999999987644
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.6 Score=51.68 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.|+++.|++|+|||..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3899999999999988754
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=3.6 Score=54.68 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57899999999999988754
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=7.3 Score=50.89 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCe
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
...+++++++|+|||+++.-.+ ..+...|.++++|. ++|.-+.++. +.+...+++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA-~~L~~~g~kV~lV~~D~~R~aa~eQL---~~la~~~gvp 152 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA-RYFKKKGLKVGLVAADTYRPAAYDQL---KQLAEKIGVP 152 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH-HHHHHcCCeEEEecCCCCCHHHHHHH---HHHHHHcCCc
Confidence 4688999999999998876544 34455677776665 4455444443 3334444544
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.3 Score=54.50 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+-.|+..+..+|+.+|+|..-.+... .|..++.. .+|.
T Consensus 1031 ~~LDeLL~kLkaegHRvL~yfQMTkM~d----l~EdYl~y------------------------------------r~Y~ 1070 (1185)
T KOG0388|consen 1031 VVLDELLPKLKAEGHRVLMYFQMTKMID----LIEDYLVY------------------------------------RGYT 1070 (1185)
T ss_pred eeHHHHHHHhhcCCceEEehhHHHHHHH----HHHHHHHh------------------------------------hccc
Confidence 3455666777778999999986544332 23332221 1233
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCc-eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceE
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLV-RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGE 924 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~i-kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge 924 (2191)
-.-+.|.....+|..+...|....+ -.|++|..-.-|||+.+..-||-++.. .++.-=.|...||-|.|....-.
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD----WNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD----WNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCC----CCcchhhHHHHHHHhccCcccee
Confidence 4457788999999999999998666 457899999999999997766543321 24444568889999999888888
Q ss_pred EEEEeChhh
Q 000107 925 SMLICKPEE 933 (2191)
Q Consensus 925 ~ill~~~~e 933 (2191)
+|.+.....
T Consensus 1147 vyrl~~rgT 1155 (1185)
T KOG0388|consen 1147 VYRLITRGT 1155 (1185)
T ss_pred eeeeccccc
Confidence 888876643
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=85.39 E-value=4.5 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
++++.||+|+|||..+... .+.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~-~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRAL-ARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHH-HHHhc
Confidence 7999999999999887543 34443
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.39 E-value=3.7 Score=56.75 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhc
Q 000107 763 KDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETL 842 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l 842 (2191)
.+...+.-|++.+..+|+.||||..-.+... .|..++...++
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLD----VLeqFLnyHgy---------------------------------- 1301 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLD----VLEQFLNYHGY---------------------------------- 1301 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHH----HHHHHHhhcce----------------------------------
Confidence 3455666677888889999999986544332 33333322211
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcCC--ceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCC
Q 000107 843 PSGVAYHHAGLTVEEREVVETCYRKGL--VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 843 ~~GVa~hHagLs~~eR~~Ve~~Fr~G~--ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
-..-+-|....++|....+.|.... ...|++|..-..||||-+..-||-|+.. | +...=.|---|+-|-|..
T Consensus 1302 --lY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsD---w-NPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1302 --LYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSD---W-NPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred --EEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCC---C-CchhhhHHHHHHHhhcCc
Confidence 1233568888999999999998643 3677899999999999886655433321 1 222222333333333333
Q ss_pred CceEEEEEeChhh
Q 000107 921 TKGESMLICKPEE 933 (2191)
Q Consensus 921 ~~Ge~ill~~~~e 933 (2191)
+.-..|.|++..-
T Consensus 1376 RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1376 RDVHIYRLISERT 1388 (1958)
T ss_pred cceEEEEeeccch
Confidence 4667788877643
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.36 E-value=5 Score=53.38 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
.++++||+|+|||+++.. +.+.+..
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhc
Confidence 459999999999999854 4455543
|
|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.82 Score=60.10 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=43.9
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
+|.-|+||++.|+..|+++||.|+++||.+++..+..+. +++.+.|.+++.+|+..+
T Consensus 208 ~lslv~gi~~~~~~~L~~~GI~ti~~La~~~~~~l~~~~------------~~~~~~~~~l~~qA~a~~ 264 (457)
T TIGR03491 208 HLSLVPGIGPSRYRLLQELGIHTLEDLAAADPNDLEDFG------------EQGLGVAEQLVQQARAQL 264 (457)
T ss_pred CeeecCCCCHHHHHHHHHcCCCcHHHHhcCCcccccccc------------ccCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999865554431 233456666666666553
|
Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats. |
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=85.16 E-value=3.1 Score=52.03 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHH
Q 000107 1582 IKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCI 1657 (2191)
Q Consensus 1582 ~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~l 1657 (2191)
+.+.|..+.+++.+ ...|+||+.||+.+|.+. ++..+. ..++||+-
T Consensus 67 f~ev~~~~~~fl~~--~~lVaHNa~FD~~fL~~~~~r~~~~~~~----------------------------~~~idT~~ 116 (309)
T PRK06195 67 FDKIWEKIKHYFNN--NLVIAHNASFDISVLRKTLELYNIPMPS----------------------------FEYICTMK 116 (309)
T ss_pred HHHHHHHHHHHhCC--CEEEEECcHHHHHHHHHHHHHhCCCCCC----------------------------CCEEEHHH
Confidence 35667788888854 578999999999888652 221111 13689986
Q ss_pred HHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1658 VSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1658 AawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
.+.-+.|....++|.+|.+. ++.+. -++.|..||.+|.+|+..+..++..
T Consensus 117 lar~l~~~~~~~~L~~L~~~----~gi~~-----------------~~H~Al~DA~ata~l~~~l~~~~~~ 166 (309)
T PRK06195 117 LAKNFYSNIDNARLNTVNNF----LGYEF-----------------KHHDALADAMACSNILLNISKELNS 166 (309)
T ss_pred HHHHHcCCCCcCCHHHHHHH----cCCCC-----------------cccCCHHHHHHHHHHHHHHHHHhcc
Confidence 66666676556665544322 22210 1245778999998888777665543
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=5.7 Score=53.46 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHh
Q 000107 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGW-YDLEGLIAKFQNRVS 1223 (2191)
Q Consensus 1158 ~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~-~~~~~ll~~~~~RL~ 1223 (2191)
+||-|..=+-..++.+|.+.|| | .-.+..+++.++-+.|.- ..+...+..+..+|.
T Consensus 559 iAMYL~r~lt~~Sl~~IG~~Fg--R--------dHSTV~~A~~kI~~~~~~d~~l~~~V~~L~~~i~ 615 (617)
T PRK14086 559 IAMYLCRELTDLSLPKIGQQFG--R--------DHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 615 (617)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC--C--------ChhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 4555555566777888888887 3 134455555566665552 356666666666653
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=85.02 E-value=2.4 Score=55.09 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=36.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
..+++++++|+|||+++.-.+.......|.++++|. ++|..+.++.+.+ ....|+.+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~---a~~~gvp~ 158 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVL---GQQVGVPV 158 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHH---HHhcCCce
Confidence 578899999999999876555442224577777665 6666665554443 33345443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=6.1 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+-++++.||+|+|||.+|-..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3567999999999999998654
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.86 E-value=6.2 Score=52.64 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 625 Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
+.+..++......+......+|||||+|++.. ...+.++..+
T Consensus 100 d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----~A~NALLK~L 141 (535)
T PRK08451 100 DDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----EAFNALLKTL 141 (535)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHH
Confidence 44444444322234567789999999999864 2344444444
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.9 Score=63.26 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=76.3
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
++++-|.++|.. .++|++|+|.-|||||.+..--+++.+... -.++++|+=|++.|.++.+++.+.+...-..
T Consensus 1 ~~t~~Q~~ai~~----~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIYT----RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHhC----CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 368899999863 689999999999999999887777766532 1358999999999999998887765432000
Q ss_pred EEEeccCC-CCCCCCCCceEEEchHHHH-HHHHHhhhcCCCCccceEEEccccc
Q 000107 602 RSYYGNQG-GGSLPKDTSVAVCTIEKAN-SLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 602 ~~~~G~~~-~~~l~~~~~IiV~TpEkl~-~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
--.... ...+..-...-|+|...+. .++++......++ -++=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 000000 0001111356789987753 4455422211111 14456887764
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=84.53 E-value=1.8 Score=47.77 Aligned_cols=79 Identities=24% Similarity=0.224 Sum_probs=51.9
Q ss_pred EcCCCCHHHHHHHHHHhhcCC-ceEEEecccccccCCCCCc---eEEe-ecCCCCCc------------------ccC--
Q 000107 849 HHAGLTVEEREVVETCYRKGL-VRVLTATSTLAAGVNLPAR---RVIF-RQPRIGRD------------------FID-- 903 (2191)
Q Consensus 849 hHagLs~~eR~~Ve~~Fr~G~-ikVLVATstLa~GVNLPav---~VVI-~~p~~g~~------------------~is-- 903 (2191)
+..+....+...+.+.|+... -.||++|.-++.|||+|+. .||| ..|.+... +..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 444555656788888898654 3799999889999999983 3443 33443111 111
Q ss_pred -----cccccccccccCCCCCCCceEEEEE
Q 000107 904 -----GTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 904 -----~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
.....|.+||+-|... ..|..+++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 1245899999999874 46765554
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.4 Score=52.14 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=37.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
++..|..+++.+++|+|||..+...+...+. .|.+++|+.--. -..+..+++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC-CHHHHHHHHHH
Confidence 4567889999999999999887766655444 588898886543 33444444433
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK14669 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.9 Score=56.58 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||-..- +.+. +++.. + ..|..|||||..|+++|++. |.|++.|.+|+.
T Consensus 525 lLq~iRDEaHRFAIt~h---Rk~R-----------~k~~~---~---S~L~~IpGIG~kr~~~LL~~-FgSi~~I~~As~ 583 (624)
T PRK14669 525 LVQSIRDEAHRFAITFH---RKRR-----------ETRDR---T---SELLEIPGVGAKTVQRLLKH-FGSLERVRAATE 583 (624)
T ss_pred HHHHHHHHHHHHHHHHh---HHHh-----------hHHHH---H---HHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 58899999999875331 1111 01111 1 45669999999999999987 889999999999
Q ss_pred HHHHHHH
Q 000107 1264 SEIVKAL 1270 (2191)
Q Consensus 1264 ~~l~~~l 1270 (2191)
++|.+++
T Consensus 584 eeL~~vi 590 (624)
T PRK14669 584 TQLAAVV 590 (624)
T ss_pred HHHHHHh
Confidence 9998873
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.47 E-value=5.2 Score=49.77 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.1
Q ss_pred cccccCCeEEEEcCCCCchhHHHH
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvae 559 (2191)
.+|...+-+++.+|+|+|||+.|=
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAk 203 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAK 203 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHH
Confidence 355667899999999999999874
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.45 E-value=6.4 Score=45.95 Aligned_cols=128 Identities=17% Similarity=0.150 Sum_probs=72.9
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc---hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL---PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~---P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~ 614 (2191)
+--|.=++|-++.|+|||......+. -.+..|.++.|++ |.++...| ...+++.|..++-.-.-.-++
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~Y-G~L~~g~~v~yvsTe~T~refi~q--------m~sl~ydv~~~~l~G~l~~~~ 95 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAY-GFLMNGYRVTYVSTELTVREFIKQ--------MESLSYDVSDFLLSGRLLFFP 95 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHH-HHHhCCceEEEEEechhHHHHHHH--------HHhcCCCchHHHhcceeEEEE
Confidence 33467789999999999987665544 3445678888776 33333332 333444432211100000001
Q ss_pred CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 615 KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 615 ~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
-+..=+...++....++..+++.....+-+++|||=+..+.-..--..+..+++.+|.++
T Consensus 96 ~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~ 155 (235)
T COG2874 96 VNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS 155 (235)
T ss_pred ecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH
Confidence 111122334555666777666666677889999999988764322234555677777775
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.6 Score=57.62 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhc
Q 000107 763 KDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETL 842 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l 842 (2191)
.+.+...+++.+.+..|+++||-+|.......+...+...+.
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-------------------------------------- 270 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-------------------------------------- 270 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--------------------------------------
Confidence 344667788999999999999999999887777777665543
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 843 PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 843 ~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
..|+.+|++|++.+|..+....++|..+|+|.|-. |-=.-+++..+||
T Consensus 271 -~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS-AlF~Pf~~LGLII 318 (730)
T COG1198 271 -AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS-ALFLPFKNLGLII 318 (730)
T ss_pred -CChhhhcccCChHHHHHHHHHHhcCCceEEEEech-hhcCchhhccEEE
Confidence 12778999999999999999999999999999975 3344555666554
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.89 E-value=5.7 Score=49.89 Aligned_cols=115 Identities=10% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCCHHHHHhhhhc--ccccC---CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 524 KLYPWQVECLHVD--GVLQR---RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~g---knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
.+||||...+... .+..| .-++++||.|.||+..+.. +.+.++.......- | -.....++.+.....
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC~~~~~~~--~-----Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMCQTPQGDQ--P-----CGQCHSCHLFQAGNH 73 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCC--C-----CCCCHHHHHHhcCCC
Confidence 3588888877640 12233 4688999999999988754 34555543221000 0 011112222211111
Q ss_pred CeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 599 RHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
-.+..+... .+..| ..+.+-.+.+.+...+.-...+++|||++|.|..
T Consensus 74 PD~~~i~p~-------~~~~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~ 121 (325)
T PRK06871 74 PDFHILEPI-------DNKDI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE 121 (325)
T ss_pred CCEEEEccc-------cCCCC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCH
Confidence 111111110 01111 2344444444444445567789999999999864
|
|
| >PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif | Back alignment and domain information |
|---|
Probab=83.85 E-value=3.1 Score=44.24 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=28.3
Q ss_pred cchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1652 ~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.-|||+.+|||||.+. +....+.+|++ |.|.. -+...+.++.+|+..|..+|
T Consensus 87 GDDPlLlAYLlDPsNt-----~p~~varRY~~----------~~W~~--------dA~~RA~~t~~L~~~L~prL 138 (138)
T PF09281_consen 87 GDDPLLLAYLLDPSNT-----NPEGVARRYLG----------GEWPE--------DAATRALATARLLRALPPRL 138 (138)
T ss_dssp ---HHHHHHHH-TT-------SHHHHHHHH-T----------S---S--------SHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchhhhhcCccCC-----ChHHHHHHhcC----------CCCCc--------cHHHHHHHHHHHHHHhhhcC
Confidence 3699999999999754 23334455543 33432 34566777888887777654
|
The domain confers 5'-3' exonuclease activity to the polymerase []. ; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 4DF4_A 3T3F_A 1QSY_A 3OJS_A 3PO5_A 3OJU_A 1QTM_A 1QSS_A 3PY8_A 4DFJ_A .... |
| >PRK07758 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=2.6 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1237 PYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1237 p~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
|+++..-.+.|.+|||.|++||+..+.++|.++
T Consensus 40 ~~LSvRA~N~Lk~AGI~TL~dLv~~te~ELl~i 72 (95)
T PRK07758 40 SLLSAPARRALEHHGIHTVEELSKYSEKEILKL 72 (95)
T ss_pred ccccHHHHHHHHHcCCCcHHHHHcCCHHHHHHc
Confidence 455555568999999999999999999999998
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.53 E-value=6.2 Score=49.91 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=29.4
Q ss_pred CCHHHHHhhhhcccc--cC---CeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 525 LYPWQVECLHVDGVL--QR---RNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 525 l~p~Q~eal~~~~il--~g---knlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
+||||...... +. .+ .-+++.||.|.||+..+.. +.+.++.
T Consensus 2 ~yPW~~~~~~~--l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNR--LQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHH--HHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 57888888765 32 22 4788999999999988854 4455554
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=7.8 Score=50.88 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEch
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLP 578 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P 578 (2191)
..+++.||+|+|||..+. ++.+.+... +.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 469999999999998763 455555443 457888764
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=83.41 E-value=2.5 Score=52.76 Aligned_cols=104 Identities=10% Similarity=0.141 Sum_probs=58.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~ 611 (2191)
++..|.-+.+++|+|+|||..+...++...+. .+.+++||----.+-.+ ++.++...+|+...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~e---Ri~~~a~~~g~d~~--------- 159 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPD---RIRAIAERFGVDPD--------- 159 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHH---HHHHHHHHcCCChH---------
Confidence 56677899999999999998887666544332 25689999743222112 22222222332211
Q ss_pred CCCCCCceEE---EchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 612 SLPKDTSVAV---CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 612 ~l~~~~~IiV---~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.... +|.+ -+.+....++..+.....-.++++||||=+--+
T Consensus 160 ~~l~--~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 160 AVLD--NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HhcC--cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 0111 1333 245665555554332222246899999997644
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >COG2251 Predicted nuclease (RecB family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=1.4 Score=55.62 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=34.1
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
+|.=+|||+..|++.|++.||+|++|||+++...+..+
T Consensus 226 ~L~Lv~Gi~~~r~~~l~~~GI~Ti~~LA~~~~~~~~~~ 263 (474)
T COG2251 226 DLSLVPGITPSRYDVLEEVGITTIEDLADASLPILELV 263 (474)
T ss_pred ceeccCCCCHHHHHHHHHcCcchHHHHHhccccchhhh
Confidence 56668999999999999999999999999998877665
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=2.1 Score=54.05 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000107 1236 IPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVL 1301 (2191)
Q Consensus 1236 ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~ 1301 (2191)
-+||+..-+.+|-++||+|++||+.+++.+|.++ .+++...|.+|++.|++++.
T Consensus 36 ~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~------------~g~s~~~~~ki~~~a~~~~~ 89 (344)
T PLN03187 36 SQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGI------------KGLSEAKVDKICEAAEKLLN 89 (344)
T ss_pred hCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh------------cCCCHHHHHHHHHHHHHhhc
Confidence 3789999999999999999999999999999997 35677889999999988863
|
|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
Probab=83.29 E-value=1.9 Score=50.13 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=45.1
Q ss_pred hhhcCCCCCCHHHHHHHHHc-CCCCH-HHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKA-GLRTP-LAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~a-G~~t~-~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
..|..|||||+.+|+++.+. |..++ +.|.++++++|.++ ++++.+.|.+|+.+-+.-+
T Consensus 73 ~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~v------------~Gig~k~A~~I~~~l~~~~ 132 (192)
T PRK00116 73 RLLISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTKV------------PGIGKKTAERIVLELKDKL 132 (192)
T ss_pred HHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhC------------CCCCHHHHHHHHHHHHHHh
Confidence 46778999999999999875 54443 45777888888776 6788899999998766544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.26 E-value=20 Score=45.14 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=34.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEV 592 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~ 592 (2191)
.++.+.+++|+|+|||+.+.-.+. .+...+++++++. +++.-+.++...+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~-~l~~~g~~V~Li~~D~~r~~a~eql~~~a~ 166 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH-KYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH-HHHhcCCeEEEEecCccchhhHHHHHHHHH
Confidence 467889999999999988754433 2334567777664 456666555544433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=83.08 E-value=5.8 Score=55.95 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+.+++.+ ...|+||+.||+..|.+. |+.+. ..++||+-.
T Consensus 74 ~ev~~~~~~~l~~--~~lVaHN~~FD~~fL~~~~~~~g~~~~-----------------------------~~~iDT~~l 122 (820)
T PRK07246 74 SQVARHIYDLIED--CIFVAHNVKFDANLLAEALFLEGYELR-----------------------------TPRVDTVEL 122 (820)
T ss_pred HHHHHHHHHHhCC--CEEEEECcHHHHHHHHHHHHHcCCCCC-----------------------------CCceeHHHH
Confidence 4556677777765 568999999999998652 22211 125899988
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
+..+.|...+++|.+|.. +++.+.. ..+.|..||.+|..|+..+..++..
T Consensus 123 a~~~~p~~~~~~L~~L~~----~lgl~~~----------------~~H~Al~DA~ata~L~~~l~~~l~~ 172 (820)
T PRK07246 123 AQVFFPTLEKYSLSHLSR----ELNIDLA----------------DAHTAIADARATAELFLKLLQKIES 172 (820)
T ss_pred HHHHhCCCCCCCHHHHHH----HcCCCCC----------------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 888888766776555432 2332210 1245778999999999998887754
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.08 E-value=4.7 Score=55.79 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
.++++.||+|+|||..+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 58999999999999887643
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=5.8 Score=53.08 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.+|++||.|+|||+++.+.+ +.+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA-k~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA-KCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhC
Confidence 47899999999999986544 4443
|
|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=14 Score=44.59 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+..++.+ ...|+||+.||+..|.+. |..++.. .....++||+..
T Consensus 74 ~ev~~~f~~fi~~--~~lVaHNa~FD~~fL~~el~r~g~~~~~~------------------------~~~~~~iDTl~l 127 (240)
T PRK05711 74 AEVADEFLDFIRG--AELIIHNAPFDIGFMDYEFALLGRDIPKT------------------------NTFCKVTDTLAM 127 (240)
T ss_pred HHHHHHHHHHhCC--CEEEEEccHHhHHHHHHHHHHhCCCCCcc------------------------cccCceeeHHHH
Confidence 4556677777755 457999999999888652 2111100 001236899988
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
+..+.|+. .++ |+.++. +++.+. .++ ....|..|+..+..+|..+.
T Consensus 128 ar~~~p~~-~~~---L~aL~~-~~gi~~------~~r--------~~H~AL~DA~~~A~v~~~l~ 173 (240)
T PRK05711 128 ARRMFPGK-RNS---LDALCK-RYGIDN------SHR--------TLHGALLDAEILAEVYLAMT 173 (240)
T ss_pred HHHHcCCC-CCC---HHHHHH-HCCCCC------CCC--------CCCCHHHHHHHHHHHHHHHH
Confidence 88788863 444 444443 333321 010 12356778888877765554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=82.96 E-value=4.8 Score=57.15 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCC
Q 000107 774 EVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGL 853 (2191)
Q Consensus 774 e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagL 853 (2191)
..+..+.+++|.+||+.-|.+.+..+.+.+... +..|..+|++.
T Consensus 495 ~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~------------------------------------~i~v~~Lsg~~ 538 (926)
T TIGR00580 495 KAVLDGKQVAVLVPTTLLAQQHFETFKERFANF------------------------------------PVTIELLSRFR 538 (926)
T ss_pred HHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC------------------------------------CcEEEEEeccc
Confidence 344567899999999998888887776654321 12378899999
Q ss_pred CHHHHHHHHHHhhcCCceEEEecccc-cccCCCCCceEEe
Q 000107 854 TVEEREVVETCYRKGLVRVLTATSTL-AAGVNLPARRVIF 892 (2191)
Q Consensus 854 s~~eR~~Ve~~Fr~G~ikVLVATstL-a~GVNLPav~VVI 892 (2191)
+..++..+.+.++.|.++|||+|..+ ...+.+..+.+||
T Consensus 539 ~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 539 SAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred cHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 99999999999999999999999844 4557777766554
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=82.64 E-value=6.5 Score=45.24 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 623 TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
+.+.+..+++.....+......+|||||+|.+... ..+.++..+
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~----~~~~Ll~~l 120 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEA----AANALLKTL 120 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHH----HHHHHHHHh
Confidence 34666666665544555677899999999998642 344555444
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=6.6 Score=52.68 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 625 Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+.+..++......+...+.+++||||+|++..
T Consensus 102 d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 102 DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred HHHHHHHHHHhhCcccCCceEEEEcCcccCCH
Confidence 34444554433344556789999999999864
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.40 E-value=8.1 Score=52.58 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEE-EEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMA-LLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVA 620 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~ka-L~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~Ii 620 (2191)
..+|++||.|+|||.++.+.+ +.+....... .--+.....| +.+....+..+..+.+. ..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA-~~l~c~~~~~~~~~c~~c~~c-------~~i~~~~~~d~~~i~~~---------~~-- 99 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA-KAVNCTTNDPKGRPCGTCEMC-------RAIAEGSAVDVIEMDAA---------SH-- 99 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhcCCCCCCCCCCCccCHHH-------HHHhcCCCCeEEEEecc---------cc--
Confidence 457999999999999986543 4443211100 0001111122 22222222222222110 00
Q ss_pred EEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 621 VCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 621 V~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
...+.+..++........+.+..+|||||+|+|..
T Consensus 100 -~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 100 -TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST 134 (585)
T ss_pred -CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH
Confidence 12233444444433344567789999999999864
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=82.13 E-value=5.1 Score=55.02 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=64.7
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.+..+.+++|-+||+.-|++.+..+.+.+...+ ..++.+||+++
T Consensus 280 ~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g------------------------------------i~v~lltg~~~ 323 (630)
T TIGR00643 280 AIEAGYQVALMAPTEILAEQHYNSLRNLLAPLG------------------------------------IEVALLTGSLK 323 (630)
T ss_pred HHHcCCcEEEECCHHHHHHHHHHHHHHHhcccC------------------------------------cEEEEEecCCC
Confidence 345688999999999988888887776553321 23889999999
Q ss_pred HHHHHHHHHHhhcCCceEEEeccccc-ccCCCCCceEEe
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTLA-AGVNLPARRVIF 892 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstLa-~GVNLPav~VVI 892 (2191)
..+|..+.+...+|...|+|+|..+- ..+.+....+||
T Consensus 324 ~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 324 GKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred HHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 99999999999999999999998654 456677766554
|
|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
Probab=82.10 E-value=2.6 Score=57.71 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=69.0
Q ss_pred HhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHH
Q 000107 1165 LVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244 (2191)
Q Consensus 1165 li~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RA 1244 (2191)
|+++--+..+++-|.+..++|..| +.+|-.....++..+...-.....+=|..| .||+||..+|
T Consensus 461 L~~~g~I~~i~DL~~L~~~~L~~l---------------~gfG~Ksa~~ll~~Ie~sk~~~l~R~l~al-gi~~IG~~~a 524 (665)
T PRK07956 461 LFEKGLIHDPADLFKLTAEDLLGL---------------EGFGEKSAQNLLDAIEKSKETSLARFLYAL-GIRHVGEKAA 524 (665)
T ss_pred HHHcCCCCCHHHHHhcCHHHHhcC---------------cCcchHHHHHHHHHHHHhhcCCHHHhhHhh-hccCcCHHHH
Confidence 444445556666666665554443 122323345566666654333333334444 8999999999
Q ss_pred HHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1245 R~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
+.|.+. |.|+++|..|+.++|.++ ++++..+|.+|++--
T Consensus 525 k~L~~~-f~sl~~l~~As~eeL~~i------------~GIG~~~A~sI~~ff 563 (665)
T PRK07956 525 KALARH-FGSLEALRAASEEELAAV------------EGVGEVVAQSIVEFF 563 (665)
T ss_pred HHHHHH-cCCHHHHHhCCHHHHhcc------------CCcCHHHHHHHHHHH
Confidence 999876 599999999999998877 578889999998753
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.94 E-value=9.1 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
..+|++||.|.|||.++.+ +.+.+.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHhhc
Confidence 3589999999999999865 334443
|
|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=21 Score=43.50 Aligned_cols=30 Identities=7% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHh
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH 1614 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~ 1614 (2191)
.+.+..+..++.+ ...|+||+.||+..|.+
T Consensus 135 ~evl~~f~~fl~~--~v~VaHNa~FD~~fL~~ 164 (257)
T PRK08517 135 KEVLEEFRLFLGD--SVFVAHNVNFDYNFISR 164 (257)
T ss_pred HHHHHHHHHHHCC--CeEEEECHHHHHHHHHH
Confidence 4566777778765 45899999999998865
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=81.75 E-value=2.2 Score=52.09 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+.+-|.+.|.......+..+++++|||||||+.. .+++..+...+.+++.|-
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiE 115 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVE 115 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEEC
Confidence 3555666665311124568999999999999876 445555544455566553
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=81.70 E-value=3.9 Score=52.39 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhcCCEE
Q 000107 544 LVYCASTSAGKSFVAEILMLRRLISTGKMA 573 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~iL~~ll~~g~ka 573 (2191)
.++.|..|||||+.+.-..+...++.|+++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 578999999999998864333344456543
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.67 E-value=12 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=19.9
Q ss_pred ccccCCeEEEEcCCCCchhHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvae 559 (2191)
++-..+-+++.+|+|+|||+++-
T Consensus 207 gidppkgvllygppgtgktl~ar 229 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCAR 229 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHH
Confidence 45667899999999999999974
|
|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
Probab=81.63 E-value=2.6 Score=57.63 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=53.5
Q ss_pred HHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCC-CCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGL-RTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1216 ~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~-~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
.++..||.|=+..+. |.|+|+|..++++||++|+ +++.||-.+..++|..+ ++++.+.|.+|++
T Consensus 420 aq~~~~l~hf~sr~a---l~I~GLG~k~i~~L~~~g~I~~~~Dl~~L~~~~L~~L------------~GfG~Ksa~nIl~ 484 (652)
T TIGR00575 420 AQRVERIKHFASRNA---MDIEGLGDKVIEQLFEKKLVRSVADLYALKKEDLLEL------------EGFGEKSAQNLLN 484 (652)
T ss_pred HHHHHHhHHhhcCCc---cCCCCcCHHHHHHHHHcCCcCCHHHHHhcCHHHHhhc------------cCccHHHHHHHHH
Confidence 366677777666554 7899999999999999975 89999999998888766 4677788888877
Q ss_pred HHH
Q 000107 1295 GAR 1297 (2191)
Q Consensus 1295 ~A~ 1297 (2191)
+..
T Consensus 485 ~Ie 487 (652)
T TIGR00575 485 AIE 487 (652)
T ss_pred HHH
Confidence 543
|
The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed. |
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
Probab=81.11 E-value=3.1 Score=56.82 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=66.7
Q ss_pred HhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHH
Q 000107 1165 LVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244 (2191)
Q Consensus 1165 li~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RA 1244 (2191)
|+++--+..+++-|.+..++|..|- .+|-..-+.++..+...-..-. ..++..+.|||||..+|
T Consensus 448 L~~~g~I~~~~Dl~~L~~~~L~~L~---------------GfG~Ksa~nIl~~Ie~sk~~~l-~r~L~aLgIpgVG~~~a 511 (652)
T TIGR00575 448 LFEKKLVRSVADLYALKKEDLLELE---------------GFGEKSAQNLLNAIEKSKEKPL-ARLLFALGIRHVGEVTA 511 (652)
T ss_pred HHHcCCcCCHHHHHhcCHHHHhhcc---------------CccHHHHHHHHHHHHHhccCcH-HHHHhhccCCCcCHHHH
Confidence 3444455566666666665555441 1221223334444432221111 24777789999999999
Q ss_pred HHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1245 R~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
+.|++. |.|+++|..|+.++|.++ ++++..+|.+|++--
T Consensus 512 k~L~~~-f~sl~~l~~As~eeL~~i------------~GIG~~~A~~I~~ff 550 (652)
T TIGR00575 512 KNLAKH-FGTLDKLKAASLEELLSV------------EGVGPKVAESIVNFF 550 (652)
T ss_pred HHHHHH-hCCHHHHHhCCHHHHhcC------------CCcCHHHHHHHHHHH
Confidence 999986 359999999999988776 568888999998753
|
The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed. |
| >COG3743 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.10 E-value=3.4 Score=44.31 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=37.1
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
=+|..|.|||.+-+..|...|+.|..+||..+..++..+
T Consensus 67 DDLt~I~GIGPk~e~~Ln~~GI~tfaQIAAwt~~di~~i 105 (133)
T COG3743 67 DDLTRISGIGPKLEKVLNELGIFTFAQIAAWTRADIAWI 105 (133)
T ss_pred ccchhhcccCHHHHHHHHHcCCccHHHHHhcCHHHHHHH
Confidence 478999999999999999999999999999999999987
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=81.05 E-value=2.5 Score=48.66 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+.+-|.+.+.. .+..++++++++|||||||+..- +++..+ ....+++.+
T Consensus 9 ~~~~~~~~~l~~-~v~~g~~i~I~G~tGSGKTTll~-aL~~~i-~~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWL-AVEARKNILISGGTGSGKTTLLN-ALLAFI-PPDERIITI 58 (186)
T ss_pred CCCHHHHHHHHH-HHhCCCEEEEECCCCCCHHHHHH-HHHhhc-CCCCCEEEE
Confidence 366777777764 46679999999999999998753 234333 333444444
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=80.67 E-value=23 Score=42.41 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=32.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH-----------hcCCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI-----------STGKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll-----------~~g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
...++.||.|+|||+.+...++.-.. ..+.+++|+.--- =..++.+++..+..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~ 65 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQ 65 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHh
Confidence 35689999999999988766654221 1456888887211 11234444544444
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=5.6 Score=49.63 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=14.0
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
-++++||+|+|||..+..
T Consensus 45 ~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred EEEeeCcCCCCHHHHHHH
Confidence 444589999999988654
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.58 E-value=2.5 Score=54.94 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=31.0
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCE
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM 572 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~k 572 (2191)
++.|.+.+....-....-+++.||||||||+.. ..+|..+.....+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~~~n 288 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTPERN 288 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCCCce
Confidence 666776665411123567899999999999874 5667666655555
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.50 E-value=2.2 Score=55.89 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=32.1
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+-|.+.|....-..+..++++||||||||+.. .++++.+...+.+++-|
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~Ti 252 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTAQINICSV 252 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEEe
Confidence 445555554311235678999999999999875 45666665555555443
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=80.22 E-value=6.7 Score=53.35 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhcc----CCeEEEEeccCCCCC-------CCCC
Q 000107 551 SAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEPL----GRHVRSYYGNQGGGS-------LPKD 616 (2191)
Q Consensus 551 GSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~l----g~~V~~~~G~~~~~~-------l~~~ 616 (2191)
|-|||+...-.+.-.++. .-+++|||+|. ..+.-++.+|.++...+ .+.|..+........ +...
T Consensus 706 GLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl-Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ 784 (1567)
T KOG1015|consen 706 GLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL-NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED 784 (1567)
T ss_pred cccceehhhHHHHHHHHhhccCCceEEEEcch-HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhc
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCcc-------------ceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEI-------------GIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l-------------~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~ 683 (2191)
..|.|.-++.+-.|... ......++ ++||.||+|.|-.. ...+...+.+++--
T Consensus 785 ggVmIiGYdmyRnLa~g--r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtk---------- 850 (1567)
T KOG1015|consen 785 GGVMIIGYDMYRNLAQG--RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTK---------- 850 (1567)
T ss_pred CCEEEEehHHHHHHhcc--cchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhh----------
Q ss_pred CCCCCCCCCCCCCCCCceEEEEecc
Q 000107 684 GENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 684 ~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
|.|+|+.|
T Consensus 851 -----------------RRI~LTGT 858 (1567)
T KOG1015|consen 851 -----------------RRIILTGT 858 (1567)
T ss_pred -----------------eeEEeecC
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=80.20 E-value=1.7 Score=52.94 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=30.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
+..+.+++++||||||||+.. -+++..+-....+++++--.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~ 164 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDP 164 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESS
T ss_pred cccceEEEEECCCccccchHH-HHHhhhccccccceEEeccc
Confidence 556899999999999999886 45566554444677776544
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
Probab=80.17 E-value=2.9 Score=57.27 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcC-CCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAG-LRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1216 ~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG-~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
.++..||.|=+.++. |.|+|+|..++++||++| ++++.||-.+..++|..+ ++++.+.|.+|++
T Consensus 433 aq~~~~l~hf~sr~a---l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l------------~gfG~Ksa~~ll~ 497 (665)
T PRK07956 433 AQLKERLIHFVSRNA---MDIDGLGEKIIEQLFEKGLIHDPADLFKLTAEDLLGL------------EGFGEKSAQNLLD 497 (665)
T ss_pred HHHHHHHHHhhcccc---cCCCCcCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcC------------cCcchHHHHHHHH
Confidence 356677777665544 789999999999999986 589999999888877665 4577778888777
Q ss_pred HHH
Q 000107 1295 GAR 1297 (2191)
Q Consensus 1295 ~A~ 1297 (2191)
+..
T Consensus 498 ~Ie 500 (665)
T PRK07956 498 AIE 500 (665)
T ss_pred HHH
Confidence 543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=80.15 E-value=4.9 Score=57.10 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~i 562 (2191)
...|+|+.||+|+|||.++...+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHH
Confidence 35799999999999999987544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=2.7 Score=54.18 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+...+.+++.||+|+|||+++-.
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHH
Confidence 44567899999999999988754
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=80.04 E-value=2 Score=52.56 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raL 582 (2191)
+.+++|.|+||+|||.... .++..+...|..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRGPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcCCCEEEEcCCchH
Confidence 4689999999999998876 6666777778888888665433
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=7.9 Score=49.01 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=56.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---c--CCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---T--GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~---~--g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~ 611 (2191)
++..|.-+.++||+|+|||..+...++...+. . +.+++||----..-.+ ++.++...+|+....
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~pe---Rl~~ia~~~g~d~~~-------- 190 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPD---RIVPIAERFGMDADA-------- 190 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHH---HHHHHHHHcCCChhh--------
Confidence 56677889999999999998887666554331 1 3589999753221112 122222223332111
Q ss_pred CCCCCCceEEE---chHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 612 SLPKDTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 612 ~l~~~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
... +|.+. +++.+..++..+.....-..+++||||=+--+
T Consensus 191 -~l~--~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 191 -VLD--NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred -hcC--eEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 111 13333 44554444443221111245899999997654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2191 | ||||
| 2xo7_A | 580 | Crystal Structure Of A Da:o-Allylhydroxylamine-Dc B | 9e-61 | ||
| 2xy6_A | 581 | Crystal Structure Of A Salicylic Aldehyde Basepair | 1e-60 | ||
| 2xy5_A | 581 | Crystal Structure Of An Artificial Salen-Copper Bas | 1e-60 | ||
| 2xy7_A | 580 | Crystal Structure Of A Salicylic Aldehyde Base In T | 1e-60 | ||
| 2y1i_A | 580 | Crystal Structure Of A S-Diastereomer Analogue Of T | 6e-60 | ||
| 3hp6_A | 580 | Crystal Structure Of Fragment Dna Polymerase I From | 2e-59 | ||
| 3pv8_A | 592 | Crystal Structure Of Bacillus Dna Polymerase I Larg | 2e-59 | ||
| 2hhw_A | 580 | Ddttp:o6-Methyl-Guanine Pair In The Polymerase Acti | 2e-59 | ||
| 2hvh_A | 580 | Ddctp:o6meg Pair In The Polymerase Active Site (0 P | 2e-59 | ||
| 3eyz_A | 580 | Cocrystal Structure Of Bacillus Fragment Dna Polyme | 3e-59 | ||
| 4dqi_A | 592 | Ternary Complex Of Bacillus Dna Polymerase I Large | 5e-59 | ||
| 3tan_A | 592 | Crystal Structure Of Bacillus Dna Polymerase I Larg | 8e-59 | ||
| 1l3s_A | 580 | Crystal Structure Of Bacillus Dna Polymerase I Frag | 9e-59 | ||
| 3bdp_A | 580 | Dna Polymerase IDNA COMPLEX Length = 580 | 9e-59 | ||
| 1u45_A | 580 | 8oxoguanine At The Pre-Insertion Site Of The Polyme | 9e-59 | ||
| 2hhq_A | 580 | O6-Methyl-Guanine:t Pair In The Polymerase-10 Basep | 9e-59 | ||
| 1lv5_A | 580 | Crystal Structure Of The Closed Conformation Of Bac | 1e-58 | ||
| 3ht3_A | 579 | Crystal Structure Of Fragment Dna Polymerase I From | 2e-58 | ||
| 4dqq_A | 592 | Ternary Complex Of Bacillus Dna Polymerase I Large | 3e-58 | ||
| 3hpo_A | 580 | Crystal Structure Of Fragment Dna Polymerase I From | 1e-57 | ||
| 1bgx_T | 832 | Taq Polymerase In Complex With Tp7, An Inhibitory F | 6e-52 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 9e-51 | ||
| 1taq_A | 832 | Structure Of Taq Dna Polymerase Length = 832 | 1e-50 | ||
| 1qtm_A | 539 | Ddttp-trapped Closed Ternary Complex Of The Large F | 4e-50 | ||
| 3ktq_A | 540 | Crystal Structure Of An Active Ternary Complex Of T | 5e-50 | ||
| 2ktq_A | 538 | Open Ternary Complex Of The Large Fragment Of Dna P | 5e-50 | ||
| 1qss_A | 539 | Ddgtp-Trapped Closed Ternary Complex Of The Large F | 5e-50 | ||
| 4ktq_A | 539 | Binary Complex Of The Large Fragment Of Dna Polymer | 5e-50 | ||
| 5ktq_A | 543 | Large Fragment Of Taq Dna Polymerase Bound To Dctp | 5e-50 | ||
| 1kfs_A | 605 | Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Muta | 1e-49 | ||
| 1dpi_A | 605 | Structure Of Large Fragment Of Escherichia Coli Dna | 1e-49 | ||
| 1kln_A | 605 | Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) Muta | 2e-49 | ||
| 1d8y_A | 605 | Crystal Structure Of The Complex Of Dna Polymerase | 2e-49 | ||
| 3po4_A | 540 | Structure Of A Mutant Of The Large Fragment Of Dna | 2e-49 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 1e-45 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 1e-04 | ||
| 4dle_A | 540 | Ternary Structure Of The Large Fragment Of Taq Dna | 2e-45 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 1e-43 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 4e-29 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 5e-29 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 4e-23 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 5e-23 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 2e-14 | ||
| 1zyq_A | 698 | T7 Dna Polymerase In Complex With 8og And Incoming | 1e-06 | ||
| 1t7p_A | 698 | T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A | 2e-06 | ||
| 2ajq_A | 704 | Structure Of Replicative Dna Polymerase Provides In | 2e-06 |
| >pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 | Back alignment and structure |
|
| >pdb|2XY6|A Chain A, Crystal Structure Of A Salicylic Aldehyde Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 581 | Back alignment and structure |
|
| >pdb|2XY5|A Chain A, Crystal Structure Of An Artificial Salen-Copper Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 581 | Back alignment and structure |
|
| >pdb|2XY7|A Chain A, Crystal Structure Of A Salicylic Aldehyde Base In The Pre-Insertion Site Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 | Back alignment and structure |
|
| >pdb|2Y1I|A Chain A, Crystal Structure Of A S-Diastereomer Analogue Of The Spore Photoproduct In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 | Back alignment and structure |
|
| >pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 | Back alignment and structure |
|
| >pdb|3PV8|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large Fragment Bound To Dna And Ddttp-Da In Closed Conformation Length = 592 | Back alignment and structure |
|
| >pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 | Back alignment and structure |
|
| >pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) Length = 580 | Back alignment and structure |
|
| >pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 | Back alignment and structure |
|
| >pdb|4DQI|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment, Dna Duplex, And Dctp (Paired With Dg Of Template) Length = 592 | Back alignment and structure |
|
| >pdb|3TAN|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large Fragment Bound To Duplex Dna With Cytosine-Adenine Mismatch At (N-1) Position Length = 592 | Back alignment and structure |
|
| >pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. Length = 580 | Back alignment and structure |
|
| >pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX Length = 580 | Back alignment and structure |
|
| >pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site Length = 580 | Back alignment and structure |
|
| >pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position Length = 580 | Back alignment and structure |
|
| >pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 | Back alignment and structure |
|
| >pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 | Back alignment and structure |
|
| >pdb|4DQQ|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large Fragment E658a, Dna Duplex, And Rctp (Paired With Dg Of Template) In Presence Of Mg2+ Length = 592 | Back alignment and structure |
|
| >pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 | Back alignment and structure |
|
| >pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab Length = 832 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 | Back alignment and structure |
|
| >pdb|1QTM|A Chain A, Ddttp-trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 | Back alignment and structure |
|
| >pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 540 | Back alignment and structure |
|
| >pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 | Back alignment and structure |
|
| >pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 | Back alignment and structure |
|
| >pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 | Back alignment and structure |
|
| >pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp Length = 543 | Back alignment and structure |
|
| >pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Mutant/dna Complex Length = 605 | Back alignment and structure |
|
| >pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP Length = 605 | Back alignment and structure |
|
| >pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 | Back alignment and structure |
|
| >pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 | Back alignment and structure |
|
| >pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In Complex With A Blunt-Ended Dna And Ddatp Length = 540 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|4DLE|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna Polymerase: 4- Fluoroproline Variant Length = 540 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp Length = 698 | Back alignment and structure |
|
| >pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A Nucleoside Triphosphate, And Its Processivity Factor Thioredoxin Length = 698 | Back alignment and structure |
|
| >pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts Into The Mechanisms For Processivity, Frameshifting And Editing Length = 704 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 652 bits (1683), Expect = 0.0
Identities = 183/809 (22%), Positives = 326/809 (40%), Gaps = 116/809 (14%)
Query: 503 LDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL 561
+ + LPS + I KKRGI KL P Q E + G+L+ L+ + T +GK+ +AE+
Sbjct: 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVK-KGLLEGNRLLLTSPTGSGKTLIAEMG 66
Query: 562 MLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVA 620
++ L+ G A+ V P ++ EK + E +G V G+ + K+ +
Sbjct: 67 IISFLLKNGGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAWLKNYDII 125
Query: 621 VCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSD 680
+ T EK +SL E L+E+ V+DELH + D RG ++E + + +
Sbjct: 126 ITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAKR-------- 175
Query: 681 SSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVG 740
++ +SAT+ N +A WL A TN+RPVPL E +
Sbjct: 176 -------------------RNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYP 216
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
KK + D I+ + + + VL+F +SRK ESTA ++
Sbjct: 217 E---RKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIA 273
Query: 801 KFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860
++ S++ ++ +I +D + + +L+ + GVAYHHAGL+ R++
Sbjct: 274 NYMNFVSLD----ENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329
Query: 861 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-------GRDFIDGTRYRQMAGR 913
+E +R+ ++V+ AT TLAAGVNLPAR VI D I Y+QM+GR
Sbjct: 330 IEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389
Query: 914 AGRTGIDTKGESMLICKPEEVKKIMG--LLNESCPPLHSCLSEDKNGMTHAILEVVAGGI 971
AGR G D GES+++ + +E + + P+ S L ++ T +L +++
Sbjct: 390 AGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTF-LLGILSAEG 448
Query: 972 VQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAA 1031
+ + + + +LL Q V ++RWL F++ E+ ++ T G+
Sbjct: 449 NLSEKQLENFAYESLLAK----QLVDVYFDRAIRWLLEHSFIK--EEGNTFALTNFGKRV 502
Query: 1032 FGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSAL 1091
+ P + I+ L + + LHL+ + P + EL L
Sbjct: 503 ADLYINPFTADIIRKGLEGHKA-SCELAYLHLLAFTPDG-----PLVSVGRNEEEELIEL 556
Query: 1092 DQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLR 1151
+ + ++ + EPY + +
Sbjct: 557 LEDLDCELLIEEPY---------------------------------------EEDEYSL 577
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDL 1211
VALI+ + E + + + G ++ + E L +
Sbjct: 578 YINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEH 637
Query: 1212 EGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271
+ RV G++ E++EL I V RAR LY G++ + ++ L
Sbjct: 638 ADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNP-DKVKNLLG 696
Query: 1272 ESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300
+ + +K+ A +++
Sbjct: 697 Q--------------KLGEKVVQEAARLL 711
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 614 bits (1586), Expect = 0.0
Identities = 191/808 (23%), Positives = 339/808 (41%), Gaps = 101/808 (12%)
Query: 503 LDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL 561
+ + + I S K+RGI YP Q E L G+L+ +N + T++GK+ +AEI
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALK-SGILEGKNALISIPTASGKTLIAEIA 59
Query: 562 MLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVA 620
M+ R+++ G A+ ++P ++ EK + + E +G V G+ +
Sbjct: 60 MVHRILTQGGKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDII 118
Query: 621 VCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSD 680
+ T EK +SL+ + ++ I+V DE+H++ ++RG LE++L +
Sbjct: 119 IATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG-------- 168
Query: 681 SSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVG 740
QI+G+SAT+ N +A+WL A L +++RPV L +
Sbjct: 169 ------------------KAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQ 210
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
+ + + R EL + +++ LIF + R+ E A +S
Sbjct: 211 GFVTWEDGSIDR------------FSSWEELVYDAIRKKKGALIFVNMRRKAERVALELS 258
Query: 801 KFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860
K +K + E + D+L P + L + + GVA+HHAGL +ER +
Sbjct: 259 KKVKS-----LLTKPEIRALNELADSLEENP--TNEKLAKAIRGGVAFHHAGLGRDERVL 311
Query: 861 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI----GRDFIDGTRYRQMAGRAGR 916
VE +RKG+++ + AT TL+AG+N PA RVI R G + I QM GRAGR
Sbjct: 312 VEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371
Query: 917 TGIDTKGESMLICKPEEVKKIM-GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTA 975
D GE +++ ++ +++M + L S LS + N + +L ++A T
Sbjct: 372 PKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESN-LRSQVLALIATFGYSTV 430
Query: 976 EDIHRYVRCTLLN-STKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGS 1034
E+I +++ T K + + ++ L +L +F+E + + K+ LG
Sbjct: 431 EEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRP-LSLGIRTAKL 489
Query: 1035 SLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQS 1094
+ P + + D + + HL+ L+ I + F L
Sbjct: 490 YIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDI-----TPFNYSKREFERLEEEYYE 544
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
+++ +PY+ + + +
Sbjct: 545 FKDRLYFDDPYI-----------------------------------SGYDPYLERKFFR 569
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL 1214
F AL+L + E P E+ E + V G + + E A + + LG Y++
Sbjct: 570 AFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDY 629
Query: 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESS 1274
+ + RV +G+R E++ L +P V RARALY +G R+ I++A E++K
Sbjct: 630 LETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGV 689
Query: 1275 SWIAEAQRRVQLGVAKKIKNGARKIVLE 1302
+ + LG KI RK L+
Sbjct: 690 KTVEAIFK--FLGKNVKISEKPRKSTLD 715
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 589 bits (1521), Expect = 0.0
Identities = 196/815 (24%), Positives = 329/815 (40%), Gaps = 133/815 (16%)
Query: 504 DLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILML 563
+L+ + S I K+ GI +L+P Q E + V +NL+ T+AGK+ +AE+ M+
Sbjct: 5 ELAESISSYAVGILKEEGIEELFPPQAEAVE--KVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 564 RRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVC 622
R I GK +L V+P ++ EK E + E +G + G+ + D + V
Sbjct: 63 REAIKGGK-SLYVVPLRALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVT 120
Query: 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682
T EKA+SL+ + + +V+DE+H++ + RG LE+L+TK+R
Sbjct: 121 TSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-------- 170
Query: 683 SGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742
L+++G+SAT PNV +A+WL A Y +++RPVPL E +
Sbjct: 171 ---------------KALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGT 215
Query: 743 I--YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
+ + R + EL +E V E VL+F S+R+G E TA +S
Sbjct: 216 LELFDGAFSTSRRV------------KFEELVEECVAENGGVLVFESTRRGAEKTAVKLS 263
Query: 801 KFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860
K+ N + L + L E + G A+HHAGL +R V
Sbjct: 264 AITAKYVENEGLEKAI----------LEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313
Query: 861 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF---IDGTRYRQMAGRAGRT 917
VE +R+G ++V+ AT TLAAGVNLPARRVI R + I + Y+QMAGRAGR
Sbjct: 314 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373
Query: 918 GIDTKGESMLICK-PEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
G+D +GE+++I + + + + S L + + + L ++ G +T E
Sbjct: 374 GMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETH-LRFHSLSIICDGYAKTLE 432
Query: 977 DIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSL 1036
++ + T + + + +R L + + + + T LG +
Sbjct: 433 ELEDFFADTFF-FKQNEISLSYELERVVRQLENWGMV---VEAAHLAPTKLGSLVSRLYI 488
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPI-NVEVEPDWELYYERFLELSALDQSV 1095
P I D LSR + LHL+ + + + V E L
Sbjct: 489 DPLTGFIFHDVLSRMELSDI--GALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYY 546
Query: 1096 GNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKR 1155
+ V + +
Sbjct: 547 PSDFSVEYDWFLS----------------------------------------------E 560
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLI 1215
AL L ++E E+C + +A G ++ + E A ++ ++ E +G +
Sbjct: 561 VKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSV---- 616
Query: 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSS 1275
+ R+ GV+ E++EL I ++ RAR LY AG+R I
Sbjct: 617 SGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHREKVA--------- 667
Query: 1276 WIAEAQRRVQLGVAKKIKN--GARKIVLEKAEEAR 1308
+ G+A+++ + + E A
Sbjct: 668 ------SLIGRGIAERVVEGISVKSLNPESAAALE 696
|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Length = 605 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-113
Identities = 176/667 (26%), Positives = 291/667 (43%), Gaps = 130/667 (19%)
Query: 1530 EIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRI 1589
+ GL+ E Y+ + H D Q+ ++ + +
Sbjct: 44 NLVGLSFAIEPGVAAYIPVA------HDYLD--------------APDQISR-ERALELL 82
Query: 1590 GEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHL 1649
++E K N+K +L + + ++ G +F
Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANYGIELR-----------------GIAF-------- 117
Query: 1650 KDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMR------RA 1703
D + S+IL + +++ ++ L + +G+ KNQ+
Sbjct: 118 ----DTMLESYILNSV---AGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170
Query: 1704 AHNGCCRRVAQTRALCSVLWKLLVSEELIEALL-NIEIPLVNVLADMELWGIGVDMEGCL 1762
A T L +W L + + NIE+PLV VL+ +E G+ +D +
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230
Query: 1763 QARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQ-HPSTD 1821
L +L LEKKA+ +AG +F+L + + +L+ + + K PST
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLK---KTPGGAPSTS 287
Query: 1822 KHCLDLLRHEHPIVPVIKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQT 1877
+ L+ L ++P+ VI E+R LAKL + T L I+ T + +H + Q
Sbjct: 288 EEVLEELALDYPLPKVILEYRGLAKLKS-TYTDKL-----PLMINPKTGR--VHTSYHQA 339
Query: 1878 STATGRLSMEEPNLQCVEHMVEFKMSN-----EDIYGGNAEVDHCKINARDFFIPSQENW 1932
TATGRLS +PNLQ N E+ G +I R FI E++
Sbjct: 340 VTATGRLSSTDPNLQ-----------NIPVRNEE---GR------RI--RQAFIA-PEDY 376
Query: 1933 ILLAADYSQIELRLMAHFSKDPALI-----GLLSKPHGDVFTMIAARWTGRSEDSVGSQE 1987
++++ADYSQIELR+MAH S+D L+ G D+ AA G ++V S++
Sbjct: 377 VIVSADYSQIELRIMAHLSRDKGLLTAFAEGK------DIHRATAAEVFGLPLETVTSEQ 430
Query: 1988 RDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKG 2047
R K + +G++YGM L+ QLN EA++ + + +PGV ++ + ++G
Sbjct: 431 RRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQG 490
Query: 2048 YVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYK 2107
YVE+L GR+ +L IK N ++ A+R A+N+ QG+AADIIK AMI + + +
Sbjct: 491 YVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWL------ 544
Query: 2108 PDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKI 2167
Q + R R+++QVHDELV EV + + + ME+ L VPLLV++
Sbjct: 545 ---------QAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV 595
Query: 2168 QVGSTWG 2174
G W
Sbjct: 596 GSGENWD 602
|
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ... Length = 592 | Back alignment and structure |
|---|
Score = 371 bits (954), Expect = e-112
Identities = 184/604 (30%), Positives = 269/604 (44%), Gaps = 103/604 (17%)
Query: 1587 KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSP 1646
+ + +K ++ K LK G+E G SF
Sbjct: 71 PQFVAWLGDETKKKSMFDSKRAAVALKW-----------------KGIELCGVSF----- 108
Query: 1647 VHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQM---RRA 1703
D+ + +++L P ++ K + G+ +
Sbjct: 109 -------DLLLAAYLLDPAQ---GVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPV 158
Query: 1704 AHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQ 1763
R+ A L L E L+ +E PL ++LA+ME G+ VD + Q
Sbjct: 159 LAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQ 218
Query: 1764 ARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKH 1823
L ++L +E++ Y LAG +F++ + + +L+ L+LP+ + K K ST
Sbjct: 219 MGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK---KTKTGYSTSAD 275
Query: 1824 CLDLLRHEHPIVPVIKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQTST 1879
L+ L H IV I +R L KL + T L L + +T+K +H + Q T
Sbjct: 276 VLEKLAPYHEIVENILHYRQLGKLQS-TYIEGL-----LKVVRPATKK--VHTIFNQALT 327
Query: 1880 ATGRLSMEEPNLQCVEHMVEFKMSN-----EDIYGGNAEVDHCKINARDFFIPSQENWIL 1934
TGRLS EPNLQ N E+ G KI R F+PS+ +W++
Sbjct: 328 QTGRLSSTEPNLQ-----------NIPIRLEE---GR------KI--RQAFVPSESDWLI 365
Query: 1935 LAADYSQIELRLMAHFSKDPALI-----GLLSKPHGDVFTMIAARWTGRSEDSVGSQERD 1989
AADYSQIELR++AH ++D L+ L D+ T A SED V R
Sbjct: 366 FAADYSQIELRVLAHIAEDDNLMEAFRRDL------DIHTKTAMDIFQVSEDEVTPNMRR 419
Query: 1990 QTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYV 2049
Q K + YGI+YG+ L++ LN S EA E I+ + SFPGV ++ V QKGYV
Sbjct: 420 QAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYV 479
Query: 2050 ESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPD 2109
+L R+R+L I N +S A+R A+N+ QGSAADIIK AMI++++ + +
Sbjct: 480 TTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARL------KE 533
Query: 2110 SSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQV 2169
L A LLLQVHDEL+LE ++ LV + ME A L VPL V
Sbjct: 534 ERLQA---------HLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY 584
Query: 2170 GSTW 2173
GSTW
Sbjct: 585 GSTW 588
|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Length = 832 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-110
Identities = 156/479 (32%), Positives = 229/479 (47%), Gaps = 66/479 (13%)
Query: 1709 CRRVAQTRALCSVLWKLLVSEELIEALL-NIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R A + L + LW L EE + L +E PL VLA ME G+ +D+
Sbjct: 403 GERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLE 462
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
+ +++ LE + + LAG F+L + + VL+ L LP K + ST L+
Sbjct: 463 VAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGK-RSTSAAVLEA 521
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQTSTATGR 1883
LR HPIV I ++R L KL + T L I T + LH + QT+TATGR
Sbjct: 522 LREAHPIVEKILQYRELTKLKS-TYIDPL-----PDLIHPRTGR--LHTRFNQTATATGR 573
Query: 1884 LSMEEPNLQCVEHMVEFKMSNEDIYG--GNAEVDHCKINARDFFIPSQENWILLAADYSQ 1941
LS +PNLQ N + G +I R FI +E W+L+A DYSQ
Sbjct: 574 LSSSDPNLQ-----------NIPVRTPLGQ------RI--RRAFIA-EEGWLLVALDYSQ 613
Query: 1942 IELRLMAHFSKDPALI-----GLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIY 1996
IELR++AH S D LI G D+ T A+ G ++V R K + +
Sbjct: 614 IELRVLAHLSGDENLIRVFQEGR------DIHTETASWMFGVPREAVDPLMRRAAKTINF 667
Query: 1997 GILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRK 2056
G+LYGM + LS++L EA+ I+ + SFP V +W+ + ++GYVE+L GR+
Sbjct: 668 GVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRR 727
Query: 2057 RFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANF 2116
R++ ++ + A+R A N QG+AAD++K+AM+ +
Sbjct: 728 RYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF------------------ 769
Query: 2117 QMLKG-RCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWG 2174
L+ R+LLQVHDELVLE + L ++ ME L VPL V++ +G W
Sbjct: 770 PRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 828
|
| >4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* 3rrh_A* 4dfm_A* 4dfp_A* 1ktq_A* 5ktq_A* ... Length = 540 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-110
Identities = 154/475 (32%), Positives = 230/475 (48%), Gaps = 60/475 (12%)
Query: 1709 CRRVAQTRALCSVLWKLLVSEELIEALL-NIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R A + L + LW L EE + L +E PL VLA ME G+ +D+
Sbjct: 111 GERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLE 170
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
+ +++ LE + + LAG F+L + + VL+ L LP K + ST L+
Sbjct: 171 VAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGK-RSTSAAVLEA 229
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCT----LGSICSLARISMSTQKYTLHGHWLQTSTATGR 1883
LR HPIV I ++R L KL + T L I T + LH + QT+TATGR
Sbjct: 230 LREAHPIVEKILQYRELTKLKS-TYIDPL-----PDLIHPRTGR--LHTRFNQTATATGR 281
Query: 1884 LSMEEPNLQCVEHMVEFKMSN-----EDIYGGNAEVDHCKINARDFFIPSQENWILLAAD 1938
LS +PNLQ N G +I R FI +E W+L+A D
Sbjct: 282 LSSSDPNLQ-----------NIPVRTPL---GQ------RI--RRAFIA-EEGWLLVALD 318
Query: 1939 YSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGI 1998
YSQIELR++AH S D LI + + D+ T A+ G ++V R K + +G+
Sbjct: 319 YSQIELRVLAHLSGDENLIRVFQE-GRDIHTETASWMFGVPREAVDPLMRRAAKTINFGV 377
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
LYGM + LS++L EA+ I+ + SFP V +W+ + ++GYVE+L GR+R+
Sbjct: 378 LYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRY 437
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
+ ++ + A+R A N QG+AAD++K+AM+ + ++
Sbjct: 438 VPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP-----------------RL 480
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
+ R+LLQVHDELVLE + L ++ ME L VPL V++ +G W
Sbjct: 481 EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDW 535
|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Length = 698 | Back alignment and structure |
|---|
Score = 302 bits (774), Expect = 1e-87
Identities = 86/494 (17%), Positives = 157/494 (31%), Gaps = 54/494 (10%)
Query: 1701 RRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALL----NIEIPLVNVLADMELWGIGV 1756
RR R L + E +P + ++ GI
Sbjct: 234 EELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFK 293
Query: 1757 DMEGCLQARNL----LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812
+ Q L + + + F+ + I L +P
Sbjct: 294 KPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKY--- 350
Query: 1813 KGKQHPSTDKHCLDLLRHE----HPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKY 1868
K P D L+ +R + + +IKE+ + K + + + R K
Sbjct: 351 TDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGK- 409
Query: 1869 TLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPS 1928
+HG TGR + PNL + + + YG + +
Sbjct: 410 -IHGSVNPNGAVTGRATHAFPNLAQIP-----GVRSP--YG--EQCRAAFGAEHHLDGIT 459
Query: 1929 QENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHG-DVFTMIAARWTGRSEDSVGSQE 1987
+ W+ D S +ELR +AHF +G ++ +++ +
Sbjct: 460 GKPWVQAGIDASGLELRCLAHFMARFD--------NGEYAHEILNGDIHTKNQIAAELPT 511
Query: 1988 RDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLH----VAVSSC 2043
RD K IYG LYG G + + + KE K F + P +A+ V S
Sbjct: 512 RDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESS 571
Query: 2044 HQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVG 2103
+ +K ++R++ + ++ A+N++ Q + A I K+ +I ++V
Sbjct: 572 QWVAGEQQVKWKRRWIKGLDGRKVHV--RSPHAALNTLLQSAGALICKLWIIKTEEMLVE 629
Query: 2104 GVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS-LVQKCMESAAL---L 2159
K G + VHDE+ + I + V Q+ M
Sbjct: 630 KGLKHGWD---------GDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNF 680
Query: 2160 LVPLLVKIQVGSTW 2173
L + ++G W
Sbjct: 681 RCLLDTEGKMGPNW 694
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 5e-44
Identities = 118/574 (20%), Positives = 220/574 (38%), Gaps = 110/574 (19%)
Query: 455 HERKLDISSQGIDSITSDSPTNVIKK------PVGNEKSDEAGTPSSSGMLKDCL----- 503
H ++ QG S+ +DS + + N ++ + +
Sbjct: 3 HHHHENLYFQGAASMLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVAL 62
Query: 504 --DLSSWLPSEICSIYKKRGIS-KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEI 560
+ +E + + R L P+Q + + + +++ A TSAGK+ VAE
Sbjct: 63 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTA--ISCIDRGESVLVSAHTSAGKTVVAEY 120
Query: 561 LMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVA 620
+ + L + + P ++ +K L +G G ++ D
Sbjct: 121 AIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT-------GDITINPDAGCL 172
Query: 621 VCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSD 680
V T E S++ R E + E+ ++ DE+H + D+ RG + E + L
Sbjct: 173 VMTTEILRSMLYRGSE--VMREVAWVIFDEVHYMRDKERGVVWEETIILLP--------- 221
Query: 681 SSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLE 734
++ V +SAT+PN A+W+ + TNFRP PL+
Sbjct: 222 -----------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQ 264
Query: 735 EYI------------------------KVGNAIYSKKMDVVRTI---------LTAANLG 761
Y+ K +I ++ D + +
Sbjct: 265 HYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAK 324
Query: 762 GKDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820
G I ++ + ++ + V++F S++ CE A +SK +SD E +
Sbjct: 325 GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL-------DFNSDDEKEAL 377
Query: 821 TSAID-ALRRCPAGLDPVLE-----ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
T + A+ P + + L G+ HH+GL +EV+E +++G ++VL
Sbjct: 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 437
Query: 875 ATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTR--YRQMAGRAGRTGIDTKGESMLICK 930
AT T + G+N+PA+ V+F R G+ F + Y QM+GRAGR G+D +G +++
Sbjct: 438 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497
Query: 931 P-EEVKKIMGLLNESCPPLHSCLSEDKNGMTHAI 963
E + G++ L S N + + +
Sbjct: 498 EKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 531
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 173 bits (438), Expect = 2e-43
Identities = 107/491 (21%), Positives = 197/491 (40%), Gaps = 96/491 (19%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583
L P+Q + + + +++ A TSAGK+ VAE + + L + + P ++
Sbjct: 184 TLDPFQDTA--ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALS 240
Query: 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI 643
+K L +G G ++ D V T E S++ R E + E+
Sbjct: 241 NQKYRELLAEFGDVGLMT-------GDITINPDAGCLVMTTEILRSMLYRGSE--VMREV 291
Query: 644 GIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV 703
++ DE+H + D+ RG + E + L ++ V
Sbjct: 292 AWVIFDEVHYMRDKERGVVWEETIILLP--------------------------DKVRYV 325
Query: 704 GMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYI-------------------- 737
+SAT+PN A+W+ + TNFRP PL+ Y+
Sbjct: 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFRE 385
Query: 738 ----KVGNAIYSKKMDVVRTI---------LTAANLGGKDPDHIVELCDEVVQEG-HSVL 783
K +I ++ D + + G I ++ + ++ + V+
Sbjct: 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVI 445
Query: 784 IFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAID-ALRRCPAGLDPVLE--- 839
+F S++ CE A +SK +SD E +T + A+ P + +
Sbjct: 446 VFSFSKRDCEELALKMSKL-------DFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 498
Query: 840 --ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR- 896
L G+ HH+GL +EV+E +++G ++VL AT T + G+N+PA+ V+F R
Sbjct: 499 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 558
Query: 897 -IGRDFIDGTR--YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCP-PLHSCL 952
G+ F + Y QM+GRAGR G+D +G +++ + ++ + + L S
Sbjct: 559 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAF 618
Query: 953 SEDKNGMTHAI 963
N + + +
Sbjct: 619 HLGYNMILNLM 629
|
| >3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Length = 1172 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-35
Identities = 54/442 (12%), Positives = 99/442 (22%), Gaps = 108/442 (24%)
Query: 1804 KLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISM 1863
L G G + +K I + + L ++
Sbjct: 711 TLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPR----AVIRHPDYDE 766
Query: 1864 STQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARD 1923
+ + T T R NA D +
Sbjct: 767 EGLYGAILPQVVTAGTITRRAVEPTWLTAS-----------------NARPDRVGSELKA 809
Query: 1924 FFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSV 1983
+ L+ AD EL + A G + T+ + G S
Sbjct: 810 MVQAP-PGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWM-TLQGRKSRGTDLHSK 867
Query: 1984 GSQE----RDQTKRLIYGILYGMGPNTLSEQL-----NCSSNEAKEKIKSFKSSFPGVAS 2034
+ R+ K YG +YG G L + EA EK + ++ G+
Sbjct: 868 TATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRW 927
Query: 2035 W-----------LHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQ------- 2076
+ + G++ RK + K+ +
Sbjct: 928 YRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTE 987
Query: 2077 -----------------------------------------AVNSICQGSAADIIKIAMI 2095
VN + Q SA D + + ++
Sbjct: 988 SEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLV 1047
Query: 2096 NIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQ--KCM 2153
+ + + R + +HDE+ V A +Q +
Sbjct: 1048 AMKWLF---------------EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLL 1092
Query: 2154 ESAALLLVPLLVKIQVGSTWGS 2175
L + + S
Sbjct: 1093 TRCMFAYKLGLNDLPQSVAFFS 1114
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-23
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 8/197 (4%)
Query: 761 GGKDPDHIVELCDEVVQEGH-SVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G E+ + + + +++F S+K CE A + +
Sbjct: 317 DGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEK 376
Query: 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
+ + R + L G+A HH GL +E++E + KG ++VL AT T
Sbjct: 377 SITRLKKEDRDLPQILKTRS-LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETF 435
Query: 880 AAGVNLPARRVIFRQPRI----GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935
A G+NLP R VIF R G + + QMAGRAGR G+D+ G +++ +
Sbjct: 436 AMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS 495
Query: 936 K--IMGLLNESCPPLHS 950
+ L S
Sbjct: 496 IATFKEVTMGVPTRLQS 512
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 7e-12
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 50/231 (21%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583
+L +Q E V + Q ++ A TSAGK+ VAE + + P ++
Sbjct: 39 ELDTFQKEA--VYHLEQGDSVFVAAHTSAGKTVVAE-YAIAMAHRNMTKTIYTSPIKALS 95
Query: 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEG-R 639
+K R + + + G + D + A C I L + +
Sbjct: 96 NQKF-----------RDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADL 144
Query: 640 LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699
+ ++ ++ DE+H V DQ+RG + E ++ L
Sbjct: 145 IRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP--------------------------QH 178
Query: 700 LQIVGMSATMPNVAAVADWLQA------ALYETNFRPVPLEEYIKVGNAIY 744
++ + +SAT+PN A+W+ + T RPVPLE I +
Sbjct: 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELI 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 4e-11
Identities = 120/769 (15%), Positives = 237/769 (30%), Gaps = 268/769 (34%)
Query: 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSR 789
V + ++ + + D+ ++IL+ + DHI+ D V G L +
Sbjct: 23 SVFEDAFVDNFDCKDVQ--DMPKSILSKEEI-----DHIIMSKDAV--SGTLRLFWTLLS 73
Query: 790 KGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYH 849
K V KF++ V + +F + S I +R P + + Y
Sbjct: 74 KQ----EEMVQKFVE----EVLRINYKF--LMSPIKTEQR-----QPSMMTRM-----Y- 112
Query: 850 HAGLTVEEREVVET---CYRKGLV-R---VLTATSTLAAGVNL-PARRVIFRQPRIGRDF 901
+E+R+ + + K V R L L + L PA+ V+
Sbjct: 113 -----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LELRPAKNVL---------- 154
Query: 902 IDGTRYRQMAGRAGRTGIDTKGESML---ICKPEEVKKIMGL----LNESCPPLHSCLSE 954
IDG + G G++ + +C +V+ M LN L +C S
Sbjct: 155 IDG-----VLG---------SGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSP 195
Query: 955 DKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLE 1014
+ +LE ++Q + + + + + S Q L R+ L+
Sbjct: 196 E------TVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-----RRLLK 239
Query: 1015 WNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAR--EGFVLASDLH---LVYLSTP 1069
K Y E L+VL ++ A+ F +L L+ +T
Sbjct: 240 S----KPY----------------ENCLLVLLNVQNAKAWNAF----NLSCKILL--TT- 272
Query: 1070 INVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLH 1129
R + V + + + + + H
Sbjct: 273 --------------R-------FKQVTDFLSAATTTHISLDH------------------ 293
Query: 1130 GKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQA-L 1188
+ L+ + + L Q+ P EV T ++ +
Sbjct: 294 ----------HSMTLTPDEVKSLL-----LKYLDCRPQDLPR-EVLTTNPRRLSIIAESI 337
Query: 1189 QENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALY 1248
++ + + V C++L I+E ++ ++ + R ++
Sbjct: 338 RDGLATWDNWKHVNCDKL---------------------TTIIES-SLNVLEPAEYRKMF 375
Query: 1249 KAGLRTPLAI--AEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEE 1306
L++ A I I+ +L W + V + V K+ +V ++ +E
Sbjct: 376 DR-----LSVFPPSAHIPTILLSLI----WFDVIKSDVMV-VVNKLHK--YSLVEKQPKE 423
Query: 1307 ARIAAFS---AFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFP---- 1359
+ I+ S K N R I+ T + + P D+ + +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQ---YFYSHIGH 479
Query: 1360 --VPMEHSDKPSLEANQISKK-VDLESAGEKLLETSDNELSALVEGGSITE-LQQ----- 1410
+EH ++ +L +D +K+ S +A GSI LQQ
Sbjct: 480 HLKNIEHPERMTL----FRMVFLDFRFLEQKIRHDS----TAWNASGSILNTLQQLKFYK 531
Query: 1411 KFDAENPPVP---------FVGPGTGGVEFNVNASEIKIPDTTLSVQLG 1450
+ +N P F+ + + I T L +++
Sbjct: 532 PYICDNDPKYERLVNAILDFL--------PKIEENLICSKYTDL-LRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 9e-11
Identities = 97/715 (13%), Positives = 194/715 (27%), Gaps = 207/715 (28%)
Query: 1007 LCHRKFLEWNE-----DTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061
++ L E + + ++ + ++ D +S F
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRLFWT---- 70
Query: 1062 HLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKL 1121
LS + ++F+E L + +LM I ++
Sbjct: 71 ---LLSKQEEM---------VQKFVE-EVLRINY--------KFLMS-------PIKTEQ 102
Query: 1122 RDSTKGLHGKLEYRLGITSNNMLSDAQTLR---VCKRFYVALILSRLVQETPVLEVCETF 1178
R + +E R + + +D Q V + + L++ P V
Sbjct: 103 RQPSMMTRMYIEQR-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---- 153
Query: 1179 KVARGMV----QALQENAGRFASMVSVFCERLGWYDL------EGLIAKFQN---RVSFG 1225
+ G++ + + + ++ W +L E ++ Q ++
Sbjct: 154 -LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 1226 VRAEIVELTTIPYVKGS---RARAL-----YKAGLRTPLAIAEASISEIVKALFESSSWI 1277
+ + I S R L Y+ L L + ++ A F S I
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNA-FNLSCKI 268
Query: 1278 AEAQRRVQLGVAKKIKNGARK-IVLEKAEEARIAAFSAFKSLGLNVPQFSRPILSTATEN 1336
R V + I L+ + + L L +
Sbjct: 269 LLTTR--FKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSL---------LLKYLDC 313
Query: 1337 STGE--EEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDN 1394
+ E TT PR S I D + K V+ + KL ++
Sbjct: 314 RPQDLPREVLTTNPR---RLSII---AESIRDGLAT--WDNWKHVNCD----KLTTIIES 361
Query: 1395 ELSALVEGGSITELQQKFDAENPPVPFVGPGTGGVEFNVNASEIKIPDTTLSVQLGKNAI 1454
L+ L E ++ FD +V IP LS+ + + I
Sbjct: 362 SLNVLEP----AEYRKMFD----------------RLSVFPPSAHIPTILLSL-IWFDVI 400
Query: 1455 GTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGGFDCFLDRWEATHEFYFD 1514
D+ + V LV K E+T
Sbjct: 401 -----KSDVMVVVNKLHKY--SLVEKQPK----------------------ESTISIP-S 430
Query: 1515 IHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDR-------FLIY-- 1565
I+ + + + + +H S V + N+PK SD + +
Sbjct: 431 IYLELKVKLEN--EYALH-------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 1566 ---GSSDKNVLTPEHQLEM--IKQR-------WKRIGEIMEK-RDVRKFTWNMKVQIQVL 1612
++ L L+ ++Q+ W G I+ + ++ + +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 1613 KHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDE 1667
+ +I F L + + L+ S ++ L +DE
Sbjct: 542 ERLVNAILDF-----------LPKIEEN-LICSK-------YTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 7e-10
Identities = 62/393 (15%), Positives = 122/393 (31%), Gaps = 111/393 (28%)
Query: 1871 HGHWLQTSTATGRLS-------MEEP---NLQC--VEHMVEFKMSNEDIYGGNAEVDHCK 1918
H H + T + E+ N C V+ M + +S E E+DH
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-------EIDH-- 53
Query: 1919 INARDFFIPSQEN------WIL---------------LAADYSQIELRLMAHFSKDPAL- 1956
I + W L L +Y + + + P++
Sbjct: 54 I----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMM 108
Query: 1957 ----IGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRL---IYGILYGM---GPNT 2006
I + + D + A R + + R L ++ G+ G
Sbjct: 109 TRMYIEQRDRLYNDN-QVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 2007 LSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKI--KF 2064
++ + C S + WL++ +C+ V L+ ++ L +I +
Sbjct: 166 VALDV-CLS-------YKVQCKMDFKIFWLNLK--NCNSPETV--LEMLQKLLYQIDPNW 213
Query: 2065 GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCR 2124
+ + S + ++SI Q ++K +++ V ++ F C+
Sbjct: 214 TSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF---NLSCK 267
Query: 2125 LLL-----QVHDELV--LEVDPSVIK--------EAVSLVQKCME-------SAALLLVP 2162
+LL QV D L S+ E SL+ K ++ L P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 2163 LLVKIQVG-------STWGSLEPFQADNYTNVV 2188
+ I + +TW + + D T ++
Sbjct: 328 RRLSI-IAESIRDGLATWDNWKHVNCDKLTTII 359
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-08
Identities = 102/626 (16%), Positives = 187/626 (29%), Gaps = 175/626 (27%)
Query: 1461 RDLDL-EVQDRPNRDPCLVNKDRACNKGPINAINASGG----FDCFLDRWEATHEFYFD- 1514
+ D +VQD P + + I + +A G F L + E + + +
Sbjct: 31 DNFDCKDVQDMPKS----ILSKEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 1515 ------------IHYDKHSEANSGVLFEIHGLAVCWENSPV---YYVNLPKDLWSDHR-- 1557
I ++ + ++ I + ++ V Y V+ + +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 1558 ---RKDRFL-IYG--SSDKNVLTPE-HQLEMIKQR------WKRIGEIMEKRDVRKFTWN 1604
R + + I G S K + + ++ + W + V +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 1605 MKVQI-----QVLKHAAVSIQRFGGLN----------------LVGTSLGLENVGSS--- 1640
+ QI H++ R + LV L NV ++
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAW 259
Query: 1641 --F------LL----------LSPVHLKDGIDMCIVSWILWPDDERS--------SNPNL 1674
F LL LS I + S L PD+ +S +L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 1675 EKEVKK----RLSSEAAAAANRSGRWKN--QMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728
+EV RLS A + + W N + C ++ L L +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-------CDKLTTIIESS--LNVLEPA 369
Query: 1729 E--ELIEALL----NIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKL---RYLEKKA 1779
E ++ + L + IP +L +W V + N L K + ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPT-ILL--SLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 1780 YTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTD--KHCLDLLRHEHPIVPV 1837
++ + L + L H + + + +N K S D LD + H
Sbjct: 426 ISIPSIYLELKVKLENEYAL--HRSI-V-DHYNIPKTFDSDDLIPPYLDQYFYSH----- 476
Query: 1838 IKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQ-----TSTATGRLSMEEPNLQ 1892
I H L N R+++ + L +L+ STA LQ
Sbjct: 477 IGHH-----LKNIEHPE-----RMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1893 CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK 1952
++ + N+ Y +NA F+P E L+ + Y+ + LR+
Sbjct: 526 QLKFYKPYICDNDPKY-------ERLVNAILDFLPKIEE-NLICSKYTDL-LRIA----- 571
Query: 1953 DPALIGLLSKPHGDVFTMIAARWTGR 1978
L +F A + R
Sbjct: 572 -------LMAEDEAIFEE-AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 78/539 (14%), Positives = 165/539 (30%), Gaps = 144/539 (26%)
Query: 693 KADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY-IKVGNAIYSKKMDVV 751
+ PA + I G+ + A D + + + + + + N + V+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKM---DFKIFWLNLKN--CNSPETVL 199
Query: 752 RTILTAANLGGKD----PDHIVELCDEVVQEGHSVLIFCSSRKGCES--TARHV--SKFL 803
+ + DH + + + S+ +V +K
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 804 KKFSIN----VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859
F+++ + + + +T + A L+ H LT +E +
Sbjct: 260 NAFNLSCKILLTTRFKQ---VTDFLSAATTT----HISLDH--------HSMTLTPDEVK 304
Query: 860 VVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR----IGRDFIDGT----RYRQMA 911
+ L++ L +LP R V+ PR I DG ++ +
Sbjct: 305 SL-------LLKYLDCRPQ-----DLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 912 GRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVV-AGG 970
T I++ S+ + +P E +K+ L S + + +L ++
Sbjct: 352 CDKLTTIIES---SLNVLEPAEYRKMFDRL--------SVFPPSAH-IPTILLSLIWFDV 399
Query: 971 IVQTAEDI----HRYVRCTLLN-STKPF-------QDVVKSAQDSLRWLCHRKFLEWNED 1018
I + H+Y +L+ K +K ++ L HR ++
Sbjct: 400 IKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDH--- 452
Query: 1019 TKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVY-LSTPINVEVEPD 1077
Y+ + ++ + D + + H+ + L N+E
Sbjct: 453 ---YN--------IPKTFDSDDLIPPYLD------QYFYS---HIGHHLK---NIEHPER 489
Query: 1078 WELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLG 1137
L+ FL+ L+Q + + A A I + L+ Y+
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHD---------STAWNASGSILNTLQQLKF-------YKPY 533
Query: 1138 ITSNNMLSDAQTLRVCKRFYVA----LILSR---LVQ------ETPVLEVCETFK-VAR 1182
I N+ + + + F LI S+ L++ + + E E K V R
Sbjct: 534 ICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE--EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-08
Identities = 83/612 (13%), Positives = 172/612 (28%), Gaps = 203/612 (33%)
Query: 288 EAFWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSKEMLNEGD 347
+ F E + I F S I + R++ YN ++
Sbjct: 80 QKFVEEVLRINYKFLM------SPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNV 131
Query: 348 SKVQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCG----AADTS 403
S++Q L+Q ++ EL P + + G G G A D
Sbjct: 132 SRLQPYLK---LRQ-------ALLELRPAK-----NVL----IDG-VLGSGKTWVALDVC 171
Query: 404 EA----MMFRDGV----VSEKGSVTH--KSCQKIKFKCHHDNTSRTEG-------ISDVQ 446
+ + + S + QK+ ++ + TSR++ I +Q
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 447 EKDSVLIV---HERKLDI-----SSQGIDS--------ITS------DSPTNVIKKPVGN 484
+ L+ +E L + +++ ++ +T+ D + +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 485 EKSDEAGTPSSS-GMLKDCLDLS-SWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRR 542
+ TP +L LD LP E+ + P +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---------NP-----RRL------- 330
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH-----LEVLLEPL 597
S +AE +R ++T + + +K L V LEP
Sbjct: 331 ------------SIIAE--SIRDGLATWD------NWKHVNCDKLTTIIESSLNV-LEP- 368
Query: 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELH---MV 654
R + P + + ++ + ++V+++LH +V
Sbjct: 369 -AEYRKMF--DRLSVFPPSAHIPTILLS--------LIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 655 ADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAA 714
Q + + + + + + + N A
Sbjct: 418 EKQPKESTISI--------------------------------PSIYLE-LKVKLENEYA 444
Query: 715 V------ADWLQAALYETNFRPVPLEEYI--KVG----NAIYSKKMDVVRTIL------- 755
+ + + P L++Y +G N + ++M + R +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 756 -------TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808
TA N G + L + + C + E + FL K
Sbjct: 505 QKIRHDSTAWNASGSILN---TLQQLKFYKPY----ICDNDPKYERLVNAILDFLPKIEE 557
Query: 809 NVHSSDSEFIDI 820
N+ S++ D+
Sbjct: 558 NLIC--SKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-08
Identities = 103/713 (14%), Positives = 210/713 (29%), Gaps = 202/713 (28%)
Query: 1462 DLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGGFDC--FLD--RWEATHEFYFDIHY 1517
D + +D V +D FDC D + + E I
Sbjct: 8 DFETGEHQYQYKDILSVFED-----------AFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 1518 DKHSEANSGVLFEIHGLAVCWENSPVYYV----NLPKD---LWSDHRRKDRFLIYGSSDK 1570
K + + + LF + + + L + L S + + R
Sbjct: 57 SKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-------QP 105
Query: 1571 NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGT 1630
+++T + + + R ++ K +V + L+ A + ++ + + G
Sbjct: 106 SMMTRMYIEQ--RDRLYNDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGV 158
Query: 1631 SLGLENVGSSFLLLSPVHLKDGIDMCIVSWILW--------PDDERSSNPNLEKEVKKRL 1682
LG G +++ L V L + + I W P+ L ++
Sbjct: 159 -LG---SGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1683 SSEAAAAAN---RSGRWKNQMRR----AAHNGC---CRRVAQTRAL------CSVLWKLL 1726
+S + ++N R + ++RR + C V +A C K+L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----KIL 269
Query: 1727 V---SEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTL- 1782
+ +++ + L ++ D + D + ++LL L+YL+ + L
Sbjct: 270 LTTRFKQVTDFLSAATT--THISLDHHSMTLTPD-----EVKSLL---LKYLDCRPQDLP 319
Query: 1783 -AGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLL-----RH---EHP 1833
+ + + IA + L H + + + L++L R
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 1834 IVPV---IKEHRTLAKL-----LNCTLGSICSLARISM-----STQKYTLHGHWLQTSTA 1880
+ P I L+ + + + + L + S+ ++ +L+
Sbjct: 380 VFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-- 436
Query: 1881 TGRLSMEEPNL--QCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAAD 1938
E L V+H Y D D P + +
Sbjct: 437 --VKLENEYALHRSIVDH-----------YNIPKTFDS-----DDLIPPYLDQYF----- 473
Query: 1939 YSQIELRLMAHFSK-DPA-LIGLLSKPHGDVFTMIAA--RWTGRSEDSVGSQERDQTKRL 1994
YS I H + + L D F + R + ++ GS
Sbjct: 474 YSHI----GHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSI-------- 520
Query: 1995 IYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKG 2054
NTL + +K +K ++ + + V ++
Sbjct: 521 ---------LNTLQQ------------LKFYKP---------YICDNDPKYERLVNAI-- 548
Query: 2055 RKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYK 2107
FL KI N SK D+++IA++ I +K
Sbjct: 549 -LDFLPKI--EENLICSK-------------YTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-07
Identities = 75/532 (14%), Positives = 156/532 (29%), Gaps = 145/532 (27%)
Query: 35 AKITVE-VSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQA 93
+ I E PS Y+ +D + Q + V R + Y K QA
Sbjct: 96 SPIKTEQRQPS--MMTRMYI-EQRDRLYNDNQVFAKYN--VSR-----LQPYLK--LRQA 143
Query: 94 LLSDQAQPQATQ-------K---VISRCSSKEGNSEVGCHMKD-------GSAHIPESL- 135
LL + K + C S + V C M + + PE++
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK----VQCKMDFKIFWLNLKNCNSPETVL 199
Query: 136 -ELKQFPTDFLSLYCSEIHSSASSPSEA-----------KLKDHKRHSSPSLL---GGED 180
L++ + S S++ K K ++ LL ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQN 255
Query: 181 NKIAK------------KKYCVSNLLQSGEQTTCS---NAKNIEETQS-GFIVKTGNLVP 224
K + V++ L + T S ++ + + ++K + P
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 225 NSSQRVTDSNASLLLQ---ASLR------------KCDKSS---KSTLNTTACYTPEPSI 266
R + L S+R CDK + +S+LN EP+
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-----EPAE 370
Query: 267 VKTYVRETPKSTCGNSIFSPG--------EAFWNEAIEIADGFFAHTDIGPSQIAEGIAD 318
+ S+F P W + I+ + S + + +
Sbjct: 371 YRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 319 S---------KSQNEINNSYNLRNK---NYNKSKEMLNEGDSKV-------QHIKAGGSL 359
S + + ++ N Y L +YN K ++ HI G L
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHL 481
Query: 360 KQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMM-----FRDGVVS 414
K + + ++ + LDF F ++ ++ A+ + + ++ +
Sbjct: 482 KNIEHP-----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 415 EKGSVTHKSCQKIKF-KCHHDNTSRTEGISDVQ-----EKDSVLIVHERKLD 460
+ F +N ++ ++ E +++ +++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 40/234 (17%)
Query: 495 SSGMLKDCLDLSSWL-PSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAG 553
+S M D + S + + +L P+Q+E L+ +N++ C T +G
Sbjct: 3 NSNMGSDSGTMGSDSDEENVAARASPEPELQLRPYQMEV--AQPALEGKNIIICLPTGSG 60
Query: 554 KSFVAEILMLRRLI-----STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQ 608
K+ VA + L S ++++ V + + +P + G
Sbjct: 61 KTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLV---EQLFRKEFQPFLKKWYRVIGLS 117
Query: 609 GGGSLP-------KDTSVAVCTIEK-ANSLVNRMLEEG---RLSEIGIIVIDELHMVADQ 657
G L K + + T + NSL+N E +LS+ +I+IDE H ++
Sbjct: 118 GDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNK 176
Query: 658 NRGY---LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708
Y + L+ KL+ N+ QI+G++A+
Sbjct: 177 EAVYNNIMRHYLMQKLK--------------NNRLKKENKPVIPLPQILGLTAS 216
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 8e-07
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRK--GLVRVLTATSTLAAGVNLPARRVIFRQP 895
E A + L + + ++L AT + G+NL RR+IF
Sbjct: 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSL 398
Query: 896 R-IGRDFIDGTRYR--------QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCP 946
+ Q+AGRAGR K + E++ + +L
Sbjct: 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVD 458
Query: 947 PLHSC 951
P+ +
Sbjct: 459 PIRAA 463
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 63/401 (15%), Positives = 134/401 (33%), Gaps = 64/401 (15%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583
L +Q + ++ L + T +GK+ VA + + L L+V+P +++
Sbjct: 93 SLRDYQEKA--LERWLVDKRGCIVLPTGSGKTHVA-MAAINEL---STPTLIVVPTLALA 146
Query: 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS-VAVCTIEKANSLVNRMLEEGRLSE 642
+ E L + E +V + G K+ + V T +S + G
Sbjct: 147 EQWKERLGIFGE---EYVGEFSGRI------KELKPLTVSTY---DSAYVNAEKLGN--R 192
Query: 643 IGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGL-- 700
+++ DE+H + ++ + ++ + R G + T + D H +
Sbjct: 193 FMLLIFDEVHHLPAESYVQIAQMSIAPFRL----GL--------TATFERE-DGRHEILK 239
Query: 701 -QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
+ G + + L + F P+ +E ++ Y K+ V + L A
Sbjct: 240 EVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVE-----YEKREKVYKQFLRARG 294
Query: 760 LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
+ + + ++ + + + + +K K I + I
Sbjct: 295 ITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIII 354
Query: 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
T + + R + + EERE + +R G R + ++ L
Sbjct: 355 FTRHNELVYRISKVF----------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVL 404
Query: 880 AAGVNLPARRVIFRQPRIGRDFIDGT----RYRQMAGRAGR 916
G+++P V + G+ Y Q GR R
Sbjct: 405 DEGIDVPDANVGV--------IMSGSGSAREYIQRLGRILR 437
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 2e-06
Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL----ISTGKMALLVLPY 579
K +Q+E ++ +N + CA T GK+FV+ ++ L +
Sbjct: 13 KPRNYQLEL--ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 70
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYG----NQGGGSLPKDTSVAVCTIEK-ANSLVNRM 634
+ + + E G V G N + ++ + + T + N+L
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 130
Query: 635 LEEGRLSEIGIIVIDELHMVADQN 658
+ LS +++ DE H + Q+
Sbjct: 131 IP--SLSIFTLMIFDECHNTSKQH 152
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 4e-06
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 10/138 (7%)
Query: 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578
+R + + +Q + N + T GK+ +A ++ RL G L++ P
Sbjct: 4 RRDLIQPRIYQEVIYAK---CKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTIEKA-NSLVNRM 634
+ + AE L + + G + K V V T + N L+
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 120
Query: 635 LEEGRLSEIGIIVIDELH 652
+ L ++ +IV DE H
Sbjct: 121 I---SLEDVSLIVFDEAH 135
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-06
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 19/141 (13%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILML----RRLISTGKMALLVLPY 579
K +Q+E + +N + CA T +GK+FV+ ++ + +
Sbjct: 7 KARSYQIELA--QPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK-------DTSVAVCTIEKA-NSLV 631
V + + V R S G G D+ + V T + NS
Sbjct: 65 VPVY---EQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE 121
Query: 632 NRMLEEGRLSEIGIIVIDELH 652
+ L LS +++ DE H
Sbjct: 122 DGTLT--SLSIFTLMIFDECH 140
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-06
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 13/138 (9%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL----ISTGKMALLVLPY 579
K +Q+E + +N + CA T GK+FV+ ++ L +
Sbjct: 4 KPRNYQLEL--ALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK----DTSVAVCTIEK-ANSLVNRM 634
+ + ++A E LG ++ S G + D + + T + N+L N
Sbjct: 62 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA 121
Query: 635 LEEGRLSEIGIIVIDELH 652
+ LS +++ DE H
Sbjct: 122 IP--SLSVFTLMIFDECH 137
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 27/90 (30%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG---------VN--LPARRVIFRQ 894
V+ LTVE+R + +R G +VL T+ A G VN LP ++
Sbjct: 61 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 120
Query: 895 P-----RIGRDFIDGTRYRQMAGRAGRTGI 919
RIGR GR G+ G+
Sbjct: 121 YETYLHRIGR-----------TGRFGKKGL 139
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 51/398 (12%), Positives = 95/398 (23%), Gaps = 128/398 (32%)
Query: 536 DGVLQRRNL-VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLL 594
+L++ V AGK+ +L L++ P + +E E
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-- 59
Query: 595 EPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654
+ H +++ GS + +L RMLE R+ +I++DE H
Sbjct: 60 LDVKFHTQAF---SAHGS--GREVIDAMC---HATLTYRMLEPTRVVNWEVIIMDEAH-F 110
Query: 655 ADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAA 714
D + R A+ + M+AT P
Sbjct: 111 LDPASIAARGWAAHRAR-------------------------ANESATILMTATPP---- 141
Query: 715 VADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE 774
+ + + + + T +
Sbjct: 142 ----GTSDEFPHSNGEIEDVQ-----------TDIPSEPWNTGHDW-------------- 172
Query: 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGL 834
++ + F S + A +LR+ +
Sbjct: 173 ILADKRPTAWFLPSIRAANVMAA----------------------------SLRKAGKSV 204
Query: 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI-FR 893
+ + E ++ + AT G NL RV+ R
Sbjct: 205 VVL------------NRKTFEREYPTIKQKKPD----FILATDIAEMGANLCVERVLDCR 248
Query: 894 QPRIGRDFIDGTRYR-------------QMAGRAGRTG 918
+G + Q GR GR
Sbjct: 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 27/90 (30%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG---------VN--LPARRVIFRQ 894
VA + VE+R V +R+G +VL T+ A G +N LP +
Sbjct: 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 419
Query: 895 P-----RIGRDFIDGTRYRQMAGRAGRTGI 919
RIGR GR G+ G+
Sbjct: 420 NETYLHRIGR-----------TGRFGKRGL 438
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 45.4 bits (106), Expect = 2e-04
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 19/156 (12%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL-- 566
I K +Q+E + +N + CA T +GK+FV+ ++
Sbjct: 233 AAEGIGKPPPVYETKKARSYQIEL--AQPAINGKNALICAPTGSGKTFVSILICEHHFQN 290
Query: 567 --ISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-------KDT 617
+ + V + + V R S G G +D+
Sbjct: 291 MPAGRKAKVVFLATKVPVY---EQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS 347
Query: 618 SVAVCTIEKA-NSLVNRMLEEGRLSEIGIIVIDELH 652
+ V T + NS + L LS +++ DE H
Sbjct: 348 DIIVVTPQILVNSFEDGTLT--SLSIFTLMIFDECH 381
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 29/88 (32%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG-----VNLPARRVI-FRQP---- 895
V+ ++ L +ER+ + +R G R+L +T LA G V+L VI + P
Sbjct: 57 VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL----VINYDLPANKE 112
Query: 896 ----RIGRDFIDGTRYRQMAGRAGRTGI 919
RIGR GR GR G+
Sbjct: 113 NYIHRIGR-----------GGRFGRKGV 129
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 3e-04
Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 20/182 (10%)
Query: 484 NEKSDEAGTPSSSGMLKDCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRR 542
+ + + T S D L + I K +Q+E + +
Sbjct: 207 EDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIEL--AQPAINGK 264
Query: 543 NLVYCASTSAGKSFVAEILMLRRL----ISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598
N + CA T +GK+FV+ ++ + + V + + V
Sbjct: 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY---EQQKNVFKHHFE 321
Query: 599 RHVRSYYGNQGGGSLP-------KDTSVAVCTIEKA-NSLVNRMLEEGRLSEIGIIVIDE 650
R S G G +D+ + V T + NS + L LS +++ DE
Sbjct: 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT--SLSIFTLMIFDE 379
Query: 651 LH 652
H
Sbjct: 380 CH 381
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 29/88 (32%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG-----VNLPARRVI-FRQP---- 895
H G+ EER ++ R+L AT+ G VN+ + P
Sbjct: 58 AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI----AFNYDMPEDSD 113
Query: 896 ----RIGRDFIDGTRYRQMAGRAGRTGI 919
R+ R AGR G G+
Sbjct: 114 TYLHRVAR-----------AGRFGTKGL 130
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 27/90 (30%)
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG---------VN--LPARRVIFRQ 894
VA + VE+R V +R+G +VL T+ A G +N LP +
Sbjct: 293 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 352
Query: 895 P-----RIGRDFIDGTRYRQMAGRAGRTGI 919
RIGR GR G+ G+
Sbjct: 353 NETYLHRIGR-----------TGRFGKRGL 371
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 7e-04
Identities = 72/515 (13%), Positives = 131/515 (25%), Gaps = 168/515 (32%)
Query: 436 TSRTEGISDVQ----EKDSVLIVHERK---LDISSQGIDSITSDSPTNVIKKPVGNEKSD 488
+ G+ DVQ E I + K + I +++ D P P+ N +
Sbjct: 140 DQKWNGVDDVQMIVVEPGKPAINVQTKPGIFKTAHGEIGAVSLDYPIGTSGSPIVNSNGE 199
Query: 489 EAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCA 548
G + +L + +S+ + E ++ E + + + +R+ V
Sbjct: 200 IIGLYGNGVILGNGAYVSAIVQGE-----------RVEEPVPEAYNPEMLKKRQLTVLDL 248
Query: 549 STSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEP---LGRHVRSYY 605
AGK+ +LP + A + +L P + +
Sbjct: 249 HPGAGKT-------------RR-----ILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEAL 290
Query: 606 GNQGGGSLP--------KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
L + V V +L +R++ R+ + V+DE H D
Sbjct: 291 RGLPVRYLTPAVQREHSGNEIVDVMC---HATLTHRLMSPLRVPNYNLFVMDEAH-FTDP 346
Query: 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVAD 717
+ T++ A + M+AT P +
Sbjct: 347 ASIAARGYIATRVE-------------------------AGEAAAIFMTATPPGTS---- 377
Query: 718 WLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ 777
+TN + I D + +
Sbjct: 378 ---DPFPDTNSPVHDVSSEI----------PDRAWSSGFEW----------------ITD 408
Query: 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPV 837
+ F +S K A+ L++ V + + D +C G
Sbjct: 409 YAGKTVWFVASVKMSNEIAQC----LQRAGKRVIQLNRKSYD-----TEYPKCKNG---- 455
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI-FRQPR 896
+ + V T G N A RVI R+
Sbjct: 456 -------------------DWDFV------------ITTDISEMGANFGASRVIDCRKSV 484
Query: 897 IGRDFIDG----TRYR----------QMAGRAGRT 917
+G Q GR GR
Sbjct: 485 KPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2191 | |||
| 3pv8_A | 592 | DNA polymerase I; DNA polymerase I, protein-DNA co | 100.0 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 100.0 | |
| 4dfk_A | 540 | DNA polymerase I, thermostable; DNA polymerase, tr | 100.0 | |
| 1bgx_T | 832 | TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi | 100.0 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 3ikm_A | 1172 | DNA polymerase subunit gamma-1; human mitochondria | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.98 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.96 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.96 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.96 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.95 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.95 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.94 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.92 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.91 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.91 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.9 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.9 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.9 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.89 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.89 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.89 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.89 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.89 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.89 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.89 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.89 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.88 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.87 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.87 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.86 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.86 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.85 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.8 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.78 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.75 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.73 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.71 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.69 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.68 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.67 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.67 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.66 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.64 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.63 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.63 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.62 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.59 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.32 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.54 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.48 | |
| 1yt3_A | 375 | Ribonuclease D, RNAse D; exoribonuclease, exonucle | 99.27 | |
| 3saf_A | 428 | Exosome component 10; exoribonuclease, RNA exosome | 99.16 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.13 | |
| 2e6m_A | 208 | Werner syndrome ATP-dependent helicase homolog; AP | 99.13 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 99.12 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 98.93 | |
| 2hbj_A | 410 | Exosome complex exonuclease RRP6; RNA metabolism, | 98.92 | |
| 3cym_A | 440 | Uncharacterized protein BAD_0989; structural genom | 98.77 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.1 | |
| 1vk0_A | 206 | Hypothetical protein; homohexamer, AT5G06450, stru | 98.0 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.99 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.29 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 97.27 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.27 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 97.18 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.09 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.04 | |
| 1u9l_A | 70 | Transcription elongation protein NUSA; escherichia | 96.92 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.77 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.47 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 96.32 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.14 | |
| 2w9m_A | 578 | Polymerase X; SAXS, DNA repair, DNA polymerase, DN | 96.06 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.03 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 95.49 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 95.24 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.18 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.95 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.74 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 94.45 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.38 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 94.2 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 94.1 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.93 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 93.73 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 93.54 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 93.52 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 93.34 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 93.33 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 93.17 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 93.17 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 93.16 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 93.09 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.05 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 93.04 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 92.86 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.79 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.66 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 92.63 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.52 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 92.39 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 91.93 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 91.66 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 91.64 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 91.49 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 91.42 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 91.22 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 90.88 | |
| 2nrt_A | 220 | Uvrabc system protein C; UVRC, endonuclease, RNAse | 90.88 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 90.81 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 90.73 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 90.72 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 90.71 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.7 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 90.65 | |
| 2bcq_A | 335 | DNA polymerase lambda; misalignment, extrahelical, | 90.47 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 90.31 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 90.23 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 90.18 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 90.07 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.04 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 89.93 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 89.58 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 89.5 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 89.41 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 89.29 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 89.18 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 89.11 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 88.9 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 88.83 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 88.77 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 88.61 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 88.55 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 88.48 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 88.32 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 88.29 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 88.03 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 88.02 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 87.94 | |
| 4gfj_A | 685 | Topoisomerase V; helix-hairpin-helix, DNA repair e | 87.82 | |
| 3bqs_A | 93 | Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s | 87.81 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 87.14 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 86.8 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 86.67 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 86.33 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 86.17 | |
| 3mab_A | 93 | Uncharacterized protein; NYSGXRC, PSI-2, structura | 86.11 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 86.03 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 86.0 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 85.73 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 85.44 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 85.26 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 84.74 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 84.72 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 84.47 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 84.42 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 84.35 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 84.13 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 83.77 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 83.37 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 82.67 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 82.61 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 82.44 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 82.3 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 82.14 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 82.13 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 81.98 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 81.97 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 81.42 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 80.77 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 80.72 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 80.47 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 80.28 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 80.24 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 80.03 |
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-116 Score=1142.72 Aligned_cols=559 Identities=31% Similarity=0.428 Sum_probs=502.7
Q ss_pred CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHH
Q 000107 1509 HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKR 1588 (2191)
Q Consensus 1509 ~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (2191)
...++|+++.+. .....+++|++||+++ .+|||++.+. ..++.
T Consensus 30 ~~~aldtE~~~~----~~~~a~Lvgisla~~~-~a~yIp~~~~--------------------------------~~l~~ 72 (592)
T 3pv8_A 30 DKAALVVEVVEE----NYHDAPIVGIAVVNEH-GRFFLRPETA--------------------------------LADPQ 72 (592)
T ss_dssp SEEEEEEECCSS----SCTTCCCCEEEEEETT-EEEEECHHHH--------------------------------TTCHH
T ss_pred cCcEEEEEEcCC----ccCcccEEEEEEEcCC-ceEEEccchh--------------------------------hHHHH
Confidence 456889988643 1222368999999877 4899987421 01246
Q ss_pred HHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCC
Q 000107 1589 IGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDER 1668 (2191)
Q Consensus 1589 L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~ 1668 (2191)
|+++|+++.+.|++||+|+|+++|+++|+.++++ .||||||+|||+|+...
T Consensus 73 Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~-----------------------------~fDTmLAAYLL~p~~~~ 123 (592)
T 3pv8_A 73 FVAWLGDETKKKSMFDSKRAAVALKWKGIELCGV-----------------------------SFDLLLAAYLLDPAQGV 123 (592)
T ss_dssp HHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCE-----------------------------EEEHHHHHHHHCGGGCC
T ss_pred HHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCc-----------------------------cchHHHHHHHcCCCCCC
Confidence 8999999999999999999999999999877643 58999999999998777
Q ss_pred CCchhHHHHHHHhhChHH---HHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000107 1669 SSNPNLEKEVKKRLSSEA---AAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVN 1744 (2191)
Q Consensus 1669 ~~l~~L~~~~~~~l~~e~---~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~~L~~l~~~iEmpl~~ 1744 (2191)
|+++ .++.++++.+. ....++ |... ....+.+..|++.|+.++++|+..|.++|++.++.++|.++|||+++
T Consensus 124 ~~L~---~La~~yLg~~l~~~ee~~gk-g~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~~l~~~~E~pl~~ 199 (592)
T 3pv8_A 124 DDVA---AAAKMKQYEAVRPDEAVYGK-GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSS 199 (592)
T ss_dssp CSHH---HHHGGGTCCSSCCHHHHHCS-GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHH
T ss_pred CCHH---HHHHHHcCCCCchHHHhcCc-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhHHHH
Confidence 7654 45666665432 222221 1111 11224567899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHH
Q 000107 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHC 1824 (2191)
Q Consensus 1745 vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~v 1824 (2191)
+|++||.+||+||.+.+.++..++.+++++++++||+++|.+||++||+||+++||++||||+. +|+|++|||+++|
T Consensus 200 vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~---kktktg~st~~~v 276 (592)
T 3pv8_A 200 ILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVL---KKTKTGYSTSADV 276 (592)
T ss_dssp HHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCC---CEETTEECCCHHH
T ss_pred HHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCC---CCCCCCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 3455569999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCcccccccccccccc
Q 000107 1825 LDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN 1904 (2191)
Q Consensus 1825 L~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~ 1904 (2191)
|++|+..||++..||+||++.|+++||+++++++++ ..+|||||+|+|++|+||||||++||||||| +++
T Consensus 277 L~~l~~~~p~~~~ile~R~l~kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlss~~PNlQniP------~~~ 346 (592)
T 3pv8_A 277 LEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVR----PATKKVHTIFNQALTQTGRLSSTEPNLQNIP------IRL 346 (592)
T ss_dssp HHHTTTTCTHHHHHHHHHHHHHHHHHHTHHHHHHSB----TTTTEECCEEESSCCSSSCCEEESSCCSSCC------CSS
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCEECceeeeCCceeeCcccccCCccccC------cCc
Confidence 999999999999999999999999999999987763 3379999999999999999999999999999 456
Q ss_pred ccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCC
Q 000107 1905 EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVG 1984 (2191)
Q Consensus 1905 ~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt 1984 (2191)
+.|+ .||+||+|.++||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||
T Consensus 347 ~~g~-----------~iR~~Fv~~~~g~~lv~aDySqiElRilAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~~~vt 414 (592)
T 3pv8_A 347 EEGR-----------KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRR-DLDIHTKTAMDIFQVSEDEVT 414 (592)
T ss_dssp HHHH-----------GGGGGEECSSTTEEEEEEEETTHHHHHHHHHHTCHHHHHHHHT-TCCHHHHHHHHHHSCCTTTCC
T ss_pred hhhH-----------hhhhEEEecCCCCEEEEechhhHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhCC
Confidence 6777 7999999834999999999999999999999999999999998 899999999999999999999
Q ss_pred hhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccC
Q 000107 1985 SQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKF 2064 (2191)
Q Consensus 1985 ~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s 2064 (2191)
+++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++++|+++|||+|++|||||+|+|++
T Consensus 415 ~~~R~~aK~~~fg~~YG~~~~~La~~l~i~~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~i~s 494 (592)
T 3pv8_A 415 PNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITS 494 (592)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGC
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHcCCCHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHcCCEECCCCCeeeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHH
Q 000107 2065 GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKE 2144 (2191)
Q Consensus 2065 ~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~ 2144 (2191)
.|...|+++||+|+|+|||||||||+|.||+++++.|.+. +.+++|+|||||||+||||++++++
T Consensus 495 ~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~---------------~~~~~l~lqVHDElv~ev~~~~~~~ 559 (592)
T 3pv8_A 495 RNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEE---------------RLQAHLLLQVHDELILEAPKEEMER 559 (592)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCCCEEEEECSSEEEEEEEGGGHHH
T ss_pred cchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCceEEEEEcceeEEEeCHHHHHH
Confidence 9999999999999999999999999999999999999874 4578999999999999999999999
Q ss_pred HHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2145 AVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2145 v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
++.+|+++||+|+.|.|||.|++++|+||+++|
T Consensus 560 ~~~~v~~~Me~a~~l~VPl~v~~~~G~~W~ea~ 592 (592)
T 3pv8_A 560 LCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 592 (592)
T ss_dssp HHHHHHHHHHTSSCCSSCCCEEEEEESSTTTCC
T ss_pred HHHHHHHHHhhcccCCCcEEEEecccCCHHHhC
Confidence 999999999999999999999999999999986
|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-112 Score=1122.21 Aligned_cols=589 Identities=29% Similarity=0.449 Sum_probs=517.2
Q ss_pred eeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCC
Q 000107 1490 NAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSD 1569 (2191)
Q Consensus 1490 ~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~ 1569 (2191)
.++++...+..|++.+...+.++||+|+++.. ....+++|+++++.++.++|+|+.+...+.+
T Consensus 8 ~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~----~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~------------- 70 (605)
T 2kfn_A 8 VTILDEETLKAWIAKLEKAPVFAFDTETDSLD----NISANLVGLSFAIEPGVAAYIPVAHDYLDAP------------- 70 (605)
T ss_dssp EECCSHHHHHHHHHHHHTSSSEEEEEEESCSC----TTTCCEEEEEEEEETTEEEEEECCCCSTTCC-------------
T ss_pred EEecCHHHHHHHHHhcccCCeEEEEEecCCCC----cccCceEEEEEEEcCCcEEEEeccccccccc-------------
Confidence 45556678888898887778899999987541 1123699999999888899998865211000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCC
Q 000107 1570 KNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHL 1649 (2191)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1649 (2191)
.-++ +.+.+..|.++|+++.+.|++||+|||+.+|.++|+.+.+.
T Consensus 71 -~~l~-------~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~--------------------------- 115 (605)
T 2kfn_A 71 -DQIS-------RERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGI--------------------------- 115 (605)
T ss_dssp -CCCC-------HHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCE---------------------------
T ss_pred -cccC-------HHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCc---------------------------
Confidence 0011 13456789999999999999999999999999988866532
Q ss_pred CccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---HHHhhccC---chhh-hhHHHHhhhHHHHHHHHHHHHHHH
Q 000107 1650 KDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA---AAAANRSG---RWKN-QMRRAAHNGCCRRVAQTRALCSVL 1722 (2191)
Q Consensus 1650 ~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~---~~~~~~~g---~~~~-~~~~~~~~ya~~Da~~t~~L~~~L 1722 (2191)
++|||+|+|||+|+..+++++.| +.++++... ....+++. .|.. ++ +.+..||+.|+.++++|+..|
T Consensus 116 --~~DT~laayLL~p~~~~~~L~~L---a~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 116 --AFDTMLESYILNSVAGRHDMDSL---AERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp --EEEHHHHHHHHCTTSSCCSHHHH---HHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHhCCCCCCCCHHHH---HHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998777765554 455543321 11222111 2322 12 346789999999999999999
Q ss_pred HHHHHH-HHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHH
Q 000107 1723 WKLLVS-EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801 (2191)
Q Consensus 1723 ~~~L~~-~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~ 1801 (2191)
.++|.+ .++.++|.++|||++.+|++||.+||+||.+.+.++..++.+++++++++||+++|.+||++||+||+++||+
T Consensus 190 ~~~L~~~~~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~ 269 (605)
T 2kfn_A 190 WPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFE 269 (605)
T ss_dssp HHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCC-CCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeecccccccccc
Q 000107 1802 HLKLPIPEGHNKGK-QHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880 (2191)
Q Consensus 1802 ~l~lp~~~~~~k~k-~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTa 1880 (2191)
+||||+.+ |+| |.|||++++|++|+..||+++.||+||+++|+++||+++++++++ ..+|||||+|+|+||+
T Consensus 270 ~lglp~~k---ktk~g~~st~~~vL~~l~~~~p~~~~il~~r~l~Kl~sty~~~l~~~v~----~~~grih~~~~~~~t~ 342 (605)
T 2kfn_A 270 KQGIKPLK---KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMIN----PKTGRVHTSYHQAVTA 342 (605)
T ss_dssp TSSCSCCC---CCC----TTTCCHHHHHTTTCSHHHHHHHHHHHHHHHHHTTTTGGGGBC----TTTSSBCCEEESSCCS
T ss_pred hcCCCCCC---cCCCCCccccHHHHHHHHhcChHHHHHHHHHHHHHHhccHHHHHHHhhC----cccCeecceeEecccc
Confidence 99998643 333 447999999999988899999999999999999999999876653 2349999999999999
Q ss_pred ccccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHh
Q 000107 1881 TGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLL 1960 (2191)
Q Consensus 1881 TGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af 1960 (2191)
||||||++||||||| ++++.|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|
T Consensus 343 TGRlss~~PnlQniP------~r~~~g~-----------~iR~~f~~~-~g~~lv~aDysqiElRilA~ls~d~~l~~af 404 (605)
T 2kfn_A 343 TGRLSSTDPNLQNIP------VRNEEGR-----------RIRQAFIAP-EDYVIVSADYSQIELRIMAHLSRDKGLLTAF 404 (605)
T ss_dssp SSCCEEESSCGGGSC------SSSHHHH-----------HHHHTBBCC-TTEEEEEEEETTHHHHHHHHHTTCHHHHHHH
T ss_pred cCceecCCCCcccCC------CCccchH-----------hHhheeeCC-CCCEEEEechhhhHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 4566777 799999996 9999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHH
Q 000107 1961 SKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAV 2040 (2191)
Q Consensus 1961 ~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~ 2040 (2191)
++ |.|||+.||+.|||+|+++||+++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++
T Consensus 405 ~~-g~Dih~~tA~~~f~~~~e~vt~~~R~~aK~~~fg~~YG~~~~~la~~l~i~~~ea~~~i~~~~~~~p~v~~~~~~~~ 483 (605)
T 2kfn_A 405 AE-GKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 483 (605)
T ss_dssp HT-TCCHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTTCCTTHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hc-CCCHHHHHHHHHhCCChhhcCHHHHhhhhhhhccccccCCHHHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 98 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccC
Q 000107 2041 SSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLK 2120 (2191)
Q Consensus 2041 ~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~ 2120 (2191)
+.|+++|||+|++|||||+|+|+++|...|+.++|+|+|+|||||||||+|.||+++++.+.+. +
T Consensus 484 ~~a~~~g~v~tl~GRrr~~p~~~s~~~~~r~~~~r~a~N~~iQgsaaDi~k~am~~~~~~l~~~---------------~ 548 (605)
T 2kfn_A 484 AQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAE---------------Q 548 (605)
T ss_dssp HHHHHHSEEECTTCCEEECTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------C
T ss_pred HHHHHcCcEECCCCCeEECCcccCCCchhhhhhhhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc---------------C
Confidence 9999999999999999999999999999999999999999999999999999999999998764 4
Q ss_pred CceeEEEEecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2121 GRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2121 ~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
.+++|+|||||||+||||++++++++.+|+++|++++.|.|||.|++++|+||+++|
T Consensus 549 ~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~~~l~vpl~v~~~~g~~W~~~~ 605 (605)
T 2kfn_A 549 PRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH 605 (605)
T ss_dssp CSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEEEEESBHHHHC
T ss_pred CCceeeEEeccEEEEEcCHHHHHHHHHHHHHHHhccCCCCCeEEEecccCCChHhcC
Confidence 578999999999999999999999999999999999999999999999999999986
|
| >4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-112 Score=1089.99 Aligned_cols=528 Identities=29% Similarity=0.446 Sum_probs=479.0
Q ss_pred CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHH
Q 000107 1509 HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKR 1588 (2191)
Q Consensus 1509 ~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (2191)
+.+++|+|+.+. ......++|+++|+ ++.+||++ . .+..
T Consensus 11 ~~valDtE~~~~----~~~~a~Lvgi~la~-~~~a~~i~---~---------------------------------~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK----EPMWADLLALAAAR-GGRVHRAP---E---------------------------------PYKA 49 (540)
T ss_dssp TTCEEEEEESSS----CTTTCCEEEEEEEE-TTEEEECS---S---------------------------------HHHH
T ss_pred CceEEEEEecCC----ccCcccEEEEEEEc-CCEEEEeh---h---------------------------------hHHH
Confidence 458999999743 12233699999997 45677764 0 1246
Q ss_pred HHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCC
Q 000107 1589 IGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDER 1668 (2191)
Q Consensus 1589 L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~ 1668 (2191)
|+++|++ +.|++||+|||+. ++|+.+. . .||||+|+|||+|+ .
T Consensus 50 l~~~l~d--~~kV~hn~K~Dl~---~~Gi~~~-~-----------------------------~fDT~laAyLL~p~--~ 92 (540)
T 4dfk_A 50 LRDLKEA--RGLLAKDLSVLAL---REGLGLP-P-----------------------------GDDPMLLAYLLDPS--N 92 (540)
T ss_dssp HTTCSSB--CSTTHHHHHHHHH---HTTCCCC-B-----------------------------CCCHHHHHHHHCTT--C
T ss_pred HHHHHcC--CCEEEeccHHHHH---HcCCCCC-c-----------------------------ceeHHHHHHHhCCC--C
Confidence 7889988 8899999999998 6676543 2 58999999999997 6
Q ss_pred CCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHH
Q 000107 1669 SSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL-VSEELIEALLNIEIPLVNVLA 1747 (2191)
Q Consensus 1669 ~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L-~~~~L~~l~~~iEmpl~~vLa 1747 (2191)
|+++ .++.++++. .| .++..|+.++++|+..|.++| ++.++.++|.++|||++.+|+
T Consensus 93 ~~L~---~La~~yl~~--------~g-----------k~a~~DA~~t~~L~~~L~~~L~~~~~~~~~~~~iE~pl~~vl~ 150 (540)
T 4dfk_A 93 TTPE---GVARRYGGE--------WT-----------EEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLA 150 (540)
T ss_dssp CCHH---HHHHHHTSC--------CC-----------SCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTHHHHHHHHH
T ss_pred CCHH---HHHHHHhhh--------hc-----------cchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Confidence 7644 455555543 11 135689999999999999999 788999999999999999999
Q ss_pred HHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHH-H
Q 000107 1748 DMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL-D 1826 (2191)
Q Consensus 1748 ~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL-~ 1826 (2191)
+||.+||+||.+.++++..++.+++++++++||+++|.+||++||+||+++||++||||+++. ++|+++||++++| +
T Consensus 151 ~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~k--t~ktg~st~~~vL~e 228 (540)
T 4dfk_A 151 HMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGK--TEKTGKRSTSAAVLE 228 (540)
T ss_dssp HHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCB--CTTTCCBCCCHHHHH
T ss_pred HHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCC--CCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997653 2255699999999 9
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCcccccccccccccccc
Q 000107 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNED 1906 (2191)
Q Consensus 1827 ~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~ 1906 (2191)
+|+..||++..|++||++.|+++||++++++.++ ..||||||+|+|++|+||||||++|||||||+ +++.
T Consensus 229 ~L~~~~p~~~~ile~R~l~Kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlSs~~PNlQniP~------~~~~ 298 (540)
T 4dfk_A 229 ALREAHPIVEKILQYRELTKLKSTYIDPLPDLIH----PRTGRLHTRFNQTATATGRLSSSDPNLQNIPV------RTPL 298 (540)
T ss_dssp HTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGCC----TTTCSBCCEEESSCCSSSCCEEESSCCSCCCC------SSHH
T ss_pred HhhhcChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCEEeeeeecCcccccCccccCCcceeeec------cCcc
Confidence 9999999999999999999999999998866542 35799999999999999999999999999994 5556
Q ss_pred ccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChh
Q 000107 1907 IYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQ 1986 (2191)
Q Consensus 1907 g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~ 1986 (2191)
|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||++
T Consensus 299 g~-----------~iR~~f~a~-~G~~lv~aDySqiElRvlAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~~~v~~~ 365 (540)
T 4dfk_A 299 GQ-----------RIRRAFIAE-EGWLLVALDYSQIELRVLAHLSGDENLIRVFQE-GRDIHTETASWMFGVPREAVDPL 365 (540)
T ss_dssp HH-----------HHHTTEECC-TTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHT-TCCHHHHHHHHHHTCCGGGCCHH
T ss_pred hH-----------hhhheEeCC-CCCEEEEecHHHHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHcCCChhhcCHH
Confidence 76 799999997 999999999999999999999999999999998 89999999999999999999999
Q ss_pred hhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCC
Q 000107 1987 ERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGN 2066 (2191)
Q Consensus 1987 ~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~ 2066 (2191)
+|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++++|+++|||+|++|||||+|+|++.|
T Consensus 366 ~R~~aK~~~fg~~YG~~~~~La~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~~~s~~ 445 (540)
T 4dfk_A 366 MRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445 (540)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSS
T ss_pred HHhHHHHHHHhhhhCCchhHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCcEECCCCCeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHH
Q 000107 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAV 2146 (2191)
Q Consensus 2067 ~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~ 2146 (2191)
...|+.+||+|+|+|||||||||+|.||++++++|.+. +++|+|||||||+||||++++++++
T Consensus 446 ~~~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~l~~~-----------------~~~l~lqVHDElv~ev~~~~~~~~~ 508 (540)
T 4dfk_A 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEM-----------------GARMLLQVHDELVLEAPKERAEAVA 508 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TCEEEEECSSEEEEEEEGGGHHHHH
T ss_pred HHHHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHHHHhc-----------------CCeEEEEEcceEEEEeCHHHHHHHH
Confidence 99999999999999999999999999999999998763 2799999999999999999999999
Q ss_pred HHHHHHHhcccCcccceEEEeeccCCccccCC
Q 000107 2147 SLVQKCMESAALLLVPLLVKIQVGSTWGSLEP 2178 (2191)
Q Consensus 2147 ~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~~ 2178 (2191)
++|+++||+|+.|.|||.|++++|+||+++|+
T Consensus 509 ~~v~~~Me~a~~l~VPl~v~~~~G~~W~e~~~ 540 (540)
T 4dfk_A 509 RLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE 540 (540)
T ss_dssp HHHHHHHHTSSCCSSCCCEEEEEESBHHHHHC
T ss_pred HHHHHHHhcccCCCCceEEeeeecCCHHHhCc
Confidence 99999999999999999999999999999986
|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-106 Score=1078.82 Aligned_cols=527 Identities=30% Similarity=0.448 Sum_probs=473.3
Q ss_pred CCeEEEEeeccCCcccCCCccceE-EEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHH
Q 000107 1508 THEFYFDIHYDKHSEANSGVLFEI-HGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRW 1586 (2191)
Q Consensus 1508 ~~~~afD~e~~~~~~~~s~~~~~i-~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1586 (2191)
...++||+++.+ .....+ +| ||+.++.++|+|+ ++
T Consensus 304 ~~~va~d~et~~------~~~~~l~vg--~a~~~g~a~yvp~-~~----------------------------------- 339 (832)
T 1bgx_T 304 GAFVGFVLSRKE------PMWADLLAL--AAARGGRVHRAPE-PY----------------------------------- 339 (832)
T ss_dssp TCCBEEECSSSC------TTTCCCCEE--ECBSSSEEECCSC-HH-----------------------------------
T ss_pred CceEEEEEecCC------cccCceeEE--EEEcCCCEEEEEC-CH-----------------------------------
Confidence 355889987642 112356 66 7788888999876 20
Q ss_pred HHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCC
Q 000107 1587 KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDD 1666 (2191)
Q Consensus 1587 ~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~ 1666 (2191)
+.|+++|+++.+ |+||++++|+++||.+. . .+|||||+|||+|+
T Consensus 340 ~~Lk~lLed~~i-----n~K~d~~~L~~~Gi~~~-~-----------------------------~~Dt~laayLl~p~- 383 (832)
T 1bgx_T 340 KALRDLKEARGL-----LAKDLSVLALREGLGLP-P-----------------------------GDDPMLLAYLLDPS- 383 (832)
T ss_dssp HHHHHCSSBCBT-----THHHHHHHHHHHTCCCC-B-----------------------------CCCHHHHHHHHCTT-
T ss_pred HHHHHHHhCCCC-----ChHHHHHHHHHcCCccC-c-----------------------------ccCHHHHHHHcCCC-
Confidence 247889999876 99999999999988765 3 48999999999997
Q ss_pred CCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHH
Q 000107 1667 ERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLV-SEELIEALLNIEIPLVNV 1745 (2191)
Q Consensus 1667 ~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~-~~~L~~l~~~iEmpl~~v 1745 (2191)
.|++++|...+ +. .|. + .|+ .|+.++++|+..|+++|. +.++.++|.++|||++.+
T Consensus 384 -~~~l~~l~~~~----gk----------~~~---~----~ya-~da~~~~~l~~~l~~~L~~~~~~~~l~~~iE~pl~~v 440 (832)
T 1bgx_T 384 -NTTPEGVARRY----GG----------EWT---E----EAG-ERAALSERLFANLWGRLEGEERLLWLYREVERPLSAV 440 (832)
T ss_dssp -CCSTTHHHHHH----SC----------CCC---S----SHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHH
T ss_pred -CCCHHHHHHHh----CC----------Cch---H----HHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77777765443 11 121 1 166 699999999999999999 889999999999999999
Q ss_pred HHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHH
Q 000107 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL 1825 (2191)
Q Consensus 1746 La~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL 1825 (2191)
|++||.+||+||.+.++++..++.+++++++++||+++|.+||++||+||+++||++||||+++.++ .+|.+||++++|
T Consensus 441 l~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kkt~-ktG~~sT~~~vL 519 (832)
T 1bgx_T 441 LAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTE-KTGKRSTSAAVL 519 (832)
T ss_dssp HHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCHHHHTTTTTTSCCCCCCCSSC-CSSSSGGGTSTT
T ss_pred HHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHhcCCCCccccc-ccCCccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998653220 234489999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccc
Q 000107 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNE 1905 (2191)
Q Consensus 1826 ~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~ 1905 (2191)
++|+..||++..|++||+++|+++||+++++++++ ..+|||||+|+|++|+||||||++||||||| ++++
T Consensus 520 ~~l~~~~p~~~~ile~R~l~Kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlSs~~PNLQNiP------~~~~ 589 (832)
T 1bgx_T 520 EALREAHPIVEKILQYRELTKLKSTYIDPLPDLIH----PRTGRLHTRFNQTATATGRLSSSDPNLQNIP------VRTP 589 (832)
T ss_dssp TTGGGTCSTTHHHHTHHHHSCSBTTBCCCTTTSSC----TTTCSBCCEEESSCCSSSCCEEESSCTTSCC------CSST
T ss_pred HHhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCEEeeeeEecccceeeeecCCccccccc------cCch
Confidence 99988899999999999999999999998876543 3579999999999999999999999999999 4566
Q ss_pred cccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCCh
Q 000107 1906 DIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGS 1985 (2191)
Q Consensus 1906 ~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~ 1985 (2191)
.|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||+
T Consensus 590 ~g~-----------~iR~~Fva~-~G~~lv~aDySqiElRilAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~e~vt~ 656 (832)
T 1bgx_T 590 LGQ-----------RIRRAFIAE-EGWLLVALDYSQIELRVLAHLSGDENLIRVFQE-GRDIHTETASWMFGVPREAVDP 656 (832)
T ss_dssp TTT-----------TTGGGBCCC-SSCCEEEEEESSHHHHHHHHTTTCTTHHHHHHH-TCCHHHHHHHHHHTCCTTSCCT
T ss_pred hhH-----------HhhheEeCC-CCCEEEEechhhhHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhcCH
Confidence 777 799999996 999999999999999999999999999999998 8999999999999999999999
Q ss_pred hhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCC
Q 000107 1986 QERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFG 2065 (2191)
Q Consensus 1986 ~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~ 2065 (2191)
++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++++++.|+++|||+|++|||||+|+|+++
T Consensus 657 ~~R~~aK~~nfgi~YG~~~~gLa~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~i~s~ 736 (832)
T 1bgx_T 657 LMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEAR 736 (832)
T ss_dssp THHHHHHHHHHHTTSCCCHHHHHHHSSCCHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHTTSSCCCSSCCCCCCGGGSCS
T ss_pred HHHHHHHHHHHhhhcCCchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHCCeEEecCCCEEECCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHH
Q 000107 2066 NNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEA 2145 (2191)
Q Consensus 2066 ~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v 2145 (2191)
|...|+.++|+|+|+|||||||||+|.||++++++|... +++|||||||||+||||+++++++
T Consensus 737 ~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~-----------------~~~lvlqVHDElv~evp~~~~~~~ 799 (832)
T 1bgx_T 737 VKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEM-----------------GARMLLQVHDELVLEAPKERAEAV 799 (832)
T ss_dssp SHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHH-----------------TCEEEEEETTEEEEEC----CHHH
T ss_pred CcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHhC-----------------CCeEEEEeccEEEEEcCHHHHHHH
Confidence 999999999999999999999999999999999988641 579999999999999999999999
Q ss_pred HHHHHHHHhcccCcccceEEEeeccCCccccCC
Q 000107 2146 VSLVQKCMESAALLLVPLLVKIQVGSTWGSLEP 2178 (2191)
Q Consensus 2146 ~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~~ 2178 (2191)
+++|+++|++|+.|.|||.|++++|+||+++||
T Consensus 800 ~~~v~~~M~~a~~l~VPl~v~~~~G~~W~e~~e 832 (832)
T 1bgx_T 800 ARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE 832 (832)
T ss_dssp HHHHHHHHHSSSCCSSCCCEECCEESSHHHHCC
T ss_pred HHHHHHHHhccCCCCCeEEEecccCCCHHHhcC
Confidence 999999999999999999999999999999986
|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-96 Score=979.82 Aligned_cols=504 Identities=20% Similarity=0.227 Sum_probs=435.8
Q ss_pred HHHHHHHHhhccCCccEEEech-HHHHHHHHhc-------Ccccc-cccCccccccccccccccccccccccCCCCccch
Q 000107 1584 QRWKRIGEIMEKRDVRKFTWNM-KVQIQVLKHA-------AVSIQ-RFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGID 1654 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~~v~kv~hNl-K~dl~vL~~~-------gi~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1654 (2191)
..++.|.++|+ +++.|++||+ |||+.+|.++ |+.+. + .++|
T Consensus 41 ~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~-----------------------------~~~D 90 (698)
T 1x9m_A 41 AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRE-----------------------------NCID 90 (698)
T ss_dssp HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGG-----------------------------GEEE
T ss_pred HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCC-----------------------------cchh
Confidence 35678999999 8899999999 9999999876 66554 2 2699
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHhh-------ChHH-------HHH-------hhcc-C---chhhhhHHHHhhhHH
Q 000107 1655 MCIVSWILWPDDERSSNPNLEKEVKKRL-------SSEA-------AAA-------ANRS-G---RWKNQMRRAAHNGCC 1709 (2191)
Q Consensus 1655 t~lAawLL~P~~~~~~l~~L~~~~~~~l-------~~e~-------~~~-------~~~~-g---~~~~~~~~~~~~ya~ 1709 (2191)
||+|+|||+|+...++++.|.+. ++ +... ... .+.. . .|. .+.+.+.+||+
T Consensus 91 TmlaayLL~p~~~~~~L~~La~~---~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~-~~~~~~~~YA~ 166 (698)
T 1x9m_A 91 TLVLSRLIHSNLKDTDMGLLRSG---KLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWW-NFNEEMMDYNV 166 (698)
T ss_dssp HHHHHHHHTTTSCCCTTTTSCGG---GSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGT-SCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHH---HcccchhhhcccccccccCHHHHhCcccccccccccccCCcc-ccCHHHHHHHH
Confidence 99999999998778877776443 32 1111 011 1111 1 233 23355788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHH
Q 000107 1710 RRVAQTRALCSVLWKLLVSEELI---------------EALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRY 1774 (2191)
Q Consensus 1710 ~Da~~t~~L~~~L~~~L~~~~L~---------------~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~ 1774 (2191)
.||.+|++|+..|.++|.+.++. .+|.++|||++.+|++||.+||+||.+.+.++..++.+++++
T Consensus 167 ~Da~~t~~L~~~L~~~L~~~~~~l~~~~~~~~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~ 246 (698)
T 1x9m_A 167 QDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSE 246 (698)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCTTSCTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccccccccchhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877664 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---------------------------------hC------------------------------------C
Q 000107 1775 LEKKAYTL---------------------------------AG------------------------------------M 1785 (2191)
Q Consensus 1775 le~~i~~l---------------------------------~G------------------------------------~ 1785 (2191)
++++++++ +| .
T Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (698)
T 1x9m_A 247 LLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHV 326 (698)
T ss_dssp HHHHHHHHSCCEEEECSCCBCCBCTTTCCBCTTSCCBBCCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEE
T ss_pred HHHHHHHHhhhhccccccchhhccccccchhcccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 99999997 67 6
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhh----cCCcHHHHHHHHHHHHHHHhHH---HHHHHH
Q 000107 1786 KFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRH----EHPIVPVIKEHRTLAKLLNCTL---GSICSL 1858 (2191)
Q Consensus 1786 ~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~----~hpi~~~ile~R~l~Kllsty~---~~l~~~ 1858 (2191)
+||++||+||+++||+ +|||+++. +.+|.|||++++|++|+. .||++..|++||++.|+++||+ ++++..
T Consensus 327 ~fn~~S~~ql~~~L~~-lgl~~~~~--t~~G~~st~~~vL~~l~~~~~~~~p~~~~lle~r~l~kl~sty~~~~~~l~~~ 403 (698)
T 1x9m_A 327 VFNPSSRDHIQKKLQE-AGWVPTKY--TDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRY 403 (698)
T ss_dssp CCCTTCHHHHHHHHHH-TTCCCCCB--CTTSCBCCSHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHH
T ss_pred ccCCCCHHHHHHHHHH-CCCCCCCc--CCCCCcCCCHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 8999999999999999 99997543 334558999999999986 7999999999999999999999 777665
Q ss_pred hhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccc--------cCC
Q 000107 1859 ARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIP--------SQE 1930 (2191)
Q Consensus 1859 ~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~--------~~~ 1930 (2191)
+ +.||||||+|+|+||+||||||++|||||||+ .+++.|+ .||+||+| + +
T Consensus 404 v-----~~dgrih~~~~~~gt~TGRlSs~~PNlQniP~-----~~~~~g~-----------~iR~~F~a~~~~~~~~~-~ 461 (698)
T 1x9m_A 404 V-----AEDGKIHGSVNPNGAVTGRATHAFPNLAQIPG-----VRSPYGE-----------QCRAAFGAEHHLDGITG-K 461 (698)
T ss_dssp C-----CTTSEECCEEETTCSTTSCCEEESSCTTCCCC-----TTSTTHH-----------HHHHTBSGGGSBCTTTC-C
T ss_pred c-----CCCCeEeeeEEeccccccccccCCccceeecc-----cccccch-----------hhhheeecCcccccCCC-C
Confidence 4 35799999999999999999999999999995 2455666 89999999 6 8
Q ss_pred CeEEEEeccchhHHHHHHHhc---CChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhh
Q 000107 1931 NWILLAADYSQIELRLMAHFS---KDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007 (2191)
Q Consensus 1931 G~~lvsaDySQIELRilAhlS---~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~L 2007 (2191)
||+||+||||||||||||||| +|+.|+++|++ | |||+.||+ +||+|+ |+.||++|||++||||+++|
T Consensus 462 G~~lv~aDySqiElRilAhls~~~~D~~l~~af~~-g-DiH~~tA~-~~gv~~-------R~~aK~~nfg~~YG~g~~~L 531 (698)
T 1x9m_A 462 PWVQAGIDASGLELRCLAHFMARFDNGEYAHEILN-G-DIHTKNQI-AAELPT-------RDNAKTFIYGFLYGAGDEKI 531 (698)
T ss_dssp BCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHH-S-CHHHHHHH-HSCCSS-------HHHHHHHHHHHHTTCCHHHH
T ss_pred CCEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHhC-C-CHhHHHHH-HhCCch-------HhhhHHHHHccccCCCHHHH
Confidence 999999999999999999999 99999999998 7 99999999 999863 99999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHhChhHHHH--------------HHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhh
Q 000107 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASW--------------LHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKA 2073 (2191)
Q Consensus 2008 a~~l~is~~eA~~~i~~f~~~yp~v~~~--------------~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~a 2073 (2191)
|+++|||.+||++++++||++||+|++| ++.+++.|+++|||+|++||||++. +
T Consensus 532 a~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~gyv~tl~GRrr~~r----------~-- 599 (698)
T 1x9m_A 532 GQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR----------S-- 599 (698)
T ss_dssp HTTTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHHTTBC----------CCBSCSEEECTTSCEEECS----------C--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCcCHHHHHHHhHhhhhhhhhHHHHHHHHHHhCCeEEccCCCeeecc----------c--
Confidence 9999999999999999999999999999 8888999999999999999999982 2
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhh-HHHHHHHHHHH
Q 000107 2074 QRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSV-IKEAVSLVQKC 2152 (2191)
Q Consensus 2074 eRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~-~~~v~~~vk~~ 2152 (2191)
+|+|+|+|||||||||+|.||+++++.|...+.. +.+..+++||+||||||+||||+++ +++++.+|+++
T Consensus 600 ~r~a~N~~iQGsaAdi~k~am~~i~~~l~~~~~~---------~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~ 670 (698)
T 1x9m_A 600 PHAALNTLLQSAGALICKLWIIKTEEMLVEKGLK---------HGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEA 670 (698)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------BSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC---------cccCcceeEEEEeccEEEEEecchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999764211 0123478999999999999999998 99999999999
Q ss_pred Hhccc---CcccceEEEeeccCCccccC
Q 000107 2153 MESAA---LLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2153 Me~a~---~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|++|. .+.|||.|++++|+||+++|
T Consensus 671 M~~a~~~~~l~vPl~~~~~~G~~W~~~~ 698 (698)
T 1x9m_A 671 MRWVGDHWNFRCLLDTEGKMGPNWAICH 698 (698)
T ss_dssp HHHHHHHTTCSSCCCEEEEEESSTTTTC
T ss_pred HHhhhhccCCCeeEEEecccCcCHHhcC
Confidence 99997 79999999999999999987
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-79 Score=873.27 Aligned_cols=707 Identities=19% Similarity=0.245 Sum_probs=563.5
Q ss_pred hhccccCCCCCccceeccCCC-CcccccccCCCCCCccCCCCCCCCCCCcCCcCCC----CcHHHHHHHHHcCCCCCCHH
Q 000107 454 VHERKLDISSQGIDSITSDSP-TNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSW----LPSEICSIYKKRGISKLYPW 528 (2191)
Q Consensus 454 ~~~~e~~~~~~y~i~v~Sd~w-~~e~~~pi~~~~~~e~~~P~~~~~~~e~l~L~~~----Lp~~l~~~l~~~Gi~~l~p~ 528 (2191)
++..+ +++++|+++++||+| +++...|++|++ +++|...+++++++|+++. |..+..+.+...+|..|+|+
T Consensus 855 ~p~~~-~~p~~~~i~~~sd~w~~~~~~~~~~~~~---~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpi 930 (1724)
T 4f92_B 855 VPVFE-PLPPQYFIRVVSDRWLSCETQLPVSFRH---LILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPI 930 (1724)
T ss_dssp EECCS-SCCSEEEEEEEESSSTTCEEEEEEECTT---CCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHH
T ss_pred EECCC-CCCCeEEEEEEEccccCCCceeeecccc---ccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHH
Confidence 34444 678999999999999 999999999998 9999999999999999874 55566666667789999999
Q ss_pred HHHhhhhccc-ccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhh-ccCCeEEEEe
Q 000107 529 QVECLHVDGV-LQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYY 605 (2191)
Q Consensus 529 Q~eal~~~~i-l~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~-~lg~~V~~~~ 605 (2191)
|.+||+. + ..++|++|+||||||||++|+++|++.+.+ .++++|||+|+++||.|++++|.+.+. .+|++|..++
T Consensus 931 Q~q~~~~--l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt 1008 (1724)
T 4f92_B 931 QTQVFNT--VYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT 1008 (1724)
T ss_dssp HHHHHHH--HHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC
T ss_pred HHHHHHH--HhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE
Confidence 9999986 5 467899999999999999999999999886 467899999999999999999987665 4899999998
Q ss_pred ccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCC
Q 000107 606 GNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684 (2191)
Q Consensus 606 G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~ 684 (2191)
|+.... ....+++|+|||||+|+.+++++.....+++|++||+||+|+|++. ||..++.++.+++++..+
T Consensus 1009 Gd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~-------- 1079 (1724)
T 4f92_B 1009 GETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQ-------- 1079 (1724)
T ss_dssp SCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHT--------
T ss_pred CCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhh--------
Confidence 875421 1223579999999999999998777777899999999999999985 999999999999988653
Q ss_pred CCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccc-----cccccccccceEEEEeccccccchhhHHHHHHHhhc
Q 000107 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAAL-----YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759 (2191)
Q Consensus 685 ~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l-----~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~ 759 (2191)
.+.++|+|+||||++|++++++||++.. |.+++||+|++.++........ .....
T Consensus 1080 -----------~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~-~~~~~-------- 1139 (1724)
T 4f92_B 1080 -----------IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT-QTRLL-------- 1139 (1724)
T ss_dssp -----------TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH-HHHHH--------
T ss_pred -----------cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc-hhhhh--------
Confidence 3467999999999999999999999763 7889999999998874332211 11100
Q ss_pred cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhh
Q 000107 760 LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839 (2191)
Q Consensus 760 ~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~ 839 (2191)
.....+...+. ....++++||||+||+.|+.+|..|...+............ ........+. ...|..|.
T Consensus 1140 ---~~~~~~~~~i~-~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~---~~~d~~L~ 1209 (1724)
T 4f92_B 1140 ---SMAKPVYHAIT-KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLE---KLSDSTLK 1209 (1724)
T ss_dssp ---TTHHHHHHHHH-HHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHT---TCCCHHHH
T ss_pred ---hhcchHHHHHH-HhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHh---hcccHHHH
Confidence 01112222332 23467899999999999999999998876543221100000 1111222222 23488999
Q ss_pred hhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC------CCCcccCcccccccccc
Q 000107 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR------IGRDFIDGTRYRQMAGR 913 (2191)
Q Consensus 840 ~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~------~g~~~is~~~y~QmiGR 913 (2191)
+++.+||++|||||++++|..||+.|++|.++|||||+++++|||+|+++|||.... .+..+++..+|+||+||
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999997542 12235789999999999
Q ss_pred cCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCC---
Q 000107 914 AGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNST--- 990 (2191)
Q Consensus 914 AGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~--- 990 (2191)
|||+|+|..|+|+++|++.+...+.+++.++. |++|+|.. .+...++..|+.|.+.+.+|+.+|+.+||++..
T Consensus 1290 AGR~g~d~~G~avll~~~~~~~~~~~ll~~~~-pveS~L~~---~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~ 1365 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL-PVESHLDH---CMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQ 1365 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCB-CCCCCGGG---SCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHH
T ss_pred ccCCCCCCceEEEEEecchHHHHHHHHhCCCC-ceeeeccc---chHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhc
Confidence 99999999999999999999999999998876 79999965 455668889999999999999999999998531
Q ss_pred Cc--------c-----hhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccc
Q 000107 991 KP--------F-----QDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVL 1057 (2191)
Q Consensus 991 ~~--------~-----~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl 1057 (2191)
.| . ....+.++.+|++|.+.+||+.+++. .+.+|++|++++..+|+|.+++.++..|+... .+
T Consensus 1366 nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~-~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~ 1441 (1724)
T 4f92_B 1366 NPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKT---KV 1441 (1724)
T ss_dssp SGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTT-EEEECHHHHHHHHTTCCHHHHHHHHHHCCTTC---CH
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCC-CEeecHHHHHHHHHCCCHHHHHHHHHhccccC---CH
Confidence 11 0 11235577899999999999876543 47899999999999999999999888886542 23
Q ss_pred cCccceeeeeccCC-CCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhh
Q 000107 1058 ASDLHLVYLSTPIN-VEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRL 1136 (2191)
Q Consensus 1058 ~~dlhllylvtp~~-~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1136 (2191)
.+-||+++..+.+. ..+..++..+ +.++....++....
T Consensus 1442 ~~~L~il~~a~ef~~i~~R~~E~~~------------------------l~~l~~~~~~~~~~----------------- 1480 (1724)
T 4f92_B 1442 RGLIEIISNAAEYENIPIRHHEDNL------------------------LRQLAQKVPHKLNN----------------- 1480 (1724)
T ss_dssp HHHHHHHHTSGGGTTCCCCTTHHHH------------------------HHHHHHHSSSCCSS-----------------
T ss_pred HHHHHHhcCCcccccccccccHHHH------------------------HHHHHhhCCCCCCc-----------------
Confidence 44566555544432 1223333222 22222222322110
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Q 000107 1137 GITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIA 1216 (2191)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~ 1216 (2191)
.... . ..++++++|++|++++++. ..| +||+++++++|.|+++++..||..+||...+..+.
T Consensus 1481 ----~~~~------~--~~~K~~lLlqa~~~r~~l~---~~~---~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~ 1542 (1724)
T 4f92_B 1481 ----PKFN------D--PHVKTNLLLQAHLSRMQLS---AEL---QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAM 1542 (1724)
T ss_dssp ----CCTT------C--HHHHHHHHHHHHHTTCCCC---HHH---HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred ----cccC------C--HHHHHHHHHHHHHCCCcCC---hHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000 0 2356899999999999875 244 69999999999999999999999999999889999
Q ss_pred HHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1217 KFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1217 ~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
.|.+||.+|+++|+++|++||+|++.|||+||++||+|+.||++++++++..+|..
T Consensus 1543 ~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~ 1598 (1724)
T 4f92_B 1543 ELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQL 1598 (1724)
T ss_dssp HHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCC
T ss_pred HHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999998743
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-78 Score=816.51 Aligned_cols=680 Identities=25% Similarity=0.375 Sum_probs=533.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.+++.||.+|+|+|.++++. .+.+++|++++||||||||++|++++++.+...+++++|++|+++||.|+++
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~ 93 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYL 93 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999974 4678999999999999999999999999888778999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+++ .+..+|++|..++|+..... ...+++|+|||||++..++++ ...+++++++|||||+|++++..||..++.++
T Consensus 94 ~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~ 170 (715)
T 2va8_A 94 TFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVT 170 (715)
T ss_dssp HHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHH
T ss_pred HHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHH
Confidence 995 45667999999888764321 123689999999999998876 44458999999999999999888999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEecc------
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGN------ 741 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~------ 741 (2191)
.+++ ++|+|+||||++|.+++++|+++..+...+||+|+..++....
T Consensus 171 ~~~~---------------------------~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 171 IRAK---------------------------RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp HHHH---------------------------TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred Hhcc---------------------------cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccce
Confidence 8883 4799999999999999999999999999999999987765332
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
.+...... .... ...+.+..++.+.+..++++||||++++.|+.++..|.+.+..... ...+...+.
T Consensus 224 ~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~----~~~~~~~~~ 290 (715)
T 2va8_A 224 NVIFKDNT-------TKKV--HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSL----DENALSEIL 290 (715)
T ss_dssp EEEETTSC-------EEEE--ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCC----CHHHHHHHH
T ss_pred eeecCcch-------hhhc--ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccC----ChHHHHHHH
Confidence 11000000 0000 0023455666666778899999999999999999999875432100 001112222
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec----C--
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ----P-- 895 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~----p-- 895 (2191)
...+.+.......+..|.+++..||++|||+|+.++|..|++.|++|.++|||||+++++|||+|+++|||+. +
T Consensus 291 ~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~ 370 (715)
T 2va8_A 291 KQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKK 370 (715)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC------
T ss_pred HHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeecccc
Confidence 2333332112223567888999999999999999999999999999999999999999999999999999983 2
Q ss_pred -CCCCcccCcccccccccccCCCCCCCceEEEEEeChhh-HH-HHHhhhccCCCCcccccccccchhhHHHHHHHhcccc
Q 000107 896 -RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE-VK-KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIV 972 (2191)
Q Consensus 896 -~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~-~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~ 972 (2191)
..+..+++..+|.||+|||||.|.|..|.||+++++.+ .. .+.+++...+++++|.|... ..+...+|.+++.|.+
T Consensus 371 ~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~-~~l~~~~l~~~~~g~~ 449 (715)
T 2va8_A 371 IAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSE-RAFYTFLLGILSAEGN 449 (715)
T ss_dssp --------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSH-HHHHHHHHHHHHHHCS
T ss_pred CCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCch-hHHHHHHHHHHhcccc
Confidence 11225788999999999999999999999999998765 33 45568888888999998642 2466678899999988
Q ss_pred cCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhc
Q 000107 973 QTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAR 1052 (2191)
Q Consensus 973 ~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~ 1052 (2191)
.+.+|+.+|+.+||++.+.+ ...+..++++|.+.|+|+.++ +.+.+|++|+.++.+|++|..+++++..++...
T Consensus 450 ~~~~~~~~~l~~~~~~~~~~----~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 523 (715)
T 2va8_A 450 LSEKQLENFAYESLLAKQLV----DVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHK 523 (715)
T ss_dssp EEHHHHHHHHTTSSSCHHHH----HHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhhHHHhhcc----hHHHHHHHHHHHHCcCEeecC--CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhcc
Confidence 89999999999999875433 234788999999999997542 347899999999999999999999999998753
Q ss_pred ccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcC-CCccccccccccccCccch
Q 000107 1053 EGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHG-APMRISSKLRDSTKGLHGK 1131 (2191)
Q Consensus 1053 ~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 1131 (2191)
. .++.++|++++....- ++ .+.+..+.+ .+.+.+.. .......
T Consensus 524 ~----~~~~~~l~~i~~~~e~--~~---~~~r~~e~~---------------~l~~~~~~~~~~~~~~------------ 567 (715)
T 2va8_A 524 A----SCELAYLHLLAFTPDG--PL---VSVGRNEEE---------------ELIELLEDLDCELLIE------------ 567 (715)
T ss_dssp C----CCHHHHHHHHHHSTTS--CC---CCCCHHHHH---------------HHHHHHTTCSSCCSSC------------
T ss_pred C----CCHHHHHHHhhcCccc--cc---CccChHHHH---------------HHHHHHHhcchhhccc------------
Confidence 2 3567888877654211 11 000111111 11111110 0000000
Q ss_pred hhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhH
Q 000107 1132 LEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDL 1211 (2191)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~ 1211 (2191)
. ..........+.+||++++|++|++|+++++|+++|++++|++|+++++|.|+++++.+||+.+||..+
T Consensus 568 ---------~-~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~ 637 (715)
T 2va8_A 568 ---------E-PYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEH 637 (715)
T ss_dssp ---------C-CSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------c-cccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 0 000001223447899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHH
Q 000107 1212 EGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKK 1291 (2191)
Q Consensus 1212 ~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~ 1291 (2191)
+..+..|++||.|||++|++||++||||++.|||+||++||+|++||+ +++++|.++|. .++|++
T Consensus 638 ~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~--------------~~~~~~ 702 (715)
T 2va8_A 638 ADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLG--------------QKLGEK 702 (715)
T ss_dssp HHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHC--------------HHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhC--------------hhHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999962 467888
Q ss_pred HHHHHHHHH
Q 000107 1292 IKNGARKIV 1300 (2191)
Q Consensus 1292 I~~~A~~l~ 1300 (2191)
|+++|++.+
T Consensus 703 i~~~~~~~~ 711 (715)
T 2va8_A 703 VVQEAARLL 711 (715)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888776643
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-78 Score=814.43 Aligned_cols=666 Identities=26% Similarity=0.413 Sum_probs=527.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.++++||.+|+|+|.++++. .+.+++|++++||||||||++|++++++.+...+++++|++|+++||.|+++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~ 86 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKS-GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQ 86 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTT-TGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH
Confidence 789999999999999999999999974 4778999999999999999999999999888778999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+++. +..+|++|..++|+..... ...+++|+|||||+++.++++ ...+++++++|||||+|++++..||..++.++
T Consensus 87 ~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 87 EFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp HTGG-GGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHH-HHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHH
Confidence 9954 4567999999999764322 223689999999999998886 45568999999999999999988999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
.+++ .++|+|+||||++|++++++|+++..+...+||+|+..++.....+....
T Consensus 164 ~~l~--------------------------~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 164 AHML--------------------------GKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp HHHB--------------------------TTBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETT
T ss_pred HHhh--------------------------cCCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccc
Confidence 9983 25899999999999999999999999999999999988765443322111
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
... . ..+.+..++.+.+..++++||||+|++.|+.++..|.+.+..... ..+...+....+.+
T Consensus 218 ~~~--------~----~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~-----~~~~~~~~~~~~~i 280 (720)
T 2zj8_A 218 GSI--------D----RFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLT-----KPEIRALNELADSL 280 (720)
T ss_dssp SCE--------E----ECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSC-----HHHHHHHHHHHHTS
T ss_pred cch--------h----hhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcC-----hhhHHHHHHHHHHH
Confidence 000 0 011223455555667899999999999999999999876543110 01111112222222
Q ss_pred hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee----cCCCCCcccC
Q 000107 828 RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR----QPRIGRDFID 903 (2191)
Q Consensus 828 ~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~----~p~~g~~~is 903 (2191)
. ....+..|.+++.+||++|||+|+.++|..|++.|++|.++|||||+++++|||+|+++|||+ ++..|..+++
T Consensus 281 ~--~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s 358 (720)
T 2zj8_A 281 E--ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358 (720)
T ss_dssp C--SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECC
T ss_pred h--cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCC
Confidence 1 111244588889999999999999999999999999999999999999999999999999998 3323445789
Q ss_pred cccccccccccCCCCCCCceEEEEEeChhhHHH-HHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHH
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK-IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~-~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l 982 (2191)
..+|.||+|||||.|.|..|.||+++++.+... +.+++...+++++|++... ..+...++..++.|.+.+.+|+.+|+
T Consensus 359 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~-~~l~~~ll~~i~~~~~~~~~d~~~~l 437 (720)
T 2zj8_A 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNE-SNLRSQVLALIATFGYSTVEEILKFI 437 (720)
T ss_dssp HHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCH-HHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCch-hhHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999877554 4468888889999998542 24666788888999899999999999
Q ss_pred HhhhcCCCCcc-hhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCcc
Q 000107 983 RCTLLNSTKPF-QDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061 (2191)
Q Consensus 983 ~~tll~~~~~~-~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dl 1061 (2191)
.+||++.+.+. ....+.+..++++|.+.|+|.... +..+.+|++|+.++.++|+|..++++++.++...+. .++.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 513 (720)
T 2zj8_A 438 SNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKD---PNPI 513 (720)
T ss_dssp HTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHS---CCHH
T ss_pred HhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccC---CCHH
Confidence 99998765442 234467889999999999997432 335789999999999999999999999999875221 3567
Q ss_pred ceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHh-cC---CCccccccccccccCccchhhhhhc
Q 000107 1062 HLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMA-HG---APMRISSKLRDSTKGLHGKLEYRLG 1137 (2191)
Q Consensus 1062 hllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1137 (2191)
++|++++....- ++ ++.+..+...+. .++.... .. .|+.
T Consensus 514 ~~l~i~~~~~e~--~~---i~~r~~e~~~l~-----------~~~~~~~~~~~~~~p~~--------------------- 556 (720)
T 2zj8_A 514 GIFHLISLTPDI--TP---FNYSKREFERLE-----------EEYYEFKDRLYFDDPYI--------------------- 556 (720)
T ss_dssp HHHHHHHTSTTC--CC---CCCCHHHHHHHH-----------HHHHHHGGGCSSCCTTS---------------------
T ss_pred HHHHHhccCccc--cc---cccCHHHHHHHH-----------HHHHhcccccccccccc---------------------
Confidence 888888765321 00 000001111110 0011100 00 0100
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 000107 1138 ITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAK 1217 (2191)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~ 1217 (2191)
. ... +......+.|||++++|++||+|+|+.+|+++|++.+|++|+++++|.|+++++..||..+||..+...+..
T Consensus 557 --~-~~~-~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~ 632 (720)
T 2zj8_A 557 --S-GYD-PYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLET 632 (720)
T ss_dssp --S-CCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred --c-ccc-chhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 0 000 000223457899999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1218 FQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1218 ~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
|++||.|||++|++||++||||++.|||+||++||+|+.||+++++++++.+
T Consensus 633 l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~ 684 (720)
T 2zj8_A 633 LRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKI 684 (720)
T ss_dssp HHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTS
T ss_pred HHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-76 Score=793.45 Aligned_cols=668 Identities=29% Similarity=0.432 Sum_probs=527.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 505 LSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 505 L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
+..|||+.+.+.+++.||.+|+|+|.++++. +.+++|++++||||||||++|++++++.+. .++++||++|+++||.
T Consensus 6 l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~--i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 6 LAESISSYAVGILKEEGIEELFPPQAEAVEK--VFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHHHHHCC---CCCCCCHHHHHH--HTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHH
T ss_pred hhhccCHHHHHHHHhCCCCCCCHHHHHHHHH--HhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHH
Confidence 3446889999999999999999999999987 889999999999999999999999998876 4789999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
|++++++ .+..+|++|..++|+..... ...+++|+|||||++..++++ ...+++++++|||||+|++++++||..+
T Consensus 83 q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (702)
T 2p6r_A 83 EKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATL 159 (702)
T ss_dssp HHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHH
T ss_pred HHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHH
Confidence 9999995 45667999999999764322 234789999999999998876 4456899999999999999998999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEecccc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~ 743 (2191)
+.++.++++. .+++|+|+||||++|.+++++|+++..+...+||+|+..++......
T Consensus 160 ~~ll~~l~~~-----------------------~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~ 216 (702)
T 2p6r_A 160 EILVTKMRRM-----------------------NKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTL 216 (702)
T ss_dssp HHHHHHHHHH-----------------------CTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEE
T ss_pred HHHHHHHHhc-----------------------CcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCee
Confidence 9999999865 25689999999999999999999999999999999998876543322
Q ss_pred ccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHH
Q 000107 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSA 823 (2191)
Q Consensus 744 ~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~ 823 (2191)
....... ... .......++.+.+..++++||||++++.|+.++..|.+.+...... .+ .
T Consensus 217 ~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~-----~~------~ 275 (702)
T 2p6r_A 217 ELFDGAF-------STS---RRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVEN-----EG------L 275 (702)
T ss_dssp EEEETTE-------EEE---EECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCC-----SS------H
T ss_pred eccCcch-------hhh---hhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCh-----HH------H
Confidence 1111000 000 0001344555566678999999999999999999998765431100 00 1
Q ss_pred HHHh-hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-C-C-C
Q 000107 824 IDAL-RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-I-G-R 899 (2191)
Q Consensus 824 ~~~L-~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-~-g-~ 899 (2191)
.+.+ .......+..|.+++++||++|||+|+.++|..+++.|++|.++|||||+++++|||+|+++|||+... . + .
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 1111 112222356788888899999999999999999999999999999999999999999999999998311 0 1 3
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH-hhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHH
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM-GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~-~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di 978 (2191)
.+++..+|.||+|||||.|.|..|.||+++++.+...+. +++...+++++|.|... ..+...++..++.|.+.+.+|+
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~-~~l~~~~l~~~~~g~~~~~~~~ 434 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVE-THLRFHSLSIICDGYAKTLEEL 434 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSH-HHHHHHHHHHHHHTSCSSHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcc-hhHHHHHHHHHHcCCCCCHHHH
Confidence 567899999999999999999999999999998765543 57888888999998642 2466678889999989999999
Q ss_pred HHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhccccccc
Q 000107 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLA 1058 (2191)
Q Consensus 979 ~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~ 1058 (2191)
.+|+.+||++.+.. ....+.+..++++|.+.|+|+.+ ..+.+|++|+.++.+|++|..+++++..++... .
T Consensus 435 ~~~l~~t~~~~~~~-~~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~ 505 (702)
T 2p6r_A 435 EDFFADTFFFKQNE-ISLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRME-----L 505 (702)
T ss_dssp HHHHHTSTTHHHHC-CCCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCC-----C
T ss_pred HHHHHhhhHHHhhh-HHHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhccc-----C
Confidence 99999999864311 01235678899999999999754 346899999999999999999999999887653 3
Q ss_pred CccceeeeeccCCC----CCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhh
Q 000107 1059 SDLHLVYLSTPINV----EVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEY 1134 (2191)
Q Consensus 1059 ~dlhllylvtp~~~----~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (2191)
+++++|++++.... .+.++-..+.. ++.+. +.++ . .++ .+.
T Consensus 506 ~~~~~l~~i~~~~e~~~i~~r~~e~~~~~---------------------~~~~~--~~~~-~---------~~~-~~~- 550 (702)
T 2p6r_A 506 SDIGALHLICRTPDMERLTVRKTDSWVEE---------------------EAFRL--RKEL-S---------YYP-SDF- 550 (702)
T ss_dssp CHHHHHHHHHHSTTSCCCCCCTTTHHHHH---------------------HHHHH--GGGS-S---------CCC-CTT-
T ss_pred CHHHHHHHhhCCcccccCCCCCchHHHHH---------------------HHHhc--cccc-c---------CCc-chh-
Confidence 56688888765421 11111011110 01110 0000 0 000 000
Q ss_pred hhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000107 1135 RLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL 1214 (2191)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~l 1214 (2191)
+......+.+||++++|++|++|+++.+|+++|++.+|++|+++++|.|+++++..||..+||. .
T Consensus 551 -----------~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~ 615 (702)
T 2p6r_A 551 -----------SVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT----S 615 (702)
T ss_dssp -----------STTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----S
T ss_pred -----------hhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH----H
Confidence 0011234578999999999999999999999999999999999999999999999999999996 7
Q ss_pred HHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1215 l~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+..|.+||.|||++|++||++||||++.|||+||++||+|+.||++++ ++|.++|. .+++++|++
T Consensus 616 l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~--------------~~~~~~i~~ 680 (702)
T 2p6r_A 616 VSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG--------------RGIAERVVE 680 (702)
T ss_dssp STTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC--------------HHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC--------------hhHHHHHHH
Confidence 789999999999999999999999999999999999999999999999 99998862 467888999
Q ss_pred HHH
Q 000107 1295 GAR 1297 (2191)
Q Consensus 1295 ~A~ 1297 (2191)
.|+
T Consensus 681 ~~~ 683 (702)
T 2p6r_A 681 GIS 683 (702)
T ss_dssp HHH
T ss_pred hcC
Confidence 888
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-70 Score=780.03 Aligned_cols=655 Identities=23% Similarity=0.307 Sum_probs=505.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh----------cCCEEEEEch
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS----------TGKMALLVLP 578 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~----------~g~kaL~I~P 578 (2191)
||+.....| .||++|+++|.+|++. ++.+++|+||+||||||||++|+++|++.+.+ ++.++|||+|
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~-al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRA-ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 142 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHH-HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHH-HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECC
Confidence 665544444 3899999999999985 35679999999999999999999999999874 3679999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
++|||.|+++.|++.+..+|++|..++|+..... ...+++|+|||||+|+.+++++....+++++++|||||+|+++|
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d- 221 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD- 221 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-
Confidence 9999999999999999999999999999875422 23468999999999999988765555789999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc------ccccccccc
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPV 731 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~------l~~~~~Rpv 731 (2191)
.||+.+|.+++++++.... .+.++|+|+||||++|++++++||++. .|...+|||
T Consensus 222 ~RG~~lE~~l~rl~~~~~~-------------------~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPv 282 (1724)
T 4f92_B 222 DRGPVLEALVARAIRNIEM-------------------TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPV 282 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHH-------------------HTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSS
T ss_pred ccHHHHHHHHHHHHHHHHh-------------------CCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccC
Confidence 5999999999998765321 236789999999999999999999874 678999999
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
||++++...... .. .... ..+...+.+.+ ..++++||||+||+.|+.+|..|.+.+.....
T Consensus 283 pL~~~~~~~~~~--~~---~~~~-----------~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~ 346 (1724)
T 4f92_B 283 PLEQTYVGITEK--KA---IKRF-----------QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDT 346 (1724)
T ss_dssp CEEEECCEECCC--CH---HHHH-----------HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTS
T ss_pred ccEEEEeccCCc--ch---hhhh-----------HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 998765321110 00 0000 01112222222 23579999999999999999999887644321
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
........ ....+.+. .......+..|.+++.+||++|||||+.++|..||+.|++|.++|||||+||++|||+|++
T Consensus 347 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~ 423 (1724)
T 4f92_B 347 LGLFLREG-SASTEVLR--TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH 423 (1724)
T ss_dssp TTCCSSCC-TTCSSHHH--HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBS
T ss_pred hhhhcccc-hhHHHHHH--hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCc
Confidence 11000000 00001111 1122345788999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCC------CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHH
Q 000107 889 RVIFRQPRI------GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHA 962 (2191)
Q Consensus 889 ~VVI~~p~~------g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~ 962 (2191)
+|||..... +..+++..+|+||+|||||+|+|..|++|+++++++...+..++.++. |++|+|.. .+...
T Consensus 424 ~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~-pieS~l~~---~l~d~ 499 (1724)
T 4f92_B 424 TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQL-PIESQMVS---KLPDM 499 (1724)
T ss_dssp EEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCS-CCCCCTTT---THHHH
T ss_pred eEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCC-cchhhccc---cHHHH
Confidence 999974321 234689999999999999999999999999999998888888998876 69999875 34566
Q ss_pred HHHHHhcccccCHHHHHHHHHhhhcCCC---------Ccc----------hhHHHHHHHHHHHHHHcccceeccCCCccC
Q 000107 963 ILEVVAGGIVQTAEDIHRYVRCTLLNST---------KPF----------QDVVKSAQDSLRWLCHRKFLEWNEDTKLYS 1023 (2191)
Q Consensus 963 iLeiia~gi~~t~~di~~~l~~tll~~~---------~~~----------~~~~~~~~~al~~L~~~~~i~~~~~~~~~~ 1023 (2191)
++..|+.|.+.+.+++.+|+.+||++.. ... ....+.+..++++|.+.+||+.+++++.+.
T Consensus 500 L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~ 579 (1724)
T 4f92_B 500 LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ 579 (1724)
T ss_dssp HHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEE
T ss_pred HHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccc
Confidence 7778888999999999999999987521 000 012244678999999999999888777899
Q ss_pred CCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCH
Q 000107 1024 TTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSE 1103 (2191)
Q Consensus 1024 ~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e 1103 (2191)
+|++|++++..||++.++..+...++.. .++.++|++++-. .++..+..+-++.
T Consensus 580 ~T~lGr~~s~~yi~~~t~~~~~~~l~~~------~~~~~ll~~is~s-----~ef~~i~~R~~E~--------------- 633 (1724)
T 4f92_B 580 VTELGRIASHYYITNDTVQTYNQLLKPT------LSEIELFRVFSLS-----SEFKNITVREEEK--------------- 633 (1724)
T ss_dssp ECHHHHHHHHTTCCHHHHHHHHHHCCTT------CCHHHHHHHHHTC-----GGGTTCCCCGGGH---------------
T ss_pred cchHHHHHHHhcCCHHHHHHHHhhcCCC------CCHHHHHHHHhCC-----hhhccCCcCHHHH---------------
Confidence 9999999999999999988877766432 2455555555432 2211111111111
Q ss_pred HHHHHHhcCCCccccccccccccCccchhhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcc
Q 000107 1104 PYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARG 1183 (2191)
Q Consensus 1104 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG 1183 (2191)
..+.++....++...+ .. ++ . ..++.++|++||++.++...+- .+
T Consensus 634 ~~l~~l~~~~~~~~~~----------------------~~--~~---~---~~Kv~~Llq~~i~~~~~~~~~l-----~~ 678 (1724)
T 4f92_B 634 LELQKLLERVPIPVKE----------------------SI--EE---P---SAKINVLLQAFISQLKLEGFAL-----MA 678 (1724)
T ss_dssp HHHHHHHHHSSSCCCS----------------------CC--SS---H---HHHHHHHHHHHHTTCCCCCHHH-----HH
T ss_pred HHHHHHHhcCCCCcCC----------------------CC--CC---h---HHHHHHHHHHHHcCCCcccccH-----HH
Confidence 1122222222221100 00 00 1 1238899999999999877665 38
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
|...+.++|.|++.++..+|...||..+...+-.+.+++.+|++++..||.++|+|++.++|+|+++|+ |+++|..+++
T Consensus 679 D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~ 757 (1724)
T 4f92_B 679 DMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNH 757 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCC-CHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHh
Q 000107 1264 SEIVKALF 1271 (2191)
Q Consensus 1264 ~~l~~~l~ 1271 (2191)
.+|..++.
T Consensus 758 ~~l~~~~~ 765 (1724)
T 4f92_B 758 NEIGELIR 765 (1724)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999984
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=476.38 Aligned_cols=402 Identities=26% Similarity=0.426 Sum_probs=298.2
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..+|. |+|+|.++++. +..|++++++||||+|||++|+++++..+ ..++++||++|+++|+.|++++|..++.
T Consensus 82 ~~~f~-L~~~Q~eai~~--l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISC--IDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHH--HHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCCC-CCHHHHHHHHH--HHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 35674 99999999987 88999999999999999999999988766 4688999999999999999999998775
Q ss_pred CeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 599 RHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
.|+.++|+.. ...+.+|+|+|||++..++.+ ....+.++++|||||+|++.+.+||..++.++..+
T Consensus 155 -~vglltGd~~---~~~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-------- 220 (1010)
T 2xgj_A 155 -DVGLMTGDIT---INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-------- 220 (1010)
T ss_dssp -CEEEECSSCE---ECTTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS--------
T ss_pred -CEEEEeCCCc---cCCCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhcccchhHHHHHHHHhc--------
Confidence 5677777653 234678999999999888766 45678999999999999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhh------ccccccccccccceEEEEecc--ccc---cch
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ------AALYETNFRPVPLEEYIKVGN--AIY---SKK 747 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~------a~l~~~~~RpvpL~e~i~~~~--~~~---~~~ 747 (2191)
+..+|+|+||||++|..+++.|++ ..++...+||+|++.++.... ..+ ...
T Consensus 221 ------------------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 282 (1010)
T 2xgj_A 221 ------------------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK 282 (1010)
T ss_dssp ------------------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTT
T ss_pred ------------------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccc
Confidence 356899999999999999999996 335677899999988876422 111 000
Q ss_pred ----hhHHHHHHHhhcc-------------------CC-----CChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHHH
Q 000107 748 ----MDVVRTILTAANL-------------------GG-----KDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 748 ----~~~~r~l~~~~~~-------------------~~-----~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~~ 798 (2191)
............. .. .+...+..++..+...+ .++||||+|++.|+.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~ 362 (1010)
T 2xgj_A 283 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 362 (1010)
T ss_dssp CCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHH
Confidence 0000000000000 00 00334555665555444 5999999999999999988
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCC------ChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceE
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGL------DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gl------d~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikV 872 (2191)
|... +... ..+...+....+.......+. ...+..++..||++|||+|++.+|..+++.|++|.++|
T Consensus 363 L~~~----~~~~---~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikV 435 (1010)
T 2xgj_A 363 MSKL----DFNS---DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 435 (1010)
T ss_dssp TTTS----CCCC---HHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHhC----CCCC---hHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcE
Confidence 7431 1110 001111111111100000001 12345667789999999999999999999999999999
Q ss_pred EEecccccccCCCCCceEEee----cCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHHHhhhccCCCC
Q 000107 873 LTATSTLAAGVNLPARRVIFR----QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPP 947 (2191)
Q Consensus 873 LVATstLa~GVNLPav~VVI~----~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~~~ll~~~l~~ 947 (2191)
||||+++++|||+|+++|||+ ++..+..+++..+|.||+|||||.|.|..|.||+++++. +...+.+++.....+
T Consensus 436 LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~ 515 (1010)
T 2xgj_A 436 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADR 515 (1010)
T ss_dssp EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCC
T ss_pred EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcc
Confidence 999999999999999999998 443334477999999999999999999899999999875 566777888888889
Q ss_pred cccccccccchhhHHHHHHHhcc
Q 000107 948 LHSCLSEDKNGMTHAILEVVAGG 970 (2191)
Q Consensus 948 l~S~L~~~~~~l~~~iLeiia~g 970 (2191)
+.|.+... ...+|.++...
T Consensus 516 l~s~f~~~----~~~ilnll~~~ 534 (1010)
T 2xgj_A 516 LDSAFHLG----YNMILNLMRVE 534 (1010)
T ss_dssp CCCCCCCC----HHHHHHHHHSS
T ss_pred cccccCCc----HHHHHHHHHhc
Confidence 98887643 33456666543
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=476.22 Aligned_cols=420 Identities=25% Similarity=0.416 Sum_probs=303.2
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
...++..|+|+|.++++. ++.|+++|++||||||||++|+++++..+ ..++++||++|+++|+.|+++.|.+++.
T Consensus 178 ~~~~~f~ltp~Q~~AI~~--i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISC--IDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHH--HTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred HHhCCCCCCHHHHHHHHH--HHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 344556899999999987 89999999999999999999999999876 4688999999999999999999998875
Q ss_pred CCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.|+.++|+.. ...+++|+|+|||++..++.+ ....+.++++|||||+|.+.+.+||..++.++..+
T Consensus 253 --~VglltGd~~---~~~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l------- 318 (1108)
T 3l9o_A 253 --DVGLMTGDIT---INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL------- 318 (1108)
T ss_dssp --SEEEECSSCB---CCCSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-------
T ss_pred --CccEEeCccc---cCCCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHHhc-------
Confidence 4666777653 445689999999999888765 34457899999999999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc------cccccccccccceEEEEeccc--ccc---c
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA------ALYETNFRPVPLEEYIKVGNA--IYS---K 746 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a------~l~~~~~RpvpL~e~i~~~~~--~~~---~ 746 (2191)
+..+|+|+||||++|..+++.|++. .++...+||+|++.++..... .+. .
T Consensus 319 -------------------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 319 -------------------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp -------------------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEET
T ss_pred -------------------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeecc
Confidence 3578999999999999999999874 356778999999887753211 110 0
Q ss_pred h----hhHHHHHHHhhc------------------------cCCCChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHH
Q 000107 747 K----MDVVRTILTAAN------------------------LGGKDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTAR 797 (2191)
Q Consensus 747 ~----~~~~r~l~~~~~------------------------~~~~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~ 797 (2191)
. ............ ........+..++..+...+ .++||||++++.|+.++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHH
Confidence 0 000000000000 00001445555666555544 699999999999999998
Q ss_pred HHHHHHhhcccccCCCCchhhh-hHHHHHHhhcCCCCC--ChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEE
Q 000107 798 HVSKFLKKFSINVHSSDSEFID-ITSAIDALRRCPAGL--DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874 (2191)
Q Consensus 798 ~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~gl--d~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLV 874 (2191)
.|........ ........ +...+..+......+ ...+..++..||++|||+|++.+|..|++.|++|.++|||
T Consensus 460 ~L~~~~~~~~----~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLV 535 (1108)
T 3l9o_A 460 KMSKLDFNSD----DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535 (1108)
T ss_dssp HTCSHHHHCC--------CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHhccCCCH----HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 8854321110 00000000 000000010000000 1235567788999999999999999999999999999999
Q ss_pred ecccccccCCCCCceEEeecCCC--C--CcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHHHhhhccCCCCcc
Q 000107 875 ATSTLAAGVNLPARRVIFRQPRI--G--RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPPLH 949 (2191)
Q Consensus 875 ATstLa~GVNLPav~VVI~~p~~--g--~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~~~ll~~~l~~l~ 949 (2191)
||+++++|||+|++++||++..+ + ..+++..+|+||+|||||.|.|..|.||+++++. +...+..++.....++.
T Consensus 536 AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLD 615 (1108)
T ss_dssp EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_pred ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccc
Confidence 99999999999999999976432 2 2367889999999999999999999999999875 45667788999888999
Q ss_pred cccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhc
Q 000107 950 SCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987 (2191)
Q Consensus 950 S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll 987 (2191)
|.+.... ..+|.++..+-. + ...++..+|.
T Consensus 616 S~f~~~y----~~ilnll~~~~~-~---~~~~l~~sf~ 645 (1108)
T 3l9o_A 616 SAFHLGY----NMILNLMRVEGI-S---PEFMLEHSFF 645 (1108)
T ss_dssp CCCCCCH----HHHHHHHHSTTC-C---HHHHHHHSSH
T ss_pred cccCCcH----HHHHHHHHhcCC-C---HHHHHHHHHH
Confidence 9987533 335566554322 2 2455555553
|
| >3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=454.75 Aligned_cols=301 Identities=18% Similarity=0.182 Sum_probs=225.5
Q ss_pred hcCCCCCCCCCCCCCCCCCcHHHHHHhhh-------cCCcHHHHHHHHHHHHHHHhHHHHHHHHhhh-------h-----
Q 000107 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRH-------EHPIVPVIKEHRTLAKLLNCTLGSICSLARI-------S----- 1862 (2191)
Q Consensus 1802 ~l~lp~~~~~~k~k~~~ST~~~vL~~L~~-------~hpi~~~ile~R~l~Kllsty~~~l~~~~~~-------~----- 1862 (2191)
.++||.+++....- +-..+|+-|.++.+ ..+.+..+|+......-...+-+-+...+-. +
T Consensus 682 ffKLPHkdG~~~nv-gsPLsK~fl~~fE~G~L~s~~~~~~A~~aLe~n~~~SYW~saRdRI~sQmVVw~~~~~~p~~~~~ 760 (1172)
T 3ikm_A 682 FFKLPHKDGNSCNV-GSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIR 760 (1172)
T ss_dssp BCCCCCTTTCSSCC-CCSSCSTHHHHHHTSSCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSSTTTTTT
T ss_pred EEeCCCCCCCCCCc-CCcccHHHHHHHHhCccccccCcHHHHHHHHHHHHhHHHHHHHHHhhhheEEeeccccccccccc
Confidence 35788665532222 23567788887753 2456777777554433333333333322110 0
Q ss_pred -----cCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEe
Q 000107 1863 -----MSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAA 1937 (2191)
Q Consensus 1863 -----~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsa 1937 (2191)
.....|+|||.++++||+|||.....||.-+.|+. ...|+ .||+||+|+ +||+||+|
T Consensus 761 ~~~~~~~~~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~------~~~Gr-----------eiR~aFva~-~G~~lvsA 822 (1172)
T 3ikm_A 761 HPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARP------DRVGS-----------ELKAMVQAP-PGYTLVGA 822 (1172)
T ss_dssp TTCCCSSSCCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSS------CSTTS-----------CCHHHHCCC-TTEEEEEE
T ss_pred cccccccccCceeeeeeeecCccccccccCCcceecCCCC------ChhhH-----------HhHheEeCC-CCCEEEEe
Confidence 01235999999999999999954444444444431 11344 799999996 99999999
Q ss_pred ccchhHHHHHHHhcCChHH--------------HHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCC
Q 000107 1938 DYSQIELRLMAHFSKDPAL--------------IGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMG 2003 (2191)
Q Consensus 1938 DySQIELRilAhlS~D~~L--------------i~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG 2003 (2191)
||||||||| ||+++|+.| +.+|++ |.|||+.||+.+ |+ .|+.||++|||+|||||
T Consensus 823 DySQIELRI-Aals~D~~l~~~~g~~A~~~~~L~~af~~-g~DIH~~TA~~v-gi--------~Rr~AK~vNFGiIYG~g 891 (1172)
T 3ikm_A 823 DVDSQELWI-AAVLGDAHFAGMHGCTAFGWMTLQGRKSR-GTDLHSKTATTV-GI--------SREHAKIFNYGRIYGAG 891 (1172)
T ss_dssp ECTTHHHHH-HHHHHHHHSSSTTCSTTTTTTCSCCTTTC-THHHHHHHHHTT-CC--------CSHHHHHHHHHHHHSCC
T ss_pred cccHHHHHH-HHHcCChhhcccccccchhhhhhhhhhcc-CCcHHHHHHHHh-CC--------ChhhchheeeehhcCCc
Confidence 999999998 889999998 445887 899999999988 76 39999999999999999
Q ss_pred h---hhhhhhcC--CCHHHHHHHHHHHHHhChhHHHHHH-----HHHHH------HHhcCeEE-----------------
Q 000107 2004 P---NTLSEQLN--CSSNEAKEKIKSFKSSFPGVASWLH-----VAVSS------CHQKGYVE----------------- 2050 (2191)
Q Consensus 2004 ~---~~La~~l~--is~~eA~~~i~~f~~~yp~v~~~~~-----~~~~~------a~~~GyV~----------------- 2050 (2191)
+ ++|++++| |+.+||+++|++||++||||+.|+. ..... +.++|||.
T Consensus 892 ~~~a~gL~~ql~~~is~~eAk~~i~~yf~~y~gv~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~ 971 (1172)
T 3ikm_A 892 QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQW 971 (1172)
T ss_dssp THHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHCSSSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHH
T ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCcChhhhhhccccchhhhhccccccccccccchhhhhhhhhhcccccccc
Confidence 6 99999988 9999999999999999999999841 22222 33567766
Q ss_pred ---cccCCeeecCcccC---------------CCh-------------hhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHH
Q 000107 2051 ---SLKGRKRFLSKIKF---------------GNN-------------KEKSKAQRQAVNSICQGSAADIIKIAMINIHS 2099 (2191)
Q Consensus 2051 ---Tl~GRrr~lp~i~s---------------~~~-------------~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~ 2099 (2191)
+++|||+++.+..| ..+ ..+....|.++|++|||||+|++|++||.++.
T Consensus 972 ~~~~~~~r~~w~GGtES~mFNkLE~iA~s~~P~TP~LGc~It~AL~~~~~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~ 1051 (1172)
T 3ikm_A 972 KKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKW 1051 (1172)
T ss_dssp HHTTTTTTHHHHHHHHHHHHSCSSSSSCCSSSCCCC---------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceecCChhHHHHHHHHHHhccCCCCCCcccchhhhhhCccccccchhhhhhchhccchHHHHHHHHHHHHHH
Confidence 78999998854333 111 14667789999999999999999999999999
Q ss_pred HHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHH
Q 000107 2100 IIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147 (2191)
Q Consensus 2100 ~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~ 2147 (2191)
.+.++ +..+||++||||||+|+|++++...+|-
T Consensus 1052 l~~~~---------------~l~ar~~l~vHDEl~~~v~~~dkyRaAL 1084 (1172)
T 3ikm_A 1052 LFEEF---------------AIDGRFCISIHDEVRYLVREEDRYRAAL 1084 (1172)
T ss_dssp HHHSS---------------SCCCBCCCCBTTEEEEEEESTTHHHHHH
T ss_pred HHHHh---------------CCCceEEEEEcceEEEeccHHHHHHHHH
Confidence 99886 6789999999999999999998875543
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=425.48 Aligned_cols=344 Identities=19% Similarity=0.267 Sum_probs=263.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-------CCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-------GKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-------g~kaL~I~P~ra 581 (2191)
|++.+.+.+++.||.+|+|+|.++++. ++.|+|++++||||||||++|.++++..+... +.++||++|+++
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~--i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPV--ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 789999999999999999999999987 89999999999999999999999999988753 458999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
||.|++++++++....++++..++|+.... .+..+++|+|+||+++..++.+ ....+.++++||+||+|++.+.
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEccHhhhhcc
Confidence 999999999999888888888888876431 1345789999999999888875 3456889999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhcccccc-c---cccc
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALYET-N---FRPV 731 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~~~-~---~Rpv 731 (2191)
++...+..++..+. ..+..|+++||||+++ ...++. |+....+.. . ....
T Consensus 219 gf~~~~~~i~~~~~------------------------~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 274 (434)
T 2db3_A 219 GFSEDMRRIMTHVT------------------------MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACS 274 (434)
T ss_dssp TTHHHHHHHHHCTT------------------------SCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCT
T ss_pred CcHHHHHHHHHhcC------------------------CCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccccc
Confidence 88888877765541 1356899999999974 233322 222111100 0 0000
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
.+...+..- ... .....+..++. ..+.++||||++++.|+.++..|.+.
T Consensus 275 ~i~~~~~~~-----~~~--------------~k~~~l~~~l~---~~~~~~lVF~~t~~~a~~l~~~L~~~--------- 323 (434)
T 2db3_A 275 DVKQTIYEV-----NKY--------------AKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEK--------- 323 (434)
T ss_dssp TEEEEEEEC-----CGG--------------GHHHHHHHHHH---HCCTTEEEECSSHHHHHHHHHHHHHT---------
T ss_pred ccceEEEEe-----CcH--------------HHHHHHHHHHH---hCCCCEEEEEeCcHHHHHHHHHHHhC---------
Confidence 111111100 000 01122333332 33456999999999999988877541
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV 891 (2191)
.+.+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 324 -------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~V 372 (434)
T 2db3_A 324 -------------------------------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHV 372 (434)
T ss_dssp -------------------------------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEE
T ss_pred -------------------------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEE
Confidence 2248899999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh-h---HHHHHhhhccCCCCc
Q 000107 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-E---VKKIMGLLNESCPPL 948 (2191)
Q Consensus 892 I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e---~~~~~~ll~~~l~~l 948 (2191)
|+++.+. +..+|+||+||+||.| ..|.|++|++++ + ...+.+++.....++
T Consensus 373 I~~d~p~----~~~~y~qriGR~gR~g--~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 373 INYDMPS----KIDDYVHRIGRTGRVG--NNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp EESSCCS----SHHHHHHHHTTSSCTT--CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred EEECCCC----CHHHHHHHhcccccCC--CCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 9987765 8899999999999999 789999999853 2 334445554433333
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=413.11 Aligned_cols=336 Identities=18% Similarity=0.257 Sum_probs=255.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC------------------
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG------------------ 570 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g------------------ 570 (2191)
|++.+.+.+...||.+|+|+|.++++. ++.++|++++||||+|||++|.++++..+...+
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPI--IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 779999999999999999999999987 899999999999999999999999998876532
Q ss_pred --CEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccc
Q 000107 571 --KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644 (2191)
Q Consensus 571 --~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~ 644 (2191)
.++||++|+++|+.|+++.+++++...++++..++|+.... .+..+++|+|+||+++..++.. ....+.+++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--GKIGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSBCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--CCcChhhCc
Confidence 57999999999999999999999888889999888876431 1345689999999999888765 344688899
Q ss_pred eEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcc
Q 000107 645 IIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAA 722 (2191)
Q Consensus 645 lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~ 722 (2191)
+|||||+|++.+.++...+..++..... ......|+++||||+++ ...+. .|++..
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~~----------------------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 235 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDTM----------------------PPKGVRHTMMFSATFPKEIQMLARDFLDEY 235 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSSC----------------------CCBTTBEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhccC----------------------CCcCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 9999999999988777777666543210 01236899999999975 33333 344332
Q ss_pred ccccccc----cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHH
Q 000107 723 LYETNFR----PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 723 l~~~~~R----pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
.+....+ +-.+...+... ... ...+.+..++.. ...++++||||++++.++.++..
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~-----~~~--------------~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~ 295 (417)
T 2i4i_A 236 IFLAVGRVGSTSENITQKVVWV-----EES--------------DKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDF 295 (417)
T ss_dssp EEEEEC----CCSSEEEEEEEC-----CGG--------------GHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCccCceEEEEEe-----ccH--------------hHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHH
Confidence 2111000 00111111100 000 011122333322 12467899999999999998887
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
|.+. ...+..+||+++.++|..+++.|++|.++|||||++
T Consensus 296 L~~~----------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 335 (417)
T 2i4i_A 296 LYHE----------------------------------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 335 (417)
T ss_dssp HHHT----------------------------------------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH
T ss_pred HHHC----------------------------------------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh
Confidence 7541 234899999999999999999999999999999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
+++|||+|++++||++..+. +..+|+||+|||||.| ..|.|++++++.+...
T Consensus 336 ~~~Gidip~v~~Vi~~~~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 336 AARGLDISNVKHVINFDLPS----DIEEYVHRIGRTGRVG--NLGLATSFFNERNINI 387 (417)
T ss_dssp HHTTSCCCCEEEEEESSCCS----SHHHHHHHHTTBCC----CCEEEEEEECGGGGGG
T ss_pred hhcCCCcccCCEEEEEcCCC----CHHHHHHhcCccccCC--CCceEEEEEccccHHH
Confidence 99999999999999876654 8899999999999999 6899999999876443
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=420.88 Aligned_cols=350 Identities=17% Similarity=0.224 Sum_probs=266.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccc--cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC------CEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVL--QRRNLVYCASTSAGKSFVAEILMLRRLISTG------KMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il--~gknlIi~APTGSGKTlvael~iL~~ll~~g------~kaL~I~P~r 580 (2191)
|++.+.+.+.+.||.+|+|+|.++|+. ++ .++++|++||||+|||++|++++++.+...+ .++|||+|++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKP--ILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHH--HHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 889999999999999999999999986 77 6899999999999999999999999887643 4899999999
Q ss_pred HHHHHHHHHHHHHhhc----cCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccc
Q 000107 581 SICAEKAEHLEVLLEP----LGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~----lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEa 651 (2191)
+||.|+++.++.++.. .+..+..++|+..... ...+++|+||||+++..++.+. ....++.+++|||||+
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCH
Confidence 9999999999987542 2355666777653211 1235799999999998888763 2335788999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc---c-c-
Q 000107 652 HMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL---Y-E- 725 (2191)
Q Consensus 652 H~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l---~-~- 725 (2191)
|++.+++++..++.++..+...... ...++|+|+||||+++ ...+..++.... + .
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~-------------------~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~ 296 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSK-------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 296 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSS-------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred HHHhccchHHHHHHHHHhhhhcccc-------------------CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEec
Confidence 9999999999999999998765321 2357899999999987 355554443211 0 0
Q ss_pred -ccccccc---ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHH
Q 000107 726 -TNFRPVP---LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 726 -~~~Rpvp---L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
...++.. +...+..... ..... ......+...+ ..++++||||+|++.|+.++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~ 358 (563)
T 3i5x_A 297 VDKNEPEAHERIDQSVVISEK----FANSI--------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI 358 (563)
T ss_dssp SCSSSCSSCTTEEEEEEEESS----TTHHH--------------HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHH
T ss_pred cCCCCccccccCceEEEECch----hHhhH--------------HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHH
Confidence 0001110 1111110000 00000 01111111111 3467999999999999999998
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
|.+.+.. ...+..|||+|++.+|..+++.|++|.++|||||++
T Consensus 359 L~~~~~~-------------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 401 (563)
T 3i5x_A 359 LKNEFKK-------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401 (563)
T ss_dssp HHHHHTT-------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHhccC-------------------------------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch
Confidence 8764321 234899999999999999999999999999999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
+++|||+|++++||+++.+. +..+|+||+|||||.| ..|.|++++.+.+...+..+.
T Consensus 402 ~~~GiDip~v~~VI~~~~p~----s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 402 GARGMDFPNVHEVLQIGVPS----ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp GTSSCCCTTCCEEEEESCCS----STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred hhcCCCcccCCEEEEECCCC----chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 99999999999999877665 8899999999999999 789999999998877666554
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=443.59 Aligned_cols=394 Identities=26% Similarity=0.367 Sum_probs=289.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.+| +|+++|.++++. ++.|+++++++|||||||++|++++...+ ..++++||++|+++|+.|+++++.+++. ++
T Consensus 36 ~~f-~l~~~Q~~aI~~--il~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYH--LEQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHH--HHTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHH--HHcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 456 589999999987 89999999999999999999999887654 4688999999999999999999988654 67
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.+..++|+.. .....+|+|+|||++.+++.+ ....+.++++|||||+|++.+++||..++.++..+
T Consensus 110 ~v~~l~G~~~---~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l--------- 175 (997)
T 4a4z_A 110 NIGLITGDVQ---INPDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML--------- 175 (997)
T ss_dssp CEEEECSSCE---ECTTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS---------
T ss_pred eEEEEeCCCc---cCCCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHhc---------
Confidence 7888888653 335689999999999887765 44567899999999999999999999999888665
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc------ccccccccccceEEEEeccccccch------
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKK------ 747 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~------l~~~~~RpvpL~e~i~~~~~~~~~~------ 747 (2191)
++.+|+|+||||++|..++++|++.. ++...+||+|+..++......+...
T Consensus 176 -----------------~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 176 -----------------PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp -----------------CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred -----------------ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 35789999999999999999999842 5678999999998876543322110
Q ss_pred ----hhHHHHHHH-h------------------------------------------------------------hccCC
Q 000107 748 ----MDVVRTILT-A------------------------------------------------------------ANLGG 762 (2191)
Q Consensus 748 ----~~~~r~l~~-~------------------------------------------------------------~~~~~ 762 (2191)
......... . .....
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000000 0 00000
Q ss_pred CChhHHHHHHHHHHhc-CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCC----CC--C
Q 000107 763 KDPDHIVELCDEVVQE-GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA----GL--D 835 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~~~-g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----gl--d 835 (2191)
.....+..++..+... ..++||||+|++.|+.++..|.. .+... ..+...+...+++....-. .+ .
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~----~~~~~---~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 391 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEG----INFCN---NKEKSQIHMFIEKSITRLKKEDRDLPQI 391 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTT----CCCCC---HHHHHHHHHHHHHHHTTSCHHHHTCHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhc----CCCCC---HHHHHHHHHHHHHHHHhcchhhhcchhH
Confidence 1222334444444333 37999999999999999888743 11110 0111111111111100000 00 1
Q ss_pred hhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC----CCCcccCcccccccc
Q 000107 836 PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR----IGRDFIDGTRYRQMA 911 (2191)
Q Consensus 836 ~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~----~g~~~is~~~y~Qmi 911 (2191)
..+..++.+||++|||+|++.+|..|++.|+.|.++|||||+++++|||+|++.|||.... .+..+++..+|.||+
T Consensus 392 ~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 392 LKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHh
Confidence 2356778899999999999999999999999999999999999999999999888874321 122356889999999
Q ss_pred cccCCCCCCCceEEEEEeC--hhhHHHHHhhhccCCCCcccccccccc
Q 000107 912 GRAGRTGIDTKGESMLICK--PEEVKKIMGLLNESCPPLHSCLSEDKN 957 (2191)
Q Consensus 912 GRAGR~G~d~~Ge~ill~~--~~e~~~~~~ll~~~l~~l~S~L~~~~~ 957 (2191)
|||||.|.|..|.||+++. ..+...+..++....+++.|.+....+
T Consensus 472 GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~yn 519 (997)
T 4a4z_A 472 GRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYN 519 (997)
T ss_dssp GGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHH
T ss_pred cccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchH
Confidence 9999999999999999994 345666777888888888888765444
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=394.33 Aligned_cols=336 Identities=20% Similarity=0.220 Sum_probs=252.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .++++||++|+++|+.
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPL--LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELAR 89 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHH
Confidence 678999999999999999999999987 7776 999999999999999999999987654 4668999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~~l 663 (2191)
|+++.++++....++.+...+++........+.+|+|+||+++..++.+ ....+.++++|||||+|.+.+ .++...+
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 167 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQGLGDQC 167 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccccHHHH
Confidence 9999999988878888888887765544455789999999999887765 444688999999999999876 3333333
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc--cc---cccccccceEEE
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL--YE---TNFRPVPLEEYI 737 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l--~~---~~~RpvpL~e~i 737 (2191)
..++.. .+...|+|+||||+++ ...+..++.... +. .......+...+
T Consensus 168 ~~~~~~--------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 3pey_A 168 IRVKRF--------------------------LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLY 221 (395)
T ss_dssp HHHHHT--------------------------SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEE
T ss_pred HHHHHh--------------------------CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEE
Confidence 322211 1356899999999985 344444432211 11 111111111111
Q ss_pred EeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 738 ~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
... . ........+..... .++++||||++++.|+.++..|...
T Consensus 222 ~~~----~------------------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------- 266 (395)
T 3pey_A 222 MDC----K------------------NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE------------- 266 (395)
T ss_dssp EEC----S------------------SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT-------------
T ss_pred EEc----C------------------chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc-------------
Confidence 100 0 00011112222222 3579999999999999888877541
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
...+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++.
T Consensus 267 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 267 ---------------------------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp ---------------------------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred ---------------------------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 12388899999999999999999999999999999999999999999999765
Q ss_pred CC--CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 896 RI--GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 896 ~~--g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
.+ ....++..+|.||+|||||.| ..|.|++++.+.+...+.
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHHHH
T ss_pred CCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEechHHHHHH
Confidence 43 345568899999999999999 689999999875544333
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=396.44 Aligned_cols=342 Identities=20% Similarity=0.281 Sum_probs=258.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987654 456899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.++.++...++.+..++|+.... ....+++|+|+||+++..++.+ ....+.++++|||||+|.+.+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~~~~ 183 (400)
T 1s2m_A 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRDFKTI 183 (400)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhchHHH
Confidence 9999999888899998888875421 1345679999999998887765 345688899999999999887655554
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc-------cccccccceE
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE-------TNFRPVPLEE 735 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~-------~~~RpvpL~e 735 (2191)
++.++..+ +...|+++||||++. .+..++...+.. .......+..
T Consensus 184 ~~~i~~~~--------------------------~~~~~~i~lSAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (400)
T 1s2m_A 184 IEQILSFL--------------------------PPTHQSLLFSATFPL--TVKEFMVKHLHKPYEINLMEELTLKGITQ 235 (400)
T ss_dssp HHHHHTTS--------------------------CSSCEEEEEESCCCH--HHHHHHHHHCSSCEEESCCSSCBCTTEEE
T ss_pred HHHHHHhC--------------------------CcCceEEEEEecCCH--HHHHHHHHHcCCCeEEEeccccccCCcee
Confidence 44443222 356899999999873 333333322111 0111111112
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... ... ....+..++.. ..++++||||++++.++.++..|...
T Consensus 236 ~~~~~~-----~~~--------------k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~------------- 281 (400)
T 1s2m_A 236 YYAFVE-----ERQ--------------KLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDL------------- 281 (400)
T ss_dssp EEEECC-----GGG--------------HHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHH-------------
T ss_pred EEEEec-----hhh--------------HHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhc-------------
Confidence 211100 000 01122223222 24579999999999999988877542
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
+.++.++||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||++.
T Consensus 282 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 282 ---------------------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp ---------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESS
T ss_pred ---------------------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHh---hhccCCCCcc
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG---LLNESCPPLH 949 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~---ll~~~l~~l~ 949 (2191)
.+. +..+|.||+|||||.| ..|.|++++++.+...+.+ .+...++++.
T Consensus 335 ~p~----s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 335 FPK----TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp CCS----SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred CCC----CHHHHHHhcchhcCCC--CCceEEEEeccchHHHHHHHHHHhCCCccccc
Confidence 654 7889999999999999 6899999999977555443 4444444443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=414.15 Aligned_cols=351 Identities=17% Similarity=0.223 Sum_probs=264.8
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccc--cCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEchh
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVL--QRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVLPY 579 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il--~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~P~ 579 (2191)
.|++.+.+.+.+.||..|+|+|.++++. ++ .++++|++||||+|||++|.+++++.+... +.++|||+|+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKP--ILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHH--HHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH--HHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 3889999999999999999999999986 77 689999999999999999999999988764 3589999999
Q ss_pred HHHHHHHHHHHHHHhhc----cCCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcc
Q 000107 580 VSICAEKAEHLEVLLEP----LGRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~----lg~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDE 650 (2191)
++||.|+++.+..++.. ....+..++|+..... + ..+++|+||||+++..++.+. ....+..+++|||||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEC
Confidence 99999999999987642 2455666777643211 1 225799999999998888763 234678899999999
Q ss_pred cccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc---c-c
Q 000107 651 LHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL---Y-E 725 (2191)
Q Consensus 651 aH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l---~-~ 725 (2191)
+|++.++++...++.++..+...... ....+|+|+||||+++ ...+..++.... + .
T Consensus 184 ah~l~~~gf~~~~~~i~~~l~~~~~~-------------------~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 184 ADRLLEIGFRDDLETISGILNEKNSK-------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSS-------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred hHHhhcCCCHHHHHHHHHHhhhhhcc-------------------cccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 99999999999999999988765321 2347899999999986 344444432210 0 0
Q ss_pred --cccccc---cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHH
Q 000107 726 --TNFRPV---PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTAR 797 (2191)
Q Consensus 726 --~~~Rpv---pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~ 797 (2191)
...++. .+...+..... ..... ..+...+...+ ..+.++||||+|++.|+.++.
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~ 306 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEK----FANSI--------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCS 306 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESS----TTHHH--------------HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHH
T ss_pred ecCccccccccccceEEEEecc----hhhhH--------------HHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHH
Confidence 000110 01111110000 00000 01111111112 346799999999999999998
Q ss_pred HHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecc
Q 000107 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 798 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATs 877 (2191)
.|.+.+.. ...+..+||+|++.+|..+++.|++|.++|||||+
T Consensus 307 ~L~~~~~~-------------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 307 ILKNEFKK-------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp HHHHHHTT-------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred HHHHhhcC-------------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 88764321 12488999999999999999999999999999999
Q ss_pred cccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 878 TLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 878 tLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
++++|||+|++++||++..+. +...|+||+|||||.| ..|.|++++.+.+...+..+.
T Consensus 350 ~~~~GiDip~v~~VI~~~~p~----s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGVPS----ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp GGTSSCCCTTCCEEEEESCCS----STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEcCCCC----CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHHH
Confidence 999999999999999877665 8899999999999999 789999999998876665554
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=393.58 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=244.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.+.||..|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .++++||++|+++|+.
T Consensus 32 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 32 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 789999999999999999999999987 7776 999999999999999999999987764 3448999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~ 661 (2191)
|+++.++++.... +..+....|+.... ......+|+|+||+++..++.+. ....+.++++|||||+|++.+ .++..
T Consensus 110 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 188 (412)
T 3fht_A 110 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 188 (412)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHHSTTTTHH
T ss_pred HHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHhhcCCcHH
Confidence 9999999887653 56777766655332 22345799999999987776431 233568899999999999876 33443
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcccc-ccc---cccccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAALY-ETN---FRPVPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~l~-~~~---~RpvpL~e 735 (2191)
.+..++..+ +.+.|+|+||||+++ ...+. .++....+ ... ...-.+..
T Consensus 189 ~~~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 189 QSIRIQRML--------------------------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp HHHHHHHTS--------------------------CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred HHHHHHhhC--------------------------CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 333332221 356899999999985 22333 22222111 000 01111111
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... .... ....+..++.. ..++++||||++++.|+.++..|.+.
T Consensus 243 ~~~~~~----~~~~--------------~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~------------- 289 (412)
T 3fht_A 243 YYVLCS----SRDE--------------KFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKE------------- 289 (412)
T ss_dssp EEEECS----SHHH--------------HHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHT-------------
T ss_pred EEEEcC----ChHH--------------HHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhC-------------
Confidence 111000 0000 01122233322 24579999999999999998887541
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
..++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++
T Consensus 290 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 290 ---------------------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp ---------------------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred ---------------------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCC--cccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 896 RIGR--DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 896 ~~g~--~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.+.. .+.+..+|.||+|||||.| ..|.|++++++.+
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred CCCCCCCCcchheeecccCcccCCC--CCceEEEEEcChh
Confidence 6532 1257789999999999999 7899999998754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=424.67 Aligned_cols=431 Identities=19% Similarity=0.205 Sum_probs=304.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
+++.+.+.+..+| ..|.+.|.++|.. .+..+++++++||||||||++..+.++...... +.+++|++|+++||.|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~ 156 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSV 156 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHH
Confidence 6788999999888 6888999999975 456788999999999999996555444433333 67899999999999999
Q ss_pred HHHHHHHhh-ccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHH
Q 000107 587 AEHLEVLLE-PLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 587 ~~~l~~l~~-~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
++++...+. ..+..++.. .........+++|+|+||+++...+. ....+.++++|||||+|. |+...+.
T Consensus 157 ~~~l~~~~~~~v~~~vG~~--i~~~~~~~~~~~I~v~T~G~l~r~l~---~~~~l~~~~~lIlDEah~-----R~ld~d~ 226 (773)
T 2xau_A 157 AQRVAEEMDVKLGEEVGYS--IRFENKTSNKTILKYMTDGMLLREAM---EDHDLSRYSCIILDEAHE-----RTLATDI 226 (773)
T ss_dssp HHHHHHHTTCCBTTTEEEE--ETTEEECCTTCSEEEEEHHHHHHHHH---HSTTCTTEEEEEECSGGG-----CCHHHHH
T ss_pred HHHHHHHhCCchhheecce--eccccccCCCCCEEEECHHHHHHHHh---hCccccCCCEEEecCccc-----cccchHH
Confidence 987765442 233333311 11112234568999999999765543 456799999999999996 3333333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc-cccccccccccceEEEEeccccc
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIY 744 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a-~l~~~~~RpvpL~e~i~~~~~~~ 744 (2191)
++..++.+... .++.|+|+||||+ +.+.+++|++. .++....+..|++.++.....
T Consensus 227 ~~~~l~~l~~~--------------------~~~~~iIl~SAT~-~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~-- 283 (773)
T 2xau_A 227 LMGLLKQVVKR--------------------RPDLKIIIMSATL-DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ-- 283 (773)
T ss_dssp HHHHHHHHHHH--------------------CTTCEEEEEESCS-CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC--
T ss_pred HHHHHHHHHHh--------------------CCCceEEEEeccc-cHHHHHHHhcCCCcccccCcccceEEEEecCCc--
Confidence 34444333221 2468999999998 67899999974 445556667776654331110
Q ss_pred cchhhHHHHHHHhhccCCCChhHHHHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 745 SKKMDVVRTILTAANLGGKDPDHIVELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 745 ~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
... .+.....+.... ..++++||||++++.|+.++..|.+.+....
T Consensus 284 ---~~~--------------~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~--------------- 331 (773)
T 2xau_A 284 ---RDY--------------LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLV--------------- 331 (773)
T ss_dssp ---SCH--------------HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHH---------------
T ss_pred ---hhH--------------HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhc---------------
Confidence 000 111222222222 2468999999999999999999876432110
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhh-----cCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR-----KGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr-----~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
.. .......|.+|||+|++++|..+++.|+ +|.++|||||+++++|||+|++++||+++..
T Consensus 332 --~~------------~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 332 --RE------------EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp --HH------------HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred --cc------------ccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 00 0011234999999999999999999999 9999999999999999999999999996541
Q ss_pred ---------CC-----cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHH
Q 000107 898 ---------GR-----DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAI 963 (2191)
Q Consensus 898 ---------g~-----~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~i 963 (2191)
|. .+++..+|.||+|||||.+ .|.||+++++.++.. .+.....|.+.. ..+...+
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~---~G~~~~l~~~~~~~~--~l~~~~~pEi~r------~~L~~~~ 466 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEEAFQK--ELIEQSYPEILR------SNLSSTV 466 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS---SEEEEESSCHHHHHH--TSCSSCCCGGGG------SCCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCCC---CCEEEEEecHHHhcc--cccccCCCcccc------CcHHHHH
Confidence 21 2678999999999999995 899999998876532 233444444422 2455678
Q ss_pred HHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHH
Q 000107 964 LEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLI 1043 (2191)
Q Consensus 964 Leiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~ 1043 (2191)
|.+.+.|+- ++ ..+.|+.++. .+.+..|++.|...|+|+. + -.+|++|+.++.+|++|..|++
T Consensus 467 L~l~~~gi~----~~---~~f~~~~~p~-----~~~i~~a~~~L~~lgald~--~---~~lT~lG~~~a~~pl~p~~~~~ 529 (773)
T 2xau_A 467 LELKKLGID----DL---VHFDFMDPPA-----PETMMRALEELNYLACLDD--E---GNLTPLGRLASQFPLDPMLAVM 529 (773)
T ss_dssp HHHHHTTCC----CG---GGCCCSSCCC-----HHHHHHHHHHHHHTTSBCT--T---SCBCHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHcCCC----Ch---hhccccCCCc-----HHHHHHHHHHHHHcCCccc--C---CCcChhhhhhccccCCHHHHHH
Confidence 888887742 22 2234554443 3677889999999999952 2 2599999999999999999999
Q ss_pred HHHHH
Q 000107 1044 VLDDL 1048 (2191)
Q Consensus 1044 l~~~L 1048 (2191)
++...
T Consensus 530 l~~~~ 534 (773)
T 2xau_A 530 LIGSF 534 (773)
T ss_dssp HHHGG
T ss_pred HHhhc
Confidence 88754
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=395.72 Aligned_cols=342 Identities=19% Similarity=0.280 Sum_probs=259.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.|+++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987642 467999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.+..+....++.+..++|+.... .+..+.+|+|+||+++..++++ ....+..+++|||||+|.+.+.++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 122 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHHhhhhHHH
Confidence 9999998888889998888875421 1223578999999999888875 345678899999999999988776655
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc-----c---ccccccce
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE-----T---NFRPVPLE 734 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~-----~---~~RpvpL~ 734 (2191)
+..++..+ ++..|+|+||||+++ .+.+++...+.. . ...+..+.
T Consensus 200 ~~~i~~~~--------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (410)
T 2j0s_A 200 IYDVYRYL--------------------------PPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIK 251 (410)
T ss_dssp HHHHHTTS--------------------------CTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEE
T ss_pred HHHHHHhC--------------------------ccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCce
Confidence 54443221 356899999999974 333333221110 0 00111111
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
.++... ... ....+.+..++... ..+++||||++++.++.++..|.+.
T Consensus 252 ~~~~~~----~~~--------------~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~------------ 299 (410)
T 2j0s_A 252 QFFVAV----ERE--------------EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREA------------ 299 (410)
T ss_dssp EEEEEE----SST--------------THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHT------------
T ss_pred EEEEEe----CcH--------------HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhC------------
Confidence 111100 000 00112333333332 3469999999999999888877541
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
...+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++
T Consensus 300 ----------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 300 ----------------------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp ----------------------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred ----------------------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 1248889999999999999999999999999999999999999999999987
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH---HHhhhccCCCCc
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK---IMGLLNESCPPL 948 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~---~~~ll~~~l~~l 948 (2191)
..+. +...|.||+|||||.| ..|.|++++++.+... +.+++...++++
T Consensus 352 ~~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 352 DLPN----NRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp SCCS----SHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred CCCC----CHHHHHHhcccccCCC--CceEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 7654 7889999999999998 7899999999877554 444555555433
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=387.52 Aligned_cols=341 Identities=19% Similarity=0.276 Sum_probs=257.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC-CeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g-knlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+++.||.+|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPL--FLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHH
Confidence 779999999999999999999999986 7776 799999999999999999999877654 467899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+..++...++.+..++|+..... ...+.+|+|+||+++..++.+ ....+.++++||+||+|.+.+.++...+
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~~~~ 168 (367)
T 1hv8_A 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMGFIKDV 168 (367)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTTTHHHH
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhchHHHH
Confidence 99999998888888888887653211 112578999999998877764 3446789999999999999887665555
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhccccccccccccceEEEEecc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALYETNFRPVPLEEYIKVGN 741 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~~~~~RpvpL~e~i~~~~ 741 (2191)
..++..+ ....|+|+||||+++. ..+..+++...+........+...+...
T Consensus 169 ~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (367)
T 1hv8_A 169 EKILNAC--------------------------NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEV- 221 (367)
T ss_dssp HHHHHTS--------------------------CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEEC-
T ss_pred HHHHHhC--------------------------CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEe-
Confidence 5444322 3568999999998752 2333444432221111111222211100
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
...+.+..++..+...+.++||||++++.++.++..|.+.
T Consensus 222 ---------------------~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------- 261 (367)
T 1hv8_A 222 ---------------------NENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDI------------------- 261 (367)
T ss_dssp ---------------------CGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred ---------------------ChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 0111122222222245689999999999999888877541
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcc
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~ 901 (2191)
..++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 262 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~--- 317 (367)
T 1hv8_A 262 ---------------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ--- 317 (367)
T ss_dssp ---------------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS---
T ss_pred ---------------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC---
Confidence 23488999999999999999999999999999999999999999999999876644
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHH---hhhccCCCC
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM---GLLNESCPP 947 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~---~ll~~~l~~ 947 (2191)
+..+|.||+|||||.| ..|.|++++++.+...+. +.+...+++
T Consensus 318 -s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 318 -NPESYMHRIGRTGRAG--KKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp -CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred -CHHHhhhcccccccCC--CccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 8889999999999999 689999999987755443 444444443
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=415.89 Aligned_cols=342 Identities=18% Similarity=0.194 Sum_probs=139.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.++||..|+|+|.++++. ++.+ +++|++||||||||++|+++++..+... ++++|||+|+++||.
T Consensus 99 l~~~l~~~l~~~g~~~p~~~Q~~ai~~--il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 176 (479)
T 3fmp_B 99 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (479)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHH
Confidence 789999999999999999999999987 7765 9999999999999999999999877643 338999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-chhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~RG~ 661 (2191)
|+++.++.+.... ++.+....++.... ......+|+|+||+++..++.+. ....+.++++|||||+|.+.+. ++..
T Consensus 177 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 255 (479)
T 3fmp_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 255 (479)
T ss_dssp HHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHHTSTTHHH
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHhhcCCcHH
Confidence 9999998876643 56666666654322 22345789999999988777541 2345689999999999998863 3332
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEEEEec
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~i~~~ 740 (2191)
.+..++ .. .+.+.|+|+||||+++ ...++..+. +.|....+...
T Consensus 256 ~~~~i~----~~----------------------~~~~~~~i~~SAT~~~~~~~~~~~~~---------~~~~~i~~~~~ 300 (479)
T 3fmp_B 256 QSIRIQ----RM----------------------LPRNCQMLLFSATFEDSVWKFAQKVV---------PDPNVIKLKRE 300 (479)
T ss_dssp HHHHHH----TT----------------------SCTTSEEEEEESCCCHHHHHHHHHHS---------SSEEEEEEC--
T ss_pred HHHHHH----hh----------------------CCccceEEEEeCCCCHHHHHHHHHHc---------CCCeEEecccc
Confidence 222221 11 1356899999999985 223332221 11111111100
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhh
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~ 820 (2191)
... ...+................+..++... .++++||||++++.|+.++..|...
T Consensus 301 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~------------------ 356 (479)
T 3fmp_B 301 EET----LDTIKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKE------------------ 356 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC----cCCceEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhC------------------
Confidence 000 0000000000000011222333333322 3478999999999999888777431
Q ss_pred HHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCC--
Q 000107 821 TSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG-- 898 (2191)
Q Consensus 821 ~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g-- 898 (2191)
..++.+|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+.
T Consensus 357 ----------------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~ 414 (479)
T 3fmp_B 357 ----------------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 414 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC
Confidence 23488899999999999999999999999999999999999999999999876542
Q ss_pred CcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 899 ~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
..+.+..+|.||+|||||.| ..|.|++++++.+...
T Consensus 415 ~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~ 450 (479)
T 3fmp_B 415 DGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMN 450 (479)
T ss_dssp --------------------------------------
T ss_pred ccCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHH
Confidence 22347789999999999999 7899999998765333
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=399.37 Aligned_cols=344 Identities=19% Similarity=0.250 Sum_probs=244.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
+++.+.+.+.+.||..|+++|.++++. ++.|+++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 47 LSESLLRGIYAYGFEKPSAIQQRAILP--CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHhHH--HhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987764 467899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.++.++...+..+...+|+..... ...+++|+|+||+++..++.+ ....+..+++|||||+|++.+.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~~ 202 (414)
T 3eiq_A 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFKD 202 (414)
T ss_dssp HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHHTTTHH
T ss_pred HHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhccCcHH
Confidence 99999998888888888877653211 225679999999999888765 44567889999999999998877766
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhcccc-c---cccccccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALY-E---TNFRPVPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~-~---~~~RpvpL~e 735 (2191)
.+..++.++ .++.|+|+||||+++ ...+.. ++..... . ....+..+..
T Consensus 203 ~~~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (414)
T 3eiq_A 203 QIYDIFQKL--------------------------NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQ 256 (414)
T ss_dssp HHHHHHTTS--------------------------CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCE
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceE
Confidence 665554333 357899999999874 222222 2211100 0 0001111111
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... . .....+.+..++.. ..++++||||++++.|+.++..|.+.
T Consensus 257 ~~~~~~----~--------------~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------- 303 (414)
T 3eiq_A 257 FYINVE----R--------------EEWKLDTLCDLYET--LTITQAVIFINTRRKVDWLTEKMHAR------------- 303 (414)
T ss_dssp EEEECS----S--------------STTHHHHHHHHHHS--SCCSSCEEECSCHHHHHHHHHHHHTT-------------
T ss_pred EEEEeC----h--------------HHhHHHHHHHHHHh--CCCCcEEEEeCCHHHHHHHHHHHHhc-------------
Confidence 111000 0 00011122222221 13479999999999999888777431
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
..++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++.
T Consensus 304 ---------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 304 ---------------------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp ---------------------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESS
T ss_pred ---------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH---HhhhccCCCCc
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI---MGLLNESCPPL 948 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~---~~ll~~~l~~l 948 (2191)
.+. +..+|.||+|||||.| ..|.|++++++.+...+ .++++..++.+
T Consensus 357 ~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 357 LPT----NRENYIHRIGRGGRFG--RKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp CCS----STHHHHHHSCCC---------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CCC----CHHHhhhhcCcccCCC--CCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 654 8889999999999998 68999999998765544 44555554433
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=386.65 Aligned_cols=329 Identities=19% Similarity=0.253 Sum_probs=247.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHH--HTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987653 355899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-ch
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NR 659 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~R 659 (2191)
++.+.++.... ++++..++|+..... + ...++|+|+||+++..++.+ ....+.++++|||||+|.+.++ ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~~~~~~~ 170 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM 170 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHHTSSHHH
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHHhhccch
Confidence 99999887765 788888888754211 1 12368999999999887765 3446789999999999999764 23
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH-HHHHhhccc--c-cccc--cccc
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA-VADWLQAAL--Y-ETNF--RPVP 732 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~-la~wL~a~l--~-~~~~--Rpvp 732 (2191)
...+..++.. .+...|+|+||||+++ ... +..++.... + .... ....
T Consensus 171 ~~~~~~~~~~--------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (391)
T 1xti_A 171 RRDVQEIFRM--------------------------TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 224 (391)
T ss_dssp HHHHHHHHHT--------------------------SCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTT
T ss_pred HHHHHHHHhh--------------------------CCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCccc
Confidence 3333322211 1356899999999986 333 334443221 1 0110 1111
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+..++.... .. .....+..++... .++++||||++++.|+.++..|...
T Consensus 225 ~~~~~~~~~-----~~--------------~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~---------- 273 (391)
T 1xti_A 225 LQQYYVKLK-----DN--------------EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQ---------- 273 (391)
T ss_dssp CEEEEEECC-----GG--------------GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHT----------
T ss_pred ceEEEEEcC-----ch--------------hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhC----------
Confidence 122111100 00 0112233333322 5689999999999999988877541
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
...+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|++++||
T Consensus 274 ------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi 323 (391)
T 1xti_A 274 ------------------------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 323 (391)
T ss_dssp ------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE
T ss_pred ------------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE
Confidence 12388899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhH
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~ 934 (2191)
++..+. +..+|.||+|||||.| ..|.|++++.+.+.
T Consensus 324 ~~~~p~----s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 324 NYDMPE----DSDTYLHRVARAGRFG--TKGLAITFVSDEND 359 (391)
T ss_dssp ESSCCS----SHHHHHHHHCBCSSSC--CCCEEEEEECSHHH
T ss_pred EeCCCC----CHHHHHHhcccccCCC--CceEEEEEEcccch
Confidence 876654 8899999999999999 78999999987643
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=404.30 Aligned_cols=334 Identities=19% Similarity=0.293 Sum_probs=255.4
Q ss_pred CcHHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 509 Lp~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
+++.+.+.|++ +||..|+|+|.++|+. ++.|+++++++|||+|||++|.+|++. .++++|||+|+++|+.|++
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~--il~g~d~lv~~pTGsGKTl~~~lpal~----~~g~~lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINV--TMAGKEVFLVMPTGGGKSLCYQLPALC----SDGFTLVICPLISLMEDQL 101 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHH--HHTTCCEEEECCTTSCTTHHHHHHHHT----SSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHH--HHcCCCEEEEECCCChHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHH
Confidence 67889999988 7999999999999987 899999999999999999999999875 4679999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC----------CCCCCceEEEchHHHH---HHHHHhhhcCCCCccceEEEcccccc
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS----------LPKDTSVAVCTIEKAN---SLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~----------l~~~~~IiV~TpEkl~---~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+.+..+ |+.+..+.|+..... .....+|+|+|||++. .+++.+.....+.++++|||||+|++
T Consensus 102 ~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i 177 (591)
T 2v1x_A 102 MVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC 177 (591)
T ss_dssp HHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred HHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence 988775 788888877654321 2456899999999884 34444333335678999999999999
Q ss_pred cccc--hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccc
Q 000107 655 ADQN--RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETN 727 (2191)
Q Consensus 655 ~d~~--RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~ 727 (2191)
.+++ +.+.+.. +..++.. .+++|+|+||||+++ ..++..|++.. .+...
T Consensus 178 s~~g~dfr~~~~~-l~~l~~~-----------------------~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~ 233 (591)
T 2v1x_A 178 SQWGHDFRPDYKA-LGILKRQ-----------------------FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS 233 (591)
T ss_dssp STTCTTCCGGGGG-GGHHHHH-----------------------CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC
T ss_pred cccccccHHHHHH-HHHHHHh-----------------------CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC
Confidence 9876 4444433 2222222 246899999999876 35677777643 22222
Q ss_pred cccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh---cCCcEEEEeCchhHHHHHHHHHHHHHh
Q 000107 728 FRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ---EGHSVLIFCSSRKGCESTARHVSKFLK 804 (2191)
Q Consensus 728 ~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~---~g~~vLVF~~Sr~~~e~lA~~L~~~l~ 804 (2191)
+....+...+.... .........+.+.+. .+.++||||+|++.|+.++..|...
T Consensus 234 ~~r~nl~~~v~~~~---------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~-- 290 (591)
T 2v1x_A 234 FNRPNLYYEVRQKP---------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL-- 290 (591)
T ss_dssp CCCTTEEEEEEECC---------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--
T ss_pred CCCcccEEEEEeCC---------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--
Confidence 22222221111100 001111112222222 4689999999999999999888541
Q ss_pred hcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCC
Q 000107 805 KFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884 (2191)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVN 884 (2191)
+..+.++||+|+.++|..+++.|++|.++|||||+++++|||
T Consensus 291 --------------------------------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 291 --------------------------------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp --------------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred --------------------------------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 234899999999999999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 885 LPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 885 LPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
+|++++||++..+. +...|.||+|||||.| ..|.|++++.+.+...+..++..
T Consensus 333 ~p~V~~VI~~~~p~----s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 333 KPDVRFVIHHSMSK----SMENYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp CSCEEEEEESSCCS----SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTTT
T ss_pred cccccEEEEeCCCC----CHHHHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHhh
Confidence 99999999987766 8899999999999999 78999999999998887777754
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=377.47 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=245.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
|++.+.+.++++||..|+|+|.++++. +++++++++++|||+|||++|.+++++. +.++||++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~--i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPL--MLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHH
Confidence 578899999999999999999999987 8899999999999999999999998763 7899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
.+.+++...+.++..++|+..... ...+.+|+|+||+++..++.+ ....+.++++||+||+|.+.++++...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 152 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMGFIDDIKI 152 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccccHHHHHH
Confidence 999988888889988888654211 112478999999998877664 334578899999999999988777766666
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhcccc-ccccccccceEEEEeccc
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALY-ETNFRPVPLEEYIKVGNA 742 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~ 742 (2191)
++..+ ....++++||||+++. ..+..|+..... ........+...+....
T Consensus 153 ~~~~~--------------------------~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (337)
T 2z0m_A 153 ILAQT--------------------------SNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVK- 205 (337)
T ss_dssp HHHHC--------------------------TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECS-
T ss_pred HHhhC--------------------------CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeC-
Confidence 65443 2457899999999752 234444432211 11111111111111000
Q ss_pred cccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 743 ~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
.+.......+. ...++++||||++++.++.++..|.
T Consensus 206 --------------------~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~---------------------- 241 (337)
T 2z0m_A 206 --------------------DDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD---------------------- 241 (337)
T ss_dssp --------------------SSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----------------------
T ss_pred --------------------hHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----------------------
Confidence 00111111111 1346899999999999887654331
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCccc
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFI 902 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~i 902 (2191)
.+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 242 ----------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~---- 295 (337)
T 2z0m_A 242 ----------------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ---- 295 (337)
T ss_dssp ----------------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS----
T ss_pred ----------------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC----
Confidence 277899999999999999999999999999999999999999999999876654
Q ss_pred CcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
+..+|.||+|||||.| ..|.|++++. .+...+.
T Consensus 296 s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~ 328 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEK 328 (337)
T ss_dssp SHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHH
T ss_pred CHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHH
Confidence 8889999999999999 6899999998 5544433
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=397.61 Aligned_cols=348 Identities=18% Similarity=0.253 Sum_probs=149.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+...||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .++++||++|+++|+.|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 105 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987654 466999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+.+++...++++..++|+..... ...+.+|+|+||+++...+.+ ....+.++++||+||+|++.+.++...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~~~~~~ 183 (394)
T 1fuu_A 106 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFKEQI 183 (394)
T ss_dssp HHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCCcHHHH
Confidence 99999998888899998888754211 112578999999998877765 3456788999999999999887777666
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhccccccccccccceEEEEecc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALYETNFRPVPLEEYIKVGN 741 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~~~~~RpvpL~e~i~~~~ 741 (2191)
..++..+ ++..|+|+||||+++. +.+..|+... ....+....
T Consensus 184 ~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------~~~~~~~~~ 227 (394)
T 1fuu_A 184 YQIFTLL--------------------------PPTTQVVLLSATMPNDVLEVTTKFMRNP----------VRILVKKDE 227 (394)
T ss_dssp HHHHHHS--------------------------CTTCEEEEECSSCCHHHHHHHHHHCCSC----------EEEEECC--
T ss_pred HHHHHhC--------------------------CCCceEEEEEEecCHHHHHHHHHhcCCC----------eEEEecCcc
Confidence 6655443 3568999999999851 2223333221 111110000
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
.... .+................+..++... .++++||||++++.++.++..|.+.
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~------------------- 282 (394)
T 1fuu_A 228 LTLE----GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRND------------------- 282 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCC----CceEEEEEcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 0000 00000000000001112223333221 3579999999999998888776431
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcc
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~ 901 (2191)
...+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 283 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~--- 338 (394)
T 1fuu_A 283 ---------------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA--- 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC---
Confidence 12378899999999999999999999999999999999999999999999766543
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHH---hhhccCCCCc
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM---GLLNESCPPL 948 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~---~ll~~~l~~l 948 (2191)
+..+|.||+|||||.| ..|.|++++++.+...+. +++...++++
T Consensus 339 -s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 339 -NKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp --------------------------------------------------
T ss_pred -CHHHHHHHcCcccCCC--CCceEEEEEchhHHHHHHHHHHHhCCccccc
Confidence 7889999999999998 689999999987654433 3344444433
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=395.06 Aligned_cols=331 Identities=22% Similarity=0.284 Sum_probs=250.4
Q ss_pred CcHHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 509 Lp~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
|++.+.+.+++ +||..|+|+|.++++. ++.|+++++++|||+|||++|.++++. .++++|||+|+++|+.|++
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~Q~~~i~~--il~g~d~lv~apTGsGKTl~~~lp~l~----~~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPGQEEIIDT--VLSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHH--HHTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHH--HHcCCCEEEECCCCcHHHHHHHHHHHH----hCCCEEEECChHHHHHHHH
Confidence 56788889988 8999999999999987 899999999999999999999999874 3678999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN- 658 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~- 658 (2191)
+.+..+ |+.+..+.|+..... .....+|+|+|||++.... +.......++++|||||+|++.+++
T Consensus 83 ~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~--~~~~l~~~~~~~vViDEaH~i~~~g~ 156 (523)
T 1oyw_A 83 DQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN--FLEHLAHWNPVLLAVDEAHCISQWGH 156 (523)
T ss_dssp HHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT--HHHHHTTSCEEEEEESSGGGGCTTSS
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH--HHHHHhhCCCCEEEEeCccccCcCCC
Confidence 888764 778877777653211 1235799999999974321 1111234789999999999999875
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhcc---cccccccccc
Q 000107 659 -RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAA---LYETNFRPVP 732 (2191)
Q Consensus 659 -RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~---l~~~~~Rpvp 732 (2191)
+.+.+..+ ..++.. .+++++|+||||+++. .++.+|++.. .+...+....
T Consensus 157 ~fr~~~~~l-~~l~~~-----------------------~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~ 212 (523)
T 1oyw_A 157 DFRPEYAAL-GQLRQR-----------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN 212 (523)
T ss_dssp CCCHHHHGG-GGHHHH-----------------------CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT
T ss_pred ccHHHHHHH-HHHHHh-----------------------CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc
Confidence 34444433 223221 2458999999998763 6678888632 2222221111
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+...+... ....+.+..++... .++++||||+|++.|+.++..|.+.
T Consensus 213 l~~~v~~~---------------------~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~---------- 259 (523)
T 1oyw_A 213 IRYMLMEK---------------------FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSK---------- 259 (523)
T ss_dssp EEEEEEEC---------------------SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT----------
T ss_pred eEEEEEeC---------------------CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHC----------
Confidence 11111100 01112233333321 4679999999999999999888541
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
...+..|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 260 ------------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 260 ------------------------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp ------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred ------------------------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 12389999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccC
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~ 944 (2191)
++..+. +..+|.||+|||||.| ..|.|++++.+.+...+..++...
T Consensus 310 ~~~~p~----s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~~ 355 (523)
T 1oyw_A 310 HFDIPR----NIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (523)
T ss_dssp ESSCCS----SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHHHTS
T ss_pred EECCCC----CHHHHHHHhccccCCC--CCceEEEEeCHHHHHHHHHHHhcc
Confidence 987765 8899999999999999 789999999999988888887763
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=374.35 Aligned_cols=339 Identities=18% Similarity=0.206 Sum_probs=239.7
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
+.+.+.+++ .|| +|+|+|.++++. ++.|+|++++||||+|||++|+++++..+ ..++++||++|+++|+.|+++.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~--i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKR--IVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHH--HTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHH--HhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHH
Confidence 345566665 566 899999999987 88999999999999999999888877654 5688999999999999999999
Q ss_pred HHHHhhccCCeEEEEeccCCCC-------CC-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc---
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGG-------SL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN--- 658 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~-------~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~--- 658 (2191)
++.++. .++++..++|+.... .+ ...++|+|+||+++..+++. ..+.++++|||||+|++.+++
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchh
Confidence 999877 889999999876531 11 12389999999998777664 356789999999999987543
Q ss_pred --------hhHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc-CCCH---HHHHHHhhccccc
Q 000107 659 --------RGYL-LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT-MPNV---AAVADWLQAALYE 725 (2191)
Q Consensus 659 --------RG~~-lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT-L~N~---~~la~wL~a~l~~ 725 (2191)
+... ++.++..++..... .........|+++|||| .+.. ..+..+++.....
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~---------------~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIY---------------ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR 223 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCC---------------CCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhh---------------hhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc
Confidence 2222 45555554311000 00011256899999999 4431 2233333322211
Q ss_pred cccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhh
Q 000107 726 TNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKK 805 (2191)
Q Consensus 726 ~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~ 805 (2191)
....+..+...+.. ....+.+..++.. .++++||||++++.|+.++..|...
T Consensus 224 ~~~~~~~i~~~~~~----------------------~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--- 275 (414)
T 3oiy_A 224 LVSVARNITHVRIS----------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--- 275 (414)
T ss_dssp CCCCCCSEEEEEES----------------------SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT---
T ss_pred cccccccchheeec----------------------cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc---
Confidence 11111112211110 1123344555554 3589999999999999998887541
Q ss_pred cccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE-EEcCCCCHHHHHHHHHHhhcCCceEEEe----ccccc
Q 000107 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA-YHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLA 880 (2191)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa-~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa 880 (2191)
...+. .+||. +|+ ++.|++|.++|||| |++++
T Consensus 276 -------------------------------------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 276 -------------------------------------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp -------------------------------------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCC
T ss_pred -------------------------------------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhh
Confidence 12265 78884 454 99999999999999 99999
Q ss_pred ccCCCCC-ceEEeecCCCCCcccCcccccccccccCCCCCC--CceEEEEEeChhh-HHHHHhhhc--cCCC
Q 000107 881 AGVNLPA-RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID--TKGESMLICKPEE-VKKIMGLLN--ESCP 946 (2191)
Q Consensus 881 ~GVNLPa-v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d--~~Ge~ill~~~~e-~~~~~~ll~--~~l~ 946 (2191)
+|||+|+ +++||+++.+.. .+..+|+||+|||||.|.+ ..|.|++++.+.. ...+.+++. ..++
T Consensus 313 ~GiDip~~v~~VI~~~~p~~--~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 382 (414)
T 3oiy_A 313 RGVDLPERIKYVIFWGTPSG--PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEE 382 (414)
T ss_dssp CCCCCTTTCCEEEEESCCTT--TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccCEEEEECCCCC--CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhccccccc
Confidence 9999999 999998766510 2789999999999999966 6899999995533 345555665 5554
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=370.64 Aligned_cols=352 Identities=16% Similarity=0.213 Sum_probs=222.8
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
+|+|+|.++++. ++.|+++++++|||+|||++|.+++++.+... ++++|||+|+++|+.|+++.+.+++...++
T Consensus 4 ~~~~~Q~~~i~~--~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALP--AKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHH--HhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 799999999987 88999999999999999999999999888763 778999999999999999999999988899
Q ss_pred eEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 600 HVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 600 ~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
++..++|+..... ...+++|+|+||+++..++.. ... .+.++++|||||+|++.+.+ . +..++.++....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~-~~~~~~~~~~~~ 156 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH--P-YNQIMFRYLDHK 156 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC--H-HHHHHHHHHHHH
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc--h-HHHHHHHHHHhh
Confidence 9999999874322 123479999999998887764 333 67889999999999998753 2 444443332221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC------------HHHHHHHhhcccccc---------ccccccc
Q 000107 675 GEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN------------VAAVADWLQAALYET---------NFRPVPL 733 (2191)
Q Consensus 675 ~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N------------~~~la~wL~a~l~~~---------~~RpvpL 733 (2191)
.. ....+.+|+++||||+++ ...+..++++..+.. .+...|.
T Consensus 157 ~~-----------------~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~ 219 (555)
T 3tbk_A 157 LG-----------------ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQ 219 (555)
T ss_dssp TS-----------------SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCC
T ss_pred hc-----------------cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCc
Confidence 10 011356899999999853 223445555332211 1112222
Q ss_pred eEEEEeccccccchhh--------------------------------------HHH-----------------------
Q 000107 734 EEYIKVGNAIYSKKMD--------------------------------------VVR----------------------- 752 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~--------------------------------------~~r----------------------- 752 (2191)
..++.+.......... .+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (555)
T 3tbk_A 220 KISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 299 (555)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHH
T ss_pred eEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 2222222100000000 000
Q ss_pred -------------------------------HHH------------------------------HhhccCCCChhHHHHH
Q 000107 753 -------------------------------TIL------------------------------TAANLGGKDPDHIVEL 771 (2191)
Q Consensus 753 -------------------------------~l~------------------------------~~~~~~~~d~d~l~~L 771 (2191)
.+. ........+...+..+
T Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 379 (555)
T 3tbk_A 300 LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLV 379 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHH
Confidence 000 0000011223344555
Q ss_pred HHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEE
Q 000107 772 CDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYH 849 (2191)
Q Consensus 772 l~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~h 849 (2191)
+.+... .++++||||+++..++.++..|......... ....+.+.+...+
T Consensus 380 l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~g~~~~~~ 431 (555)
T 3tbk_A 380 LQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL----------------------------KPGILTGRGRTNR 431 (555)
T ss_dssp HHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC----------------------------CEEECCC------
T ss_pred HHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce----------------------------eeeEEEecCCccc
Confidence 555443 3489999999999999999888653110000 0112234567778
Q ss_pred cCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEE
Q 000107 850 HAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 850 HagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
||+|++++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +..+|.||+|| ||.. .|.+|++
T Consensus 432 ~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~----s~~~~~Qr~GR-gR~~---~g~~~~l 503 (555)
T 3tbk_A 432 ATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG----NVIKMIQTRGR-GRAR---DSKCFLL 503 (555)
T ss_dssp --------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS----SCCCEECSSCC-CTTT---SCEEEEE
T ss_pred ccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC----CHHHHHHhcCc-CcCC---CceEEEE
Confidence 999999999999999999 9999999999999999999999999887765 88999999999 8874 8999999
Q ss_pred eChhhHH
Q 000107 929 CKPEEVK 935 (2191)
Q Consensus 929 ~~~~e~~ 935 (2191)
+.+.+..
T Consensus 504 ~~~~~~~ 510 (555)
T 3tbk_A 504 TSSADVI 510 (555)
T ss_dssp ESCHHHH
T ss_pred EcCCCHH
Confidence 9886543
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=375.24 Aligned_cols=354 Identities=18% Similarity=0.237 Sum_probs=196.4
Q ss_pred CCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
+..+|+|+|.++++. ++.++++++++|||+|||++|.+++++.+... ++++|||+|+++|+.|+++.+.+++..
T Consensus 4 ~~~~~~~~Q~~~i~~--~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHH--HHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345899999999987 88999999999999999999999999887763 678999999999999999999999988
Q ss_pred cCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 597 LGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
.++++..++|+..... ...+++|+|+||+++..++.+ ... .+.++++|||||+|++.+.+. +..++.++.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~ 156 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYL 156 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTSH---HHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcch---HHHHHHHHH
Confidence 8999999988764322 113579999999998887764 333 688999999999999987642 444443332
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHHHH----------hhcccccc---------cccc
Q 000107 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVADW----------LQAALYET---------NFRP 730 (2191)
Q Consensus 672 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la~w----------L~a~l~~~---------~~Rp 730 (2191)
..... ...+..|+|+||||++ |..++.+| ++...+.. .+..
T Consensus 157 ~~~~~------------------~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~ 218 (556)
T 4a2p_A 157 EQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMN 218 (556)
T ss_dssp HHHHC------------------C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTC
T ss_pred Hhhhc------------------ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCC
Confidence 21110 0135689999999984 33334444 33221111 1111
Q ss_pred ccceEEEEeccccccchhh-------H------------------------------H----------------------
Q 000107 731 VPLEEYIKVGNAIYSKKMD-------V------------------------------V---------------------- 751 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~-------~------------------------------~---------------------- 751 (2191)
.|....+.+.......... . +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (556)
T 4a2p_A 219 KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 298 (556)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2222222221100000000 0 0
Q ss_pred --------------------------------HHHH---------------------------Hhhc---cCCCChhHHH
Q 000107 752 --------------------------------RTIL---------------------------TAAN---LGGKDPDHIV 769 (2191)
Q Consensus 752 --------------------------------r~l~---------------------------~~~~---~~~~d~d~l~ 769 (2191)
..+. .... ....+...+.
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~ 378 (556)
T 4a2p_A 299 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELV 378 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHH
Confidence 0000 0000 0011223344
Q ss_pred HHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 770 ELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 770 ~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
.++.+.. ..+.++||||+++..++.++..|.+....... ....+.+.+..
T Consensus 379 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~g~~~~ 430 (556)
T 4a2p_A 379 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI----------------------------KPGVLMGRGRR 430 (556)
T ss_dssp HHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC----------------------------CEEC-------
T ss_pred HHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee----------------------------eeeEEEccCCc
Confidence 4444443 45689999999999999888877542100000 00112345577
Q ss_pred EEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEE
Q 000107 848 YHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
.+||+|+.++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|.||+|| ||.. .|.+|
T Consensus 431 ~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~----s~~~~~Qr~GR-gR~~---~g~~~ 502 (556)
T 4a2p_A 431 DQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKCI 502 (556)
T ss_dssp -----------------------CCEEEEEC-----------CEEEEETCCS----CHHHHHHC------------CCEE
T ss_pred ccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CceEE
Confidence 78999999999999999999 9999999999999999999999999887765 88999999999 9985 89999
Q ss_pred EEeChhhHH
Q 000107 927 LICKPEEVK 935 (2191)
Q Consensus 927 ll~~~~e~~ 935 (2191)
+++.+.+..
T Consensus 503 ~l~~~~~~~ 511 (556)
T 4a2p_A 503 LVTSKTEVV 511 (556)
T ss_dssp EEESCHHHH
T ss_pred EEEeCcchH
Confidence 999886543
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=380.12 Aligned_cols=361 Identities=15% Similarity=0.203 Sum_probs=205.3
Q ss_pred HHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC----CEEEEEchhHHHHHHHHHHH
Q 000107 515 SIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG----KMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 515 ~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g----~kaL~I~P~raLA~q~~~~l 590 (2191)
+.+..+||.+|+|+|.++++. ++.|+|+|+++|||+|||++|.++++..+...+ +++|||+|+++|+.|+.+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~--~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALP--AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHH--HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 345678999999999999987 889999999999999999999999998877543 78999999999999999999
Q ss_pred HHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHH
Q 000107 591 EVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 591 ~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
++++...++++..++|+..... +..+++|+||||+++...+.+ ... .+.++++|||||+|++.+.. .+..
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~---~~~~ 156 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH---PYNM 156 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC---HHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc---cHHH
Confidence 9998888999999998764322 113589999999998877764 223 57889999999999998653 2333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC---------HHHHHHH---hhccccccc------
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN---------VAAVADW---LQAALYETN------ 727 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N---------~~~la~w---L~a~l~~~~------ 727 (2191)
++.++....-. ....+.+|+|+||||+.+ ...+... ++...+.+.
T Consensus 157 i~~~~l~~~~~-----------------~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 219 (696)
T 2ykg_A 157 IMFNYLDQKLG-----------------GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEE 219 (696)
T ss_dssp HHHHHHHHHHT-----------------TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHH
T ss_pred HHHHHHHHhhc-----------------ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHH
Confidence 33222111000 012356899999999862 2222222 222111110
Q ss_pred ---cccccceEEEEeccccc---cchh----hHHHHHH------------------------------------------
Q 000107 728 ---FRPVPLEEYIKVGNAIY---SKKM----DVVRTIL------------------------------------------ 755 (2191)
Q Consensus 728 ---~RpvpL~e~i~~~~~~~---~~~~----~~~r~l~------------------------------------------ 755 (2191)
+...|...+..+..... .... ..+..+.
T Consensus 220 l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (696)
T 2ykg_A 220 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 299 (696)
T ss_dssp HHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------
T ss_pred HHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccc
Confidence 00111111111110000 0000 0000000
Q ss_pred -----------------------------------------------------------H--------------hhccCC
Q 000107 756 -----------------------------------------------------------T--------------AANLGG 762 (2191)
Q Consensus 756 -----------------------------------------------------------~--------------~~~~~~ 762 (2191)
. ......
T Consensus 300 ~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 379 (696)
T 2ykg_A 300 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 379 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCC
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0 000011
Q ss_pred CChhHHHHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhh
Q 000107 763 KDPDHIVELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEE 840 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~ 840 (2191)
.....+..++.+.. ..++++||||+++..|+.++..|.......... ...
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~----------------------------~~~ 431 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK----------------------------PGI 431 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCC----------------------------EEC
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccc----------------------------eeE
Confidence 12233444444443 145799999999999999988886521000000 011
Q ss_pred hcCCcEEEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 841 TLPSGVAYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 841 ~l~~GVa~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+.+.|...+||+|++++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +..+|+||+|| ||..
T Consensus 432 l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~----s~~~~~Qr~GR-GR~~- 505 (696)
T 2ykg_A 432 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG----NVIKMIQTRGR-GRAR- 505 (696)
T ss_dssp -----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC------CCCC----------C-
T ss_pred EEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC----CHHHHHHhhcc-CcCC-
Confidence 223445566999999999999999998 9999999999999999999999999987765 78899999999 9974
Q ss_pred CCceEEEEEeChhhHH
Q 000107 920 DTKGESMLICKPEEVK 935 (2191)
Q Consensus 920 d~~Ge~ill~~~~e~~ 935 (2191)
.|.|+++++..+..
T Consensus 506 --~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 506 --GSKCFLLTSNAGVI 519 (696)
T ss_dssp --CCEEEEEESCHHHH
T ss_pred --CceEEEEecCCCHH
Confidence 89999999886653
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=376.65 Aligned_cols=355 Identities=17% Similarity=0.236 Sum_probs=205.6
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.|+..|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|++..|++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~--~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHH--HHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 5778999999999987 88999999999999999999999999888764 77999999999999999999999998
Q ss_pred ccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 596 PLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
..++++..++|+..... +..+++|+|+||+++..++.+ ... .+.++++|||||+|++.+.+ . +..++.++
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~-~~~i~~~~ 396 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRY 396 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--H-HHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--c-HHHHHHHH
Confidence 88999999999874322 123679999999998877764 333 67889999999999998753 2 44444443
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC------------CHHHHHHHhhccccccc---------cc
Q 000107 671 RYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP------------NVAAVADWLQAALYETN---------FR 729 (2191)
Q Consensus 671 r~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~------------N~~~la~wL~a~l~~~~---------~R 729 (2191)
...... ...+.+|+|+||||++ +...+..+++...+... +.
T Consensus 397 ~~~~~~------------------~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~ 458 (797)
T 4a2q_A 397 LEQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM 458 (797)
T ss_dssp HHHHHT------------------TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHS
T ss_pred HHHhhc------------------cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhc
Confidence 322111 0235689999999984 23334455554322110 00
Q ss_pred cccceEEEEeccccccchhh-------------------------------------HH---------------------
Q 000107 730 PVPLEEYIKVGNAIYSKKMD-------------------------------------VV--------------------- 751 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~-------------------------------------~~--------------------- 751 (2191)
..|...++.+.......... .+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (797)
T 4a2q_A 459 NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538 (797)
T ss_dssp CCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHH
T ss_pred CCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHH
Confidence 11222222211100000000 00
Q ss_pred ---------------------------------HHHH---------------------------Hhhcc---CCCChhHH
Q 000107 752 ---------------------------------RTIL---------------------------TAANL---GGKDPDHI 768 (2191)
Q Consensus 752 ---------------------------------r~l~---------------------------~~~~~---~~~d~d~l 768 (2191)
..+. ..... ...+...+
T Consensus 539 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L 618 (797)
T 4a2q_A 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEEL 618 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHH
Confidence 0000 00000 01122334
Q ss_pred HHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 769 VELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 769 ~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
..++.+.. ..+.++||||++++.++.++..|.......+. ......+.++
T Consensus 619 ~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~----------------------------~~~~l~G~~~ 670 (797)
T 4a2q_A 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI----------------------------KPGVLMGRGR 670 (797)
T ss_dssp HHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC----------------------------CCEEC-----
T ss_pred HHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc----------------------------cceEEEecCC
Confidence 44444433 34689999999999999888887541100000 0112234567
Q ss_pred EEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEE
Q 000107 847 AYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
..+||+|+..+|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|+||+|| ||.. .|.|
T Consensus 671 ~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~----s~~~~iQr~GR-GR~~---~g~~ 742 (797)
T 4a2q_A 671 RDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKC 742 (797)
T ss_dssp -----------------------CCSEEEEECC-------CCCSEEEEESCCS----CHHHHHTC-----------CCCE
T ss_pred cccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CceE
Confidence 788999999999999999999 9999999999999999999999999987765 88999999999 9984 8999
Q ss_pred EEEeChhhHH
Q 000107 926 MLICKPEEVK 935 (2191)
Q Consensus 926 ill~~~~e~~ 935 (2191)
|+++++.+..
T Consensus 743 i~l~~~~~~e 752 (797)
T 4a2q_A 743 ILVTSKTEVV 752 (797)
T ss_dssp EEEECCHHHH
T ss_pred EEEEeCCcHH
Confidence 9999886543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=342.57 Aligned_cols=333 Identities=18% Similarity=0.259 Sum_probs=229.4
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.|+|+|.+++.. ++.+ ++++++|||+|||+++.++++..+...++++|||+|+++|+.|+.+++.+++...+.++..
T Consensus 9 ~l~~~Q~~~i~~--~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAK--CKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHH--GGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHH--HhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 799999999986 7777 9999999999999999999988776678899999999999999999999886433447888
Q ss_pred EeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCC
Q 000107 604 YYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSD 680 (2191)
Q Consensus 604 ~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~ 680 (2191)
++|+..... ...+.+|+|+||+.+...+.+ ....+.++++|||||+|.+.+... ...++..+...
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~---~~~~~~~~~~~------- 153 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYA---YVFIAREYKRQ------- 153 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCH---HHHHHHHHHHH-------
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCCc---HHHHHHHHHhc-------
Confidence 888653211 112578999999998877654 344678899999999999975422 22333333322
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH---HHHHhhcccc----------ccccccccceEEEEeccc-ccc
Q 000107 681 SSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA---VADWLQAALY----------ETNFRPVPLEEYIKVGNA-IYS 745 (2191)
Q Consensus 681 s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~---la~wL~a~l~----------~~~~RpvpL~e~i~~~~~-~~~ 745 (2191)
.+..++++||||+.+ ..+ +..+++...+ ...+.+... .+...... ...
T Consensus 154 ----------------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 216 (494)
T 1wp9_A 154 ----------------AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF-EWVRVDLPEIYK 216 (494)
T ss_dssp ----------------CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE-EEEEECCCHHHH
T ss_pred ----------------CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCce-eEEecCCcHHHH
Confidence 246789999999863 344 4444442211 000111110 11110000 000
Q ss_pred chhhH---------------------------------------------------------------------------
Q 000107 746 KKMDV--------------------------------------------------------------------------- 750 (2191)
Q Consensus 746 ~~~~~--------------------------------------------------------------------------- 750 (2191)
.-...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (494)
T 1wp9_A 217 EVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSA 296 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 00000
Q ss_pred HHHHH----------------------------------HhhccCCCChhHHHHHHHHHH--hcCCcEEEEeCchhHHHH
Q 000107 751 VRTIL----------------------------------TAANLGGKDPDHIVELCDEVV--QEGHSVLIFCSSRKGCES 794 (2191)
Q Consensus 751 ~r~l~----------------------------------~~~~~~~~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~ 794 (2191)
..... ........+...+.+++.+.. ..+.++||||+++..++.
T Consensus 297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 376 (494)
T 1wp9_A 297 LRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKK 376 (494)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHH
Confidence 00000 000011112234455555554 357899999999999998
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcC--------CCCHHHHHHHHHHhh
Q 000107 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHA--------GLTVEEREVVETCYR 866 (2191)
Q Consensus 795 lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHa--------gLs~~eR~~Ve~~Fr 866 (2191)
++..|... +..+..+|| +|+..+|..+++.|+
T Consensus 377 l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 377 IVNELVKD----------------------------------------GIKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp HHHHHHHT----------------------------------------TCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred HHHHHHHc----------------------------------------CCCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 88777542 123777888 999999999999999
Q ss_pred cCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 867 KGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 867 ~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
+|.++|||||+++++|||+|++++||.++.+. +...|.||+|||||.| .|.+|+++.+...+
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~----~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP----SAIRSIQRRGRTGRHM---PGRVIILMAKGTRD 478 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCH----HHHHHHHHHTTSCSCC---CSEEEEEEETTSHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCC----CHHHHHHHHhhccCCC---CceEEEEEecCCHH
Confidence 99999999999999999999999999766543 7788999999999999 39999998876433
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-32 Score=367.81 Aligned_cols=348 Identities=16% Similarity=0.209 Sum_probs=221.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchhHHHHHHH-HHHHHHHhhcc
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPYVSICAEK-AEHLEVLLEPL 597 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~raLA~q~-~~~l~~l~~~l 597 (2191)
+|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|+ ++++++++..
T Consensus 7 ~l~~~Q~~~i~~--il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQP--ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHH--HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHH--HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 799999999987 88999999999999999999999998876652 27899999999999999 9999988765
Q ss_pred CCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHh----hhcCCCCccceEEEcccccccccc-hhHHHHHHHH
Q 000107 598 GRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRM----LEEGRLSEIGIIVIDELHMVADQN-RGYLLELLLT 668 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l----~~~~~L~~l~lVVIDEaH~l~d~~-RG~~lE~lL~ 668 (2191)
++++..++|+..... +....+|+|+||+++...+.+. .....+.++++|||||+|++.... ....+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 578888888865322 1245899999999987766321 133467889999999999986432 2222222222
Q ss_pred -HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC------------HHHHHHHhhc-ccccccc------
Q 000107 669 -KLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN------------VAAVADWLQA-ALYETNF------ 728 (2191)
Q Consensus 669 -kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N------------~~~la~wL~a-~l~~~~~------ 728 (2191)
+++...... ......+.+|+|+||||+.+ ...+..+++. .+.....
T Consensus 164 ~~~~~~~~~~--------------~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~ 229 (699)
T 4gl2_A 164 QKLKNNRLKK--------------ENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK 229 (699)
T ss_dssp HHHHHHHHHC------------------CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHH
T ss_pred hhhccccccc--------------ccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHh
Confidence 121111000 00011245799999999875 2334455555 2221111
Q ss_pred --ccccceEEEEeccccccchhhHHHHH----------------------------------------------------
Q 000107 729 --RPVPLEEYIKVGNAIYSKKMDVVRTI---------------------------------------------------- 754 (2191)
Q Consensus 729 --RpvpL~e~i~~~~~~~~~~~~~~r~l---------------------------------------------------- 754 (2191)
.+.|...+..+...........+..+
T Consensus 230 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (699)
T 4gl2_A 230 NQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNE 309 (699)
T ss_dssp HHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHH
T ss_pred hhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 12222222222111000000000000
Q ss_pred ------------------------------------------------------------HHhh---ccCCCChhHHHHH
Q 000107 755 ------------------------------------------------------------LTAA---NLGGKDPDHIVEL 771 (2191)
Q Consensus 755 ------------------------------------------------------------~~~~---~~~~~d~d~l~~L 771 (2191)
.... .........+..+
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~ 389 (699)
T 4gl2_A 310 ALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNT 389 (699)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 0000 0011223344455
Q ss_pred HHHHHhc---CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEE
Q 000107 772 CDEVVQE---GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAY 848 (2191)
Q Consensus 772 l~e~~~~---g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~ 848 (2191)
+.+.... ++++||||++++.++.++..|.... ... ..+..+.+
T Consensus 390 L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---~l~-------------------------------~~g~~~~~ 435 (699)
T 4gl2_A 390 IMEQYTRTEESARGIIFTKTRQSAYALSQWITENE---KFA-------------------------------EVGVKAHH 435 (699)
T ss_dssp HHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSC---SCC------------------------------------CEE
T ss_pred HHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCc---ccc-------------------------------ccCcceEE
Confidence 5554432 6899999999999999998885420 000 01223778
Q ss_pred EcCC--------CCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCC
Q 000107 849 HHAG--------LTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 849 hHag--------Ls~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
+||+ |+..+|..+++.|++|.++|||||+++++|||+|++++||+++.+. +..+|.||+|||||.|
T Consensus 436 lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~----s~~~~~Qr~GRArr~g-- 509 (699)
T 4gl2_A 436 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT----NEIAMVQARGRARADE-- 509 (699)
T ss_dssp CCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCC----CHHHHHHHHTTSCSSS--
T ss_pred EECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCC----CHHHHHHHcCCCCCCC--
Confidence 9999 9999999999999999999999999999999999999999887765 8899999999988766
Q ss_pred CceEEEEEeC
Q 000107 921 TKGESMLICK 930 (2191)
Q Consensus 921 ~~Ge~ill~~ 930 (2191)
+.+++++.
T Consensus 510 --~~~~l~~~ 517 (699)
T 4gl2_A 510 --STYVLVAH 517 (699)
T ss_dssp --CEEEEEEE
T ss_pred --ceEEEEEe
Confidence 44455544
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=368.67 Aligned_cols=355 Identities=18% Similarity=0.239 Sum_probs=204.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.|+.+|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|++..|++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~--il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH--HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4677999999999987 88999999999999999999999998876653 67899999999999999999999998
Q ss_pred ccCCeEEEEeccCCCCCC----CCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 596 PLGRHVRSYYGNQGGGSL----PKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~~~l----~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
..++++..++|+...... ..+++|+|+||+++..++.+ ... .+.++++|||||+|++...+ . +..++.++
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~ 396 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRY 396 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--c-HHHHHHHH
Confidence 889999999998743221 13579999999998887764 333 57889999999999998753 2 44444444
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--C----------HHHHHHHhhccccccc---------cc
Q 000107 671 RYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--N----------VAAVADWLQAALYETN---------FR 729 (2191)
Q Consensus 671 r~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N----------~~~la~wL~a~l~~~~---------~R 729 (2191)
...... ...+..|+++||||+. + +..+...|+...+... +-
T Consensus 397 ~~~~~~------------------~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~ 458 (936)
T 4a2w_A 397 LEQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM 458 (936)
T ss_dssp HHHHHT------------------TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHS
T ss_pred HHHhhc------------------cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhc
Confidence 322111 0135689999999984 2 2334445554322110 11
Q ss_pred cccceEEEEeccccccchh-------------------------------------------------------------
Q 000107 730 PVPLEEYIKVGNAIYSKKM------------------------------------------------------------- 748 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~------------------------------------------------------------- 748 (2191)
+.|...+..+.........
T Consensus 459 ~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~ 538 (936)
T 4a2w_A 459 NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538 (936)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHH
T ss_pred cCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 1222222222110000000
Q ss_pred --------hH----------------------HHHHH---------------------------Hhhcc---CCCChhHH
Q 000107 749 --------DV----------------------VRTIL---------------------------TAANL---GGKDPDHI 768 (2191)
Q Consensus 749 --------~~----------------------~r~l~---------------------------~~~~~---~~~d~d~l 768 (2191)
.. +..+. ..... .......+
T Consensus 539 ~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L 618 (936)
T 4a2w_A 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEEL 618 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 00 00000 00000 01112223
Q ss_pred HHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 769 VELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 769 ~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
..++.+.. ..+.++||||++++.++.++..|.+.....+.. ...+.+.++
T Consensus 619 ~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik----------------------------~~~l~G~~~ 670 (936)
T 4a2w_A 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK----------------------------PGVLMGRGR 670 (936)
T ss_dssp HHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCC----------------------------CEEC-----
T ss_pred HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccc----------------------------eeEEecCCC
Confidence 33333332 245899999999999999998886521000000 011234557
Q ss_pred EEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEE
Q 000107 847 AYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
..+||+|+..+|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|+||+|| ||.. .|.+
T Consensus 671 ~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~----s~~~~iQr~GR-GR~~---~g~v 742 (936)
T 4a2w_A 671 RDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKC 742 (936)
T ss_dssp -----------------------CCSEEEEECC------CCCCSEEEEESCCS----CSHHHHCC-----------CCCE
T ss_pred cccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CCEE
Confidence 778999999999999999999 9999999999999999999999999887765 88999999999 9985 8999
Q ss_pred EEEeChhhHH
Q 000107 926 MLICKPEEVK 935 (2191)
Q Consensus 926 ill~~~~e~~ 935 (2191)
|+++...+..
T Consensus 743 i~Li~~~t~e 752 (936)
T 4a2w_A 743 ILVTSKTEVV 752 (936)
T ss_dssp EEEESCHHHH
T ss_pred EEEEeCCCHH
Confidence 9999876543
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=369.35 Aligned_cols=327 Identities=19% Similarity=0.231 Sum_probs=230.5
Q ss_pred HHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 512 EICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 512 ~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+.+.+.. .|| +|+|+|.++++. ++.|+|++++||||||||++|+++++..+ ..++++|||+|+++||.|+++.+
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~--il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKR--IVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHH--HTTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHH--HHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHH
Confidence 34445543 788 699999999987 89999999999999999998877777655 57889999999999999999999
Q ss_pred HHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc----
Q 000107 591 EVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN---- 658 (2191)
Q Consensus 591 ~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~---- 658 (2191)
+.+. ..++++..++|+..... + ...++|+|+||+++..++.. ..+.++++|||||+|++.+.+
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccch
Confidence 9865 77889999999875411 1 22489999999998777664 346789999999999887643
Q ss_pred -------hhHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-CC-H--HHHHHHhhcccccc
Q 000107 659 -------RGYL-LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-PN-V--AAVADWLQAALYET 726 (2191)
Q Consensus 659 -------RG~~-lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~N-~--~~la~wL~a~l~~~ 726 (2191)
+... ++.++..+..- .. -.........|+++||||+ +. . ..+..++...+...
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~-~~--------------~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~ 281 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQG-KI--------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL 281 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT-SC--------------CCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC
T ss_pred hhhHhcCCCHHHHHHHHHhcccc-hh--------------hhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC
Confidence 2223 45555554310 00 0000012568999999994 43 1 22334443222111
Q ss_pred ccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 727 NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 727 ~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
...+-.+...+.. ......+..++.. .++++||||++++.|+.++..|...
T Consensus 282 ~~~~~~i~~~~~~----------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~---- 332 (1104)
T 4ddu_A 282 VSVARNITHVRIS----------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF---- 332 (1104)
T ss_dssp CCCCCCEEEEEES----------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT----
T ss_pred CCCcCCceeEEEe----------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC----
Confidence 1111112222110 1123344555544 3589999999999999998887541
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE-EEcCCCCHHHHHHHHHHhhcCCceEEEe----cccccc
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA-YHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLAA 881 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa-~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa~ 881 (2191)
...+. .+|| +|+. ++.|++|.++|||| |+++++
T Consensus 333 ------------------------------------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvlar 370 (1104)
T 4ddu_A 333 ------------------------------------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTR 370 (1104)
T ss_dssp ------------------------------------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCC
T ss_pred ------------------------------------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEe
Confidence 12266 7888 2555 99999999999999 999999
Q ss_pred cCCCCC-ceEEeecCCCCC-------------------------------------------------------------
Q 000107 882 GVNLPA-RRVIFRQPRIGR------------------------------------------------------------- 899 (2191)
Q Consensus 882 GVNLPa-v~VVI~~p~~g~------------------------------------------------------------- 899 (2191)
|||+|+ +++||+++.+..
T Consensus 371 GIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~ 450 (1104)
T 4ddu_A 371 GVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVV 450 (1104)
T ss_dssp SCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEE
T ss_pred cCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEe
Confidence 999999 999999877650
Q ss_pred ---c----ccCcccccccccccCCC--CCCCceEEEEEeChhh
Q 000107 900 ---D----FIDGTRYRQMAGRAGRT--GIDTKGESMLICKPEE 933 (2191)
Q Consensus 900 ---~----~is~~~y~QmiGRAGR~--G~d~~Ge~ill~~~~e 933 (2191)
. ..+..+|+||+|||||. |..+.|.+++++++..
T Consensus 451 ~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~ 493 (1104)
T 4ddu_A 451 KDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 493 (1104)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHH
T ss_pred cCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHH
Confidence 0 01667899999999995 4345899999996643
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=344.69 Aligned_cols=292 Identities=16% Similarity=0.138 Sum_probs=202.5
Q ss_pred CCCCCCHHHHHhhhhcccccCCeE-EEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNL-VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknl-Ii~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
|+.+++|+|+ +++. ++.++++ +++||||||||++|.++++..+...+.++||++|+++||.|+++.+. |.
T Consensus 1 G~~q~~~iq~-~i~~--~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDED--IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGG--GGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHH--HHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6789999985 7875 7776555 99999999999999999998888888999999999999999998764 44
Q ss_pred eEEEEeccCCC-CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 600 HVRSYYGNQGG-GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 600 ~V~~~~G~~~~-~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
.+.. ..... .....+..|.++|++.+...+ .....+.++++|||||+|++ +..+...++.+..+..
T Consensus 72 ~v~~--~~~~~~~~~~~~~~i~~~t~~~l~~~l---~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~------- 138 (451)
T 2jlq_A 72 PIRY--QTPAVKSDHTGREIVDLMCHATFTTRL---LSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE------- 138 (451)
T ss_dssp CEEE--CCTTCSCCCCSSCCEEEEEHHHHHHHH---HHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH-------
T ss_pred eeee--eeccccccCCCCceEEEEChHHHHHHh---hCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc-------
Confidence 4432 22111 123445689999999865444 35567899999999999987 4334444444433221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhh
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~ 758 (2191)
.+++|+|+||||+++ .+..++. ...+. +...........
T Consensus 139 ------------------~~~~~~i~~SAT~~~--~~~~~~~--------~~~~~---~~~~~~~p~~~~---------- 177 (451)
T 2jlq_A 139 ------------------MGEAAAIFMTATPPG--STDPFPQ--------SNSPI---EDIEREIPERSW---------- 177 (451)
T ss_dssp ------------------TTSCEEEEECSSCTT--CCCSSCC--------CSSCE---EEEECCCCSSCC----------
T ss_pred ------------------CCCceEEEEccCCCc--cchhhhc--------CCCce---EecCccCCchhh----------
Confidence 246899999999864 1111110 00010 110000000000
Q ss_pred ccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhh
Q 000107 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVL 838 (2191)
Q Consensus 759 ~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L 838 (2191)
..+...+ ...++++||||+|++.|+.++..|.+.
T Consensus 178 -------~~~~~~l---~~~~~~~lVF~~s~~~a~~l~~~L~~~------------------------------------ 211 (451)
T 2jlq_A 178 -------NTGFDWI---TDYQGKTVWFVPSIKAGNDIANCLRKS------------------------------------ 211 (451)
T ss_dssp -------SSSCHHH---HHCCSCEEEECSSHHHHHHHHHHHHTT------------------------------------
T ss_pred -------HHHHHHH---HhCCCCEEEEcCCHHHHHHHHHHHHHc------------------------------------
Confidence 0011111 234679999999999999888877431
Q ss_pred hhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC--------CCCC--------ccc
Q 000107 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP--------RIGR--------DFI 902 (2191)
Q Consensus 839 ~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p--------~~g~--------~~i 902 (2191)
...+..+|+.+ +..+++.|++|.++|||||+++++|||+|+ ++||+++ ..+. .+.
T Consensus 212 ----g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~ 282 (451)
T 2jlq_A 212 ----GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV 282 (451)
T ss_dssp ----TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ----CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccC
Confidence 12377889875 467899999999999999999999999999 8888765 1111 456
Q ss_pred CcccccccccccCCCCCCCceEEEEEeCh
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
+..+|+||+|||||.|. ..|.|++++..
T Consensus 283 s~~~y~Qr~GRaGR~g~-~~g~~~~~~~~ 310 (451)
T 2jlq_A 283 TPASAAQRRGRIGRNPA-QEDDQYVFSGD 310 (451)
T ss_dssp CHHHHHHHHTTSSCCTT-CCCEEEEECSC
T ss_pred CHHHHHHhccccCCCCC-CCccEEEEeCC
Confidence 88899999999999993 27889888753
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=360.38 Aligned_cols=321 Identities=17% Similarity=0.219 Sum_probs=223.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
..+.+.+...|| +|+++|.++++. ++.+ .|++++||||||||++|.++++..+. .|.+++|++|+++||.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~--I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-~g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQE--IRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-AGFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHH--HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-HTSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHH--HHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHH
Confidence 345556678999 999999999986 6544 69999999999999999999998765 5789999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
|+++.+.+++..+|++|..++|+..... ....++|+|+||+.+. ....+.++++|||||+|+++.
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-------EDVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-------HCCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------hhhhccCCceEEecccchhhH
Confidence 9999999999989999999999865321 1235899999998652 245688999999999999754
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccc--cccccc---c
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALY--ETNFRP---V 731 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~--~~~~Rp---v 731 (2191)
..+. .+ ......+++++||||+. +..++..+-..+- .....| .
T Consensus 505 ~qr~--------~l-----------------------~~~~~~~~vL~mSATp~-p~tl~~~~~g~~~~s~i~~~p~~r~ 552 (780)
T 1gm5_A 505 KQRE--------AL-----------------------MNKGKMVDTLVMSATPI-PRSMALAFYGDLDVTVIDEMPPGRK 552 (780)
T ss_dssp ---C--------CC-----------------------CSSSSCCCEEEEESSCC-CHHHHHHHTCCSSCEEECCCCSSCC
T ss_pred HHHH--------HH-----------------------HHhCCCCCEEEEeCCCC-HHHHHHHHhCCcceeeeeccCCCCc
Confidence 3221 00 00124679999999953 3444433221110 000000 0
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
|+..++ ......+.+...+.+.+..+++++|||++...++.+...
T Consensus 553 ~i~~~~----------------------~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~------------- 597 (780)
T 1gm5_A 553 EVQTML----------------------VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK------------- 597 (780)
T ss_dssp CCEECC----------------------CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------C-------------
T ss_pred ceEEEE----------------------eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH-------------
Confidence 111100 011223445566666667789999999987765432100
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhc-CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETL-PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l-~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V 890 (2191)
......+.|... .+ ..+|+.+||+|++++|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 598 -------~a~~l~~~L~~~----------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 598 -------SAVEMYEYLSKE----------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp -------HHHHHHHSGGGS----------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred -------HHHHHHHHHHhh----------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 001111111110 11 245889999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 891 VI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
||.+..+ ..+...|.||+||+||.| ..|.||+++++
T Consensus 661 VIi~d~~---r~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 661 MVIENPE---RFGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp EEBCSCS---SSCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred EEEeCCC---CCCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 8865432 235678899999999998 78999999974
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=369.79 Aligned_cols=286 Identities=16% Similarity=0.170 Sum_probs=203.9
Q ss_pred HHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 512 EICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 512 ~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+.+.+.+ .||. | ++|.++++. ++.|+|++++||||||||+ |.++++..+...++++|||+|+++||.|+++.+
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~--il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKR--ILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHH--HHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHH--HHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHH
Confidence 34455544 8999 9 999999987 8999999999999999998 888888888888899999999999999999999
Q ss_pred HHHhhccCC----eEEEEeccCCCCC-------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 591 EVLLEPLGR----HVRSYYGNQGGGS-------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 591 ~~l~~~lg~----~V~~~~G~~~~~~-------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.++..+++ ++..++|+..... +.. ++|+|+||+++..++.+ ++++++|||||+|++.+ +
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT--S
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh--c
Confidence 999988888 8999999765421 223 89999999997765543 67899999999999998 5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccc--c---cccccccce
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALY--E---TNFRPVPLE 734 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~--~---~~~RpvpL~ 734 (2191)
|..++.++.++.+.... .........|++++|||+++...+..++..... . .....-.+.
T Consensus 191 ~~~~~~i~~~lgf~~~~---------------~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~ 255 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDL---------------KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVE 255 (1054)
T ss_dssp THHHHHHHHHTTEEEET---------------TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEE
T ss_pred cccHHHHHHHhCcchhh---------------hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCce
Confidence 78888888776432110 000113457899999998864323322221111 1 111111111
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
..+. . ......+..++.. .++++||||+|++.|+.++..|...
T Consensus 256 ~~~~-~---------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~------------ 298 (1054)
T 1gku_B 256 DVAV-N---------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------------ 298 (1054)
T ss_dssp EEEE-S---------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------------
T ss_pred EEEe-c---------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc------------
Confidence 1111 0 1122233333322 2678999999999998887665320
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe----cccccccCCCCCc-e
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLAAGVNLPAR-R 889 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa~GVNLPav-~ 889 (2191)
..+.++||++ ..+++.|++|.++|||| |+++++|||+|++ +
T Consensus 299 -----------------------------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 299 -----------------------------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp -----------------------------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred -----------------------------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 2388999998 47889999999999999 9999999999995 9
Q ss_pred EEeecCCC
Q 000107 890 VIFRQPRI 897 (2191)
Q Consensus 890 VVI~~p~~ 897 (2191)
+||+++.+
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99887665
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=351.20 Aligned_cols=313 Identities=14% Similarity=0.239 Sum_probs=228.1
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHhhhhccccc----CC--eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHH
Q 000107 511 SEICSIY-KKRGISKLYPWQVECLHVDGVLQ----RR--NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583 (2191)
Q Consensus 511 ~~l~~~l-~~~Gi~~l~p~Q~eal~~~~il~----gk--nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA 583 (2191)
....+.+ ...||+ ++|+|.+|++. ++. ++ ++++++|||+|||++|.++++..+ ..+++++|++||++||
T Consensus 590 ~~~~~~~~~~f~~~-~t~~Q~~ai~~--il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La 665 (1151)
T 2eyq_A 590 REQYQLFCDSFPFE-TTPDQAQAINA--VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLA 665 (1151)
T ss_dssp HHHHHHHHHTCCSC-CCHHHHHHHHH--HHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHH
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHH--HHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHH
Confidence 3444444 447885 79999999986 554 55 999999999999999998887754 4688999999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+++.+.+++..++++|..+.|..+... + ....+|+|+||+.+ . ....+.++++|||||+|+++
T Consensus 666 ~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~---~~~~~~~l~lvIiDEaH~~g 738 (1151)
T 2eyq_A 666 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q---SDVKFKDLGLLIVDEEHRFG 738 (1151)
T ss_dssp HHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H---SCCCCSSEEEEEEESGGGSC
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h---CCccccccceEEEechHhcC
Confidence 99999999998888889988877543211 1 23589999999753 2 34568899999999999954
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc----cc-cccccc
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA----LY-ETNFRP 730 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~----l~-~~~~Rp 730 (2191)
.....++..++ .+.++++||||+.. ..+...+... .+ ......
T Consensus 739 -----~~~~~~l~~l~--------------------------~~~~vl~lSATp~p-~~l~~~~~~~~~~~~i~~~~~~r 786 (1151)
T 2eyq_A 739 -----VRHKERIKAMR--------------------------ANVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARR 786 (1151)
T ss_dssp -----HHHHHHHHHHH--------------------------TTSEEEEEESSCCC-HHHHHHHTTTSEEEECCCCCCBC
T ss_pred -----hHHHHHHHHhc--------------------------CCCCEEEEcCCCCh-hhHHHHHhcCCCceEEecCCCCc
Confidence 33334444431 35799999999642 3333333211 01 111111
Q ss_pred ccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccccc
Q 000107 731 VPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINV 810 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~ 810 (2191)
.++..++.. .+...+...+...+..+++++|||++++.++.++..|.+.++
T Consensus 787 ~~i~~~~~~-----------------------~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p------ 837 (1151)
T 2eyq_A 787 LAVKTFVRE-----------------------YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP------ 837 (1151)
T ss_dssp BCEEEEEEE-----------------------CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT------
T ss_pred cccEEEEec-----------------------CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC------
Confidence 222222211 011122233333445688999999999999999988866431
Q ss_pred CCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE
Q 000107 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890 (2191)
Q Consensus 811 ~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V 890 (2191)
..+|+.+||+|+..+|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 838 --------------------------------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 838 --------------------------------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp --------------------------------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred --------------------------------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 124899999999999999999999999999999999999999999988
Q ss_pred EeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 891 VI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
||.... +.++..+|.||+||+||.| ..|.||+++.+.
T Consensus 886 VIi~~~---~~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 886 IIIERA---DHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp EEETTT---TSSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred EEEeCC---CCCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 774321 2246778999999999998 789999998764
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=342.54 Aligned_cols=292 Identities=16% Similarity=0.123 Sum_probs=209.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
...++|+|..+++. ++.++++|++||||||||++|.+++++.+...+.++||++|+++||.|+++.+. +..+
T Consensus 169 ~~~~lpiq~~~i~~--l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v 240 (618)
T 2whx_A 169 ERIGEPDYEVDEDI--FRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPI 240 (618)
T ss_dssp CCCCCCCCCCCGGG--GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCE
T ss_pred cccCCCccccCHHH--HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCce
Confidence 36778888777765 899999999999999999999999999988888899999999999999997765 3444
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
. +.+.........+..+.++|.+.+.. .+.....+.++++|||||+|++ +.++...+..++..+..
T Consensus 241 ~-~~~~~l~~~~tp~~~i~~~t~~~l~~---~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~--------- 306 (618)
T 2whx_A 241 R-YQTPAVKSDHTGREIVDLMCHATFTT---RLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM--------- 306 (618)
T ss_dssp E-ECCTTSSCCCCSSSCEEEEEHHHHHH---HHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH---------
T ss_pred e-EecccceeccCCCceEEEEChHHHHH---HHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc---------
Confidence 4 22222111233456788889887544 3445567899999999999998 55566677777766521
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccC
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLG 761 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~ 761 (2191)
++.|+|+||||+++. +.. +...+.+.++ +.. . +..
T Consensus 307 ----------------~~~q~il~SAT~~~~--~~~-----~~~~~~~~~~----v~~--~-~~~--------------- 341 (618)
T 2whx_A 307 ----------------GEAAAIFMTATPPGS--TDP-----FPQSNSPIED----IER--E-IPE--------------- 341 (618)
T ss_dssp ----------------TSCEEEEECSSCTTC--CCS-----SCCCSSCEEE----EEC--C-CCS---------------
T ss_pred ----------------cCccEEEEECCCchh--hhh-----hhccCCceee----ecc--c-CCH---------------
Confidence 468999999998742 111 1111111111 110 0 000
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhh
Q 000107 762 GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEET 841 (2191)
Q Consensus 762 ~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~ 841 (2191)
.....+... +...++++||||+|++.|+.++..|.+.
T Consensus 342 -~~~~~ll~~---l~~~~~~~LVF~~s~~~a~~l~~~L~~~--------------------------------------- 378 (618)
T 2whx_A 342 -RSWNTGFDW---ITDYQGKTVWFVPSIKAGNDIANCLRKS--------------------------------------- 378 (618)
T ss_dssp -SCCSSSCHH---HHHCCSCEEEECSSHHHHHHHHHHHHHT---------------------------------------
T ss_pred -HHHHHHHHH---HHhCCCCEEEEECChhHHHHHHHHHHHc---------------------------------------
Confidence 000111122 2234679999999999999999888542
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC----------------CCcccCcc
Q 000107 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI----------------GRDFIDGT 905 (2191)
Q Consensus 842 l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~----------------g~~~is~~ 905 (2191)
...+..+|+. +|..+++.|++|.++|||||+++++|||+| +++||++... ...+.+..
T Consensus 379 -g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~ 452 (618)
T 2whx_A 379 -GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 452 (618)
T ss_dssp -TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred -CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHH
Confidence 1127889984 788899999999999999999999999998 7777664330 01246888
Q ss_pred cccccccccCCCCCCCceEEEEEeC
Q 000107 906 RYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
+|+||+|||||.|. ..|.||+++.
T Consensus 453 ~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 453 SAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp HHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred HHHHhccccCCCCC-CCCeEEEEcc
Confidence 99999999999972 4899999997
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=336.57 Aligned_cols=296 Identities=22% Similarity=0.274 Sum_probs=218.5
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC--C
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP--K 615 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~--~ 615 (2191)
.+++++++++||||||||+.++.. +... +..+|++|+|+||.|+++++.++ |+.+..++|+...-... .
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~----l~~~-~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQK----YFSA-KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHH----HHHS-SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCSTTCC
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHH----HHhc-CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEecCCCc
Confidence 468899999999999999944433 3333 45699999999999999998764 78888888875431111 2
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~ 695 (2191)
..+++++|++.+. ....+++|||||+|++++.+||..++.++..++
T Consensus 223 ~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------------------------ 268 (677)
T 3rc3_A 223 QASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------------------------ 268 (677)
T ss_dssp CCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------------------------
T ss_pred ccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------------------------
Confidence 3789999998642 356789999999999999999999988877662
Q ss_pred CCCCceEEEEeccCCCHHHHHHHhhcccc-ccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH
Q 000107 696 PAHGLQIVGMSATMPNVAAVADWLQAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE 774 (2191)
Q Consensus 696 ~~~~iqII~mSATL~N~~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e 774 (2191)
...+|++++|||.+....+..+.+..+. ....|+.++... .... ..+
T Consensus 269 -~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~----~~~l---------------------~~l------ 316 (677)
T 3rc3_A 269 -AEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVL----DHAL---------------------ESL------ 316 (677)
T ss_dssp -EEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEEC----SSCC---------------------CSG------
T ss_pred -ccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHH----HHHH---------------------HHH------
Confidence 2568999999998777777766654321 222233332210 0000 000
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.......+|||+|++.|+.++..|.+. ..+|++|||+|+
T Consensus 317 -~~~~~g~iIf~~s~~~ie~la~~L~~~----------------------------------------g~~v~~lHG~L~ 355 (677)
T 3rc3_A 317 -DNLRPGDCIVCFSKNDIYSVSRQIEIR----------------------------------------GLESAVIYGSLP 355 (677)
T ss_dssp -GGCCTTEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCCEEECTTSC
T ss_pred -HhcCCCCEEEEcCHHHHHHHHHHHHhc----------------------------------------CCCeeeeeccCC
Confidence 011345589999999999888887541 235899999999
Q ss_pred HHHHHHHHHHhhc--CCceEEEecccccccCCCCCceEEeecCCC-------C---CcccCcccccccccccCCCCCC-C
Q 000107 855 VEEREVVETCYRK--GLVRVLTATSTLAAGVNLPARRVIFRQPRI-------G---RDFIDGTRYRQMAGRAGRTGID-T 921 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~--G~ikVLVATstLa~GVNLPav~VVI~~p~~-------g---~~~is~~~y~QmiGRAGR~G~d-~ 921 (2191)
+++|..+++.|++ |.++|||||+++++|||+ .+++||++... | ..+++..+|+||+|||||.|.+ .
T Consensus 356 ~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~ 434 (677)
T 3rc3_A 356 PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK 434 (677)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCS
T ss_pred HHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999 999999999999999999 67777765542 1 1278899999999999999965 4
Q ss_pred ceEEEEEeChhhHHHHHhhhccCCCCcccc
Q 000107 922 KGESMLICKPEEVKKIMGLLNESCPPLHSC 951 (2191)
Q Consensus 922 ~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~ 951 (2191)
.|.|++++.. +...+.+++....+++.+.
T Consensus 435 ~G~v~~l~~~-d~~~~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 435 EGEVTTMNHE-DLSLLKEILKRPVDPIRAA 463 (677)
T ss_dssp SEEEEESSTT-HHHHHHHHHHSCCCCCCCE
T ss_pred CEEEEEEecc-hHHHHHHHHhcCcchhhhc
Confidence 6888887755 4456677888888887764
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-30 Score=332.16 Aligned_cols=323 Identities=15% Similarity=0.175 Sum_probs=215.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
.+|+|+|.++++. ++.++++++++|||+|||++|.+++...+...++++|||+|+++|+.|+++++.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~--~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFE--GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHH--HHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHH--HHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 4899999999987 78889999999999999999998888777655569999999999999999999887544456788
Q ss_pred EEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 603 SYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 603 ~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
.++|+.... ......+|+|+||+.+ ++. ....+.++++|||||+|.+.. ..++.++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~--~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~----------- 249 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGL----------- 249 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHH---TTS--CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC-----------
T ss_pred EEecCCccccccccCCcEEEEeHHHH---hhc--hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc-----------
Confidence 777775432 1235689999999964 222 224578899999999999865 2233332222
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCH----HHHHHHhhccccccccc-------cccceEE---EEeccccccc-
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNV----AAVADWLQAALYETNFR-------PVPLEEY---IKVGNAIYSK- 746 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~----~~la~wL~a~l~~~~~R-------pvpL~e~---i~~~~~~~~~- 746 (2191)
....++++||||+++. ..+..+++...+..... ..+.... +.........
T Consensus 250 ---------------~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 314 (510)
T 2oca_A 250 ---------------NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKL 314 (510)
T ss_dssp ---------------TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHH
T ss_pred ---------------ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccc
Confidence 2456999999998642 23344454433221111 0011100 0000000000
Q ss_pred h-hhHHHHHHHhhccCCCChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHH
Q 000107 747 K-MDVVRTILTAANLGGKDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAI 824 (2191)
Q Consensus 747 ~-~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 824 (2191)
. ......+..... .......+..++......+ .++||||+ .+.|+.++..|.+. +
T Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----~----------------- 371 (510)
T 2oca_A 315 KGKTYQEEIKIITG-LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----Y----------------- 371 (510)
T ss_dssp TTCCHHHHHHHHHT-CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----C-----------------
T ss_pred cccchHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----C-----------------
Confidence 0 000000111000 0112233455555555444 45566666 77777666555321 0
Q ss_pred HHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEec-ccccccCCCCCceEEeecCCCCCcccC
Q 000107 825 DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT-STLAAGVNLPARRVIFRQPRIGRDFID 903 (2191)
Q Consensus 825 ~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT-stLa~GVNLPav~VVI~~p~~g~~~is 903 (2191)
..|.++||+++..+|..+++.|++|.++||||| +++++|||+|++++||....+ .+
T Consensus 372 -------------------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~----~s 428 (510)
T 2oca_A 372 -------------------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV----KS 428 (510)
T ss_dssp -------------------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC----CS
T ss_pred -------------------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC----CC
Confidence 138899999999999999999999999999999 999999999999999876554 37
Q ss_pred cccccccccccCCCCCCCceEEEEEeC
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
...|.||+||+||.| ..|.++++++
T Consensus 429 ~~~~~Q~~GR~gR~g--~~~~~v~i~~ 453 (510)
T 2oca_A 429 KIIVLQTIGRVLRKH--GSKTIATVWD 453 (510)
T ss_dssp CCHHHHHHHHHHTTT--CCCCCCEEEE
T ss_pred HHHHHHHHhcccccC--CCCceEEEEE
Confidence 889999999999999 3443444443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-30 Score=337.05 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=231.0
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..|| +|||+|..+++. ++.|+ |..++||+|||++|.+|++...+ .|+.++||+|+++||.|.++++..++..+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~--ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVA--LHDGN--IAEMKTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHH--HHTTS--EEECCTTSCHHHHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHH--HhCCC--EEEccCCcHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5899 999999999987 88888 99999999999999999985544 477899999999999999999999999999
Q ss_pred CeEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccchh----------
Q 000107 599 RHVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNRG---------- 660 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~RG---------- 660 (2191)
++|..++|+..... ...+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |..|.
T Consensus 153 l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~ 232 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAK 232 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCccc
Confidence 99999998754211 112479999999998 66665433 23457889999999999987 65443
Q ss_pred -----HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE-----------------EEeccCCC-HHHHHH
Q 000107 661 -----YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV-----------------GMSATMPN-VAAVAD 717 (2191)
Q Consensus 661 -----~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII-----------------~mSATL~N-~~~la~ 717 (2191)
..+..++..+. . + .++. ......|+. ++|||++. ...+..
T Consensus 233 ~~~~~~~i~~iv~~l~----~---~-~~y~---------vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~ 295 (844)
T 1tf5_A 233 STKLYVQANAFVRTLK----A---E-KDYT---------YDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQ 295 (844)
T ss_dssp CCHHHHHHHHHHTTCC----S---S-SSBC---------CCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCc----c---c-ccce---------eccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHH
Confidence 22333332221 0 0 0000 011344555 78898642 223322
Q ss_pred Hhhcc-ccccc-----------------ccc-------------------ccceE-EE---Eeccc----ccc-------
Q 000107 718 WLQAA-LYETN-----------------FRP-------------------VPLEE-YI---KVGNA----IYS------- 745 (2191)
Q Consensus 718 wL~a~-l~~~~-----------------~Rp-------------------vpL~e-~i---~~~~~----~~~------- 745 (2191)
.|.+. ++..+ .|. +.+.. .. .+... .|.
T Consensus 296 al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTG 375 (844)
T 1tf5_A 296 ALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTG 375 (844)
T ss_dssp HHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEES
T ss_pred HHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCc
Confidence 22221 11100 000 00000 00 00000 000
Q ss_pred ---chhhHHHHHHHh------hcc-----------CCC---ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHH
Q 000107 746 ---KKMDVVRTILTA------ANL-----------GGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802 (2191)
Q Consensus 746 ---~~~~~~r~l~~~------~~~-----------~~~---d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~ 802 (2191)
........++.. ... -.. +...+..++.+....+.++||||+|+..|+.++..|.+.
T Consensus 376 Ta~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 376 TAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp CCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC
Confidence 000111111100 000 001 122344445444456789999999999999988877531
Q ss_pred HhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 000107 803 LKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG 882 (2191)
Q Consensus 803 l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~G 882 (2191)
+ ..+..+||++...+|..+.++|+.| .|+|||++++||
T Consensus 456 ----g------------------------------------i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG 493 (844)
T 1tf5_A 456 ----G------------------------------------IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRG 493 (844)
T ss_dssp ----T------------------------------------CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTT
T ss_pred ----C------------------------------------CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccC
Confidence 1 1256699999999999888888877 699999999999
Q ss_pred CCCC--------CceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 883 VNLP--------ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 883 VNLP--------av~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
+||+ +..+||++..+. +...|.||+||+||.| .+|.++.|++.++
T Consensus 494 ~DI~l~~~V~~~ggl~VIn~d~p~----s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 494 TDIKLGEGVKELGGLAVVGTERHE----SRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp CCCCCCTTSGGGTSEEEEESSCCS----SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred cCccccchhhhcCCcEEEEecCCC----CHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 9999 788999988876 8889999999999999 8999999987644
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=322.80 Aligned_cols=306 Identities=17% Similarity=0.230 Sum_probs=210.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe-EE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH-VR 602 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~-V~ 602 (2191)
+|+|+|.++++. ++.++++++++|||+|||++|..++... ++++|||+|+++|+.|+++++.+ +|.. |.
T Consensus 93 ~l~~~Q~~ai~~--i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALER--WLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI----FGEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHH--HTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG----GCGGGEE
T ss_pred CcCHHHHHHHHH--HHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh----CCCcceE
Confidence 799999999986 8888899999999999999998887753 78999999999999999988876 3777 88
Q ss_pred EEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCC
Q 000107 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682 (2191)
Q Consensus 603 ~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~ 682 (2191)
.++|+.. ...+|+|+||+.+...+..+ ..++++|||||+|.+.+..+.. ++..+
T Consensus 163 ~~~g~~~-----~~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~~~~----~~~~~------------ 216 (472)
T 2fwr_A 163 EFSGRIK-----ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAESYVQ----IAQMS------------ 216 (472)
T ss_dssp EBSSSCB-----CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTTTHH----HHHTC------------
T ss_pred EECCCcC-----CcCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChHHHH----HHHhc------------
Confidence 7777543 34689999999976655432 2458999999999998765432 22111
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeccCCCH----HHHHHHhhccccccccccc------cc---eEEEEeccc---cccc
Q 000107 683 SGENSGTSSGKADPAHGLQIVGMSATMPNV----AAVADWLQAALYETNFRPV------PL---EEYIKVGNA---IYSK 746 (2191)
Q Consensus 683 ~~~~~~~~~~~~~~~~~iqII~mSATL~N~----~~la~wL~a~l~~~~~Rpv------pL---~e~i~~~~~---~~~~ 746 (2191)
...++|+||||+.+. ..+..+++...+......+ +. ...+..... .|..
T Consensus 217 ---------------~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (472)
T 2fwr_A 217 ---------------IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK 281 (472)
T ss_dssp ---------------CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTT
T ss_pred ---------------CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHH
Confidence 346899999998632 2355555544332211111 00 001110000 0000
Q ss_pred hhhHH-------------------------------------HHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCch
Q 000107 747 KMDVV-------------------------------------RTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSR 789 (2191)
Q Consensus 747 ~~~~~-------------------------------------r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr 789 (2191)
..... ................+..++.+ ..++++||||+++
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 282 REKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHN 359 (472)
T ss_dssp TTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCH
T ss_pred HHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCH
Confidence 00000 00000000001111233333333 2468999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCC
Q 000107 790 KGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869 (2191)
Q Consensus 790 ~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ 869 (2191)
+.++.++..|. +..+||+++..+|..+++.|++|.
T Consensus 360 ~~~~~l~~~l~---------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 360 ELVYRISKVFL---------------------------------------------IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHTT---------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHhC---------------------------------------------cceeeCCCCHHHHHHHHHHHhCCC
Confidence 98887765541 345899999999999999999999
Q ss_pred ceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCC-CceEEEEEeCh
Q 000107 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID-TKGESMLICKP 931 (2191)
Q Consensus 870 ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d-~~Ge~ill~~~ 931 (2191)
++|||||+++++|+|+|++++||....+. +...|.||+|||||.|.+ ....+|.++..
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~----s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSG----SAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSS----CCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCC----CHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999998765543 788999999999999954 45566666654
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=320.29 Aligned_cols=281 Identities=17% Similarity=0.155 Sum_probs=187.9
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+..++++|++||||||||++|.+++++.+...+.++||++|+++||.|+++.+. |..+....+.... ...++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-~~t~~ 89 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-EHQGN 89 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT------TSCEEECC---------CC
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc-CCCCC
Confidence 3677999999999999999999999999888888999999999999999998775 4444332222111 11234
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
..+.++|.+.+ .+++.....+.++++|||||+|++. ......+..+.....
T Consensus 90 ~~i~~~~~~~l---~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~------------------------- 140 (459)
T 2z83_A 90 EIVDVMCHATL---THRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVE------------------------- 140 (459)
T ss_dssp CSEEEEEHHHH---HHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHH-------------------------
T ss_pred cEEEEEchHHH---HHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhc-------------------------
Confidence 56788898874 4445556678999999999999852 112222222222221
Q ss_pred CCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
.++.|+|+||||++.. + ..+... ..|+.. +. ...... ....+..++.
T Consensus 141 ~~~~~~il~SAT~~~~--~------~~~~~~--~~pi~~-~~--~~~~~~-----------------~~~~~~~~l~--- 187 (459)
T 2z83_A 141 LGEAAAIFMTATPPGT--T------DPFPDS--NAPIHD-LQ--DEIPDR-----------------AWSSGYEWIT--- 187 (459)
T ss_dssp TTSCEEEEECSSCTTC--C------CSSCCC--SSCEEE-EE--CCCCSS-----------------CCSSCCHHHH---
T ss_pred cCCccEEEEEcCCCcc--h------hhhccC--CCCeEE-ec--ccCCcc-----------------hhHHHHHHHH---
Confidence 2468999999998741 0 011111 112211 11 000000 0001111222
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..++++||||+|++.|+.++..|... ...+..+|+.
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~----------------------------------------g~~v~~lh~~---- 223 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRA----------------------------------------GKKVIQLNRK---- 223 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT----------------------------------------TCCEEEESTT----
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhc----------------------------------------CCcEEecCHH----
Confidence 24689999999999999998887542 1227788984
Q ss_pred HHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC----------------CCcccCcccccccccccCCCCCC
Q 000107 857 EREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI----------------GRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~----------------g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
+|..+++.|++|.++|||||+++++|||+|+ ++||+.... ...+.+..+|+||+|||||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~- 301 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN- 301 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-
Confidence 7889999999999999999999999999999 888873300 1245688999999999999982
Q ss_pred CceEEEEEeChh
Q 000107 921 TKGESMLICKPE 932 (2191)
Q Consensus 921 ~~Ge~ill~~~~ 932 (2191)
..|.|++++.+.
T Consensus 302 ~~G~~~~~~~~~ 313 (459)
T 2z83_A 302 QVGDEYHYGGAT 313 (459)
T ss_dssp CCCEEEEECSCC
T ss_pred CCCeEEEEEccc
Confidence 289999998764
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=317.44 Aligned_cols=278 Identities=18% Similarity=0.141 Sum_probs=177.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+++|+|++++||||||||++|++++++.+...+.+++|++||++||.|+++.+.. +.+....+... ....++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~------~~v~~~~~~~~-~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG------LDVKFHTQAFS-AHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT------SCEEEESSCCC-CCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc------CCeEEecccce-eccCCc
Confidence 36789999999999999999999999998888888999999999999999987752 23332211110 001111
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
.-+-+.+.+. +..++.....+.++++|||||+|++ +..+...+..+...+.
T Consensus 77 ~l~~~l~~~~---l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~------------------------- 127 (440)
T 1yks_A 77 EVIDAMCHAT---LTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR------------------------- 127 (440)
T ss_dssp CCEEEEEHHH---HHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH-------------------------
T ss_pred cceeeecccc---hhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc-------------------------
Confidence 1222333333 2334445556899999999999998 3333333333333221
Q ss_pred CCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
..+.|+|+||||++.. +.. +.. . +.++.. +... ... .....+.. .+.
T Consensus 128 ~~~~~~l~~SAT~~~~--~~~-----~~~-~--~~~~~~-~~~~--~~~-----------------~~~~~~~~---~l~ 174 (440)
T 1yks_A 128 ANESATILMTATPPGT--SDE-----FPH-S--NGEIED-VQTD--IPS-----------------EPWNTGHD---WIL 174 (440)
T ss_dssp TTSCEEEEECSSCTTC--CCS-----SCC-C--SSCEEE-EECC--CCS-----------------SCCSSSCH---HHH
T ss_pred cCCceEEEEeCCCCch--hhh-----hhh-c--CCCeeE-eeec--cCh-----------------HHHHHHHH---HHH
Confidence 2468999999998631 000 111 1 111111 1100 000 00001111 122
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..++++||||++++.|+.++..|.+. ...|..+|| +
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~----------------------------------------~~~v~~lhg----~ 210 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA----------------------------------------GKSVVVLNR----K 210 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT----------------------------------------TCCEEECCS----S
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCCEEEecc----h
Confidence 35789999999999999998887541 123888999 5
Q ss_pred HHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC---------------CCCcccCcccccccccccCCCCCCC
Q 000107 857 EREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR---------------IGRDFIDGTRYRQMAGRAGRTGIDT 921 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~---------------~g~~~is~~~y~QmiGRAGR~G~d~ 921 (2191)
+|..+++.|++|.++|||||+++++|||+| +++||++.. ....+.+..+|.||+|||||.| ..
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~ 288 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NR 288 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CC
Confidence 789999999999999999999999999999 888886221 0122468889999999999984 26
Q ss_pred ceEEEEEe
Q 000107 922 KGESMLIC 929 (2191)
Q Consensus 922 ~Ge~ill~ 929 (2191)
.|.||+++
T Consensus 289 ~g~~~~l~ 296 (440)
T 1yks_A 289 DGDSYYYS 296 (440)
T ss_dssp CCEEEEEC
T ss_pred CceEEEEe
Confidence 89999996
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=334.51 Aligned_cols=289 Identities=16% Similarity=0.132 Sum_probs=194.2
Q ss_pred CCCHHHH-----Hhhhhcccc------cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 524 KLYPWQV-----ECLHVDGVL------QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 524 ~l~p~Q~-----eal~~~~il------~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
.|+++|. ++|+. ++ .++|+|++||||||||++|++++++.+...+.++||++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~--~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPE--AYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CC--CCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHH--HhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 8899999 89875 55 89999999999999999999999998888888999999999999999987753
Q ss_pred HhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHH
Q 000107 593 LLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRY 672 (2191)
Q Consensus 593 l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~ 672 (2191)
+ ++. ...+... ....++.-+-+++.+. +.++++....+.++++|||||+|++. ......+..+...+
T Consensus 293 ~----~i~--~~~~~l~-~v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~-- 359 (673)
T 2wv9_A 293 L----PVR--YLTPAVQ-REHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTD-PASIAARGYIATRV-- 359 (673)
T ss_dssp S----CCE--ECCC----CCCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHH--
T ss_pred C----Cee--eeccccc-ccCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccC-ccHHHHHHHHHHhc--
Confidence 2 322 1111100 0112233445555554 34455555678999999999999982 11122222222222
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHH
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVR 752 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r 752 (2191)
. ....|+|+||||++.. + .-+... ..|+..... ....
T Consensus 360 --~---------------------~~~~~vl~~SAT~~~~--i------~~~~~~--~~~i~~v~~---~~~~------- 396 (673)
T 2wv9_A 360 --E---------------------AGEAAAIFMTATPPGT--S------DPFPDT--NSPVHDVSS---EIPD------- 396 (673)
T ss_dssp --H---------------------TTSCEEEEECSSCTTC--C------CSSCCC--SSCEEEEEC---CCCS-------
T ss_pred --c---------------------ccCCcEEEEcCCCChh--h------hhhccc--CCceEEEee---ecCH-------
Confidence 1 2468999999998631 0 001111 122211110 0000
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCC
Q 000107 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA 832 (2191)
Q Consensus 753 ~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 832 (2191)
.....+. ..+...++++||||++++.|+.++..|.+.
T Consensus 397 ----------~~~~~~l---~~l~~~~~~~lVF~~s~~~~e~la~~L~~~------------------------------ 433 (673)
T 2wv9_A 397 ----------RAWSSGF---EWITDYAGKTVWFVASVKMSNEIAQCLQRA------------------------------ 433 (673)
T ss_dssp ----------SCCSSCC---HHHHSCCSCEEEECSSHHHHHHHHHHHHTT------------------------------
T ss_pred ----------HHHHHHH---HHHHhCCCCEEEEECCHHHHHHHHHHHHhC------------------------------
Confidence 0000111 122335789999999999999888777431
Q ss_pred CCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-------------C--
Q 000107 833 GLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-------------I-- 897 (2191)
Q Consensus 833 gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-------------~-- 897 (2191)
...|..+|| ++|..+++.|++|.++|||||+++++|||+| +.+||++.. +
T Consensus 434 ----------g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~l 498 (673)
T 2wv9_A 434 ----------GKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVIL 498 (673)
T ss_dssp ----------TCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEE
T ss_pred ----------CCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccccee
Confidence 123888999 3899999999999999999999999999999 888887431 1
Q ss_pred -CCcccCcccccccccccCCCCCCCceEEEEEe
Q 000107 898 -GRDFIDGTRYRQMAGRAGRTGIDTKGESMLIC 929 (2191)
Q Consensus 898 -g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~ 929 (2191)
...+.+..+|.||+|||||.| ...|.||+++
T Consensus 499 l~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 499 SVPSAITSASAAQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp CCSEECCHHHHHHHHTTSSCCS-SCCCEEEEEC
T ss_pred cccCCCCHHHHHHHhhccCCCC-CCCCEEEEEE
Confidence 123467889999999999993 2689999996
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=322.93 Aligned_cols=356 Identities=19% Similarity=0.168 Sum_probs=214.0
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
+..|. +|||+|..+++. ++.|+ |..++||+|||++|.+|++...+ .|..++|++||++||.|.++++..++..+
T Consensus 69 R~lg~-~p~~VQ~~~i~~--ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMV--LNERC--IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HHHSC-CCCHHHHHHHHH--HHSSE--EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-CCChHHHhhccc--ccCCe--eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 34675 899999999987 88887 99999999999999999986554 47789999999999999999999999999
Q ss_pred CCeEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccch----------
Q 000107 598 GRHVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNR---------- 659 (2191)
Q Consensus 598 g~~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~R---------- 659 (2191)
|++|..++|+.... ....+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |.++
T Consensus 143 gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999976421 1112479999999998 67776532 23457899999999999987 5443
Q ss_pred -----hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE------------------------EEeccCC
Q 000107 660 -----GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV------------------------GMSATMP 710 (2191)
Q Consensus 660 -----G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII------------------------~mSATL~ 710 (2191)
...+..++..+..-.. ...++.... .+.....+..|++ ++|||.+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~-----~~~~~~~~~-~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEK-----EDSETFQGE-GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhc-----ccccccccc-ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 2344555555521000 000000000 0000000112221 7899865
Q ss_pred C-HHHHHHHhhcc-cccc-----------------ccc-------------cccceEEEEecccc----------cc---
Q 000107 711 N-VAAVADWLQAA-LYET-----------------NFR-------------PVPLEEYIKVGNAI----------YS--- 745 (2191)
Q Consensus 711 N-~~~la~wL~a~-l~~~-----------------~~R-------------pvpL~e~i~~~~~~----------~~--- 745 (2191)
. ...+...|.+. +|.. ..| ++..++.+.+.... |.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 3 12221111111 0100 000 11111112111100 00
Q ss_pred -----------chhhHHHHHHHh-------------------hccC-CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHH
Q 000107 746 -----------KKMDVVRTILTA-------------------ANLG-GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCES 794 (2191)
Q Consensus 746 -----------~~~~~~r~l~~~-------------------~~~~-~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~ 794 (2191)
........++.. .... ..+...+..++.+....+.++||||+|+..++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 000111111100 0000 011223444554445567899999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEE
Q 000107 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874 (2191)
Q Consensus 795 lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLV 874 (2191)
++..|.+. ++ .+..+||++...+|.+|.++|+.| .|+|
T Consensus 457 Ls~~L~~~----gi------------------------------------~~~vLnak~~~rEa~iia~agr~G--~VtI 494 (853)
T 2fsf_A 457 VSNELTKA----GI------------------------------------KHNVLNAKFHANEAAIVAQAGYPA--AVTI 494 (853)
T ss_dssp HHHHHHHT----TC------------------------------------CCEECCTTCHHHHHHHHHTTTSTT--CEEE
T ss_pred HHHHHHHC----CC------------------------------------CEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 98887552 11 155689999999999999999999 6999
Q ss_pred ecccccccCCCCCc-------------------------------------eEEeecCCCCCcccCcccccccccccCCC
Q 000107 875 ATSTLAAGVNLPAR-------------------------------------RVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 875 ATstLa~GVNLPav-------------------------------------~VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
||++++||+||+.. .+||++.++. +...|.||+||+||.
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe----s~riy~qr~GRTGRq 570 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE----SRRIDNQLRGRSGRQ 570 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS----SHHHHHHHHTTSSGG
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC----CHHHHHhhccccccC
Confidence 99999999999973 6899988876 788899999999999
Q ss_pred CCCCceEEEEEeChhh
Q 000107 918 GIDTKGESMLICKPEE 933 (2191)
Q Consensus 918 G~d~~Ge~ill~~~~e 933 (2191)
| .+|.++.|++.++
T Consensus 571 G--d~G~s~~fls~eD 584 (853)
T 2fsf_A 571 G--DAGSSRFYLSMED 584 (853)
T ss_dssp G--CCEEEEEEEETTS
T ss_pred C--CCeeEEEEecccH
Confidence 9 8999999987654
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=323.37 Aligned_cols=282 Identities=21% Similarity=0.166 Sum_probs=193.1
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.++++|.+++.. +..+++++++||||||||+++.+++++ .+.++||++|+|+||.|+++++.+.+ +..+..
T Consensus 217 P~~~~q~~i~~~--L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAV--PQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCC--CSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHH--HHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 456667666654 778999999999999999999988876 57799999999999999998776554 556666
Q ss_pred EeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCC
Q 000107 604 YYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683 (2191)
Q Consensus 604 ~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~ 683 (2191)
.+|+.. ...+.+|+|+||+++ ++. ....++++++|||||+|++.. ++...+..++..+..
T Consensus 288 ~vG~~~---~~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~-~~~~~l~~Il~~l~~----------- 347 (666)
T 3o8b_A 288 RTGVRT---ITTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDS-TTILGIGTVLDQAET----------- 347 (666)
T ss_dssp ECSSCE---ECCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSH-HHHHHHHHHHHHTTT-----------
T ss_pred EECcEe---ccCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCc-cHHHHHHHHHHhhhh-----------
Confidence 666542 456789999999996 332 344677899999999998643 344444444444311
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCC
Q 000107 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK 763 (2191)
Q Consensus 684 ~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~ 763 (2191)
.....+++||||+++. +.. +.|....+..... ...... . .. .
T Consensus 348 -------------~~~~llil~SAT~~~~-----------i~~---~~p~i~~v~~~~~---~~i~~~----~-~~---~ 389 (666)
T 3o8b_A 348 -------------AGARLVVLATATPPGS-----------VTV---PHPNIEEVALSNT---GEIPFY----G-KA---I 389 (666)
T ss_dssp -------------TTCSEEEEEESSCTTC-----------CCC---CCTTEEEEECBSC---SSEEET----T-EE---E
T ss_pred -------------cCCceEEEECCCCCcc-----------ccc---CCcceEEEeeccc---chhHHH----H-hh---h
Confidence 1233578899999861 111 1111111111100 000000 0 00 0
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcC
Q 000107 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLP 843 (2191)
Q Consensus 764 d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~ 843 (2191)
.. ....++++||||+|++.|+.++..|.+. .
T Consensus 390 ~l---------~~~~~~~vLVFv~Tr~~ae~la~~L~~~----------------------------------------g 420 (666)
T 3o8b_A 390 PI---------EAIRGGRHLIFCHSKKKCDELAAKLSGL----------------------------------------G 420 (666)
T ss_dssp CG---------GGSSSSEEEEECSCHHHHHHHHHHHHTT----------------------------------------T
T ss_pred hh---------hhccCCcEEEEeCCHHHHHHHHHHHHhC----------------------------------------C
Confidence 00 0114689999999999999998887531 1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee----------cC---CCCC----cccCccc
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR----------QP---RIGR----DFIDGTR 906 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~----------~p---~~g~----~~is~~~ 906 (2191)
..+..+||+|++++ |+++..+|||||+++++|||+| +++||+ ++ ..+. .+.+..+
T Consensus 421 ~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~s 492 (666)
T 3o8b_A 421 INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492 (666)
T ss_dssp CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHH
T ss_pred CcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHH
Confidence 23889999999875 5566679999999999999998 888774 22 1111 3568889
Q ss_pred ccccccccCCCCCCCceEEEEEeChhh
Q 000107 907 YRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 907 y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|+||+||||| | ..|. |.|+++.+
T Consensus 493 yiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 493 RSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp HHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred HHHHhccCCC-C--CCCE-EEEEecch
Confidence 9999999999 6 6899 88887754
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=306.22 Aligned_cols=275 Identities=17% Similarity=0.140 Sum_probs=181.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
+|+++++++|||||||++|++++++.+...+.+++|++||++||.|+++.+. |+.|....|.... ...++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-ERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-cCCCCceE
Confidence 3789999999999999999999998888888999999999999999887664 4566544443221 22234567
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 699 (2191)
.++|.+.+. +.++....+.++++|||||+|+++ ......+..++.... ..+
T Consensus 74 ~~~~~~~l~---~~l~~~~~~~~l~~vViDEaH~~~-----~~~~~~~~~l~~~~~---------------------~~~ 124 (431)
T 2v6i_A 74 DFMCHSTFT---MKLLQGVRVPNYNLYIMDEAHFLD-----PASVAARGYIETRVS---------------------MGD 124 (431)
T ss_dssp EEEEHHHHH---HHHHHTCCCCCCSEEEEESTTCCS-----HHHHHHHHHHHHHHH---------------------TTS
T ss_pred EEEchHHHH---HHHhcCccccCCCEEEEeCCccCC-----ccHHHHHHHHHHHhh---------------------CCC
Confidence 788888753 344455678999999999999963 222233333333321 246
Q ss_pred ceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcC
Q 000107 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEG 779 (2191)
Q Consensus 700 iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g 779 (2191)
+|+|+||||+++. ..-+..... |+.. +. ..... .....+..++ ...+
T Consensus 125 ~~~l~~SAT~~~~--------~~~~~~~~~--~i~~-~~--~~~~~-----------------~~~~~~~~~l---~~~~ 171 (431)
T 2v6i_A 125 AGAIFMTATPPGT--------TEAFPPSNS--PIID-EE--TRIPD-----------------KAWNSGYEWI---TEFD 171 (431)
T ss_dssp CEEEEEESSCTTC--------CCSSCCCSS--CCEE-EE--CCCCS-----------------SCCSSCCHHH---HSCS
T ss_pred CcEEEEeCCCCcc--------hhhhcCCCC--ceee-cc--ccCCH-----------------HHHHHHHHHH---HcCC
Confidence 8999999998741 001111111 1111 10 00000 0011112222 2246
Q ss_pred CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH
Q 000107 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 780 ~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~ 859 (2191)
+++||||++++.|+.++..|.+. ...|+.+||+ +|+
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~v~~lhg~----~r~ 207 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----------------------------------------GKKVLYLNRK----TFE 207 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEESTT----THH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCeEEEeCCc----cHH
Confidence 79999999999999988887542 1238899997 688
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-------------CCCcccCcccccccccccCCCCCCCceEEE
Q 000107 860 VVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-------------IGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 860 ~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-------------~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
.+++.|++|.++|||||+++++|||+|...| |+... ....+.+..+|.||+||+||.|. ..|.++
T Consensus 208 ~~~~~f~~g~~~vLVaT~v~e~GiDip~~~V-I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~ 285 (431)
T 2v6i_A 208 SEYPKCKSEKWDFVITTDISEMGANFKADRV-IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIY 285 (431)
T ss_dssp HHTTHHHHSCCSEEEECGGGGTSCCCCCSEE-EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEE
T ss_pred HHHHhhcCCCCeEEEECchHHcCcccCCcEE-EecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEE
Confidence 9999999999999999999999999994443 32110 11233588899999999999983 245556
Q ss_pred EEe
Q 000107 927 LIC 929 (2191)
Q Consensus 927 ll~ 929 (2191)
++.
T Consensus 286 ~~~ 288 (431)
T 2v6i_A 286 AYS 288 (431)
T ss_dssp EEC
T ss_pred EEc
Confidence 555
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-28 Score=315.10 Aligned_cols=345 Identities=17% Similarity=0.153 Sum_probs=233.2
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
+..|+ +||++|..+++. +++|+ |..++||+|||++|.+|++...+ .|+.++||+|+++||.|.++++..++..+
T Consensus 106 R~lG~-rP~~VQ~~~ip~--Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAA--LHLGN--VAEMKTGEGKTLTCVLPAYLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHSC-CCCHHHHHHHHH--HHTTE--EEECCTTSCHHHHTHHHHHHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-CCCHHHHHHHHh--HhcCC--EEEecCCCccHHHHHHHHHHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34799 999999999987 88887 99999999999999999976555 47789999999999999999999999999
Q ss_pred CCeEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccch----------
Q 000107 598 GRHVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNR---------- 659 (2191)
Q Consensus 598 g~~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~R---------- 659 (2191)
|++|..++|+.... ....+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |..|
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 99999999875421 1112479999999998 66666532 24567889999999999887 5433
Q ss_pred -----hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE-----------------EEeccCCC-HHHHH
Q 000107 660 -----GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV-----------------GMSATMPN-VAAVA 716 (2191)
Q Consensus 660 -----G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII-----------------~mSATL~N-~~~la 716 (2191)
...+..++..+. .. .++. -..+..|++ ++|||.+. ...+.
T Consensus 260 ~~~~~y~~i~~iv~~L~---~~-----~dy~---------vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~ 322 (922)
T 1nkt_A 260 GASNWYTEFARLAPLME---KD-----VHYE---------VDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLN 322 (922)
T ss_dssp CCHHHHHHHHHHHHHSC---BT-----TTEE---------EETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHH
T ss_pred cchhHHHHHHHHHHhCc---cc-----ccce---------eccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHH
Confidence 233444444441 00 0000 001456777 78888764 23333
Q ss_pred HHhhcc-ccccc-----------------ccccc-------------ceEEEE----------eccccc----c------
Q 000107 717 DWLQAA-LYETN-----------------FRPVP-------------LEEYIK----------VGNAIY----S------ 745 (2191)
Q Consensus 717 ~wL~a~-l~~~~-----------------~Rpvp-------------L~e~i~----------~~~~~~----~------ 745 (2191)
..|.+. +|..+ .|..+ .++.+. +....| .
T Consensus 323 ~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMT 402 (922)
T 1nkt_A 323 NALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMT 402 (922)
T ss_dssp HHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccc
Confidence 333221 11000 01000 000000 000000 0
Q ss_pred ----chhhHHHHHHHh------hc-----------cCCC---ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHH
Q 000107 746 ----KKMDVVRTILTA------AN-----------LGGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSK 801 (2191)
Q Consensus 746 ----~~~~~~r~l~~~------~~-----------~~~~---d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~ 801 (2191)
........++.. .. .-.. +...+...+.+....+.++||||+|+..++.++..|.+
T Consensus 403 GTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~ 482 (922)
T 1nkt_A 403 GTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK 482 (922)
T ss_dssp SCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 000011111100 00 0001 12334455555555678999999999999999888855
Q ss_pred HHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccc
Q 000107 802 FLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAA 881 (2191)
Q Consensus 802 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~ 881 (2191)
. ++ .+..+||++...++.+|.++|+.| .|+|||++++|
T Consensus 483 ~----Gi------------------------------------~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 520 (922)
T 1nkt_A 483 R----RI------------------------------------PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGR 520 (922)
T ss_dssp T----TC------------------------------------CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCST
T ss_pred C----CC------------------------------------CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhc
Confidence 2 11 155689999999999999999998 69999999999
Q ss_pred cCCCCCc----------------------------------------------------eEEeecCCCCCcccCcccccc
Q 000107 882 GVNLPAR----------------------------------------------------RVIFRQPRIGRDFIDGTRYRQ 909 (2191)
Q Consensus 882 GVNLPav----------------------------------------------------~VVI~~p~~g~~~is~~~y~Q 909 (2191)
|+||+.. .+||++.++. +...|.|
T Consensus 521 GtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe----s~riy~q 596 (922)
T 1nkt_A 521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE----SRRIDNQ 596 (922)
T ss_dssp TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS----SHHHHHH
T ss_pred CccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC----CHHHHHH
Confidence 9999974 5899888776 7888999
Q ss_pred cccccCCCCCCCceEEEEEeChhh
Q 000107 910 MAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 910 miGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|+||+||.| .+|.++.|++.++
T Consensus 597 r~GRTGRqG--dpG~s~fflSleD 618 (922)
T 1nkt_A 597 LRGRSGRQG--DPGESRFYLSLGD 618 (922)
T ss_dssp HHHTSSGGG--CCEEEEEEEETTS
T ss_pred HhcccccCC--CCeeEEEEechhH
Confidence 999999999 8999999887654
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=310.43 Aligned_cols=321 Identities=15% Similarity=0.187 Sum_probs=185.1
Q ss_pred CCCHHHHHhhhhccccc-----CCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhHHHHHHHH-HH
Q 000107 524 KLYPWQVECLHVDGVLQ-----RRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYVSICAEKA-EH 589 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~-----gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~raLA~q~~-~~ 589 (2191)
.|+|+|.++++. ++. ++++++++|||+|||+++..++.+.+.. .++++|||+|+++|+.|+. +.
T Consensus 178 ~lr~~Q~~ai~~--~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINR--AVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp -CCHHHHHHHHH--HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CchHHHHHHHHH--HHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 799999999986 543 4779999999999999976554443332 4579999999999999988 55
Q ss_pred HHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHH--hhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR--MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~--l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
++. ++..+..+.+. ....+.+|+|+||+++....+. +........+++|||||+|++.... +..+..++
T Consensus 256 ~~~----~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il 326 (590)
T 3h1t_A 256 FTP----FGDARHKIEGG----KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREIL 326 (590)
T ss_dssp CTT----TCSSEEECCC------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHH
T ss_pred HHh----cchhhhhhhcc----CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHH
Confidence 543 34444444332 3445689999999998776531 1233345678999999999987532 23444444
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhccccccccc-------cccceEE-E
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAALYETNFR-------PVPLEEY-I 737 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~l~~~~~R-------pvpL~e~-i 737 (2191)
..+ +..++|+||||..+ ......+++..++..... ..|.... +
T Consensus 327 ~~~---------------------------~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~ 379 (590)
T 3h1t_A 327 EYF---------------------------EPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRV 379 (590)
T ss_dssp HHS---------------------------TTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEE
T ss_pred HhC---------------------------CcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEe
Confidence 443 24689999999653 345666666543321111 0111111 1
Q ss_pred Eecccc--ccchhhHHH---HHHHhhccCCC----------ChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHHH
Q 000107 738 KVGNAI--YSKKMDVVR---TILTAANLGGK----------DPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARHV 799 (2191)
Q Consensus 738 ~~~~~~--~~~~~~~~r---~l~~~~~~~~~----------d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~L 799 (2191)
...... +........ ........... ....+...+.+.+ ..++++||||++++.|+.++..|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L 459 (590)
T 3h1t_A 380 ISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRAL 459 (590)
T ss_dssp EETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHH
T ss_pred eeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHH
Confidence 110000 000000000 00000000000 1112222232222 23579999999999999999998
Q ss_pred HHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCce---EEEec
Q 000107 800 SKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR---VLTAT 876 (2191)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ik---VLVAT 876 (2191)
.+...... ......+..+||.++ ++|+.+++.|++|..+ |||||
T Consensus 460 ~~~~~~~~--------------------------------~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt 506 (590)
T 3h1t_A 460 NNLNSDLS--------------------------------RKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTS 506 (590)
T ss_dssp HHHTHHHH--------------------------------TTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEES
T ss_pred HHhhhhhh--------------------------------ccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEEC
Confidence 76543210 001123778899875 4799999999998766 88999
Q ss_pred ccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 877 STLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 877 stLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+++++|||+|++.+||.+..+. +...|.||+||+||.+.
T Consensus 507 ~~l~~GiDip~v~~Vi~~~~~~----s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 507 QLLTTGVDAPTCKNVVLARVVN----SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp STTTTTCCCTTEEEEEEESCCC----CHHHHHHHHTTSCCCBG
T ss_pred ChhhcCccchheeEEEEEecCC----ChHHHHHHHhhhcccCc
Confidence 9999999999999998755544 88899999999999884
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=275.06 Aligned_cols=336 Identities=15% Similarity=0.158 Sum_probs=213.6
Q ss_pred CCCCHHHHHhhhhccc----ccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 523 SKLYPWQVECLHVDGV----LQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~i----l~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
..|+|+|.+++.. + ..+++.|++.+||+|||+++...+. .+... .+++|||+| .+|+.|+.+++++++.
T Consensus 36 ~~L~~~Q~~~v~~--l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSW--MRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICP-LSVLKNWEEELSKFAP- 110 (500)
T ss_dssp SCCCHHHHHHHHH--HHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT-
T ss_pred ccchHHHHHHHHH--HHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC-
Confidence 4799999999875 3 3578999999999999999865444 44432 368999999 5788999999988764
Q ss_pred cCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcC
Q 000107 597 LGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGE 676 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~ 676 (2191)
+.++..++|+... ....+.+|+|+|++.+..... .....+++||+||+|.+.+.. ......+..+
T Consensus 111 -~~~v~~~~g~~~~-~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l------ 175 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL------ 175 (500)
T ss_dssp -TSCEEECSSSTTS-CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS------
T ss_pred -CceEEEEecCchh-ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh------
Confidence 4567767666532 223457899999998754332 122357999999999997642 1122222221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHH---HHhhccccc--------------------------
Q 000107 677 GTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVA---DWLQAALYE-------------------------- 725 (2191)
Q Consensus 677 ~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la---~wL~a~l~~-------------------------- 725 (2191)
...+.++||||.. ++.++. .|++...+.
T Consensus 176 ---------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 234 (500)
T 1z63_A 176 ---------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKA 234 (500)
T ss_dssp ---------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHH
T ss_pred ---------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHH
Confidence 2357899999953 344433 333221110
Q ss_pred ---------cc-----cccccceE--EEEeccccccchhhHHHH---------------------------HHHhhc---
Q 000107 726 ---------TN-----FRPVPLEE--YIKVGNAIYSKKMDVVRT---------------------------ILTAAN--- 759 (2191)
Q Consensus 726 ---------~~-----~RpvpL~e--~i~~~~~~~~~~~~~~r~---------------------------l~~~~~--- 759 (2191)
.. ....|-.. .+.+... ......... +.....
T Consensus 235 ~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~--~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~ 312 (500)
T 1z63_A 235 IISPFILRRTKYDKAIINDLPDKIETNVYCNLT--PEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 312 (500)
T ss_dssp HHTTTEECCCTTCHHHHTTSCSEEEEEEEECCC--HHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTH
T ss_pred HHhhHeeeecccccchhhcCCCCeEEEEEcCCC--HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHH
Confidence 00 00111111 1111100 000000000 000000
Q ss_pred ---------cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcC
Q 000107 760 ---------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRC 830 (2191)
Q Consensus 760 ---------~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 830 (2191)
....+...+.+++.+....+.++||||.++..++.++..|....
T Consensus 313 l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~--------------------------- 365 (500)
T 1z63_A 313 LLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL--------------------------- 365 (500)
T ss_dssp HHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH---------------------------
T ss_pred HhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh---------------------------
Confidence 00112234556667767778999999999998887776664421
Q ss_pred CCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcC-Cce-EEEecccccccCCCCCceEEeecCCCCCcccCccccc
Q 000107 831 PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG-LVR-VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYR 908 (2191)
Q Consensus 831 ~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G-~ik-VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~ 908 (2191)
+..+.++||+++..+|..+++.|++| ..+ +|++|.++++|+|+|++.+||.++.+ .++..|.
T Consensus 366 ------------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~----~~~~~~~ 429 (500)
T 1z63_A 366 ------------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW----WNPAVED 429 (500)
T ss_dssp ------------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC----SCC---C
T ss_pred ------------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC----CCcchHH
Confidence 12367799999999999999999998 565 79999999999999999998876554 3888999
Q ss_pred ccccccCCCCCCCceEEEEEeChhhH-HHHHhhhccC
Q 000107 909 QMAGRAGRTGIDTKGESMLICKPEEV-KKIMGLLNES 944 (2191)
Q Consensus 909 QmiGRAGR~G~d~~Ge~ill~~~~e~-~~~~~ll~~~ 944 (2191)
||+||++|.|......+|.++..... +++.+++...
T Consensus 430 Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K 466 (500)
T 1z63_A 430 QATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 466 (500)
T ss_dssp HHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTC
T ss_pred HHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHH
Confidence 99999999998777777777765433 2334444433
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=254.25 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=153.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-------cCCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-------TGKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-------~g~kaL~I~P~ra 581 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.|++++++||||+|||++|.++++..+.. .++++||++|+++
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPV--ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHH--HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHH
Confidence 789999999999999999999999987 8899999999999999999999999998874 4668999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
|+.|+++.++.++...++++..++|+..... +..+++|+|+||+++..++.+ ....+.++++|||||+|.+.++
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeCHHHHhhh
Confidence 9999999999998888999999988764321 223579999999999888876 4457889999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
+++..++.++..+ +++.|+++||||+++ ...+++
T Consensus 192 ~~~~~~~~i~~~~--------------------------~~~~q~~~~SAT~~~~~~~~~~ 226 (242)
T 3fe2_A 192 GFEPQIRKIVDQI--------------------------RPDRQTLMWSATWPKEVRQLAE 226 (242)
T ss_dssp TCHHHHHHHHTTS--------------------------CSSCEEEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHHHhC--------------------------CccceEEEEEeecCHHHHHHHH
Confidence 8888888776544 356899999999985 444443
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=256.18 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=154.2
Q ss_pred CCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhH
Q 000107 507 SWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYV 580 (2191)
Q Consensus 507 ~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~r 580 (2191)
..|++.+.+.+++.||.+|+++|.++++. ++.++|++++||||||||++|.+++++.+.. .+.++||++|++
T Consensus 59 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~ 136 (262)
T 3ly5_A 59 NLVNENTLKAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTR 136 (262)
T ss_dssp -CCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred cccCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCH
Confidence 34889999999999999999999999987 8899999999999999999999999998875 577899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+++.+++++...+..+..++|+..... +..+++|+|+||+++..++++. ....+.++++|||||+|++.+
T Consensus 137 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 137 ELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhh
Confidence 99999999999999888999998888764311 2235799999999998887652 224678899999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
++++..++.++..+ +...|+|+||||+++ +..+++
T Consensus 216 ~~~~~~l~~i~~~~--------------------------~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 216 VGFEEELKQIIKLL--------------------------PTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TTCHHHHHHHHHHS--------------------------CSSSEEEEECSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhC--------------------------CCCCeEEEEEecCCHHHHHHHH
Confidence 88888888887665 346799999999985 444443
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=287.81 Aligned_cols=348 Identities=15% Similarity=0.170 Sum_probs=212.6
Q ss_pred CCCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.+|+|+|.+++.. ++. +.++|++++||+|||+++..++...+.. ..+++|||+|+ +|+.|+..++.+.+ ++
T Consensus 152 ~~LrpyQ~eav~~--~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l 225 (968)
T 3dmq_A 152 TSLIPHQLNIAHD--VGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF---NL 225 (968)
T ss_dssp SCCCHHHHHHHHH--HHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS---CC
T ss_pred CCCcHHHHHHHHH--HHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh---CC
Confidence 3799999999976 443 5689999999999999997766554433 22489999999 99999998886655 66
Q ss_pred eEEEEeccCC------CCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchh-HHHHHHHHHHHH
Q 000107 600 HVRSYYGNQG------GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG-YLLELLLTKLRY 672 (2191)
Q Consensus 600 ~V~~~~G~~~------~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG-~~lE~lL~kLr~ 672 (2191)
.+..+.|... ........+|+|+|++.+..-... .......++++|||||+|.+...... .....++..+..
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 7766665541 112234579999999976321100 01112346899999999999764321 112223333321
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHH---HHHHHhhccccccc---------cccc-------
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVA---AVADWLQAALYETN---------FRPV------- 731 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~---~la~wL~a~l~~~~---------~Rpv------- 731 (2191)
...++++||||.- +.. .+..++....|... +.++
T Consensus 305 -------------------------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 305 -------------------------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp -------------------------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHH
Confidence 2346999999953 122 23333332221110 0000
Q ss_pred ----c--------ceEEE-----------------------------------------Ee------cc--c-cc---cc
Q 000107 732 ----P--------LEEYI-----------------------------------------KV------GN--A-IY---SK 746 (2191)
Q Consensus 732 ----p--------L~e~i-----------------------------------------~~------~~--~-~~---~~ 746 (2191)
+ +...+ .. +. . .. ..
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~ 439 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLP 439 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEEC
T ss_pred hccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecC
Confidence 0 00000 00 00 0 00 00
Q ss_pred hhhHHHHHHH---------------------hh----------cc--CCCChhHHHHHHHHHHhcCCcEEEEeCchhHHH
Q 000107 747 KMDVVRTILT---------------------AA----------NL--GGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCE 793 (2191)
Q Consensus 747 ~~~~~r~l~~---------------------~~----------~~--~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e 793 (2191)
.....+.... .. .. .......+..++.. ..+.++||||+++..++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~ 517 (968)
T 3dmq_A 440 LPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATAL 517 (968)
T ss_dssp CCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHH
T ss_pred CCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHH
Confidence 0000000000 00 00 00011223333332 35789999999999988
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCC--ce
Q 000107 794 STARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL--VR 871 (2191)
Q Consensus 794 ~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~--ik 871 (2191)
.++..|... .+..+..+||+|+..+|..+++.|++|. ++
T Consensus 518 ~l~~~L~~~---------------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~ 558 (968)
T 3dmq_A 518 QLEQVLRER---------------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ 558 (968)
T ss_dssp HHHHHHHTT---------------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCE
T ss_pred HHHHHHHHH---------------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Confidence 887776421 1234889999999999999999999998 99
Q ss_pred EEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh-HHHHHhhhccCCCC
Q 000107 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE-VKKIMGLLNESCPP 947 (2191)
Q Consensus 872 VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~~~~~ll~~~l~~ 947 (2191)
|||||+++++|+|+|++.+||.+..+. +...|.||+||+||.|......+|.++.... .+.+.+++...+..
T Consensus 559 vLvaT~v~~~GlDl~~~~~VI~~d~p~----~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 559 VLLCSEIGSEGRNFQFASHMVMFDLPF----NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp EEECSCCTTCSSCCTTCCEEECSSCCS----SHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred EEEecchhhcCCCcccCcEEEEecCCC----CHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 999999999999999999999766543 8899999999999999544334444444432 33455555444433
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=243.30 Aligned_cols=172 Identities=22% Similarity=0.235 Sum_probs=143.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~r 580 (2191)
+++.+.+.+.+.||.+|+++|.++++. ++.|+|+++++|||+|||++|.++++..+.. .+.++||++|++
T Consensus 27 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPIQSQAWPI--ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 678999999999999999999999987 8899999999999999999999999987653 567899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+++++..+. ..++++..++|+..... +..+++|+|+||+++..++.+ ....+.++++|||||+|.+.+
T Consensus 105 ~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 105 ELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhc
Confidence 99999999998865 45788888888764322 234579999999999887765 445688999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
.+++..++.++..+ .++.|+++||||+++
T Consensus 182 ~~~~~~~~~i~~~~--------------------------~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 182 MEFEPQIRKILLDV--------------------------RPDRQTVMTSATWPD 210 (228)
T ss_dssp TTCHHHHHHHHHHS--------------------------CSSCEEEEEESCCCH
T ss_pred cchHHHHHHHHHhC--------------------------CcCCeEEEEEeeCCH
Confidence 88888888876554 356899999999985
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=251.60 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=144.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.++||.+|+++|.++|+. ++.+ +|++++||||||||++|.++++..+... +.++||++|+++||.
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~--il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~ 176 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHH
Confidence 789999999999999999999999987 7876 9999999999999999999999987653 448999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~ 661 (2191)
|+++.++.+...+ ++.+...+|+.... ....+.+|+||||+++..++.+. ....+.++++|||||+|.+.+ .+++.
T Consensus 177 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~~~~~~ 255 (300)
T 3fmo_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 255 (300)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHSTTHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhccCcHH
Confidence 9999999887654 67788777765432 23446799999999988877541 234578999999999999987 45555
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
.+..++..+ +..+|+|+||||+++ +..++.
T Consensus 256 ~~~~i~~~~--------------------------~~~~q~i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 256 QSIRIQRML--------------------------PRNCQMLLFSATFEDSVWKFAQ 286 (300)
T ss_dssp HHHHHHTTS--------------------------CTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCEEEEEeccCCHHHHHHHH
Confidence 555443222 356899999999985 444443
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=243.92 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=150.8
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHH
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICA 584 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~ 584 (2191)
.|++.+.+.+.+.||..|+|+|.++++. ++.|++++++||||+|||++|.++++..+.. .+.++||++|+++|+.
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPV--MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 3789999999999999999999999987 8999999999999999999999999988864 4668999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCC-----CCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQG-----GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~-----~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
|+++.+.+++...++++..++|+.. ......+++|+|+||+++..++++......+.++++|||||+|++.++++
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred HHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 9999999998888888887776532 12234568999999999988887633345688999999999999987654
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
....+.+...++.. ...+.|+++||||+++ ++.+|+..
T Consensus 193 ~~~~~~~~~i~~~~----------------------~~~~~~~~~~SAT~~~--~v~~~~~~ 230 (245)
T 3dkp_A 193 TGFRDQLASIFLAC----------------------TSHKVRRAMFSATFAY--DVEQWCKL 230 (245)
T ss_dssp -CHHHHHHHHHHHC----------------------CCTTCEEEEEESSCCH--HHHHHHHH
T ss_pred ccHHHHHHHHHHhc----------------------CCCCcEEEEEeccCCH--HHHHHHHH
Confidence 44444444444332 1356899999999974 55566554
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=234.91 Aligned_cols=173 Identities=23% Similarity=0.265 Sum_probs=146.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPI--ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHH--HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987653 356899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.+..+.... +..+..++|+.... ....+++|+|+||+++..++.+ ....+.++++||+||+|.+.+.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~~ 165 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQDFVQ 165 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhCcHH
Confidence 99999988776 78888888876421 2345689999999999887765 34467899999999999998877877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
.++.++..+ +.+.|+|+||||+++
T Consensus 166 ~l~~i~~~~--------------------------~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 166 IMEDIILTL--------------------------PKNRQILLYSATFPL 189 (206)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEEESCCCH
T ss_pred HHHHHHHhC--------------------------CccceEEEEEeeCCH
Confidence 777776554 246899999999974
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=236.81 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=146.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+++|.++++. +++++++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPG--ALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999988664 356899999999999999
Q ss_pred HHHHHHHhhcc----CCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPL----GRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~l----g~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
++.++++.... ++.+..++|+... ..+..+++|+|+||+++..++++ ....+.++++|||||+|.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~ 166 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLDMG 166 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHHTT
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhhhC
Confidence 99999987765 6788888887532 22345689999999999888765 44567889999999999999887
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
++..++.++..+ +...|+++||||+++
T Consensus 167 ~~~~l~~i~~~~--------------------------~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 167 FITDVDQIAARM--------------------------PKDLQMLVFSATIPE 193 (219)
T ss_dssp CHHHHHHHHHTS--------------------------CTTCEEEEEESCCCG
T ss_pred hHHHHHHHHHhC--------------------------CcccEEEEEecCCCH
Confidence 777776665443 346899999999975
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=237.52 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=149.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.|+|+++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 789999999999999999999999987 8899999999999999999999999988754 356999999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-hhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN-RGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~-RG~ 661 (2191)
++.++.+.... ++++..++|+..... ...+.+|+|+||+++..++++ ....+.++++|||||+|.+.+.+ ++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~~~ 186 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEGSFQE 186 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTTSSHH
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCcchHH
Confidence 99999987665 788888888764211 123679999999999888765 34467889999999999998875 777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
.++.++..+ +...|+|+||||+++ .+.+++..
T Consensus 187 ~~~~i~~~~--------------------------~~~~~~l~lSAT~~~--~~~~~~~~ 218 (230)
T 2oxc_A 187 QINWIYSSL--------------------------PASKQMLAVSATYPE--FLANALTK 218 (230)
T ss_dssp HHHHHHHHS--------------------------CSSCEEEEEESCCCH--HHHHHHTT
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEeccCH--HHHHHHHH
Confidence 777666544 246799999999874 45555543
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=233.68 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=144.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987754 356899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+..++...++++..++|+..... ...+++|+|+||+++..++.+ ....+.++++||+||+|.+.+.+++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 99 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp HHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 99999988888899988888764321 123489999999998887765 4456788999999999999888777777
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
..++..+ +...|+|+||||+++
T Consensus 177 ~~i~~~~--------------------------~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 177 YQIFTLL--------------------------PPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHHHHS--------------------------CTTCEEEEEESSCCH
T ss_pred HHHHHhC--------------------------CccCeEEEEEeecCH
Confidence 6665543 356899999999985
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=243.27 Aligned_cols=182 Identities=17% Similarity=0.209 Sum_probs=148.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----------CCEEEEEc
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----------GKMALLVL 577 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----------g~kaL~I~ 577 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.++++++++|||+|||++|.++++..+... +.++||++
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPA--ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 455666777889999999999999987 89999999999999999999999999887642 35899999
Q ss_pred hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 578 P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
|+++|+.|+++.++.+....++++..++|+.... .+..+++|+|+||+++..++++ ....+.++++||+||+|+
T Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 108 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADR 185 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCEEEEeCHHH
Confidence 9999999999999998888888888888876432 1234679999999999888765 344678899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 654 VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 654 l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
+.+.+++..++.++.+++.. ...+.|+++||||+++ ..+++
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~----------------------~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMP----------------------SGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCC----------------------CGGGCEEEEEESSCCHHHHHHH
T ss_pred HHhCchHHHHHHHHhhccCC----------------------CCCCcEEEEEEEeCCHHHHHHH
Confidence 99888888888877643110 1136799999999975 33443
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=237.63 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=148.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYVSI 582 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~raL 582 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.|+++++++|||+|||++|.++++..+.. .+.++||++|+++|
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L 109 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 109 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHH
Confidence 779999999999999999999999987 8899999999999999999999999988764 46789999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.|+++.++.++...++.+..++|+..... ...+++|+|+||+++..++.+. ....+.++++|||||+|.+.++++
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~~ 188 (236)
T 2pl3_A 110 AYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGF 188 (236)
T ss_dssp HHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCCc
Confidence 999999999988888889988888764311 1136799999999988777652 234578899999999999998887
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
+..++.++..+ +...|+++||||+++ ..++++
T Consensus 189 ~~~~~~i~~~~--------------------------~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 189 ADTMNAVIENL--------------------------PKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp HHHHHHHHHTS--------------------------CTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhC--------------------------CCCCeEEEEEeeCCHHHHHHHH
Confidence 77777665544 346799999999984 444444
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=238.22 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=145.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.++|+++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987654 456999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CC-CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LP-KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~-~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.++.++...+..+..++|+..... +. ..++|+|+||+++..++++ ....+..+++|||||+|.+.+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~~~~ 192 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRGFKD 192 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccCcHH
Confidence 99999988878888888888754321 22 2379999999998888765 34467889999999999998877777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
.+..++..+ +...|+|+||||+++ ..++.
T Consensus 193 ~l~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 193 QIYEIFQKL--------------------------NTSIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEEecCHHHHHHH
Confidence 776666544 356899999999984 33433
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=240.57 Aligned_cols=180 Identities=21% Similarity=0.278 Sum_probs=150.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.++++||..|+++|.++++. ++.|+++++++|||+|||++|.+++++.+... +.++||++|+++|+.|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPL--ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 778999999999999999999999987 89999999999999999999999999888764 45799999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.++.+....++++..++|+..... +..+++|+|+||+++..++.+. ....+.++++|||||+|++.+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~~~~~~ 206 (249)
T 3ber_A 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNMDFETE 206 (249)
T ss_dssp HHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHTTCHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhccChHHH
Confidence 99999998888999998888764311 2346799999999998877652 223578899999999999998888877
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
++.++..+ +...|+++||||+++ ..++++
T Consensus 207 l~~i~~~~--------------------------~~~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 207 VDKILKVI--------------------------PRDRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp HHHHHHSS--------------------------CSSSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHhC--------------------------CCCCeEEEEeccCCHHHHHHHH
Confidence 77766443 346899999999984 444444
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=231.06 Aligned_cols=179 Identities=25% Similarity=0.313 Sum_probs=147.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSIC 583 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA 583 (2191)
|++.+.+.+.+.||..|+|+|.++++. +++++++++++|||+|||++|.++++..+.. .+.++||++|+++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~ 85 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPL--ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELA 85 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHH
Confidence 678999999999999999999999987 8999999999999999999999999988753 467899999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
.|+++.+..++.. +++..++|+..... ...+++|+|+||+++..++++ ....+.++++||+||+|.+.+.++
T Consensus 86 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 86 LQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccch
Confidence 9999999988654 56777777654311 123579999999999888876 445688999999999999988777
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHh
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWL 719 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL 719 (2191)
+..++.++..+ +...|+|+||||+++ ..++.+++
T Consensus 162 ~~~~~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 162 EEEVEALLSAT--------------------------PPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHHHHHHHHTS--------------------------CTTSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------------------------CccCeEEEEEEecCHHHHHHHHHH
Confidence 77777665433 346899999999985 45555443
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=266.32 Aligned_cols=373 Identities=13% Similarity=0.145 Sum_probs=207.5
Q ss_pred cHHHHHHHHHcC-------CCCCCHHHHHhhhhccccc--------------CCeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 510 PSEICSIYKKRG-------ISKLYPWQVECLHVDGVLQ--------------RRNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 510 p~~l~~~l~~~G-------i~~l~p~Q~eal~~~~il~--------------gknlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
+..+.+.+...- ...|+|+|.+|++. ++. +++.+++++||||||+++ +++++.+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~--il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~ 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATER--ILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHH--HHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHH--HHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh
Confidence 355566665431 23599999999986 443 478999999999999998 666655443
Q ss_pred --cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CC-CCCCceEEEchHHHHHHHHHhhhcCCCC
Q 000107 569 --TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SL-PKDTSVAVCTIEKANSLVNRMLEEGRLS 641 (2191)
Q Consensus 569 --~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~ 641 (2191)
...++|||+|+++|+.|..+.+..+... . ..+..... .+ ..+.+|+|+||+++..++........+.
T Consensus 327 ~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 327 LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp CTTCCEEEEEECGGGCCHHHHHHHHTTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 2359999999999999999988776432 1 11221110 11 2457999999999988776421112356
Q ss_pred ccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH------HHH
Q 000107 642 EIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV------AAV 715 (2191)
Q Consensus 642 ~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~------~~l 715 (2191)
...+||+||+|++.. |..+..++..+ ++.+++|||||+... ...
T Consensus 401 ~~~lvIiDEAHrs~~---~~~~~~I~~~~---------------------------p~a~~lgfTATP~~~~~~~~~~~t 450 (1038)
T 2w00_A 401 QQVVFIFDECHRSQF---GEAQKNLKKKF---------------------------KRYYQFGFTGTPIFPENALGSETT 450 (1038)
T ss_dssp SCEEEEEESCCTTHH---HHHHHHHHHHC---------------------------SSEEEEEEESSCCCSTTCTTSCCH
T ss_pred cccEEEEEccchhcc---hHHHHHHHHhC---------------------------CcccEEEEeCCccccccchhhhHH
Confidence 789999999999652 33333333222 457999999997532 245
Q ss_pred HHHhhcccccccc-------ccccceEEEE-eccccccchh-h-HHHHHHHhhc-cCCCChhHHHHHHHHHHh-------
Q 000107 716 ADWLQAALYETNF-------RPVPLEEYIK-VGNAIYSKKM-D-VVRTILTAAN-LGGKDPDHIVELCDEVVQ------- 777 (2191)
Q Consensus 716 a~wL~a~l~~~~~-------RpvpL~e~i~-~~~~~~~~~~-~-~~r~l~~~~~-~~~~d~d~l~~Ll~e~~~------- 777 (2191)
..++|..++.... --+|+...+. +... +.... . .......... ..-..+..+..++..++.
T Consensus 451 ~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~-~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~ 529 (1038)
T 2w00_A 451 ASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQ-FKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTH 529 (1038)
T ss_dssp HHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGG-GHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccch-hhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhh
Confidence 5566644332111 1123221111 1000 00000 0 0000100000 000122333222222211
Q ss_pred ------cCCcEEEEeCchhHHHHHHHHHHHHHhhc-----c---cc----cCCCCchhhhhHHHHHHhhc---CCCCCCh
Q 000107 778 ------EGHSVLIFCSSRKGCESTARHVSKFLKKF-----S---IN----VHSSDSEFIDITSAIDALRR---CPAGLDP 836 (2191)
Q Consensus 778 ------~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~-----~---~~----~~~~~~~~~~~~~~~~~L~~---~~~gld~ 836 (2191)
.+.++||||+|+..|..++..|.+..... . .. ......+... ....+.. .+.+++.
T Consensus 530 ~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~---~~G~~~~e~~~~~~~~~ 606 (1038)
T 2w00_A 530 RTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQN---AIGEISDETFDTSAMDS 606 (1038)
T ss_dssp CSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC---------CCCCCCCCSCGGGSCH
T ss_pred hhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccc---cccccccccccccccch
Confidence 24689999999999999999998765321 0 00 0000000000 0000000 0000000
Q ss_pred h----hhhhc-----CCcEEEEcC-CCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe-ecCCCCCcccCcc
Q 000107 837 V----LEETL-----PSGVAYHHA-GLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF-RQPRIGRDFIDGT 905 (2191)
Q Consensus 837 ~----L~~~l-----~~GVa~hHa-gLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI-~~p~~g~~~is~~ 905 (2191)
. +...+ .+|-.|.+. +-...+|..+.+.|++|.++|||+|+++.+|+|+|.+.+++ +-| ++..
T Consensus 607 ~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tlylDkp------l~~~ 680 (1038)
T 2w00_A 607 SAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVDKN------LRYH 680 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEEEESC------CCHH
T ss_pred hHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEEEccC------CCcc
Confidence 0 00000 000000000 00123689999999999999999999999999999997764 322 3667
Q ss_pred cccccccccCCCCCC--CceEEEEEeCh
Q 000107 906 RYRQMAGRAGRTGID--TKGESMLICKP 931 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d--~~Ge~ill~~~ 931 (2191)
.|+||+||++|.+.+ +.|.++-++..
T Consensus 681 ~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred ceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 899999999999843 45777776654
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=229.35 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=142.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. +++++++++++|||+|||++|.++++..+... +.++||++|+++|+.|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 779999999999999999999999987 88999999999999999999999999876542 34899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-ch
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NR 659 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~R 659 (2191)
++.++++.... ++++..++|+..... + ...++|+|+||+++..++++ ....+.++++||+||+|.+.+. ++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~ 176 (220)
T 1t6n_A 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM 176 (220)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSHHH
T ss_pred HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhcccCc
Confidence 99999887765 788888888754211 1 12469999999999888775 4456889999999999998763 33
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
...+..++..+ +.+.|+|+||||+++ ..++.+
T Consensus 177 ~~~~~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 177 RRDVQEIFRMT--------------------------PHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHHHHHHHTS--------------------------CSSSEEEEEESCCCTTTHHHHH
T ss_pred HHHHHHHHHhC--------------------------CCcCeEEEEEeecCHHHHHHHH
Confidence 33333333211 346899999999986 455444
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=239.25 Aligned_cols=343 Identities=19% Similarity=0.183 Sum_probs=220.5
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-..-. +.+|+ |.-..||+|||++|.+|++-..+ .|+.+.+|+|+..||.+-++++..++..+|+
T Consensus 72 lg~-r~~dvQligg~~--L~~G~--iaEM~TGEGKTLva~lp~~lnAL-~G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIA--LHEGK--VAEMKTGEGKTLAATMPIYLNAL-IGKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHH--HHTTC--EEECCTTSCHHHHTHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHH--HhCCC--hhhccCCCCccHHHHHHHHHHHh-cCCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 576 688999876643 56666 88999999999999999875555 4888999999999999999999999999999
Q ss_pred eEEEEeccC---------------------C------CC------------------CCCC-------CCceEEEchHHH
Q 000107 600 HVRSYYGNQ---------------------G------GG------------------SLPK-------DTSVAVCTIEKA 627 (2191)
Q Consensus 600 ~V~~~~G~~---------------------~------~~------------------~l~~-------~~~IiV~TpEkl 627 (2191)
+|+..+... . .. .... .+||.++|..-+
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 999888720 0 00 0111 279999998775
Q ss_pred -HHHHH-Hhh---hcCCCCccceEEEccccccc-ccchhH-----------HHHHHHHHH-HHhh---------------
Q 000107 628 -NSLVN-RML---EEGRLSEIGIIVIDELHMVA-DQNRGY-----------LLELLLTKL-RYAA--------------- 674 (2191)
Q Consensus 628 -~~Ll~-~l~---~~~~L~~l~lVVIDEaH~l~-d~~RG~-----------~lE~lL~kL-r~~~--------------- 674 (2191)
.+.++ ++. .......+.+.||||+|-|. |..|.+ .+...+..+ +.+.
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 23343 321 12234668999999998653 322211 011111110 0000
Q ss_pred ----------------------------------------cCCCC---CC----CCCCCCCCCCCCCC------------
Q 000107 675 ----------------------------------------GEGTS---DS----SSGENSGTSSGKAD------------ 695 (2191)
Q Consensus 675 ----------------------------------------~~~~~---~s----~~~~~~~~~~~~~~------------ 695 (2191)
.+... .. --++..+.--..++
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 00000 00 00000000000000
Q ss_pred --------------------CCCCceEEEEeccCCC-HHHHHHHhhcccc-ccccccccceEEEEeccccccchhhHHHH
Q 000107 696 --------------------PAHGLQIVGMSATMPN-VAAVADWLQAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753 (2191)
Q Consensus 696 --------------------~~~~iqII~mSATL~N-~~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r~ 753 (2191)
...-.++.|||+|+.. ..++.+..+..++ .+..+|+.-... ...+|.....
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~---~d~vy~t~~e---- 458 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDH---DDLVFRTQKE---- 458 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEEC---CCEEESSHHH----
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeec---CcEEEecHHH----
Confidence 0011269999999875 4445554443322 233444322211 1112221111
Q ss_pred HHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCC
Q 000107 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG 833 (2191)
Q Consensus 754 l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g 833 (2191)
+...+...+.+....+.++||||+|+..++.++..|.+. ++
T Consensus 459 ----------K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~----Gi------------------------- 499 (822)
T 3jux_A 459 ----------KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK----GI------------------------- 499 (822)
T ss_dssp ----------HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT----TC-------------------------
T ss_pred ----------HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC----CC-------------------------
Confidence 123455556555566889999999999999998887531 11
Q ss_pred CChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC--------CceEEeecCCCCCcccCcc
Q 000107 834 LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP--------ARRVIFRQPRIGRDFIDGT 905 (2191)
Q Consensus 834 ld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLP--------av~VVI~~p~~g~~~is~~ 905 (2191)
.+..+||+....+|..+..+++.| .|+|||++++||+||+ +..+||++..+. +..
T Consensus 500 -----------~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe----s~r 562 (822)
T 3jux_A 500 -----------PHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE----SRR 562 (822)
T ss_dssp -----------CCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS----SHH
T ss_pred -----------CEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC----CHH
Confidence 155689998888888888888887 6999999999999998 566999888776 788
Q ss_pred cccccccccCCCCCCCceEEEEEeChhh
Q 000107 906 RYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.|.||+||+||.| .+|.++.|++.++
T Consensus 563 ~y~qriGRTGRqG--~~G~a~~fvsleD 588 (822)
T 3jux_A 563 IDNQLRGRAGRQG--DPGESIFFLSLED 588 (822)
T ss_dssp HHHHHHTTSSCSS--CCCEEEEEEETTS
T ss_pred HHHHhhCccccCC--CCeeEEEEechhH
Confidence 8999999999999 8999999987654
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=256.55 Aligned_cols=329 Identities=15% Similarity=0.151 Sum_probs=212.9
Q ss_pred CCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
+|+|+|.+++... ....+++.|++.+||.|||+++..++...+. ...+.+|||+| .+|+.|..+++.+++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 7999999999741 1237899999999999999998665544332 24567999999 7888999999988764 46
Q ss_pred eEEEEeccCCCC----------------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 600 HVRSYYGNQGGG----------------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 600 ~V~~~~G~~~~~----------------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
.+..++|..... ......+|+|+|++.+......+. -..+++|||||+|.+.... ..+
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~----~~~w~~vIvDEaH~lkn~~--s~~ 386 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG----SIKWQFMAVDEAHRLKNAE--SSL 386 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH----TSEEEEEEETTGGGGCCSS--SHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh----cCCcceeehhhhhhhcCch--hHH
Confidence 677777754211 123357899999999765433321 2257899999999996532 222
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHH---HHhhccccccc-----------
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVA---DWLQAALYETN----------- 727 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la---~wL~a~l~~~~----------- 727 (2191)
...+..+ ...+.++||||.- ++.++. .||....|...
T Consensus 387 ~~~l~~l---------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~ 439 (800)
T 3mwy_W 387 YESLNSF---------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEE 439 (800)
T ss_dssp HHHHTTS---------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTH
T ss_pred HHHHHHh---------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchh
Confidence 2222211 2346799999952 344443 34432211100
Q ss_pred -----------ccc-------------ccce--EEEEecccc-----ccc-------------------hhhHHHHHHHh
Q 000107 728 -----------FRP-------------VPLE--EYIKVGNAI-----YSK-------------------KMDVVRTILTA 757 (2191)
Q Consensus 728 -----------~Rp-------------vpL~--e~i~~~~~~-----~~~-------------------~~~~~r~l~~~ 757 (2191)
.+| .|-. ..+.+.... |.. ....+..+.+.
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~ 519 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKA 519 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 000 1111 111111000 000 00000000000
Q ss_pred ---hc----------------------------cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 758 ---AN----------------------------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 758 ---~~----------------------------~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
.. ....+...+..++......++++||||..+..+..+...|...
T Consensus 520 ~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~---- 595 (800)
T 3mwy_W 520 SNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK---- 595 (800)
T ss_dssp HHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----
T ss_pred hcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----
Confidence 00 0011223455666666667899999999998877766666431
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCc---eEEEecccccccC
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV---RVLTATSTLAAGV 883 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~i---kVLVATstLa~GV 883 (2191)
+..+..+||+++..+|..+++.|+++.. .+|++|.+++.||
T Consensus 596 ------------------------------------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~Gl 639 (800)
T 3mwy_W 596 ------------------------------------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGI 639 (800)
T ss_dssp ------------------------------------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTC
T ss_pred ------------------------------------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCC
Confidence 1237789999999999999999998654 5999999999999
Q ss_pred CCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 884 NLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 884 NLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|||++.+||.++.. .++..+.|++||++|.|......+|.++...
T Consensus 640 NL~~a~~VI~~D~~----wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 640 NLMTADTVVIFDSD----WNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCTTCCEEEESSCC----SCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CccccceEEEecCC----CChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999988876554 3888999999999999988888888887764
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=238.34 Aligned_cols=329 Identities=12% Similarity=0.131 Sum_probs=206.1
Q ss_pred CCCCHHHHHhhhhccc---------ccCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEchhHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGV---------LQRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~i---------l~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~P~raLA~q~~ 587 (2191)
..|+|+|.+++.. + ..+.+.|++.+||.|||+++...+...+... .+++|||+|. +|+.|..
T Consensus 54 ~~LrpyQ~~gv~~--l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 54 KVLRPHQREGVKF--LWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TTCCHHHHHHHHH--HHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHH
T ss_pred hcccHHHHHHHHH--HHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHH
Confidence 3799999999975 3 3467899999999999999876665544321 2468999997 8889999
Q ss_pred HHHHHHhhccCCeEEEEeccCCC------------CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGG------------GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~------------~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+++.+++.. .+.+..++|+... .......+|+|+|++.+.... ....-..+++||+||+|.+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----EVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----HHhhcCCccEEEEECceecC
Confidence 999888754 4555555554311 001224789999999865332 22223467999999999997
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-C-HH---HHHHHhhccccc-----
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-N-VA---AVADWLQAALYE----- 725 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N-~~---~la~wL~a~l~~----- 725 (2191)
+.. ......+..+ ...+.++||||.- | +. .+.+|++..++.
T Consensus 206 n~~--~~~~~al~~l---------------------------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F 256 (644)
T 1z3i_X 206 NSD--NQTYLALNSM---------------------------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEF 256 (644)
T ss_dssp TTC--HHHHHHHHHH---------------------------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHH
T ss_pred Chh--hHHHHHHHhc---------------------------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHH
Confidence 542 2222333333 1236899999942 2 22 222333211100
Q ss_pred -----------------------------------------------cccccccceEEEEeccc-----cccc-------
Q 000107 726 -----------------------------------------------TNFRPVPLEEYIKVGNA-----IYSK------- 746 (2191)
Q Consensus 726 -----------------------------------------------~~~RpvpL~e~i~~~~~-----~~~~------- 746 (2191)
...-|...+..+.+... .|..
T Consensus 257 ~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~ 336 (644)
T 1z3i_X 257 KKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP 336 (644)
T ss_dssp HHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG
T ss_pred HHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 00111111111111110 0000
Q ss_pred ------------hhhHHHHHHHhhc-------------cC---------------------CCChhHHHHHHHHHH-hcC
Q 000107 747 ------------KMDVVRTILTAAN-------------LG---------------------GKDPDHIVELCDEVV-QEG 779 (2191)
Q Consensus 747 ------------~~~~~r~l~~~~~-------------~~---------------------~~d~d~l~~Ll~e~~-~~g 779 (2191)
....+..+.+... .. ..+...+..++.... ..+
T Consensus 337 ~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 337 VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCC
Confidence 0000000000000 00 000112233333332 247
Q ss_pred CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH
Q 000107 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 780 ~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~ 859 (2191)
.++||||..+..++.++..|... +..+..+||+++..+|.
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~----------------------------------------g~~~~~l~G~~~~~~R~ 456 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNR----------------------------------------RYLYVRLDGTMSIKKRA 456 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----------------------------------------TCCEEEECSSCCHHHHH
T ss_pred CEEEEEEccHHHHHHHHHHHHHC----------------------------------------CCCEEEEeCCCCHHHHH
Confidence 89999999999877766655321 12377899999999999
Q ss_pred HHHHHhhcCCc---eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 860 VVETCYRKGLV---RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 860 ~Ve~~Fr~G~i---kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.+++.|++|.. .+|++|.+++.|+|++++.+||.++.+ .++..|.|++||++|.|......+|.++...
T Consensus 457 ~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~----wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 457 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD----WNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC----SSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC----CCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999865 489999999999999999999876654 3889999999999999987777788777654
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=230.40 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
+...+......+.++||||+|++.++.++..|.+. +..+.
T Consensus 428 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------------------------------------gi~~~ 467 (664)
T 1c4o_A 428 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----------------------------------------GIRAR 467 (664)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEE
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCce
Confidence 34445555567889999999999999998887542 11378
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCcccCcccccccccccCCCCCCCceEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
++||+|++.+|..+++.|+.|.++|||||+++++|+|+|++++||++.. .| -+.+..+|+||+|||||.+ .|.|
T Consensus 468 ~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~ 543 (664)
T 1c4o_A 468 YLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNA---RGEV 543 (664)
T ss_dssp EECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCS-GGGSHHHHHHHHGGGTTST---TCEE
T ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccC-CCCCHHHHHHHHCccCcCC---CCEE
Confidence 8999999999999999999999999999999999999999998887653 11 1337789999999999997 8999
Q ss_pred EEEeChhh
Q 000107 926 MLICKPEE 933 (2191)
Q Consensus 926 ill~~~~e 933 (2191)
++++++.+
T Consensus 544 i~~~~~~~ 551 (664)
T 1c4o_A 544 WLYADRVS 551 (664)
T ss_dssp EEECSSCC
T ss_pred EEEEcCCC
Confidence 99998754
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-18 Score=219.37 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=109.5
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ +||++|..+++. +++|+ |..+.||+|||++|.+|++...+ .|..++|++||+.||.|.++++..++..+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~--LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAV--LHEGK--IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHH--HHTTS--EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhccc--ccCCc--eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 799 999999999987 88888 99999999999999999975554 4778999999999999999999999999999
Q ss_pred eEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCC---ccceEEEccccccc
Q 000107 600 HVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLS---EIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~---~l~lVVIDEaH~l~ 655 (2191)
+|..++|+.... ....+++|+|+||+.+ .++++..+ ....++ .+.++||||+|.+.
T Consensus 150 sv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999876421 1112579999999998 67776532 123567 89999999999876
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-17 Score=215.24 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
+...+......+.++||||+|++.|+.++..|.+. +..+.
T Consensus 434 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------------------------------------gi~~~ 473 (661)
T 2d7d_A 434 LIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI----------------------------------------GIKVN 473 (661)
T ss_dssp HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEE
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCeE
Confidence 33445555556789999999999999998887542 11278
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCcccCcccccccccccCCCCCCCceEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
++||++++.+|..+++.|+.|.++|||||+++++|+|+|++++||.+.. .| -+.+..+|+||+|||||.+ .|.|
T Consensus 474 ~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~ 549 (661)
T 2d7d_A 474 YLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNA---EGRV 549 (661)
T ss_dssp EECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCT-TTTSHHHHHHHHHTTTTST---TCEE
T ss_pred EEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccccc-CCCCHHHHHHHhCcccCCC---CCEE
Confidence 8999999999999999999999999999999999999999998887653 11 1237789999999999985 8999
Q ss_pred EEEeChhh
Q 000107 926 MLICKPEE 933 (2191)
Q Consensus 926 ill~~~~e 933 (2191)
++++++.+
T Consensus 550 i~~~~~~~ 557 (661)
T 2d7d_A 550 IMYADKIT 557 (661)
T ss_dssp EEECSSCC
T ss_pred EEEEeCCC
Confidence 99998754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=191.62 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=123.7
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC----EEEEEchhHHHHHHHHHHHHHH
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK----MALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~----kaL~I~P~raLA~q~~~~l~~l 593 (2191)
...+...++++|.++++. +..|++++++||||||||+++.++++......+. +++++.|+++++.|+++.+...
T Consensus 55 ~~~~~~p~~~~q~~~i~~--i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 55 QERELLPVKKFESEILEA--ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHHHTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHhcCChHHHHHHHHHH--HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 333444679999999987 8999999999999999999999999887766544 8999999999999999888765
Q ss_pred hh-ccCCeEEEEeccCCCCCC-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 594 LE-PLGRHVRSYYGNQGGGSL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 594 ~~-~lg~~V~~~~G~~~~~~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
+. .++..++.-. ...... ..+++|+||||+++..++.. .++++++|||||+|.+ +...+..+..++
T Consensus 133 ~~~~~~~~~g~~~--~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~-----~~~~~~~~~~l~ 200 (235)
T 3llm_A 133 RGEEPGKSCGYSV--RFESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER-----DINTDFLLVVLR 200 (235)
T ss_dssp TTCCTTSSEEEEE--TTEEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC-----CHHHHHHHHHHH
T ss_pred hccccCceEEEee--chhhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC-----CcchHHHHHHHH
Confidence 44 3444444221 111112 25688999999998887754 4889999999999984 233333333333
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 672 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
.+... .++.|+|+||||+++.. +++|++.
T Consensus 201 ~i~~~--------------------~~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 201 DVVQA--------------------YPEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp HHHHH--------------------CTTSEEEEEECSSCCHH-HHHHTTS
T ss_pred HHHhh--------------------CCCCeEEEEecCCCHHH-HHHHcCC
Confidence 33211 24689999999998644 8888864
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=189.12 Aligned_cols=136 Identities=19% Similarity=0.271 Sum_probs=99.6
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHHHH-HHHHHHH
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSICAE-KAEHLEV 592 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA~q-~~~~l~~ 592 (2191)
..+...|+++|.++++. ++.++++++.+|||+|||+++.++++..+.. .+.++||++|+++|+.| ..+.+..
T Consensus 28 ~~~~~~l~~~Q~~~i~~--~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQP--ALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CSCCCCCCHHHHHHHHH--HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred ccCCCCchHHHHHHHHH--HhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 34556899999999986 8889999999999999999999998876654 26789999999999999 6666776
Q ss_pred HhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhh----cCCCCccceEEEccccccccc
Q 000107 593 LLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLE----EGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 593 l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~----~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
+... ++++..++|+..... ...+.+|+|+||+++..++.+... ...+.++++|||||+|++.+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 6543 778888877654321 112478999999998877764221 145788999999999999764
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=175.53 Aligned_cols=128 Identities=23% Similarity=0.354 Sum_probs=103.4
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... ..++..+||+|++.+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----------------------------------------KFTVSAIYSDLPQQE 68 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCCEEEEECCCCHHH
Confidence 4579999999999999988877541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH-
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK- 936 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~- 936 (2191)
|..+++.|++|.++|||||+++++|+|+|++.+||+++.+. +..+|.||+|||||.| ..|.|++++.+.+...
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~----~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 142 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA----NKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 142 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCS----SGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCC----CHHHHHHHhcccccCC--CCceEEEEEcchHHHHH
Confidence 99999999999999999999999999999999999877654 8899999999999999 7899999998876544
Q ss_pred --HHhhhccCCCCcccc
Q 000107 937 --IMGLLNESCPPLHSC 951 (2191)
Q Consensus 937 --~~~ll~~~l~~l~S~ 951 (2191)
+.+++...++++.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 143 RELEKFYSTQIEELPSD 159 (165)
T ss_dssp HHHHHHSSCCCEECCSC
T ss_pred HHHHHHHccCccccCcc
Confidence 445566555555443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=182.90 Aligned_cols=115 Identities=26% Similarity=0.449 Sum_probs=100.6
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..++.++..|... +..+.++||+|++.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----------------------------------------GHPAQALHGDLSQGE 69 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----------------------------------------TCCEEEECSSSCHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCCEEEEECCCCHHH
Confidence 4689999999999999988877542 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.|++++++.+...+
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~----~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~~~ 143 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPD----RAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 143 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCS----SHHHHHHHHTTBCCCC----BEEEEEECGGGHHHH
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCc----CHHHHHHHhcccCCCC--CCCeEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999987765 8899999999999999 68999999998775444
Q ss_pred H
Q 000107 938 M 938 (2191)
Q Consensus 938 ~ 938 (2191)
.
T Consensus 144 ~ 144 (212)
T 3eaq_A 144 E 144 (212)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=173.16 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=101.8
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +..+..+||+|++.+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----------------------------------------GYPCDKIHGGMIQED 73 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 4579999999999999988877541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +..+|.||+||+||.| ..|.|++++.+.+...+
T Consensus 74 r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 74 RFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPL----EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFL 147 (163)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCS----SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHH
T ss_pred HHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCC----CHHHHHHhccccCcCC--CCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999876654 8899999999999999 68999999998776554
Q ss_pred Hh
Q 000107 938 MG 939 (2191)
Q Consensus 938 ~~ 939 (2191)
.+
T Consensus 148 ~~ 149 (163)
T 2hjv_A 148 AD 149 (163)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=177.88 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=98.0
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++.++||+|++.+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----------------------------------------GHQVSLLSGELTVEQ 72 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----------------------------------------TCCEEEECSSCCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 3579999999999999888777431 234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC--CCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI--GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~--g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+ .....+..+|.||+|||||.| ..|.|++++.+.+..
T Consensus 73 R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 73 RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELP 150 (175)
T ss_dssp HHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHH
T ss_pred HHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEccchHH
Confidence 9999999999999999999999999999999999987654 122258889999999999998 789999999987755
Q ss_pred HHHh
Q 000107 936 KIMG 939 (2191)
Q Consensus 936 ~~~~ 939 (2191)
.+.+
T Consensus 151 ~~~~ 154 (175)
T 2rb4_A 151 SLMK 154 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=189.60 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=115.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
+|+++|.++++. ++.+++.++++|||+|||+++.+++...+...++++||++|+++|+.|+.+++.+++...+..+..
T Consensus 113 ~l~~~Q~~ai~~--~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFE--GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHH--HHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHH--HHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 799999999986 777788899999999999999888777666555699999999999999999999886655567777
Q ss_pred EeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCC
Q 000107 604 YYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682 (2191)
Q Consensus 604 ~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~ 682 (2191)
++|+.... ......+|+|+||+.+. +. ....+.++++|||||+|.+.+ ..++.++.++
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~------------ 249 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGL------------ 249 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC------------
T ss_pred EeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh------------
Confidence 77765332 12256799999998742 22 223577899999999999863 2344333322
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 683 SGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 683 ~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
....++++||||++|
T Consensus 250 --------------~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 250 --------------NNCMFKFGLSGSLRD 264 (282)
T ss_dssp --------------TTCCEEEEECSSCCT
T ss_pred --------------hcCCeEEEEeCCCCC
Confidence 235799999999876
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=174.07 Aligned_cols=110 Identities=26% Similarity=0.338 Sum_probs=98.3
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++..+||+|++.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----------------------------------------NFPAIAIHRGMPQEE 69 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCEEEEECCCCHHH
Confidence 4579999999999999988887541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.+++++.+.+
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE----DSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCS----SHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCC----CHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 99999999999999999999999999999999999877654 8899999999999999 6899999998753
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-16 Score=174.78 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=89.1
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+++..|+.++..|... +..+..+||+|++.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------------------------------------g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------------------------------------GYACTSIHGDRSQRD 84 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------------------------------------TCCEEEEC-------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------------------------------------CCceEEEeCCCCHHH
Confidence 4679999999999999988877431 234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhH---
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV--- 934 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~--- 934 (2191)
|..+++.|++|.++|||||+++++|+|+|++.+||+++.+. +..+|.||+|||||.| ..|.|++++++.+.
T Consensus 85 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~----s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 158 (185)
T 2jgn_A 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS----DIEEYVHRIGRTGRVG--NLGLATSFFNERNINIT 158 (185)
T ss_dssp -CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCS----SHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGH
T ss_pred HHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCC----CHHHHHHHccccCCCC--CCcEEEEEEchhhHHHH
Confidence 99999999999999999999999999999999999877654 8899999999999999 68999999998664
Q ss_pred HHHHhhhcc
Q 000107 935 KKIMGLLNE 943 (2191)
Q Consensus 935 ~~~~~ll~~ 943 (2191)
+.+.+++..
T Consensus 159 ~~l~~~l~~ 167 (185)
T 2jgn_A 159 KDLLDLLVE 167 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344445543
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-16 Score=186.62 Aligned_cols=114 Identities=26% Similarity=0.464 Sum_probs=96.7
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||++++.++.++..|.. ..+.+..+||+|++.+
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~----------------------------------------~g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLR----------------------------------------LGHPAQALHGDMSQGE 66 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHT----------------------------------------TTCCEEEECSCCCTHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh----------------------------------------CCCCEEEEeCCCCHHH
Confidence 368999999999999988877643 1234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|||+|++++||+++.+. +...|.||+|||||.| ..|.|++|+++.+...+
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~----s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD----RAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 140 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS----STTHHHHHHTCCC-------CEEEEEECSSTHHHH
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC----CHHHHHHHccCcCcCC--CCceEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999987765 8889999999999999 67999999998765443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=173.32 Aligned_cols=109 Identities=22% Similarity=0.299 Sum_probs=94.7
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+++..++.++..|... ...+..+||+|++.+
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------g~~~~~lhg~~~~~~ 92 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK----------------------------------------GVEAVAIHGGKDQEE 92 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 4578999999999999988887542 123888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +..+|.||+||+||.| ..|.|++|+++.
T Consensus 93 R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~----~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 93 RTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE----EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCS----SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCC----CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999999877654 8899999999999999 689999999864
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=194.30 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=87.4
Q ss_pred cCCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 520 RGISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
.|| +++|+|.+++.. ..+..++++++.||||+|||++|+++++. .+++++|++||++|+.|+.+++.. +
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~----~~~~~~~~~~t~~l~~q~~~~~~~----l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ----LKKKVLIFTRTHSQLDSIYKNAKL----L 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH----HTCEEEEEESCHHHHHHHHHHHGG----G
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHHHh----c
Confidence 467 899999998653 23567899999999999999999999875 378999999999999999987765 3
Q ss_pred CCeEEEEeccCC---------------------------------------------------CCCCCCCCceEEEchHH
Q 000107 598 GRHVRSYYGNQG---------------------------------------------------GGSLPKDTSVAVCTIEK 626 (2191)
Q Consensus 598 g~~V~~~~G~~~---------------------------------------------------~~~l~~~~~IiV~TpEk 626 (2191)
++++..+.|... ........+|+|||+..
T Consensus 75 ~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~ 154 (540)
T 2vl7_A 75 GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPY 154 (540)
T ss_dssp TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETHH
T ss_pred CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHH
Confidence 444444333210 00011346999999999
Q ss_pred HHHH-HHHhhh----cCCCCccceEEEcccccccc
Q 000107 627 ANSL-VNRMLE----EGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 627 l~~L-l~~l~~----~~~L~~l~lVVIDEaH~l~d 656 (2191)
+.+- .++... ...+.+..+|||||+|.+.+
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 155 LFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp HHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 7653 332211 11356789999999999943
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-16 Score=174.13 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=98.3
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++.++||+|++.+
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~ 68 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----------------------------------------GINNCYLEGEMVQGK 68 (170)
Confidence 3578999999999999888777431 223788999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.+++++.+.+...
T Consensus 69 r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----SGDTYLHRIGRTARAG--RKGTAISLVEAHDHLL 141 (170)
Confidence 99999999999999999999999999999999999876543 8889999999999998 6899999998866444
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=167.13 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=94.0
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe-E
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH-V 601 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~-V 601 (2191)
..|+++|.+++.. ++.++++++++|||+|||+++..++.. .+.++||++|+++|+.|..+.+.+ +++. +
T Consensus 92 ~~l~~~Q~~ai~~--~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v 161 (237)
T 2fz4_A 92 ISLRDYQEKALER--WLVDKRGCIVLPTGSGKTHVAMAAINE----LSTPTLIVVPTLALAEQWKERLGI----FGEEYV 161 (237)
T ss_dssp CCCCHHHHHHHHH--HTTTSEEEEEESSSTTHHHHHHHHHHH----SCSCEEEEESSHHHHHHHHHHHGG----GCGGGE
T ss_pred CCcCHHHHHHHHH--HHhCCCEEEEeCCCCCHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeE
Confidence 3799999999986 888889999999999999999877654 378899999999999999988766 3677 7
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
..+.|+.. ...+|+|+|++.+......+ ...+++|||||+|++.+.
T Consensus 162 ~~~~g~~~-----~~~~i~v~T~~~l~~~~~~~-----~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 162 GEFSGRIK-----ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp EEESSSCB-----CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEECSSCCCTT
T ss_pred EEEeCCCC-----CcCCEEEEeHHHHHhhHHHh-----cccCCEEEEECCccCCCh
Confidence 77776542 35689999999876554432 245899999999999765
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=170.10 Aligned_cols=132 Identities=18% Similarity=0.088 Sum_probs=99.5
Q ss_pred CCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 521 GISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
|| +++|.|.+.+.. ..+..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 44 689999997653 23557999999999999999999999987 478999999999999999988887766667
Q ss_pred CeEEEEeccCCC---C----------------------------------------------------CCCCCCceEEEc
Q 000107 599 RHVRSYYGNQGG---G----------------------------------------------------SLPKDTSVAVCT 623 (2191)
Q Consensus 599 ~~V~~~~G~~~~---~----------------------------------------------------~l~~~~~IiV~T 623 (2191)
+++..+.|...- . ......+|+|||
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 888777663210 0 001246999999
Q ss_pred hHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 624 pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+..+.+...+. ......+..+|||||||.+.+ .+
T Consensus 156 ~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 156 YPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp THHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GG
T ss_pred chHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HH
Confidence 99976653321 112224678999999999988 44
|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=152.06 Aligned_cols=189 Identities=10% Similarity=0.063 Sum_probs=135.9
Q ss_pred ceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCC
Q 000107 1489 INAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSS 1568 (2191)
Q Consensus 1489 i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~ 1568 (2191)
+.++++...+..+++.+...+.++||+|+.+.. ...-.+.++.||.++ .+|.+... .. .
T Consensus 3 ~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~----~~~~~l~liqla~~~-~~~lid~~-~l---~------------ 61 (375)
T 1yt3_A 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTR----TYYPQLGLIQLFDGE-HLALIDPL-GI---T------------ 61 (375)
T ss_dssp CEEECSHHHHHHHHHHHTTSSEEEEEEEEECCS----CSSCEEEEEEEECSS-CEEEECGG-GC---S------------
T ss_pred eEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCC----cCCCceEEEEEecCC-cEEEEeCC-CC---C------------
Confidence 345666778888898887778899999976321 111258888998744 34443311 00 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccC
Q 000107 1569 DKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPV 1647 (2191)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1647 (2191)
.+..|+++|+++.+.|++||+|+|+.+|.+ +|+.+.+
T Consensus 62 ----------------~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~-------------------------- 99 (375)
T 1yt3_A 62 ----------------DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP-------------------------- 99 (375)
T ss_dssp ----------------CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSS--------------------------
T ss_pred ----------------ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCc--------------------------
Confidence 024588899999999999999999999976 7876542
Q ss_pred CCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1648 HLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1648 ~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.|||++|+||++|. ..++ |..++.++++....+.. +...|.. ++...+..||+.||.+++.||..|..+|
T Consensus 100 ----~fDt~lAa~lL~~~-~~~~---L~~L~~~~l~~~l~K~~-~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 100 ----LIDTQILAAFCGRP-MSWG---FASMVEEYSGVTLDKSE-SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp ----EEEHHHHHHHTTCC-TTCC---HHHHHHHHHCCCCCCTT-TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ----EEEcHHHHHHcCCC-CChh---HHHHHHHHcCCCCCCCc-ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999993 4565 55556666654432211 1223432 3444578899999999999999999999
Q ss_pred HHHHHHHH-HHhhhhhHHHHHHHH
Q 000107 1727 VSEELIEA-LLNIEIPLVNVLADM 1749 (2191)
Q Consensus 1727 ~~~~L~~l-~~~iEmpl~~vLa~M 1749 (2191)
.+.++.++ |.++|||+..+...+
T Consensus 171 ~~~g~~~l~~~e~E~pl~~~~~~~ 194 (375)
T 1yt3_A 171 EASGWLPAALDECRLMQMRRQEVV 194 (375)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCcHHHHHHHHHHHHhhcccCC
Confidence 99888888 999999999887543
|
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-11 Score=147.97 Aligned_cols=174 Identities=9% Similarity=0.040 Sum_probs=128.3
Q ss_pred CCCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhcc
Q 000107 1486 KGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIY 1565 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~ 1565 (2191)
..++.+|++.+.+..+++.+...+.++||+|+.+. ....-.+++|+||+.+ .+|+|......
T Consensus 107 ~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~----~~~~~~l~lIQLa~~~-~~~lidpl~l~------------- 168 (428)
T 3saf_A 107 ETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSY----RSFLGLTCLMQISTRT-EDFIIDTLELR------------- 168 (428)
T ss_dssp GSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECT----TCSSCEEEEEEEECSS-CEEEEETTTTG-------------
T ss_pred CCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCC----CCCCCeEEEEEEEeCC-cEEEEEeccch-------------
Confidence 35567899999999999999999999999998532 1112258899999866 45665542110
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHH-hcCcccccccCcccccccccccccccccccc
Q 000107 1566 GSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLK-HAAVSIQRFGGLNLVGTSLGLENVGSSFLLL 1644 (2191)
Q Consensus 1566 ~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2191)
..+..|+++|+++.+.||+||+|+|+.+|. .+|+.+.+
T Consensus 169 ------------------~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~----------------------- 207 (428)
T 3saf_A 169 ------------------SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVN----------------------- 207 (428)
T ss_dssp ------------------GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-----------------------
T ss_pred ------------------hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCc-----------------------
Confidence 012357889999999999999999999995 77876542
Q ss_pred ccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCch-hhhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1645 SPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRW-KNQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1645 ~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~-~~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.||||+|+|+++++ .+ +|+.++.++++.+..+... ...| ...+...+..||+.||.+++.||..|.
T Consensus 208 -------~fDT~lAa~lL~~~--~~---gL~~Lv~~~Lg~~l~K~~~-~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~ 274 (428)
T 3saf_A 208 -------MFDTHQAARLLNLG--RH---SLDHLLKLYCNVDSNKQYQ-LADWRIRPLPEEMLSYARDDTHYLLYIYDKMR 274 (428)
T ss_dssp -------EEEHHHHHHHTTCS--CC---SHHHHHHHHHCCCCCCTTT-TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred -------eeechhHHHHhCCC--CC---CHHHHHHHHcCCCCCcccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999985 35 4666677777765432222 2234 344556677899999999999999999
Q ss_pred HHHHHHHH
Q 000107 1724 KLLVSEEL 1731 (2191)
Q Consensus 1724 ~~L~~~~L 1731 (2191)
.+|.+.+.
T Consensus 275 ~~L~~~g~ 282 (428)
T 3saf_A 275 LEMWERGN 282 (428)
T ss_dssp HHHHHHTT
T ss_pred HHHHhcCC
Confidence 99987653
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=138.18 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+..++.+....+.++||||.++..++.++..|.... +..
T Consensus 99 ~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---------------------------------------g~~ 139 (271)
T 1z5z_A 99 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---------------------------------------NTE 139 (271)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---------------------------------------CSC
T ss_pred HHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---------------------------------------CCc
Confidence 45566777777778999999999998887777765421 112
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcC-Cce-EEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 846 VAYHHAGLTVEEREVVETCYRKG-LVR-VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G-~ik-VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
+..+||+++..+|..+++.|++| .++ +|++|.++++|+|++++.+||.++.+. ++..|.|++||++|.|.....
T Consensus 140 ~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~w----np~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 140 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW----NPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCS----CTTTC--------------CC
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCC----ChhHHHHHHHhccccCCCCce
Confidence 66799999999999999999998 777 789999999999999999999876654 888999999999999976666
Q ss_pred EEEEEeChh
Q 000107 924 ESMLICKPE 932 (2191)
Q Consensus 924 e~ill~~~~ 932 (2191)
.+|.++...
T Consensus 216 ~v~~li~~~ 224 (271)
T 1z5z_A 216 IVHKLISVG 224 (271)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeeCC
Confidence 667666654
|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=132.71 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred CCCceeccCcccHH----HHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccc
Q 000107 1486 KGPINAINASGGFD----CFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDR 1561 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~----~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~ 1561 (2191)
.|+|.++++...+. .+++.+...+.++||+|..+.-. ....-.+.++.+|+.++.+||+++.+.. .
T Consensus 14 ~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~--~~~~~~~~~iqla~~~~~~~~i~~~~~~---~----- 83 (208)
T 2e6m_A 14 PGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYK--PGKRSRVAVIQLCVSESKCYLFHISSMS---V----- 83 (208)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC-----CCSCCCCCEEEEECSSSEEEEECGGGCS---S-----
T ss_pred CCcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCC--CCCCCCeEEEEEecCCCeEEEEECcccc---c-----
Confidence 46788999988887 55566666677999998753200 0112257889999876788999874210 0
Q ss_pred hhccCCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCcccccccccccccccc
Q 000107 1562 FLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSS 1640 (2191)
Q Consensus 1562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~ 1640 (2191)
..+.|+++|+++.+.|++||+|+|+.+|++ +|+.+.+
T Consensus 84 -----------------------~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~------------------- 121 (208)
T 2e6m_A 84 -----------------------FPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES------------------- 121 (208)
T ss_dssp -----------------------CCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCS-------------------
T ss_pred -----------------------chHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCC-------------------
Confidence 013588899999999999999999999987 7886653
Q ss_pred ccccccCCCCccch-HHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHH-hhccCchhh-hhHHHHhhhHHHHHHHHHH
Q 000107 1641 FLLLSPVHLKDGID-MCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAA-ANRSGRWKN-QMRRAAHNGCCRRVAQTRA 1717 (2191)
Q Consensus 1641 ~~~~~~~~~~~~~D-t~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~-~~~~g~~~~-~~~~~~~~ya~~Da~~t~~ 1717 (2191)
.|| |++|+||++| ...++ |..++.++++....+. ..+...|.. ++...+..||+.||.++++
T Consensus 122 -----------~fDlt~lAayll~~-~~~~~---L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~ 186 (208)
T 2e6m_A 122 -----------FVELTDVANEKLKC-AETWS---LNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLI 186 (208)
T ss_dssp -----------EEEHHHHHHHHTTC-CCCCC---HHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred -----------EEEHHHHHHHHccC-CCChh---HHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 489 9999999999 44565 4455555554332100 012344543 4445578899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000107 1718 LCSVLWKLLVSEELIEA 1734 (2191)
Q Consensus 1718 L~~~L~~~L~~~~L~~l 1734 (2191)
|+..|.++|++.+....
T Consensus 187 L~~~L~~~L~~~~~~~~ 203 (208)
T 2e6m_A 187 IYQKLGNLGDTVQVFAL 203 (208)
T ss_dssp HHHHHHTCC--------
T ss_pred HHHHHHhccchhhhhhh
Confidence 99999999987765543
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-11 Score=143.75 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=140.3
Q ss_pred CccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhccc
Q 000107 1020 KLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQV 1099 (2191)
Q Consensus 1020 ~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~ 1099 (2191)
+.+.+|++|+.++..||++.++..+...|+.. .++..+|.+++-. +++..+..+.+
T Consensus 7 ~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~------~~~~~lL~ils~a-----~Ef~~i~vR~~------------- 62 (328)
T 3im1_A 7 EIISTLSNGLIASHYGVSFFTIQSFVSSLSNT------STLKNMLYVLSTA-----VEFESVPLRKG------------- 62 (328)
T ss_dssp CCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTT------CCHHHHHHHHHTC-----GGGGGSCCCTT-------------
T ss_pred CCccCCchhHHHHHHCCCHHHHHHHHHHhccc------CCHHHHHHHhccH-----HHHHhcccCcc-------------
Confidence 45899999999999999999988877777542 1333444444432 12111100000
Q ss_pred CCCHHHHHHHhcCCCccccccccccccCccchhhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 000107 1100 GVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFK 1179 (2191)
Q Consensus 1100 Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~ 1179 (2191)
.+..+.++....+..... + .... + ..+++.++|++|+++.++.. .|
T Consensus 63 --E~~~l~~L~~~~~~~~~~--------------~------~~~~--~------~~~K~~lLLqa~isr~~l~~---~l- 108 (328)
T 3im1_A 63 --DRALLVKLSKRLPLRFPE--------------H------TSSG--S------VSFKVFLLLQAYFSRLELPV---DF- 108 (328)
T ss_dssp --HHHHHHHHHTTSSSCCCT--------------T------SCSS--S------HHHHHHHHHHHHHHTCCCCH---HH-
T ss_pred --hHHHHHHHHHhCCCcccc--------------c------CCCC--C------HHHHHHHHHHHHHCCCCCCh---HH-
Confidence 112233343333221100 0 0000 0 23459999999999998865 33
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHH
Q 000107 1180 VARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIA 1259 (2191)
Q Consensus 1180 v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la 1259 (2191)
.||...+.++|.|+..++..+|...||.. ...+-.+.+++.+|++++..||++||||++.+||+|+++|++|+.||+
T Consensus 109 --~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~ 185 (328)
T 3im1_A 109 --QNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIM 185 (328)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCCCCHHHHh
Confidence 79999999999999999999999999988 888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH
Q 000107 1260 EASISEIVKAL 1270 (2191)
Q Consensus 1260 ~a~~~~l~~~l 1270 (2191)
.++++++..++
T Consensus 186 ~~~~~e~~~ll 196 (328)
T 3im1_A 186 ALEDEERDEIL 196 (328)
T ss_dssp HSCHHHHHHHC
T ss_pred cCCHHHHHhHh
Confidence 99999999886
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-09 Score=128.46 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=112.1
Q ss_pred eccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCC-CccccccccccccCccchhhhhhccccCCCcc
Q 000107 1067 STPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGA-PMRISSKLRDSTKGLHGKLEYRLGITSNNMLS 1145 (2191)
Q Consensus 1067 vtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1145 (2191)
+.|++.|.+.. +||..+.++..+.+.+.... ++.-+.++.... .+.. -..|.+....-.++.+...+.-.. ..
T Consensus 13 l~~t~lGriaS--~yYi~~~T~~~f~~~l~~~~--~~~~lL~ils~a~EF~~-i~vR~~E~~~l~~L~~~~~~~~~~-~~ 86 (339)
T 2q0z_X 13 VAPLNLGMIAA--YYYINYTTIELFSMSLNAKT--KVRGLIEIISNAAEYEN-IPIRHHEDNLLRQLAQKVPHKLNN-PK 86 (339)
T ss_dssp --------------------------------C--CHHHHHHHHHTSGGGTT-CCCCTTCHHHHHHHHHHSSSCCSS-CC
T ss_pred eccCcHHHHHH--HHCCCHHHHHHHHHHhcccC--CHHHHHHHHhchHHHhc-CCCCcchHHHHHHHHHhCCCcccc-CC
Confidence 56777777777 89999999988876665532 222233332221 1110 011111111111222111110000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Q 000107 1146 DAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFG 1225 (2191)
Q Consensus 1146 ~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~G 1225 (2191)
.+ . ..+++.++|++|+++.++. + .| .+|...+.++|.|+..++..+|...||......+-.|.++|.+|
T Consensus 87 ~~---~--~~~K~~lLLqa~isr~~l~-~--~l---~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~ 155 (339)
T 2q0z_X 87 FN---D--PHVKTNLLLQAHLSRMQLS-A--EL---QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQA 155 (339)
T ss_dssp TT---C--HHHHHHHHHHHHHTTCCCC-H--HH---HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHT
T ss_pred CC---C--HHHHHHHHHHHHHcCCCCC-h--HH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 01 1 2356999999999999886 4 55 79999999999999999999999999988888899999999999
Q ss_pred CchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHh
Q 000107 1226 VRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271 (2191)
Q Consensus 1226 v~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~ 1271 (2191)
++++..||++||+|++.+||+|+++|++|+.+|+.++++++..+|.
T Consensus 156 ~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~ 201 (339)
T 2q0z_X 156 MWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQ 201 (339)
T ss_dssp CCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHC
T ss_pred cCCCCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998873
|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=133.40 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=123.3
Q ss_pred CCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccC
Q 000107 1487 GPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYG 1566 (2191)
Q Consensus 1487 ~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~ 1566 (2191)
+++.++++...+..+++.+.....++||+|+.+.. ...-.+.++.||+.+ .+|.+... .. .
T Consensus 85 ~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~----~~~~~l~liQla~~~-~~ylid~l-~l---~---------- 145 (410)
T 2hbj_A 85 SVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYR----SYYGIVCLMQISTRE-RDYLVDTL-KL---R---------- 145 (410)
T ss_dssp CCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSS----SSSCEEEEEEEECSS-CEEEEETT-TT---T----------
T ss_pred CCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCc----CCCCcEEEEEEEECC-cEEEEech-hh---h----------
Confidence 34667777788888899887778899999875321 112258888999744 45555421 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccc
Q 000107 1567 SSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLS 1645 (2191)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1645 (2191)
..+..|+++|+++.+.||+||+|+|+.+|.+ +|+.+.+
T Consensus 146 -----------------~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~------------------------ 184 (410)
T 2hbj_A 146 -----------------ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG------------------------ 184 (410)
T ss_dssp -----------------TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS------------------------
T ss_pred -----------------hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCC------------------------
Confidence 0123478899999999999999999999976 7876543
Q ss_pred cCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1646 PVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1646 ~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
.|||++|+|||++. .++ |..++.++++....+.. +...|.. .+...+..||+.||.+++.||..|..
T Consensus 185 ------~fDt~lAa~LL~~~--~~~---L~~L~~~~lg~~l~K~~-~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 185 ------LFDTYHASKAIGLP--RHS---LAYLLENFANFKTSKKY-QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp ------EEEHHHHHHHHTCS--CCS---HHHHHHHHSCCCCCCTT-TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ------EEEcHHHHHHhCCC--ccC---HHHHHHHHcCCCCCccc-cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999986 454 55566777665432111 1224443 44446789999999999999999999
Q ss_pred HHHHHHHHH
Q 000107 1725 LLVSEELIE 1733 (2191)
Q Consensus 1725 ~L~~~~L~~ 1733 (2191)
+|.+.+++.
T Consensus 253 ~L~~~g~~~ 261 (410)
T 2hbj_A 253 KLIESNKLA 261 (410)
T ss_dssp HHHHTTCHH
T ss_pred HHHhcCchH
Confidence 998766543
|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=126.38 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceeccCcccHHHHHHHHhhC-CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccC
Q 000107 1488 PINAINASGGFDCFLDRWEAT-HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYG 1566 (2191)
Q Consensus 1488 ~i~~v~~~~~~~~~l~~~~~~-~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~ 1566 (2191)
...++++.+.+..+++.+... +.++||+|+.+.. ...-.++++.||+.++.+|||... .. +. .
T Consensus 17 ~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~----~~~~~l~liQla~~~~~~~lid~l-~~-----~~-~----- 80 (440)
T 3cym_A 17 VPNVIDTLPAFRDYCSELASSHGSLAADAERASGF----RYGHEDWLVQFKRDGAGIGLLDPQ-AL-----AA-A----- 80 (440)
T ss_dssp CCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTT----SSSCCEEEEEEEEETTEEEEECHH-HH-----HH-T-----
T ss_pred CCEeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCC----CCCCCEEEEEEEECCCcEEEEEcC-Cc-----cc-c-----
Confidence 335666778888889888776 7799999876321 112258899999877778887420 00 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCcccccccccccccccccccccc
Q 000107 1567 SSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSP 1646 (2191)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1646 (2191)
...+..|+++|+++ .|++||+|+|+.+|..+|+.+..
T Consensus 81 ----------------~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~~~gi~~~~------------------------- 117 (440)
T 3cym_A 81 ----------------GADWNDFNRAVGDA--VWILHDSLQDLPGFDELGMEPQR------------------------- 117 (440)
T ss_dssp ----------------TCCHHHHHHHHTTC--EEEESSHHHHHHHHHHHTCCCCE-------------------------
T ss_pred ----------------ccCHHHHHHHHCCC--CEEEEcCHHHHHHHHHcCCcCCc-------------------------
Confidence 00135688899986 69999999999999877775442
Q ss_pred CCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000107 1647 VHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWKL 1725 (2191)
Q Consensus 1647 ~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~~ 1725 (2191)
.|||++|+|||++. .++ |..++..+++....+.. +...|.. .+......||+.||.+++.||..|..+
T Consensus 118 -----~fDt~lAa~lL~~~--~~g---L~~L~~~~lg~~~~K~~-~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 118 -----LFDTEIAARLLGLK--RFG---LAAVTEHFLGLTLAKEH-SAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp -----EEEHHHHHHHTTCS--SCS---HHHHHHHHHCEECCCCC-TTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred -----eehHHHHHHHhCCC--CCC---HHHHHHHHhCCCccccc-ccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999983 565 55556666654432211 1223432 344467889999999999999999999
Q ss_pred HHHHHHHHHH
Q 000107 1726 LVSEELIEAL 1735 (2191)
Q Consensus 1726 L~~~~L~~l~ 1735 (2191)
|.+.++.+++
T Consensus 187 L~~~g~~~l~ 196 (440)
T 3cym_A 187 LKRQGKMEWA 196 (440)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCcHHHH
Confidence 9988776654
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-06 Score=111.82 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=69.5
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
+++|.|.+.+.. ..+..|+++++.||||+|||++|++|++..+...+.+++|++||++++.|+.+.+..+....++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 579999998752 125679999999999999999999999998877789999999999999999999988876666776
Q ss_pred EEEec
Q 000107 602 RSYYG 606 (2191)
Q Consensus 602 ~~~~G 606 (2191)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 66554
|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A | Back alignment and structure |
|---|
Probab=98.00 E-value=6.1e-05 Score=85.98 Aligned_cols=154 Identities=11% Similarity=0.145 Sum_probs=100.4
Q ss_pred hhCCeEEEEeeccCCcc---cCCCcc-ceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHH
Q 000107 1506 EATHEFYFDIHYDKHSE---ANSGVL-FEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEM 1581 (2191)
Q Consensus 1506 ~~~~~~afD~e~~~~~~---~~s~~~-~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1581 (2191)
.....++||+|+..... .....+ .++.-|.+|.++. ++.+.+. +.. +
T Consensus 44 ~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~-~~l~~l~-~~~--~------------------------- 94 (206)
T 1vk0_A 44 NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNL-CLFLRLP-KPF--H------------------------- 94 (206)
T ss_dssp HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSE-EEEEECC-SSC--C-------------------------
T ss_pred cCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCC-eEEEecc-ccC--C-------------------------
Confidence 44567999999863210 000111 2566677886554 6656652 110 0
Q ss_pred HHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccCCCCccchHH-HHH
Q 000107 1582 IKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC-IVS 1659 (2191)
Q Consensus 1582 ~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~-lAa 1659 (2191)
..+..|.++|+++++.|++|.+++|+..|++ +|+.+.+ .+|+. +|+
T Consensus 95 --~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~------------------------------~~Dl~~la~ 142 (206)
T 1vk0_A 95 --DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN------------------------------AINVGKLAA 142 (206)
T ss_dssp --GGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSS------------------------------EEEHHHHHH
T ss_pred --ccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCC------------------------------eeeHHHHHH
Confidence 0123478899999999999999999999976 5665443 58975 776
Q ss_pred HhcC-CCCCCCCchhHHHHHHHhhChHH-HHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1660 WILW-PDDERSSNPNLEKEVKKRLSSEA-AAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1660 wLL~-P~~~~~~l~~L~~~~~~~l~~e~-~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
-++. |..... +|..++..+++.+. .+.. +.+.|..++.+.+..||+.||.+.+.+|..|.+
T Consensus 143 ~~lg~~~~~~~---gL~~Lv~~~lg~~lK~k~~-~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 143 EARGTLVLEFL---GTRELAHRVLWSDLGQLDS-IEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHTCGGGGGC---CHHHHHHHHHCCCCHHHHH-HHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCc---cHHHHHHHHhCCcCCCCCc-ccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6553 322334 46667777777666 2222 344565588888999999999999999988753
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.99 E-value=7.3e-06 Score=108.65 Aligned_cols=72 Identities=24% Similarity=0.211 Sum_probs=56.3
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHH--HHHHHHHHHH-hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFV--AEILMLRRLI-STGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlv--ael~iL~~ll-~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.++|.+++.. ++.++.+++.||+|+|||++ +.+.++..+. ..+.++++++||..+|.++.+.+......+++
T Consensus 151 ~~~Q~~Ai~~--~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAV--ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHH--HHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHH--HhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999987 78899999999999999944 4455554332 24568999999999999998887766555543
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00068 Score=86.94 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHcCCCCCCHHHHHhhhhc--ccccC-CeEEEEcCCCCchhHHHHHHHHHHHHhcCC-EEEEEchhHHHHHHHHHHH
Q 000107 517 YKKRGISKLYPWQVECLHVD--GVLQR-RNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 517 l~~~Gi~~l~p~Q~eal~~~--~il~g-knlIi~APTGSGKTlvael~iL~~ll~~g~-kaL~I~P~raLA~q~~~~l 590 (2191)
|....|..|++-|.+++... .+..+ .++++.|+.|+|||.+. ..++..+...+. .+++++||...|.++.+.+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 45577899999999999751 12222 49999999999999876 455556666665 7999999988887765443
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00023 Score=66.91 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=49.6
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
+|.+||||+..-|.+|.++||+|++|||.+++++|..+. +++...|.+|+..||+
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~------------gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE------------GLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSS------------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcc------------CCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999973 5667789999999987
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00044 Score=90.86 Aligned_cols=62 Identities=21% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
.+++.|.+++.. ++.++.+++.||.|+|||++. ..++..+...+.++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~--~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQ--LAGHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHH--HTTCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 689999999986 778899999999999999875 34556666678899999999888876654
|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00065 Score=79.21 Aligned_cols=184 Identities=9% Similarity=0.014 Sum_probs=95.3
Q ss_pred CcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEE-e---CCc-----EEEEeCCCC-cccccccccchh
Q 000107 1494 ASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCW-E---NSP-----VYYVNLPKD-LWSDHRRKDRFL 1563 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~-~---~~~-----ayYi~l~~~-~~~~~~~~~~~~ 1563 (2191)
+...+..+...+.....+.||+|+++. .+...+|+.|++.. . ++. .|+.-+... ....+.. ...
T Consensus 23 ~~~~~~~l~~~l~~~~~vviD~ETTGl----~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~--~~~ 96 (235)
T 3v9w_A 23 DNAQLTGLCDRFRGFYPVVIDVETAGF----NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPE--ALA 96 (235)
T ss_dssp ------CHHHHTTTEEEEEEEEEESSS----CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHH--HHH
T ss_pred ccccccCchhcccCCcEEEEEEeCCCC----CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHH--HHH
Confidence 344455566777777889999999864 22345677776553 2 232 344333211 0000000 000
Q ss_pred ccCCCCCC-CCChhhHHHHHHHHHHHHHHhhcc-------CCccEEEechHHHHHHHHhc----CcccccccCccccccc
Q 000107 1564 IYGSSDKN-VLTPEHQLEMIKQRWKRIGEIMEK-------RDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTS 1631 (2191)
Q Consensus 1564 ~~~~~~~~-~~~~~~~~~~~~~~~~~L~~lLe~-------~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~ 1631 (2191)
.....+. .+...- .+.+.+..+.+++.+ .+..+|+||++||+.+|++. |+....+
T Consensus 97 -i~GIt~e~~v~~~~---~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~--------- 163 (235)
T 3v9w_A 97 -FNGIDPNDPDRGAV---SGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF--------- 163 (235)
T ss_dssp -HHCCCTTCGGGCCB---CHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE---------
T ss_pred -HhCCCHHHHHhcCC---CHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC---------
Confidence 0000000 000000 012344455555542 46789999999999998653 4422110
Q ss_pred cccccccccccccccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHH
Q 000107 1632 LGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRR 1711 (2191)
Q Consensus 1632 ~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~D 1711 (2191)
....++||+.+++++.|. ++ |..++..+ +.+. .+ ....+|..|
T Consensus 164 ----------------~~~~~~Dt~~la~~~~p~---~~---L~~l~~~~-gi~~------~~--------~~~H~Al~D 206 (235)
T 3v9w_A 164 ----------------HPFATFDTAALAGLALGQ---TV---LSKACQTA-GMDF------DS--------TQAHSALYD 206 (235)
T ss_dssp ----------------EEEEEEEHHHHHHHHHSC---CS---HHHHHHHH-TCCC------CT--------TTTTCHHHH
T ss_pred ----------------CCCcEEEhHHHHHHHhCC---CC---HHHHHHHc-CCCC------CC--------CCCcChHHH
Confidence 001358999999999884 33 44444332 2110 00 124578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000107 1712 VAQTRALCSVLWKLLVSEELIE 1733 (2191)
Q Consensus 1712 a~~t~~L~~~L~~~L~~~~L~~ 1733 (2191)
|.+|.+|+..+.+++.+.++++
T Consensus 207 A~~ta~l~~~l~~~l~~~~~~~ 228 (235)
T 3v9w_A 207 TERTAVLFCEIVNRWKRLGGWP 228 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999998887665543
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=87.75 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
+..+++.|.+|+.. ++.+..++|.||+|+|||.+..- ++..+.. .+.++++++|+...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~--~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKT--VLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHH--HHTCSEEEEECCTTSCHHHHHHH-HHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HhcCCCeEEECCCCCCHHHHHHH-HHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 45799999999976 66778899999999999988644 4445554 678999999999999998877754
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=87.16 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
+..|++.|.+|+.. ++.+..++|.||+|+|||.+..-.+ ..+.. .+.++++++|+...+.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~--~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSH--VLQRPLSLIQGPPGTGKTVTSATIV-YHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHH--HTTCSEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHH--HhcCCCEEEECCCCCCHHHHHHHHH-HHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46799999999986 6778889999999999998765443 33433 6889999999999999999887653
|
| >1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00055 Score=64.21 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.7
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEK 1303 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~~~ 1303 (2191)
+|+..||+..-|..|.++||.|+++||-+++++|..+ .++....|.+|++.|++++.++
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I------------~G~dE~~a~~l~~~A~~~l~~~ 66 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI------------EGLDEPTVEALRERAKNALATI 66 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS------------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhc------------cCCCHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999988 5678889999999999998654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=86.30 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
...+++.|.+|+.. ++.+...+|.||+|+|||.+.. .++..+.. .+.++++++|+...|.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~--~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKT--VLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHH--HHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHH--hccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45799999999976 6778889999999999998764 34455554 678999999999999888877654
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.015 Score=77.51 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=59.8
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhc--c
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEP--L 597 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~--l 597 (2191)
..|++-|.+++.. .+..++|.|+.|||||.+..--+...+...+ .++|++++++..+.++.+++..+++. .
T Consensus 8 ~~Ln~~Q~~av~~----~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 8 DSLNDKQREAVAA----PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp TTCCHHHHHHHTC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hcCCHHHHHHHhC----CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 5799999999963 3678999999999999987665555444322 58999999999999999999877543 2
Q ss_pred CCeEEEE
Q 000107 598 GRHVRSY 604 (2191)
Q Consensus 598 g~~V~~~ 604 (2191)
++.|..+
T Consensus 84 ~~~v~Tf 90 (647)
T 3lfu_A 84 GMWVGTF 90 (647)
T ss_dssp TCEEEEH
T ss_pred CcEEEcH
Confidence 3445444
|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00062 Score=70.01 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=50.1
Q ss_pred hhcCCC--CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1232 ELTTIP--YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1232 ~L~~ip--~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
++-+|+ ||++..+.+|.+|||.|+++||.+++.+|..+ .+++...|.+|++.|++++
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i------------~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI------------KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTT------------TTCSTTHHHHHHHHHHHHS
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHc------------cCCCHHHHHHHHHHHHHHc
Confidence 344444 99999999999999999999999999999988 5677788999999999875
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.022 Score=70.96 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=77.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC---
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLVLPYVSICAEKAEHLEVLLEPLGR--- 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~--- 599 (2191)
.|+|||...+.. +...+-+++..+-+.|||.++...++..+. ..+..+++++|++.-|.++++.+..++.....
T Consensus 163 ~L~p~Qk~il~~--l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKI--MSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHH--HHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHh--hccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 789999999864 434577899999999999887766655444 35678999999999999999888877654321
Q ss_pred -eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 600 -HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 600 -~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
.+... . ...-.+..+..|.+.+. .-.. ++ + ..+.++|+||+|.+.+
T Consensus 241 ~~~~~~-~-~~~I~f~nGs~i~~lsa-~~~s-lr---G----~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEW-N-KGSIELDNGSSIGAYAS-SPDA-VR---G----NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEE-C-SSEEEETTSCEEEEEEC-SHHH-HH---T----SCCSEEEEESGGGSTT
T ss_pred hhhccC-C-ccEEEeCCCCEEEEEEC-CCCC-cc---C----CCCCEEEechhhhcCC
Confidence 11111 1 10011223444444432 1111 11 1 2358999999999764
|
| >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0021 Score=84.54 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCC
Q 000107 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIP 1237 (2191)
Q Consensus 1158 ~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip 1237 (2191)
+...|.+||.+.....+.+..+|+.+....+.+ +-+ -|- + .++..++.+. ++.+..|++||
T Consensus 43 ~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~-----------~v~-~g~--~-~~~~~~~~~~----~~~~~~L~~v~ 103 (578)
T 2w9m_A 43 SLEELNEETPELLAREFTGIPKVGKGIAAELSD-----------FAR-SGT--F-APLEAAAGQL----PPGLLDLLGVR 103 (578)
T ss_dssp HHHSCC----------CCSSTTCCHHHHHHHHH-----------HHH-HSS--C-HHHHHHHHHS----CHHHHHHTTST
T ss_pred HHHhCchhhhhhhHhhhhhcCCCChhHHHHHHH-----------HHc-CCh--H-HHHHHHhhhh----HHHHHHHhCCC
Confidence 555677888888776666666777654332221 111 131 1 2334444443 77899999999
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHcC-CHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1238 YVKGSRARALYKAGLRTPLAIAEA-SISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1238 ~v~~~RAR~Ly~aG~~t~~~la~a-~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
|||+.+|++||++||+|++||++| ....|.++ ++++.+.|.+|+...
T Consensus 104 GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~------------~GiG~Ktaq~I~~~l 151 (578)
T 2w9m_A 104 GLGPKKIRSLWLAGIDSLERLREAAESGELAGL------------KGFGAKSAATILENV 151 (578)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTS------------TTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCCHHHHHHHHhhCccccC------------CCCCHHHHHHHHHHH
Confidence 999999999999999999999875 22222222 567888888886654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.036 Score=73.24 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccC--Ce
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLG--RH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg--~~ 600 (2191)
.|+|||...+.. +...+.+++..+-++|||.+....++..+.. .+..++++.|+...|.+.+..++.++..+. ++
T Consensus 163 ~l~p~Q~~i~~~--l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKI--MSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHH--HHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHh--hccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 589999998865 4456789999999999998876555544444 455899999999999999988888776543 11
Q ss_pred EEEEeccCCCCCCCCCCceEEEc--hHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCT--IEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~T--pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..........-.+..+..|.+.+ |+.+ +. . ...++|+||+|.+.+
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~l----rG---~----~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAV----RG---N----SFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHH----HH---S----CCSEEEEETGGGCTT
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCc----cC---C----CcceEEEehhccCCc
Confidence 00000001001122344444433 3322 21 1 367999999999754
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.061 Score=71.41 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=45.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEecc--cccccCCCCCc---eEEe-ecCCCCCc-----------------c---c-
Q 000107 850 HAGLTVEEREVVETCYRKGLVRVLTATS--TLAAGVNLPAR---RVIF-RQPRIGRD-----------------F---I- 902 (2191)
Q Consensus 850 HagLs~~eR~~Ve~~Fr~G~ikVLVATs--tLa~GVNLPav---~VVI-~~p~~g~~-----------------~---i- 902 (2191)
..|++..+|..+++.|+ +.-.||++|. .+..|||+|+. .||| ..|++..+ | +
T Consensus 476 ~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~ 554 (620)
T 4a15_A 476 YRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVV 554 (620)
T ss_dssp CTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTH
T ss_pred cCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhH
Confidence 34566678999999999 8889999974 89999999983 3444 34443221 1 0
Q ss_pred --CcccccccccccCCCCCCCceEEEEE
Q 000107 903 --DGTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 903 --s~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
-.....|-+||+-|.-. ..|..+++
T Consensus 555 ~pa~~~l~Qa~GRlIR~~~-D~G~v~ll 581 (620)
T 4a15_A 555 YPTAIKIRQEIGRLIRSAE-DTGACVIL 581 (620)
T ss_dssp HHHHHHHHHHHHTTCCSTT-CCEEEEEE
T ss_pred HHHHHHHHHHhCccccCCC-ceEEEEEE
Confidence 01234799999999863 47865555
|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0032 Score=73.16 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
..+...|..|||||..+|++|+++||.|+++|+.+++++|..+ .+++.+.|.+|+.....+
T Consensus 11 ~a~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v------------~GIG~ktAe~I~~~l~~~ 71 (241)
T 1vq8_Y 11 EEEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADV------------SGIGNALAARIKADVGGL 71 (241)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccchhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhc------------cCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999887 567788888887766544
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.025 Score=75.59 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCCHHHHHhhhhccccc-CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGVLQ-RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~-gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
..|++-|.+|+.. ++. ..-.||.||+|+|||.+..- ++..+...+.++|+++|+...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~--al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLF--ALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHH--HHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HhcCCCceEEECCCCCCHHHHHHH-HHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 3689999999976 554 45789999999999988654 4445666789999999999999999887754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.2 Score=63.87 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=73.5
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC-
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL- 613 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l- 613 (2191)
.++..|.-+++.|++|+|||..+...+.......|.+++|+..--. ..+...++..... ++....+ .|......+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~--~i~~~~l~~g~l~~~~~~ 271 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEA--RIDMNRVRLGQLTDRDFS 271 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHT--TCCTTTCCGGGCCHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHc--CCCHHHHhCCCCCHHHHH
Confidence 3577889999999999999988766555544445777888753211 2233333322111 1111000 111100000
Q ss_pred --------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-------chhHHHHHHHHHHHHh
Q 000107 614 --------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-------NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 --------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-------~RG~~lE~lL~kLr~~ 673 (2191)
-....+.+. |++.+...++++... ..+++||||.++.+... .|...+..++..|+.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 001234442 455555555554433 25899999999998743 2344566777777776
Q ss_pred hc
Q 000107 674 AG 675 (2191)
Q Consensus 674 ~~ 675 (2191)
+.
T Consensus 349 Ak 350 (444)
T 2q6t_A 349 AR 350 (444)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.18 Score=55.58 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=26.1
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I 576 (2191)
..|+.+++.||+|+|||+.+-. +...+. ..|..++++
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~-i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVA-TLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHH-HHHHHHHHSCCCCCEE
T ss_pred cCCCEEEEECCCCCCHHHHHHH-HHHHHHHHcCCeEEEE
Confidence 3589999999999999988754 333333 455555554
|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
Probab=94.45 E-value=0.032 Score=68.30 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.5
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHH
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~ 1268 (2191)
...|.+|++|||||..+|++||+.||+|++||..+ ...|..
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a-~~~l~~ 134 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN-EDKLNH 134 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC-GGGSCH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh-hhhhHH
Confidence 46789999999999999999999999999999987 444433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.069 Score=68.26 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=71.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL-- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l-- 613 (2191)
++..|.-+++.|++|+|||..+...+.......|.+++|+..-.. ..+...++.... .|+....+ .|......+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~--~~~~~~~l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAE--GNINAQNLRTGKLTPEDWGK 275 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHH--HTCCHHHHHTSCCCHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHH--cCCCHHHHhcCCCCHHHHHH
Confidence 577899999999999999988766555444445667888763211 123332221100 11110000 010000000
Q ss_pred -------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-----chhHHHHHHHHHHHHhhc
Q 000107 614 -------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 614 -------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-----~RG~~lE~lL~kLr~~~~ 675 (2191)
-....+.+. |.+.+...++++... .++++||||+++.+... ++...+..++..|+.++.
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 001234442 445555555554332 35899999999998743 244556677777776653
|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.017 Score=55.37 Aligned_cols=52 Identities=31% Similarity=0.307 Sum_probs=43.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
..|..|||||..+|++|++. |.++++|..+++++|..+ ++++...|.+|++.
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i------------~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKV------------PGISQGLAEKIFWS 75 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTS------------SSTTSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHC------------CCCCHHHHHHHHHH
Confidence 45779999999999999998 889999999999998776 45666777777653
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.049 Score=50.12 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.8
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
.|-.|||||..|+++|.+ -|.|+++|++|+.++|..++
T Consensus 5 ~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~vi 42 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSIL 42 (63)
T ss_dssp HHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHc
Confidence 467899999999999996 58999999999999999985
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.11 Score=65.65 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..+-.++.|+.|+|||....-. .. ..+.++++|+++++.++.+.+... |. ......
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~-----~~-~~~~lVlTpT~~aa~~l~~kl~~~----~~--------------~~~~~~ 215 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSR-----VN-FEEDLILVPGRQAAEMIRRRANAS----GI--------------IVATKD 215 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHH-----CC-TTTCEEEESCHHHHHHHHHHHTTT----SC--------------CCCCTT
T ss_pred cccEEEEEcCCCCCHHHHHHHH-----hc-cCCeEEEeCCHHHHHHHHHHhhhc----Cc--------------cccccc
Confidence 4567889999999999875321 11 256799999999998877655321 10 011234
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
-|.|.+++. ++. .....-..++|||||+-|+.
T Consensus 216 ~V~T~dsfL--~~~--~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 216 NVRTVDSFL--MNY--GKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp TEEEHHHHH--HTT--TSSCCCCCSEEEEETGGGSC
T ss_pred eEEEeHHhh--cCC--CCCCCCcCCEEEEeCcccCC
Confidence 588988753 221 11112247999999999874
|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.067 Score=52.57 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=43.4
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
..|..|||||..+|+.|.+. |.|+.+|..+++++|..+ ++++...|.+|++
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i------------~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC------------PGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTS------------TTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC------------CCCCHHHHHHHHH
Confidence 45779999999999999986 889999999999998776 4677777777765
|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.044 Score=67.63 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred cCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHH
Q 000107 1225 GVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIV 1267 (2191)
Q Consensus 1225 Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~ 1267 (2191)
-+.+-|.+|++|||||..+|++||+.||+|++||. +....|.
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~-~~~~~L~ 137 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELR-EQPQRLT 137 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-TCCTTCC
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH-hcccchH
Confidence 35577889999999999999999999999999998 4443443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.26 Score=60.28 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=80.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l--- 613 (2191)
++..|.-+++.|++|+|||..+...+... ...+.+++|+..-- -..|+..++......++..- ...|......+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~-a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~-l~~g~Ls~~e~~~l 118 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA-LNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHD-LESGRLDDDQWENL 118 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH-HHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHH-HHHTCCCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHH-HhcCCCCHHHHHHH
Confidence 57889999999999999998876555443 33678888875321 12333333322111111000 00010000000
Q ss_pred ------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEcccccccccc----hhHHHHHHHHHHHHhhcCCC
Q 000107 614 ------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN----RGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 614 ------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~----RG~~lE~lL~kLr~~~~~~~ 678 (2191)
-.+..|.|. |+..+...++++.... ..+++||||-++.|.... |...+..+...|+.++.+
T Consensus 119 ~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~--gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAke-- 194 (338)
T 4a1f_A 119 AKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQH--KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARE-- 194 (338)
T ss_dssp HHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHC--TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhc--CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHH--
Confidence 001223332 3455555555543321 168999999999986532 333466777778777643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 195 -------------------l~vpVi~lsQl 205 (338)
T 4a1f_A 195 -------------------LEIPIIALVQL 205 (338)
T ss_dssp -------------------HTSCEEEEEEC
T ss_pred -------------------cCCeEEEEEec
Confidence 56788888766
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.099 Score=70.17 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
.|++-|.+++.. .+.+++|.|+.|||||.+..--+...+.. ...++|+|+.|+..|.++.+++...+...
T Consensus 2 ~L~~~Q~~av~~----~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~--- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK--- 74 (673)
T ss_dssp CCCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT---
T ss_pred CCCHHHHHHHhC----CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc---
Confidence 589999999864 36799999999999999876666555544 23589999999999999999887764321
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHH-HHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNR 633 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~ 633 (2191)
....+-|+|...+. .+++.
T Consensus 75 --------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHHHHH
Confidence 01257899988753 34443
|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.054 Score=53.49 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=43.7
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
+..|..|||||..+|+.|++. |.++.+|..+++++|..+ ++++...|.+|++.
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i------------~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC------------PGLGPQKARRLFDV 83 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTS------------SSCCSHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC------------CCCCHHHHHHHHHH
Confidence 346779999999999999986 789999999999998776 45666777777663
|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.071 Score=50.32 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=43.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+.|..|||||..+|+.|++. |.|+.+|..+++++|..+ ++++...|.+|..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i------------~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKV------------EGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTS------------TTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcC------------CCCCHHHHHHHHH
Confidence 56789999999999999995 899999999999988766 5677777887765
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.29 Score=56.37 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=31.8
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.++..|..+++.||+|+|||+.+...+.. +...+.+++|+.-
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~-~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWN-GLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEEEc
Confidence 35678999999999999999987654444 3345778888763
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.077 Score=51.62 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.7
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
.|-.|||||..|+++|.+ -|.|+..|++|+.++|..++
T Consensus 19 ~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vi 56 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSIL 56 (84)
T ss_dssp HHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHh
Confidence 356899999999999996 58999999999999999995
|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.055 Score=67.19 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=32.3
Q ss_pred CchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1226 VRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1226 v~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
+..-|.+|++|||||..+|++||+.||+|++||..
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred chhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 45678999999999999999999999999999984
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.25 Score=56.98 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=53.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
.|.-+++.||+|+|||+.+...+ .++...|.+++++.|...- . . ...+...+|+. -..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~~g~kVli~~~~~d~--r-~--~~~i~srlG~~---------------~~~~ 69 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEYADVKYLVFKPKIDT--R-S--IRNIQSRTGTS---------------LPSV 69 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHHTTCCEEEEEECCCG--G-G--CSSCCCCCCCS---------------SCCE
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHhcCCEEEEEEeccCc--h-H--HHHHHHhcCCC---------------cccc
Confidence 46789999999999998875544 4455578889998875320 0 0 00111111110 0123
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+.+.+.+...+.. ...-..+++|||||++.+.
T Consensus 70 ~~~~~~~i~~~i~~---~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 70 EVESAPEILNYIMS---NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp EESSTHHHHHHHHS---TTSCTTCCEEEECSGGGSC
T ss_pred ccCCHHHHHHHHHH---HhhCCCCCEEEEecCccCc
Confidence 34555554444432 2222457999999999864
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.15 Score=68.96 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=73.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|++-|.+++.. .+.+++|.|+.|||||.+..--+...+...+ .++|+|+.|+..|.++.+++..+++.-
T Consensus 10 ~~Ln~~Q~~av~~----~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC----CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999864 3578999999999999987666665554333 589999999999999999988765321
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHH-HHHHHHhhhcCCCCccceEEEcccc
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKA-NSLVNRMLEEGRLSEIGIIVIDELH 652 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl-~~Ll~~l~~~~~L~~l~lVVIDEaH 652 (2191)
...+-|+|...+ ..++++......+ .-++-|+|+.+
T Consensus 84 ----------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ----------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ----------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ----------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 124689998775 3445442221111 11355666543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.35 Score=54.60 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=29.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|.-+++.||+|+|||+.+...+. ..+.+++|+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~ 52 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVD 52 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEE
Confidence 467789999999999999988776554 3577888875
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.53 Score=57.46 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCHHHHHhhhh--cccccC---CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 525 LYPWQVECLHV--DGVLQR---RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 525 l~p~Q~eal~~--~~il~g---knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
++|||.+++.. ..+..| ..+++.||.|+|||..+.. +.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 58999888753 112233 3599999999999988754 344444
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.17 Score=58.27 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=33.9
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++..|..++++|++|+|||..+...+.+.+...+.+++|+.
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 356778999999999999998887766666666677888876
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.18 Score=54.34 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.++.+++.+|+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 788999999999999987644
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.1 Score=58.68 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=31.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.|+-.++.||.|+|||+.++-. +.+....|.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~-a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR-IRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH-HHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHH-HHHHHHCCCEEEEEEec
Confidence 4678899999999999887544 44555678899999887
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.27 Score=62.60 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-ecc--CCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGN--QGGGSL 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~--~~~~~l 613 (2191)
++..|.-+++.|++|+|||..+...+..... .|.+++|+.--- -..|...++..... |+....+ .|. .....+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEm-s~~ql~~R~~~~~~--~i~~~~l~~g~~~l~~~~~ 268 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEM-GKKENIKRLIVTAG--SINAQKIKAARRDFASEDW 268 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSS-CTTHHHHHHHHHHS--CCCHHHHHHTGGGTCCSCH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCC-CHHHHHHHHHHHHc--CCCHHHHhcccCCCCHHHH
Confidence 5778999999999999999988766655444 477888886321 11223333222111 1110000 011 000000
Q ss_pred C---------CCCceEE-----EchHHHHHHHHHhhhcCCCCccc--eEEEccccccccc----chhHHHHHHHHHHHHh
Q 000107 614 P---------KDTSVAV-----CTIEKANSLVNRMLEEGRLSEIG--IIVIDELHMVADQ----NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 ~---------~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~--lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~ 673 (2191)
. ....|.| .|++.+...++++.... .++ +||||=++.+... .|...+..+...|+.+
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~---~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~l 345 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN---PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 345 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHS---CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHh---CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0123443 25566665566554432 578 9999999988632 3445566777777766
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 674 AGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 674 ~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+.+ .++.+|++|-.
T Consensus 346 Ake---------------------~~v~vi~lsql 359 (444)
T 3bgw_A 346 ARE---------------------LDVVVIALSQL 359 (444)
T ss_dssp HHH---------------------HTCEEEEEEEC
T ss_pred HHH---------------------hCCeEEEEecC
Confidence 543 46778887764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.63 Score=56.41 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=72.6
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEecc--CCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN--QGGGSL 613 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~--~~~~~l 613 (2191)
.++..|.-++++|++|+|||..+...+... ...+.+++|+.-- .-..++..++......+...- ...|. ......
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~-l~~~~~~l~~~~~ 139 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM-SDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQK-IKAARRDFASEDW 139 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH-HTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHH-HHSCHHHHCSSCH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhcCCCCCCHHHH
Confidence 467789999999999999998876655543 3456788888632 222333333332221111000 00010 000000
Q ss_pred ---------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccc--eEEEccccccccc----chhHHHHHHHHHHHHh
Q 000107 614 ---------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIG--IIVIDELHMVADQ----NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 ---------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~--lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~ 673 (2191)
-....|.+. |++.+...++++... ..++ +||||-++.+... .+...+..++..|+.+
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~l 216 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 216 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 001234332 455555555554332 2478 9999999988632 2445566777777766
Q ss_pred hc
Q 000107 674 AG 675 (2191)
Q Consensus 674 ~~ 675 (2191)
+.
T Consensus 217 Ak 218 (315)
T 3bh0_A 217 AR 218 (315)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.75 Score=55.62 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=27.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.+.++++.||+|+|||..+-. +.+.+...+..++++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~-i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQA-AGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHH-HHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHHHCCCEEEEEEH
Confidence 357899999999999988754 44445445667777654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.59 Score=56.70 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.+.+++++||+|+|||+++-. +++.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 568999999999999988754 445553
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.34 Score=52.77 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 57899999999999988754
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.29 Score=59.56 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchh
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPY 579 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~ 579 (2191)
++..|..+++.||+|+|||..+...+....... +.+++|+.--
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 566789999999999999988876655432221 6688888643
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.22 Score=71.25 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
++++-|.++|.. .+++++|.|..|||||.+..--+++.+... ..+++++++|++.|.++.+++...+.
T Consensus 10 ~~t~eQ~~~i~~----~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVS----TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHC----CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 789999999965 388999999999999999877777666542 24899999999999999999877554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.79 Score=52.14 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+.++++.||+|+|||..+.. +.+.+...+..++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~-l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA-ACARANELERRSFYI 86 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH-HHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHcCCeEEEE
Confidence 478999999999999988753 334443344455544
|
| >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.43 Score=54.42 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||=.. +. ++|-..- --.+|-.|||||..||+.|.+. |.|++.|.+|+.
T Consensus 141 llq~iRDEaHRFAIt~---------hr--------~~R~k~~---~~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~As~ 199 (220)
T 2nrt_A 141 LLVQIRDETHRFAVSY---------HR--------KRREKES---LRSVLDNVPGIGPIRKKKLIEH-FGSLENIRSASL 199 (220)
T ss_dssp HHHHHHHHHHHHHHGG---------GH--------HHHHHHH---HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCH
T ss_pred hhhhhcchhhhccccc---------cc--------ccccccc---ccccccCCCCcCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 3799999999986432 11 0011110 1245679999999999999996 889999999999
Q ss_pred HHHHHH
Q 000107 1264 SEIVKA 1269 (2191)
Q Consensus 1264 ~~l~~~ 1269 (2191)
++|.++
T Consensus 200 EeL~~V 205 (220)
T 2nrt_A 200 EEIARV 205 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.67 Score=54.75 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=19.4
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+...+++++.||+|+|||.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHH
Confidence 45678999999999999988753
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.63 Score=57.61 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=57.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|..++|.+|+|+|||..+...+.. +...+.+++|+..-..+.... .. .+|+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~-~~~~g~~vlyi~~E~s~~~~~---a~----~~g~d~--------------- 126 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ-AQKAGGTCAFIDAEHALDPVY---AR----ALGVNT--------------- 126 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHH---HH----HTTCCG---------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH-HHHCCCeEEEEECCCChhHHH---HH----HcCCCH---------------
Confidence 5677899999999999999887655544 444577888886543222111 11 122210
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+++|. |.+.+...++.+... ..+++||||.+..+.
T Consensus 127 ~~l~i~~~~~~e~~l~~l~~l~~~---~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DELLVSQPDNGEQALEIMELLVRS---GAIDVVVVDSVAALT 165 (366)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHTT---TCCSEEEEECTTTCC
T ss_pred HHceeecCCcHHHHHHHHHHHHhc---CCCCEEEEeChHHhc
Confidence 012222 456666666654432 357999999999886
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=90.72 E-value=1.2 Score=56.41 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS 618 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~ 618 (2191)
+..+++++|+|+|||+.+...+. .+...|++++++. +++.-+.+... .+....|+.+.. ... .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~-~l~~~G~kVllv~~D~~r~~a~eqL~---~~~~~~gv~~~~--~~~-------~-- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY-FYKKRGYKVGLVAADVYRPAAYDQLL---QLGNQIGVQVYG--EPN-------N-- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH-HHHHTTCCEEEEEECCSCHHHHHHHH---HHHHTTTCCEEC--CTT-------C--
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHcCCeEEEEecCccchhHHHHHH---HHHHhcCCceee--ccc-------c--
Confidence 57899999999999988764443 3445677877765 56655544443 333444544321 110 0
Q ss_pred eEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 619 VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 619 IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
..|.. +....+......+.++||||++-.+.
T Consensus 162 ---~dp~~---i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 162 ---QNPIE---IAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp ---SCHHH---HHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred ---CCHHH---HHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 01322 22222233334578999999997654
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=90.71 E-value=0.39 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~l 566 (2191)
..+++++||+|+|||..+.. +.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~-~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG-LAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CCceEEECCCCCCHHHHHHH-HHHHH
Confidence 57899999999999988743 33443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.63 Score=54.77 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
...++++.||+|+|||.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 347899999999999988753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.65 E-value=0.59 Score=53.94 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=31.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|+-.+++||-|+|||+.++-.+.+ ....|.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r-~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR-FQIAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-HHTTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH-HHHCCCeEEEEeecC
Confidence 4778899999999999887655544 455788999998874
|
| >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... | Back alignment and structure |
|---|
Probab=90.47 E-value=0.25 Score=60.37 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHcCCCCHHHHHcCC
Q 000107 1230 IVELT-TIPYVKGSRARALYKAGLRTPLAIAEAS 1262 (2191)
Q Consensus 1230 Ll~L~-~ip~v~~~RAR~Ly~aG~~t~~~la~a~ 1262 (2191)
++.|+ +|||||..+|++||+.||+|++||..+.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 67776 9999999999999999999999998753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=1.6 Score=52.10 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
+.++++.||+|+|||.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999988753
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=90.23 E-value=0.58 Score=53.70 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=31.0
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P 578 (2191)
.++..|..+++.+|+|+|||+.+...+...+... +..++|+.-
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3567889999999999999998866554323321 567788753
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=1 Score=53.66 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|.-+++.||+|+|||+.+...+.......|.+++|+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999998876544433333365777764
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=90.07 E-value=1 Score=58.17 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=70.6
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE----EeccCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS----YYGNQGGGS 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~----~~G~~~~~~ 612 (2191)
++..|.-++|.|++|+|||..+...+.......|.+++|+.---. ..|...++..... ++.... ..|......
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~--~~~~~~~~~~~~g~l~~~~ 314 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHN--RVRLRQSDSLKREIIENGK 314 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHT--TSCCTTCHHHHHHHHHTSH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHc--CCChhhccccccCCCCHHH
Confidence 577899999999999999998876655443333778888763211 2233333322111 111100 000000000
Q ss_pred -------CCCCCceEEE------chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhc
Q 000107 613 -------LPKDTSVAVC------TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 613 -------l~~~~~IiV~------TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~ 675 (2191)
+.....+.|. |++.+...++++... ..+++||||=+..+... .+...+..++..|+.++.
T Consensus 315 ~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~---~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak 391 (503)
T 1q57_A 315 FDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG---LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK 391 (503)
T ss_dssp HHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT---TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh---cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0001123332 344444445544332 25899999999987532 344556667777776654
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.29 Score=55.86 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=30.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|+-.++++|-|+|||+.++-.+. +....|.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~-r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVR-RTQFAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHH-HHHHTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH-HHHHCCCEEEEEEecc
Confidence 467778999999999988755544 4455788999999874
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.26 Score=59.78 Aligned_cols=56 Identities=32% Similarity=0.383 Sum_probs=46.5
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
+|..||||+..-|.+|-++||+|+++|+.+++.+|+.+. ++....|.+++..|++.
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~------------gis~~~a~~~i~~a~~~ 59 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE------------GISEKAAAKMIMGARDL 59 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTST------------TCCHHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhh------------CcCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999999998873 35556677777776654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=89.58 E-value=3.5 Score=46.46 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|..+++.||+|+|||+.+...+.. +...+.+++|+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~-~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK-GLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH-HHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEE
Confidence 4667899999999999999876554433 333466677765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.86 Score=55.90 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~ 577 (2191)
.+.+++++||+|+|||..+... .+.+... +..++++-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~-~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV-LRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH-HHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 4679999999999999887543 3333322 44555554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.86 Score=56.15 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=56.3
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++-.|..++|.+|+|+|||+.+...+. .+...+++++|+..-..+-...+ +++ |+..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~-~~~~~gg~VlyId~E~s~~~~ra---~rl----gv~~-------------- 113 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIA-EAQKMGGVAAFIDAEHALDPVYA---KNL----GVDL-------------- 113 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH-HHHHTTCCEEEEESSCCCCHHHH---HHH----TCCG--------------
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHH-HHHhcCCeEEEEecccccchHHH---HHc----CCch--------------
Confidence 3577789999999999999988755443 44456778999876544333222 222 2210
Q ss_pred CCceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 616 DTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 616 ~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
-++.+. |.+.+..+++.+... ..+++||||.+-.+.
T Consensus 114 -~~l~i~~~~~~e~~l~~~~~l~~~---~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 -KSLLISQPDHGEQALEIVDELVRS---GVVDLIVVDSVAALV 152 (356)
T ss_dssp -GGCEEECCSSHHHHHHHHHHHHHT---SCCSEEEEECTTTCC
T ss_pred -hhhhhhhccCHHHHHHHHHHHhhh---cCCCeEEehHhhhhc
Confidence 012222 334444444443332 357899999987654
|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=89.18 E-value=1.4 Score=49.05 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+..++.+ ...++||+.||+.+|++. |+.... ..++||+..
T Consensus 80 ~~v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~----------------------------~~~iDt~~l 129 (186)
T 2p1j_A 80 EEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWE----------------------------RPYIDTLAL 129 (186)
T ss_dssp HHHHHHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCC----------------------------CCEEEHHHH
T ss_pred HHHHHHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCC----------------------------CCEEeHHHH
Confidence 4567778888864 578999999999998652 222110 136899865
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
+..+. ....++|.. ++. +++.+. . ....|..||.+|..|+..+.....++
T Consensus 130 ~~~~~-~~~~~~L~~---l~~-~~gi~~------~----------~~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 130 AKSLL-KLRSYSLDS---VVE-KLGLGP------F----------RHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp HHHHT-CCSCCSHHH---HHH-HTTCCS------T----------TCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHh-hcCCCCHHH---HHH-HcCCCC------C----------CCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554 334555443 333 233221 0 12457789999999888776554443
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.11 E-value=0.89 Score=56.62 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
..+++++.||+|+|||+++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3589999999999999887543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.68 Score=56.09 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----------cC----CEEEEEchhHHH-HHHHHHHHHHHhhccCCe
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----------TG----KMALLVLPYVSI-CAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----------~g----~kaL~I~P~raL-A~q~~~~l~~l~~~lg~~ 600 (2191)
++..|..+++.||+|+|||..+...+....+. .| .+++|+.--..+ ..++.+.++. +|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~----~g~~ 169 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH----AGID 169 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH----HTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH----cCCC
Confidence 46678999999999999998887666542221 23 688888743322 2233323322 2221
Q ss_pred EEEEeccCCCCCCCCCCceEEE---chHHHHHHHHHhhhcC-CCCccceEEEccccccccc---------chhHHHHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVC---TIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQ---------NRGYLLELLL 667 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~---TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~---------~RG~~lE~lL 667 (2191)
...+. -+|.+. +.+.+..++..+.... ....+++||||.+..+... .|...+..++
T Consensus 170 ~~~~~-----------~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~ 238 (322)
T 2i1q_A 170 GQTVL-----------DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHM 238 (322)
T ss_dssp HHHHH-----------HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHH
T ss_pred HHHHh-----------cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 10000 012222 3343333332221111 1246899999999977421 1223456667
Q ss_pred HHHHHhhc
Q 000107 668 TKLRYAAG 675 (2191)
Q Consensus 668 ~kLr~~~~ 675 (2191)
..|+.+..
T Consensus 239 ~~L~~la~ 246 (322)
T 2i1q_A 239 ATLNKLAD 246 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766553
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=88.83 E-value=0.68 Score=56.99 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=56.4
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++..|..+++.+|+|+|||+.+...+.. +...+.+++|+.--..+.... . ..+|+..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~-~~~~g~~vlyi~~E~~~~~~~---a----~~lG~~~-------------- 113 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN-AQAAGGIAAFIDAEHALDPEY---A----KKLGVDT-------------- 113 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHH---H----HHTTCCG--------------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH-HHhCCCeEEEEECCCCcCHHH---H----HHcCCCH--------------
Confidence 35778899999999999999988665544 344677888886432221111 1 1122210
Q ss_pred CCceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 616 DTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 616 ~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++.|. |.+.+..+++.+... ..+++||||++..+.
T Consensus 114 -~~l~i~~~~~~e~~l~~~~~l~~~---~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 114 -DSLLVSQPDTGEQALEIADMLVRS---GALDIIVIDSVAALV 152 (349)
T ss_dssp -GGCEEECCSSHHHHHHHHHHHHTT---TCCSEEEEECGGGCC
T ss_pred -HHeEEecCCCHHHHHHHHHHHHhc---CCCCEEEEcChHhhc
Confidence 011222 345555555544322 347899999999876
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=88.77 E-value=2 Score=50.80 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=29.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----------CCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----------GKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~----------g~kaL~I~P 578 (2191)
++..|..+++.||+|+|||+.+...+. .+... +.+++|+.-
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~ 76 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPA 76 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEES
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEEC
Confidence 477899999999999999998766554 33321 356777653
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.97 Score=50.84 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.++-.++.||.|+|||+-.+..+- +....+.+++|+-|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~-n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVR-RFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH-HHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH-HHHHcCCeEEEEccc
Confidence 478899999999999977655544 344467899999886
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.55 E-value=1 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc--------CCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST--------GKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~--------g~kaL~I~ 577 (2191)
..++++.||+|+|||..+.. +.+.+... +..++++-
T Consensus 45 ~~~vll~G~~G~GKT~la~~-l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY-IFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH-HHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHHhhhhcCCCCceEEEEE
Confidence 56899999999999988743 34444332 56667664
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.48 E-value=1.2 Score=49.61 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987653
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=88.32 E-value=1.1 Score=54.11 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+++++.||+|+|||+++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 357899999999999988754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.29 E-value=1.2 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.6
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
...+++++.||+|+|||+.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4567899999999999988754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=88.03 E-value=0.48 Score=58.37 Aligned_cols=58 Identities=34% Similarity=0.318 Sum_probs=48.0
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
.+|.+||||+..-+.+|-+|||+|+++|+.+++.+|.++. +++...|.+|++.|++.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~------------~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVA------------GISEGTALKIIQAARKAA 92 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHH------------CCCHHHHHHHHHHHHHHC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhc------------CCCHHHHHHHHHHHhhhc
Confidence 4688889999999999999999999999999999999984 344455667777666654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1.8 Score=54.97 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEch
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLP 578 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P 578 (2191)
..++++.||+|+|||..+.. +...+... +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEeeH
Confidence 56899999999999988753 44444333 566777654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.94 E-value=2.3 Score=53.80 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
...+++++++|+|||+++.-.+ ..+...|.+++++. |+|.-+.++.. .+....|+.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~~G~kVllv~~D~~R~aa~eqL~---~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQKRGYKVGVVCSDTWRPGAYHQLR---QLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEEECCCSSTHHHHHHH---HHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHHCCCeEEEEeCCCcchhHHHHHH---HHHHhcCCcE
Confidence 4688999999999999875433 34555778887776 77776655444 3344456554
|
| >4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.48 Score=56.87 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=68.0
Q ss_pred HhcCCCHHHHHHHh---CCCcchHHHHH---------------HHHHHHHHHHHHHHHHhCchhHHHHHHHHHH---HHh
Q 000107 1165 LVQETPVLEVCETF---KVARGMVQALQ---------------ENAGRFASMVSVFCERLGWYDLEGLIAKFQN---RVS 1223 (2191)
Q Consensus 1165 li~e~~~~~i~~~y---~v~rG~lq~l~---------------~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~---RL~ 1223 (2191)
||=|-.+++|.+.| .|+|.-|+.-+ .+|..|+. ...+|..++ .+.+++.. +.-
T Consensus 379 LLIEGDLeEIe~LYteR~IhPNAIRGAveiqLASLAvkfG~g~eTAe~L~~-~agr~l~le-----qi~rdrEvgkL~SV 452 (685)
T 4gfj_A 379 GILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLR-AFGNPERVK-----QLAREFEIEKLASV 452 (685)
T ss_dssp HHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHH-HHSSHHHHH-----HHHHTTCHHHHHTS
T ss_pred EEEEeccHHhhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCchHHHHHHHH-Hhcchhhhh-----hhhhhhhhhccccc
Confidence 45577788888877 67776666542 22222222 222232222 22222211 344
Q ss_pred ccCchhh--------hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHH
Q 000107 1224 FGVRAEI--------VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIK 1293 (2191)
Q Consensus 1224 ~Gv~~EL--------l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~ 1293 (2191)
+||++.- --|..|||||..+|+.|.+. |-|++.+++|++++|.. .+++.+.|+.|+
T Consensus 453 pGikek~sktL~eqeamLtAIaGIGp~tAeRLLEk-FGSVe~Vm~AteDELRe-------------dGIGekqarrI~ 516 (685)
T 4gfj_A 453 EGVGERVLRSLVPGYASLISIRGIDRERAERLLKK-YGGYSKVREAGVEELRE-------------DGLTDAQIRELK 516 (685)
T ss_dssp TTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHH-HTSHHHHHHSCHHHHHH-------------TTCCHHHHHHHH
T ss_pred ccchhhhhcccccceeeeeccCCCCHHHHHHHHHH-hcCHHHHHhCCHHHHHH-------------ccccHHHHHHHh
Confidence 6766433 35789999999999999887 66999999999999933 356667777665
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=87.14 E-value=0.97 Score=55.42 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=32.0
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchh
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPY 579 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~ 579 (2191)
++..|..+++.||+|+|||..+...+...... .+.+++|+.-.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 56678999999999999999887655543222 36788888654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=86.80 E-value=2.2 Score=52.12 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=25.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~ 577 (2191)
.+..+++.||+|+|||..+.. +.+.+... +..++++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHH-HHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEE
Confidence 367899999999999988754 33444333 55666665
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=86.67 E-value=0.82 Score=56.40 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|+.+++.+|+|+|||..+...+.. +...+.+++|+..-..+-...+ .. +|+..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~-~~~~g~~vlyid~E~s~~~~~a---~~----~g~~~--------------- 115 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA-AQREGKTCAFIDAEHALDPIYA---RK----LGVDI--------------- 115 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHHH---HH----TTCCG---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEeCCCCccHHHH---HH----cCCCh---------------
Confidence 5677899999999999999998665544 3446778888875322212211 11 22210
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++.+. |.+.+..+++.+... ..+++||||.+..+.
T Consensus 116 ~~l~i~~~~~~e~~~~~~~~l~~~---~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 116 DNLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAALT 154 (356)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHH---TCCSEEEEECGGGCC
T ss_pred hheeeeCCCCHHHHHHHHHHHHhc---cCCCEEEEcCHHHhc
Confidence 012222 345555555544332 357899999999876
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.33 E-value=0.77 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.074 Sum_probs=30.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|.-.+|++|-|+|||+.++-.+ .+....+.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEecc
Confidence 46778999999999998665444 55556788999998863
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.17 E-value=2.5 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.++.+++.||+|+|||+.+-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 368999999999999988753
|
| >3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A | Back alignment and structure |
|---|
Probab=86.11 E-value=0.63 Score=46.08 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=37.6
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
+|..||+||..-+|.|..+||.|+++|...++.+.-..|..
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~ 45 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWE 45 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHH
Confidence 67899999999999999999999999999999988877743
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.03 E-value=1.1 Score=55.10 Aligned_cols=22 Identities=9% Similarity=0.419 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
..+++++.||+|+|||+++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4679999999999999887543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=1.4 Score=55.14 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=30.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P 578 (2191)
++..|..+.|.+|+|+|||+.+...++..... .+.+++|+.-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 56678999999999999998887555443332 2467888754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.73 E-value=2.2 Score=52.32 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEc
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVL 577 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~ 577 (2191)
++++.||+|+|||..+.. +.+.+... +..++++-
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 899999999999988743 44444433 45666664
|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.44 E-value=0.54 Score=62.09 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=70.4
Q ss_pred cCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHH
Q 000107 1167 QETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARA 1246 (2191)
Q Consensus 1167 ~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~ 1246 (2191)
++--+.++++-|.+..++|..| +.+|-..-..++..+...-.....+=|.. +.||+||..+|+.
T Consensus 464 ~~g~I~~~aDL~~L~~~~L~~l---------------~gfG~Ksa~nLl~aIe~sk~~~l~R~L~a-lgi~~VG~~~Ak~ 527 (671)
T 2owo_A 464 EKEYVHTPADLFKLTAGKLTGL---------------ERMGPKSAQNVVNALEKAKETTFARFLYA-LGIREVGEATAAG 527 (671)
T ss_dssp HTTCCSSGGGGGTCCHHHHHTS---------------TTCCHHHHHHHHHHHHHHTBCCHHHHHHH-TTCTTCCHHHHHH
T ss_pred HcCCCCCHHHHHhhCHHHhhcc---------------cccchhHHHHHHHHHHHHhcCChhheehh-hcccCccHHHHHH
Confidence 3444566666777765554433 12333345567777665433322233333 3899999999999
Q ss_pred HHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1247 LYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1247 Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
|.++ |.|++.|..|+.++|..+ ++++..+|.+|++-.
T Consensus 528 La~~-Fgsl~~l~~As~eeL~~i------------~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 528 LAAY-FGTLEALEAASIEELQKV------------PDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHH-HCSHHHHHTCCHHHHTTS------------TTCCHHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHhCCHHHHhhc------------CCCCHHHHHHHHHHH
Confidence 9998 999999999999998877 578889999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=2.5 Score=47.56 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..+++.||+|+|||..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3799999999999988753
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.74 E-value=2.5 Score=54.76 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+.++++||+|+|||.++... .+.+ +..++.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~~l-a~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLV-AQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHH-HHHT---TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHHc---CCCEEEEe
Confidence 478999999999999987543 3332 55566554
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.72 E-value=3.7 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+.+++.||+|+|||+.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 347899999999999988753
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=84.47 E-value=1.3 Score=58.47 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=61.4
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
.++.-|.+++.. +.. ....++.|+-|.|||.+.-+++-.. . ..+++++|+.+-+....+ +...
T Consensus 175 ~~T~dQ~~al~~--~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~---~~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQ--LMTMPPGVAAVTAARGRGKSALAGQLISRI-A---GRAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHH--HTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S---SCEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHH--HHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H---hCcEEECCCHHHHHHHHH----HhhC-----
Confidence 678899999865 433 4568999999999997766655432 2 347999999886654332 2111
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|-+..|.. ++. .....++|||||+=+|.
T Consensus 240 ----------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 240 ----------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP 268 (671)
T ss_dssp ----------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC
T ss_pred ----------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC
Confidence 133445654 221 23458999999999985
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.42 E-value=1.7 Score=54.24 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 179 i~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHH
Confidence 4456899999999999998874
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=84.35 E-value=1.1 Score=50.81 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~ 564 (2191)
-.++.|+.|||||+.+...++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999987554433
|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=0.85 Score=60.19 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=68.5
Q ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHH
Q 000107 1170 PVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYK 1249 (2191)
Q Consensus 1170 ~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~ 1249 (2191)
.+..+++-|...+++|..| +.+|-.....++..+...-.....+=|..| .||+||..+|+.|++
T Consensus 462 ~I~~~~DL~~L~~e~L~~l---------------~g~G~Ksa~nLl~aIe~sk~~~l~R~L~al-GI~~VG~~~Ak~La~ 525 (667)
T 1dgs_A 462 LVRDVADLYHLRKEDLLGL---------------ERMGEKSAQNLLRQIEESKHRGLERLLYAL-GLPGVGEVLARNLAR 525 (667)
T ss_dssp SCSSGGGGGGGCCHHHHTT---------------SSCCSTTHHHHHHHHHHGGGCCHHHHHHHT-TCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHhcCHHHHhcc---------------cccchhhHHHHHHHHHHHhcCcHHHhhHhh-ccCCccHHHHHHHHH
Confidence 4455555666665544332 123444566777777665443222333333 899999999999998
Q ss_pred cCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1250 AGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1250 aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
. |.|++.|..|++++|..+ ++++..+|.+|++-.
T Consensus 526 ~-Fgsl~~l~~As~eeL~~I------------~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 526 R-FGTMDRLLEASLEELIEV------------EEVGELTARAILETL 559 (667)
T ss_dssp T-TSBHHHHTTCCHHHHHTS------------TTCCHHHHHHHHHHH
T ss_pred H-cCCHHHHHhCCHHHHHhc------------cCcCHHHHHHHHHHH
Confidence 7 999999999999999876 578889999998754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=83.77 E-value=1.7 Score=53.38 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+++++.||+|+|||+++-.
T Consensus 83 ~~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHH
Confidence 357899999999999998753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=83.37 E-value=1.9 Score=62.55 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=63.5
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++-.|+.+.+.+|.|||||+.+.-.+. .....|..++||.+--+|....+ ..+|+.+.
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a-~~~~~g~~~~~i~~e~~~~~~~~-------~~~Gv~~~-------------- 1484 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIA-AAQREGKTCAFIDAEHALDPIYA-------RKLGVDID-------------- 1484 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH-HHHHTTCCEEEECTTSCCCHHHH-------HHTTCCGG--------------
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHH-HHHhcCCeEEEEecCCCCCHHHH-------HHcCCCHH--------------
Confidence 444679999999999999999865554 44557899999998777765542 23344321
Q ss_pred CceEEEch---HHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVCTI---EKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~Tp---Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
++++.-| |....++..+.... .+++||||.+--+.
T Consensus 1485 -~l~~~~p~~~e~~l~~~~~~~~s~---~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 -NLLCSQPDTGEQALEICDALARSG---AVDVIVVDSVAALT 1522 (1706)
T ss_dssp -GCEEECCSSHHHHHHHHHHHHHHT---CCSEEEESCSTTCC
T ss_pred -HeEEeCCCcHHHHHHHHHHHHHcC---CCCEEEEccHHhCC
Confidence 2555555 66666666655543 46899999876553
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.67 E-value=1.1 Score=65.87 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=57.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..++++++++|+|+|||..+...+... ...|.+++|+..--++....+ +.+ |+.+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea-~~~G~~v~Fi~~e~~~~~l~a---~~~----G~dl~-------------- 1480 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIYA---RKL----GVDID-------------- 1480 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEECTTSCCCHHHH---HHT----TCCTT--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEEcccccCHHHH---HHc----CCCch--------------
Confidence 35568999999999999999987665544 456889999986544433332 222 21110
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.+.|. +.|++..+++++.+. ..+++|||||+.-+
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr~---~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAAL 1517 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHHH---TCCSEEEESCGGGC
T ss_pred -hceeecCChHHHHHHHHHHHHhc---CCCCEEEEcChhHh
Confidence 02222 235655555554332 35789999999643
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.61 E-value=3.3 Score=56.17 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=65.4
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.+..+.+++|.+||+.-+...+..+.+.+...+ ..|+.+||+++
T Consensus 413 ~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g------------------------------------i~v~~l~G~~~ 456 (780)
T 1gm5_A 413 NYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN------------------------------------IHVALLIGATT 456 (780)
T ss_dssp HHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS------------------------------------CCEEECCSSSC
T ss_pred HHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC------------------------------------ceEEEEeCCCC
Confidence 345678999999999988888888776653221 23889999999
Q ss_pred HHHHHHHHHHhhcCCceEEEecccc-cccCCCCCceEE-ee
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTL-AAGVNLPARRVI-FR 893 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstL-a~GVNLPav~VV-I~ 893 (2191)
..+|..+.+.+.+|..+|+|+|..+ ...+++....+| ||
T Consensus 457 ~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 457 PSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp HHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 9999999999999999999999743 455777776655 44
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=82.44 E-value=2.9 Score=50.25 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..+++.+|+|+|||..+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SEEEECSSTTSSHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 4568888899999988754
|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
Probab=82.30 E-value=0.92 Score=52.01 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=44.0
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
.|+.|||||..+|+.|.+. |.|+.+|.+|++++|..+ ++++.+.|++|.+.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v------------~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKV------------EGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHS------------TTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHH
Confidence 3679999999999999997 889999999999998776 56778888888763
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=1.1 Score=54.30 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~ 564 (2191)
++..+..+++.+|+|+|||..+...+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4667788899999999999887665443
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=82.13 E-value=5.6 Score=49.19 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.3
Q ss_pred cCCeEEE--EcCCCCchhHHHHHHHHHHHHhc------CCEEEEEc
Q 000107 540 QRRNLVY--CASTSAGKSFVAEILMLRRLIST------GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi--~APTGSGKTlvael~iL~~ll~~------g~kaL~I~ 577 (2191)
.+..+++ +||+|+|||..+... .+.+... +..++++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFT-VKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHH-HHHHHHHHhccCCceeEEEEE
Confidence 3568888 999999999887543 3333321 44566664
|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
Probab=81.98 E-value=0.93 Score=51.37 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred hcCCCCCCHHHHHHHHHcCCCC---HHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRT---PLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t---~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
|..|+|||..+|++|.+. |.+ ...|+++++++|.++ ++++.+.|.+|+.+-+.
T Consensus 75 L~~V~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~v------------pGIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSG-MSAQQFVNAVEREEVGALVKL------------PGIGKKTAERLIVEMKD 130 (203)
T ss_dssp HHHSSSCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHTS------------TTCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhh-CChHHHHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHHHHH
Confidence 557999999999999985 677 778999999999988 67888999999876543
|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=81.97 E-value=0.33 Score=55.72 Aligned_cols=77 Identities=29% Similarity=0.338 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||=..-+ ++|-..- --..|..|||||..||+.|.+. |.|++.|.+|+.
T Consensus 146 llq~irDEaHRFAIt~hr-----------------~~r~k~~---~~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~ 204 (226)
T 3c65_A 146 LLQRIQDEVHRFAVMFHR-----------------KTRQKTM---FHSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATV 204 (226)
T ss_dssp HHHHHHHHHHHHTTC-----------------------------------------------------------------
T ss_pred hhhhccchhhhhhhhccc-----------------ccccccc---ccccccccCCCCHHHHHHHHHH-hCCHHHHHhCCH
Confidence 378888999888743211 1111111 1256789999999999999997 999999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
++|..+ . ++..+|..|++
T Consensus 205 eeL~~V-G------------IG~~~A~~I~~ 222 (226)
T 3c65_A 205 EELQRA-N------------IPRAVAEKIYE 222 (226)
T ss_dssp -------------------------------
T ss_pred HHHHHc-C------------CCHHHHHHHHH
Confidence 998876 1 44566777654
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=81.42 E-value=1.8 Score=52.29 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=58.9
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~ 614 (2191)
.++-.| .+++.+|+|+|||..++..+...... .+.+++||..-.++.... +++ +|+..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~----lGvd~------------- 82 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRS----MGVDP------------- 82 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHH----TTCCG-------------
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHH----hCCCH-------------
Confidence 346667 79999999999999987766654433 278999998765554332 222 23211
Q ss_pred CCCceEEEc---hHHH-HHHHHHhhhcCCCCccceEEEccccccc
Q 000107 615 KDTSVAVCT---IEKA-NSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 615 ~~~~IiV~T---pEkl-~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++++.. .|.+ ..+++.+ ....-..+++||||=+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l-~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQL-DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHH-HTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHH-HHhhccCceEEEEecccccc
Confidence 1244444 3444 4444433 11122458999999998874
|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
Probab=80.77 E-value=0.96 Score=50.76 Aligned_cols=53 Identities=25% Similarity=0.176 Sum_probs=44.4
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCC---HHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRT---PLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t---~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
.|..|||||+.+|++|.+. |.+ ...|+.+++++|.++ ++++.+.|.+|+.+-+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~v------------pGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSA-LPPRLLARALLEGDARLLTSA------------SGVGRRLAERIALELK 128 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHTTS------------TTCCHHHHHHHHHHHT
T ss_pred HHhcCCCcCHHHHHHHHHh-CChHHHHHHHHhCCHHHHHhC------------CCCCHHHHHHHHHHHH
Confidence 3668999999999999986 666 667999999999887 6788899999987654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=80.72 E-value=7.4 Score=45.06 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.||+|+|||+.+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999988753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=80.47 E-value=2.2 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+....++++.||+|+|||+++-.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHH
Confidence 34567899999999999998754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.28 E-value=5.4 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=19.1
Q ss_pred ccccCCeEEEEcCCCCchhHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvae 559 (2191)
++...+.+++.||+|+|||+.+-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHH
Confidence 34456889999999999998874
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.24 E-value=3.4 Score=56.95 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~i 562 (2191)
..+++++||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999876543
|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
Probab=80.03 E-value=4.2 Score=47.30 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccC--CccEEEech-HHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHH
Q 000107 1584 QRWKRIGEIMEKR--DVRKFTWNM-KVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC 1656 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~--~v~kv~hNl-K~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 1656 (2191)
+.+..+..++.+. ....|+||+ .||+..|++. |+.... .-..++||+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~--------------------------~~~~~iDtl 156 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL--------------------------DGTFCVDSI 156 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT--------------------------TTCEEEEHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc--------------------------cCCeEeehH
Confidence 5667778888752 256899996 9999988652 332110 001258998
Q ss_pred HHHHhcC----C----CCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1657 IVSWILW----P----DDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1657 lAawLL~----P----~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
..++.+. | ....++ |..++.++++.+.. ..+.|..||.+|.+++..+...+
T Consensus 157 ~l~r~l~~~~~p~~~~~~~~~~---L~~l~~~~~gi~~~----------------~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 157 AALKALEQASSPSGNGSRKSYS---LGSIYTRLYWQAPT----------------DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHHHHHHHCC------CCCS---HHHHHHHHHSSCCS----------------STTSHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHhhcCccccCCCCCcC---HHHHHHHHhCCCCC----------------CCcChHHHHHHHHHHHHHHHHHH
Confidence 6655332 3 234554 55455454443210 12457789999988877655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2191 | ||||
| d1kfsa2 | 410 | e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragm | 3e-86 | |
| d2hhva2 | 408 | e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragm | 1e-79 | |
| d1qtma2 | 409 | e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragm | 5e-70 | |
| d1x9ma2 | 494 | e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacte | 1e-40 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 6e-33 | |
| d2p6ra2 | 198 | a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglob | 8e-29 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-25 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 2e-09 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-08 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-07 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-07 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 4e-05 | |
| d1pzna1 | 61 | a.60.4.1 (A:35-95) DNA repair protein Rad51, N-ter | 4e-05 | |
| d2i1qa1 | 60 | a.60.4.1 (A:5-64) DNA repair protein Rad51, N-term | 4e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 1e-04 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-04 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 2e-04 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 5e-04 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 0.001 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.002 | |
| d1v97a2 | 90 | d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal dom | 0.003 |
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} Length = 410 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Score = 286 bits (732), Expect = 3e-86
Identities = 139/446 (31%), Positives = 225/446 (50%), Gaps = 40/446 (8%)
Query: 1729 EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFS 1788
+ + NIE+PLV VL+ +E G+ +D + L +L LEKKA+ +AG +F+
Sbjct: 2 KGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFN 61
Query: 1789 LYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLL 1848
L + + +L+ + + G ST + L+ L ++P+ VI E+R LAKL
Sbjct: 62 LSSTKQLQTILFEKQGIKPLKKTPGGAP--STSEEVLEELALDYPLPKVILEYRGLAKLK 119
Query: 1849 NCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIY 1908
+ + + ++ + +H + Q TATGRLS +PNLQ + E
Sbjct: 120 STYTDKLPLM----INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR----- 170
Query: 1909 GGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968
R FI E++++++ADYSQIELR+MAH S+D L+ D+
Sbjct: 171 ------------IRQAFIAP-EDYVIVSADYSQIELRIMAHLSRDKGLLTAF-AEGKDIH 216
Query: 1969 TMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSS 2028
AA G ++V S++R K + +G++YGM L+ QLN EA++ + +
Sbjct: 217 RATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFER 276
Query: 2029 FPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAAD 2088
+PGV ++ + ++GYVE+L GR+ +L IK N ++ A+R A+N+ QG+AAD
Sbjct: 277 YPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAAD 336
Query: 2089 IIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSL 2148
IIK AMI + + + Q + R R+++QVHDELV EV +
Sbjct: 337 IIKRAMIAVDAWL---------------QAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQ 381
Query: 2149 VQKCMESAALLLVPLLVKIQVGSTWG 2174
+ + ME+ L VPLLV++ G W
Sbjct: 382 IHQLMENCTRLDVPLLVEVGSGENWD 407
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 408 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Score = 267 bits (683), Expect = 1e-79
Identities = 152/440 (34%), Positives = 225/440 (51%), Gaps = 40/440 (9%)
Query: 1735 LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAAD 1794
L+ +E PL ++LA+ME G+ VD + Q L ++L +E++ Y LAG +F++ +
Sbjct: 6 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQ 65
Query: 1795 IANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGS 1854
+ +L+ L+LP+ + G L+ L H IV I +R L KL + +
Sbjct: 66 LGVILFEKLQLPVLKKTKTGYST---SADVLEKLAPYHEIVENILHYRQLGKLQSTYIEG 122
Query: 1855 ICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEV 1914
+ + + T+K +H + Q T TGRLS EPNLQ + +E
Sbjct: 123 LLKV--VRPDTKK--VHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR------------ 166
Query: 1915 DHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAAR 1974
R F+PS+ +W++ AADYSQIELR++AH ++D L+ + D+ T A
Sbjct: 167 -----KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRR-DLDIHTKTAMD 220
Query: 1975 WTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVAS 2034
SED V R Q K + +GI+YG+ L++ LN S EA E I+ + SFPGV
Sbjct: 221 IFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKR 280
Query: 2035 WLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAM 2094
++ V QKGYV +L R+R+L I N +S A+R A+N+ QGSAADIIK AM
Sbjct: 281 YMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAM 340
Query: 2095 INIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCME 2154
I+++ A + + + LLLQVHDEL+LE ++ LV + ME
Sbjct: 341 IDLN---------------ARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVME 385
Query: 2155 SAALLLVPLLVKIQVGSTWG 2174
A L VPL V GSTW
Sbjct: 386 QAVTLRVPLKVDYHYGSTWY 405
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} Length = 409 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Score = 239 bits (611), Expect = 5e-70
Identities = 141/447 (31%), Positives = 218/447 (48%), Gaps = 41/447 (9%)
Query: 1729 EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFS 1788
E L+ +E PL VLA ME G+ +D+ + +++ LE + + LAG F+
Sbjct: 2 ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFN 61
Query: 1789 LYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLL 1848
L + + VL+ L LP G + ST L+ LR HPIV I ++R L KL
Sbjct: 62 LNSRDQLERVLFDELGLP-AIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLK 120
Query: 1849 NCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIY 1908
+ + + L I T + LH + QT+TATGRLS +PNLQ +
Sbjct: 121 STYIDPLPDL--IHPRTGR--LHTRFNQTATATGRLSSSDPNLQNIPVR----------- 165
Query: 1909 GGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968
++E W+L+A DYSQIELR++AH S D LI + + D+
Sbjct: 166 -------TPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF-QEGRDIH 217
Query: 1969 TMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSS 2028
T A+ G ++V R K + +G+LYGM + LS++L EA+ I+ + S
Sbjct: 218 TETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS 277
Query: 2029 FPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAAD 2088
FP V +W+ + ++GYVE+L GR+R++ ++ + A+R A N QG+AAD
Sbjct: 278 FPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAAD 337
Query: 2089 IIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSL 2148
++K+AM+ + ++ + R+LLQVHDELVLE + L
Sbjct: 338 LMKLAMVKLFP-----------------RLEEMGARMLLQVHDELVLEAPKERAEAVARL 380
Query: 2149 VQKCMESAALLLVPLLVKIQVGSTWGS 2175
++ ME L VPL V++ +G W S
Sbjct: 381 AKEVMEGVYPLAVPLEVEVGIGEDWLS 407
|
| >d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 494 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: T7 phage DNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Score = 156 bits (395), Expect = 1e-40
Identities = 80/453 (17%), Positives = 144/453 (31%), Gaps = 50/453 (11%)
Query: 1735 LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYT-LAGMKFSLYTAA 1793
I+ P V + + Y+ YT + + F+ +
Sbjct: 76 YPRIKTPKVGGIFKKPKNKAQREGR-----EPCELDTREYVAGAPYTPVEHVVFNPSSRD 130
Query: 1794 DIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHP----IVPVIKEHRTLAKLLN 1849
I L +P P D L+ +R + P + +IKE+ + K +
Sbjct: 131 HIQKKLQEAGWVPTKYTDKG---APVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIG 187
Query: 1850 CTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYG 1909
+ + R K HG TGR + PNL + +
Sbjct: 188 QSAEGDKAWLRYVAEDGKI--HGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGE------ 239
Query: 1910 GNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFT 1969
+ + + W+ D S +ELR +AHF
Sbjct: 240 ---QCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMAR-------FDNGEYAHE 289
Query: 1970 MIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSF 2029
++ +++ + RD K IYG LYG G + + + KE K F +
Sbjct: 290 ILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENT 349
Query: 2030 PGVASWL----HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGS 2085
P +A+ V S + +K ++R++ K ++ A+N++ Q +
Sbjct: 350 PAIAALRESIQQTLVESSQWVAGEQQVKWKRRWI--KGLDGRKVHVRSPHAALNTLLQSA 407
Query: 2086 AADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEA 2145
A I K+ +I ++V K G + VHDE+ + I +
Sbjct: 408 GALICKLWIIKTEEMLVEKGLK---------HGWDGDFAYMAWVHDEIQVGCRTEEIAQV 458
Query: 2146 V-SLVQKCMESAALLL---VPLLVKIQVGSTWG 2174
V Q+ M L + ++G W
Sbjct: 459 VIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWA 491
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (314), Expect = 6e-33
Identities = 71/212 (33%), Positives = 99/212 (46%), Gaps = 23/212 (10%)
Query: 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSR 789
PVPL E + + EL +E V E VL+F S+R
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFST----------SRRVKFEELVEECVAENGGVLVFESTR 50
Query: 790 KGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYH 849
+G E TA +S K+ N + L + L E + G A+H
Sbjct: 51 RGAEKTAVKLSAITAKYVENEGLEKA----------ILEENEGEMSRKLAECVRKGAAFH 100
Query: 850 HAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI---GRDFIDGTR 906
HAGL +R VVE +R+G ++V+ AT TLAAGVNLPARRVI R I +
Sbjct: 101 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSE 160
Query: 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938
Y+QMAGRAGR G+D +GE+++I + + +
Sbjct: 161 YKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 192
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 198 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 113 bits (284), Expect = 8e-29
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 1151 RVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYD 1210
AL L ++E E+C + +A G ++ + E A ++ ++ E +G
Sbjct: 68 WFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS 127
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
+ R+ GV+ E++EL I ++ RAR LY AG+R I
Sbjct: 128 VS----GLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIG 183
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 103 bits (257), Expect = 2e-25
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 28/226 (12%)
Query: 504 DLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILML 563
+L+ + S I K+ GI +L+P Q E + V +NL+ T+AGK+ +AE+ M+
Sbjct: 5 ELAESISSYAVGILKEEGIEELFPPQAEAVEK--VFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 564 RRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCT 623
R I GK +V P ++ EK E + + R S + D + V T
Sbjct: 63 REAIKGGKSLYVV-PLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTT 121
Query: 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683
EKA+SL+ + + +V+DE+H++ + RG LE+L+TK+R
Sbjct: 122 SEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR----------- 168
Query: 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFR 729
L+++G+SAT PNV +A+WL A Y +++R
Sbjct: 169 ------------MNKALRVIGLSATAPNVTEIAEWLDADYYVSDWR 202
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 53.7 bits (129), Expect = 2e-09
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 950 SCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCH 1009
S L + + H L ++ G +T E++ + T + + +R L +
Sbjct: 4 SKLGVETHLRFH-SLSIICDGYAKTLEELEDFFADTFFFKQN-EISLSYELERVVRQLEN 61
Query: 1010 RKFLEWNEDTKLYSTTPLGRAA 1031
+ + T LG
Sbjct: 62 WGMVVEAAH---LAPTKLGSLV 80
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 55.5 bits (133), Expect = 1e-08
Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 33/207 (15%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
L I + + +G K Q++ + + + N+V A T +GK+ I ++ +
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPL-FLNDEYNIVAQARTGSGKTASFAIPLIELVNE 69
Query: 569 TGKMALLVLPYVSICAEKAEH-LEVLLEPLGRHVRSYYGNQGGG---SLPKDTSVAVCTI 624
+ ++L A + +E L + YG + K+ ++ V T
Sbjct: 70 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTP 129
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684
+ +NR L + ++DE + + +E +L
Sbjct: 130 GRILDHINR--GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------- 174
Query: 685 ENSGTSSGKADPAHGLQIVGMSATMPN 711
+I+ SATMP
Sbjct: 175 -------------KDKRILLFSATMPR 188
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 53.8 bits (128), Expect = 1e-07
Identities = 46/379 (12%), Positives = 83/379 (21%), Gaps = 98/379 (25%)
Query: 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599
++R + AGK+ ++R I G L++ P + AE E L
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEAL-------RG 60
Query: 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659
Y V + R+L R+ +I++DE H +
Sbjct: 61 LPIRYQTPAIRAEHTGREIVDLMCHAT---FTMRLLSPIRVPNYNLIIMDEAHFTDPASI 117
Query: 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWL 719
+ + M+AT P
Sbjct: 118 AARGYISTRVEM--------------------------GEAAGIFMTATPP-------GS 144
Query: 720 QAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEG 779
+ ++N + E I + V
Sbjct: 145 RDPFPQSNAPIMDEEREI--------------------------PERSWNSGHEWVTDFK 178
Query: 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839
+ F S K A + K + S + + D
Sbjct: 179 GKTVWFVPSIKAGNDIAACLRK--NGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTD---- 232
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899
G + V++ V + + R ++ +
Sbjct: 233 --------ISEMGANFKAERVIDPRRCMKPVIL----------TDGEERVILAGPMPVTH 274
Query: 900 DFIDGTRYRQMAGRAGRTG 918
Q GR GR
Sbjct: 275 S-----SAAQRRGRVGRNP 288
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.6 bits (125), Expect = 1e-07
Identities = 25/199 (12%), Positives = 62/199 (31%), Gaps = 22/199 (11%)
Query: 517 YKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576
+ ++ + + Q +L++ + A T GK+ + L + + ++
Sbjct: 36 FFRKCVGEPRAIQKMW--AKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR-CYVI 92
Query: 577 LPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLV--NRM 634
P + + AE + E G + G G ++ + + ++ +
Sbjct: 93 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQF 152
Query: 635 LEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSG 692
L + L I +D++ + ++ L L Y +
Sbjct: 153 LSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDL--------------KTKS 198
Query: 693 KADPAHGLQIVGMSATMPN 711
A G ++ +AT
Sbjct: 199 WVGEARG-CLMVSTATAKK 216
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 50.5 bits (119), Expect = 4e-07
Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 37/227 (16%)
Query: 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578
+R + + +Q + N + T GK+ +A ++ RL G L++ P
Sbjct: 4 RRDLIQPRIYQEVIYAK---CKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEG 638
+ + AE L + + G + K + A + ++ N +L
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 120
Query: 639 -RLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPA 697
L ++ +IV DE H + +
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA-------------------------- 154
Query: 698 HGLQIVGMSATMPN----VAAVADWLQAALYE--TNFRPVPLEEYIK 738
++G++A+ + + V + L E + P + Y+K
Sbjct: 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSP-DVRPYVK 200
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 42/174 (24%)
Query: 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599
+ V AGK+ +L L++ P + +E E L
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHT 65
Query: 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV---AD 656
S +G+ V +L RMLE R+ +I++DE H + +
Sbjct: 66 QAFSAHGSGR----------EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASI 115
Query: 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP 710
RG+ + M+AT P
Sbjct: 116 AARGWAAHRARAN-----------------------------ESATILMTATPP 140
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 61 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 41.2 bits (97), Expect = 4e-05
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKI 1292
+ +P V + A L +AG T AIA AS E+ + + I+E A KI
Sbjct: 3 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEV-----AGISEG-------TALKI 50
Query: 1293 KNGARKIV 1300
ARK
Sbjct: 51 IQAARKAA 58
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 60 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 40.9 bits (96), Expect = 4e-05
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKI 1292
LT +P V S A L +AG + IA A++ E+ I+E A K+
Sbjct: 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDI-----EGISEK-------AAAKM 48
Query: 1293 KNGARKIV 1300
GAR +
Sbjct: 49 IMGARDLC 56
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 44.1 bits (103), Expect = 1e-04
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 7/152 (4%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583
++ P + V L R + TSAG+S + +L L + L+++P ++
Sbjct: 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALT 170
Query: 584 AEKAEHL-EVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642
+ A+ + L + G D V V T + +
Sbjct: 171 TQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQ----- 225
Query: 643 IGIIVIDELHMV-ADQNRGYLLELLLTKLRYA 673
G+++ DE H+ + L ++
Sbjct: 226 FGMMMNDECHLATGKSISSIISGLNNCMFKFG 257
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 37/216 (17%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
L I + + P Q + L+ R+++ CA T +GK+ I ++ L+
Sbjct: 28 LDPTIRNNILLASYQRPTPIQKNAIPAI--LEHRDIMACAQTGSGKTAAFLIPIINHLVC 85
Query: 569 TGKM-----------ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT 617
L++ P + + + YG S ++
Sbjct: 86 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV 145
Query: 618 SVAVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAG 675
+ + + +E+ + L IV+DE + D + ++ + +G
Sbjct: 146 QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG 205
Query: 676 EGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711
Q + SAT P
Sbjct: 206 ----------------------INRQTLMFSATFPK 219
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 43.4 bits (102), Expect = 2e-04
Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 44/161 (27%)
Query: 762 GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINV---HSSDSEFI 818
G+ P + + EV++ G LIFC S+K C+ ++ L IN +
Sbjct: 20 GEIPFYGKAIPLEVIKGG-RHLIFCHSKKKCD----ELAAKLVALGINAVAYYRGLD--- 71
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
V + V + + T G + +T
Sbjct: 72 -------------------------VSVIPTSGDVVVVATDALMT-GFTGDFDSVIDCNT 105
Query: 879 LAAG---VNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGR 916
+L I + +D + Q GR GR
Sbjct: 106 CVTQTVDFSLDPTFTI-ETTTLPQDAVS---RTQRRGRTGR 142
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 41.8 bits (97), Expect = 5e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP-ARRVI-FRQPRIGRDF 901
+ GL+ E++++ + +G VL ATS G+++P V+ +
Sbjct: 194 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP----- 248
Query: 902 IDGTRYRQMAGRAGRTG 918
R Q GR GR
Sbjct: 249 -SAIRSIQRRGRTGRHM 264
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.5 bits (94), Expect = 0.001
Identities = 21/185 (11%), Positives = 45/185 (24%), Gaps = 63/185 (34%)
Query: 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSA 823
+ + I L + + G +I+ + + E +
Sbjct: 10 NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKF-------------------- 49
Query: 824 IDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST----L 879
G+ ++ + +G + L T+ L
Sbjct: 50 --------------------------RIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTL 83
Query: 880 AAGVNLP--ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937
G++LP R + F+ +R + +L V +I
Sbjct: 84 VRGLDLPERIRFAV---------FVGCPSFRVTIEDIDSLS--PQMVKLLAYLYRNVDEI 132
Query: 938 MGLLN 942
LL
Sbjct: 133 ERLLP 137
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 38.7 bits (89), Expect = 0.002
Identities = 23/164 (14%), Positives = 38/164 (23%), Gaps = 40/164 (24%)
Query: 545 VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY 604
A T +GKS + G L++ P V+ ++
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYM-----------SKA 56
Query: 605 YGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLE 664
+G T I + II+ DE H D +
Sbjct: 57 HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHST-DATSILGIG 115
Query: 665 LLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708
+L + A +V +AT
Sbjct: 116 TVLDQAETAG------------------------ARLVVLATAT 135
|
| >d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Xanthine oxidase, N-terminal domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (85), Expect = 0.003
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 381 LDFLFEDKNLKGTKPGCGAADTSEAMMFRDGVVSEKGSVTHKSCQ 425
L +L L+GTK GCG + + + H S
Sbjct: 25 LAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSAN 69
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2191 | |||
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 100.0 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 100.0 | |
| d1x9ma2 | 494 | T7 phage DNA polymerase {Bacteriophage T7 [TaxId: | 100.0 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.95 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.93 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.92 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.91 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.9 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.89 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.87 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.8 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.78 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.77 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.73 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.73 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.72 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.71 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.7 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.69 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.67 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.66 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.65 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.54 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.53 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 99.52 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.48 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 99.46 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.46 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.43 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.43 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.41 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.36 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.33 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.31 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 99.25 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.17 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.16 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.14 | |
| d2hbka2 | 292 | Exosome complex exonuclease RRP6 {Baker's yeast (S | 99.11 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.82 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 98.68 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 98.62 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 98.6 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.46 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.42 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.41 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.35 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 98.18 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.15 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.07 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 97.99 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.5 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.47 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.15 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.05 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.98 | |
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 96.95 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 96.63 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.24 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 96.08 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 95.75 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 95.67 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 95.56 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.42 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.34 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 95.29 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 95.11 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.8 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.59 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 94.4 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.3 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.29 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 93.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.79 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.94 | |
| d1u9la_ | 68 | Transcription elongation protein NusA {Escherichia | 92.83 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 92.61 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.38 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.3 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.28 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 86.47 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 85.54 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.44 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.31 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.49 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.38 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.1 | |
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 83.03 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 83.02 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.83 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.06 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 81.94 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.82 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 80.62 | |
| d1qtma1 | 130 | Exonuclease domain of prokaryotic DNA polymerase { | 80.3 |
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-85 Score=827.42 Aligned_cols=409 Identities=34% Similarity=0.527 Sum_probs=384.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCC
Q 000107 1729 EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIP 1808 (2191)
Q Consensus 1729 ~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~ 1808 (2191)
++++++|.++|||++++|++||.+||+||++.++++.+.+.++++++++++++++|.+||++||+||+++||+++|+|++
T Consensus 2 ~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~~ 81 (410)
T d1kfsa2 2 KGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPL 81 (410)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCC
Q 000107 1809 EGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEE 1888 (2191)
Q Consensus 1809 ~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~ 1888 (2191)
.. +.+++++|++++|+.+...||++++|++||++.|+++||++.+.... ...+||||++|+|+||.|||+||++
T Consensus 82 ~~--t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~----~~~~gri~~~~~~~gt~TGR~s~s~ 155 (410)
T d1kfsa2 82 KK--TPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMI----NPKTGRVHTSYHQAVTATGRLSSTD 155 (410)
T ss_dssp CC--CC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGB----CTTTSSBCCEEESSCCSSSCCEEES
T ss_pred cc--CCCCCcccchhhhhccccccHHHHHHHHHHHHHHHHHHhhhhhhhcc----CCCCCceeeeEeeccceeccccccC
Confidence 54 34556899999999999999999999999999999999988764332 2458999999999999999999999
Q ss_pred CCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHH
Q 000107 1889 PNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968 (2191)
Q Consensus 1889 PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih 1968 (2191)
|||||+|+. ...|+ .+|++|+|+ +||+||.|||||||+||+||+|+|+.|+++|++ |.|+|
T Consensus 156 pnlQn~P~~------~~~~~-----------~iR~~fia~-~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~-g~D~h 216 (410)
T d1kfsa2 156 PNLQNIPVR------NEEGR-----------RIRQAFIAP-EDYVIVSADYSQIELRIMAHLSRDKGLLTAFAE-GKDIH 216 (410)
T ss_dssp SCGGGSCSS------SHHHH-----------HHHTTBBCC-TTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHT-TCCHH
T ss_pred cccccCCCC------Cccch-----------hhhheEecC-CCCEEEEechhhCchhheeeeEecccHHHHHhc-ccchH
Confidence 999999963 22333 699999997 999999999999999999999999999999998 89999
Q ss_pred HHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCe
Q 000107 1969 TMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGY 2048 (2191)
Q Consensus 1969 ~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~Gy 2048 (2191)
+.+|+.|||+|+++|++++|+.||+++||++||||+.+||+++|+|.+||+.++++|+++||+|.+|++++++.|+++||
T Consensus 217 ~~~A~~~~~~~~~~~~~~~R~~aK~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~ 296 (410)
T d1kfsa2 217 RATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGY 296 (410)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSE
T ss_pred hhhHHHHcCCCchhcccchhhhhhheeeehhhcccHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEE
Q 000107 2049 VESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQ 2128 (2191)
Q Consensus 2049 V~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlq 2128 (2191)
|+|++||||++|++.+.+...|...+|+|+|++||||||||+|.||+++++.+... +.++++|+|
T Consensus 297 v~t~~Grr~~~~~~~~~~~~~r~~~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~---------------~~~~~~v~~ 361 (410)
T d1kfsa2 297 VETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAE---------------QPRVRMIMQ 361 (410)
T ss_dssp EECTTCCEEECTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------CCSEEEEEE
T ss_pred eecccCccccCCCcccchHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhc---------------CCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999998753 457899999
Q ss_pred ecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2129 VHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2129 VHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|||||++|||++.+++++++|+++|++++.|.|||.|++++|+||||+|
T Consensus 362 VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~~~g~~w~e~h 410 (410)
T d1kfsa2 362 VHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH 410 (410)
T ss_dssp ETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEEEEESBHHHHC
T ss_pred eceeeEEEEcHHHHHHHHHHHHHHHhccccCCCceEeeccccCChHHhC
Confidence 9999999999999999999999999999999999999999999999987
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=100.00 E-value=4.2e-83 Score=807.04 Aligned_cols=405 Identities=38% Similarity=0.549 Sum_probs=378.8
Q ss_pred HHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCC
Q 000107 1733 EALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812 (2191)
Q Consensus 1733 ~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~ 1812 (2191)
++|.++|||++++|++||.+||+||.++++++...++++++++++++++++|.+|||+||+|++++||++||+|++..
T Consensus 4 ~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~~-- 81 (408)
T d2hhva2 4 RLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKK-- 81 (408)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCB--
T ss_pred HHHHHHHHHHHHHHHHHHHhCeEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCc--
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCcc
Q 000107 1813 KGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892 (2191)
Q Consensus 1813 k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQ 1892 (2191)
++++.++++..+..+...||++..|++||++.|++++|+..+..... ..+||||++|+|+||.|||+||++||+|
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~----~~~gRih~~~~~~gt~TGR~s~~~Pnlq 156 (408)
T d2hhva2 82 -TKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVR----PDTKKVHTIFNQALTQTGRLSSTEPNLQ 156 (408)
T ss_dssp -CSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSC----TTTCEECCEEESSCCSSSCCEEESSCTT
T ss_pred -CCCCcccchhhHHHhhhhhhHHHHHHHHHHHHHHHHhhhcchhheec----CCCCeECCeeeccCccccccccCccccc
Confidence 34456889999999999999999999999999999999988866543 3469999999999999999999999999
Q ss_pred ccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHH
Q 000107 1893 CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIA 1972 (2191)
Q Consensus 1893 NiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~A 1972 (2191)
|+|+... .+. .+|++|+++++||+||++||||||+|||||||+|+.|+++|++ |.|+|+.+|
T Consensus 157 n~p~~~~------~~~-----------~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~-g~D~h~~~a 218 (408)
T d2hhva2 157 NIPIRLE------EGR-----------KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRR-DLDIHTKTA 218 (408)
T ss_dssp CCCCSSH------HHH-----------GGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHT-TCCHHHHHH
T ss_pred cCCCccc------ccc-----------hhhhhheeecCCceEEEeccccchHHHHHHHhCCHHHHHHHHh-hhhhhhhhh
Confidence 9997422 222 3555554445999999999999999999999999999999998 899999999
Q ss_pred HHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcc
Q 000107 1973 ARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESL 2052 (2191)
Q Consensus 1973 a~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl 2052 (2191)
+.+|+++.+++++++|+.||+++||++||||+.+|+..++++.+||+.++++|+++||+|.+|++++...|+++|||+|+
T Consensus 219 ~~~~~~~~~~~~~~~R~~aK~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~ 298 (408)
T d2hhva2 219 MDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTL 298 (408)
T ss_dssp HHHHTCCGGGCCHHHHHHHHHHHHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECT
T ss_pred hhhcCCCHHHcCchHHHHHHHHhhchhhccccccccccccccHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecce
Q 000107 2053 KGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDE 2132 (2191)
Q Consensus 2053 ~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDE 2132 (2191)
+|||||+|++.+.+...|+.++|+|+|++||||||||+|.||+++++.+... +.+++||+|||||
T Consensus 299 ~grrr~~p~~~~~~~~~r~~~~r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~---------------~~~~~lv~~VHDE 363 (408)
T d2hhva2 299 LHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEE---------------RLQAHLLLQVHDE 363 (408)
T ss_dssp TCCEEECGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSCEEEEECSSE
T ss_pred CCCeecCCccccccHhHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc---------------CCCCEEEEEeeee
Confidence 9999999999999999999999999999999999999999999999998764 4578999999999
Q ss_pred eeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2133 LVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2133 Lv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|++|||++++++++.+|+++|+++..|.|||.|++++|+||||++
T Consensus 364 iv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~iG~~W~e~k 408 (408)
T d2hhva2 364 LILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 408 (408)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEEESSTTTCC
T ss_pred eEEEECHHHHHHHHHHHHHHHhcCcCCCCeEEeecccCCChHHcC
Confidence 999999999999999999999999999999999999999999986
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=2.1e-82 Score=801.23 Aligned_cols=408 Identities=35% Similarity=0.522 Sum_probs=385.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCC
Q 000107 1729 EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIP 1808 (2191)
Q Consensus 1729 ~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~ 1808 (2191)
++|+.+|.+||||++.+|++||.+||+||.+.++++...+.++++++++++++++|.+||++||+|++++||++|||++.
T Consensus 2 ~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~~ 81 (409)
T d1qtma2 2 ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAI 81 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHhCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHcCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCC
Q 000107 1809 EGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEE 1888 (2191)
Q Consensus 1809 ~~~~k~k~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~ 1888 (2191)
.. .+.+++++|++++|+.+...||++.+|++||++.|++++|++.+..+. ...+||||++|+|++|+|||+||++
T Consensus 82 ~~-~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~----~~~~grih~~~~~~gt~TGR~ss~~ 156 (409)
T d1qtma2 82 GK-TEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLI----HPRTGRLHTRFNQTATATGRLSSSD 156 (409)
T ss_dssp CB-CTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGB----CTTTSEECCEEESSCCSSSCCEEES
T ss_pred cc-cccCCCcccchhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCceeccccccccccccccccc
Confidence 53 344567899999999999999999999999999999999998775443 2568999999999999999999999
Q ss_pred CCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHH
Q 000107 1889 PNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968 (2191)
Q Consensus 1889 PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih 1968 (2191)
||+||+|+... . ...+|++|+|+ +||+||+|||||||+|||||||+|+.|+++|++ |.|+|
T Consensus 157 pnlq~~p~~~~------~-----------~~~~R~~f~a~-~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~-g~D~~ 217 (409)
T d1qtma2 157 PNLQNIPVRTP------L-----------GQRIRRAFIAE-EGWLLVALDYSQIELRVLAHLSGDENLIRVFQE-GRDIH 217 (409)
T ss_dssp SCCSSCCCSSH------H-----------HHHHHTTEECC-TTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHT-TCCHH
T ss_pred chhhccccchh------h-----------hhhhcccccCC-CCcEEEEecccccceeeEEEeccCccccceecc-Cccch
Confidence 99999996321 1 12689999997 999999999999999999999999999999998 89999
Q ss_pred HHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCe
Q 000107 1969 TMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGY 2048 (2191)
Q Consensus 1969 ~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~Gy 2048 (2191)
+.+|+.+|+++.++|++.+|+.||+++||++||||+.+|+.+++++.+||+.++++|+.+||++++|++.++..+++.||
T Consensus 218 ~~~a~~~~~~~~~~v~~~~R~~aK~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~ 297 (409)
T d1qtma2 218 TETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGY 297 (409)
T ss_dssp HHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSE
T ss_pred hhhhhhhcCccceeechhHhhhHHhhhcccccCcchhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEE
Q 000107 2049 VESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQ 2128 (2191)
Q Consensus 2049 V~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlq 2128 (2191)
|+|++||+|++|.+...+...++.++|+++|++||||||||+|.||+++++.+... ++++|+|
T Consensus 298 v~t~~Gr~~~~~~~~~~~~~~~~~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~-----------------~~~iv~~ 360 (409)
T d1qtma2 298 VETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEM-----------------GARMLLQ 360 (409)
T ss_dssp EECTTCCEEECGGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------TCEEEEE
T ss_pred eecccccccccccccchhhhhhhhhhhhceeeeehHHHHHHHHHHHHHHHHHHHhc-----------------CCEEEEE
Confidence 99999999999999999999999999999999999999999999999999998763 5789999
Q ss_pred ecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2129 VHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2129 VHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|||||++|||++.+++++++++++|+++..+.|||.|+++||+||||++
T Consensus 361 VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~ig~~W~e~k 409 (409)
T d1qtma2 361 VHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAK 409 (409)
T ss_dssp CSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEEEESBHHHHC
T ss_pred ecceeEEEECHHHHHHHHHHHHHHHhhcccCCCCEEeeeeecCChHHcC
Confidence 9999999999999999999999999999999999999999999999975
|
| >d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: T7 phage DNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=5e-71 Score=713.01 Aligned_cols=402 Identities=20% Similarity=0.258 Sum_probs=346.4
Q ss_pred hhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------
Q 000107 1737 NIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAG-------------------------------- 1784 (2191)
Q Consensus 1737 ~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G-------------------------------- 1784 (2191)
.+|+++..+|++||.+||+||.+.+..+..++.+++.++++++++..+
T Consensus 5 ~lEh~va~il~~qE~~G~~~D~~~a~~L~~el~~~~~el~~eL~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (494)
T d1x9ma2 5 DIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKV 84 (494)
T ss_dssp HHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEECSCCBCCBCTTTCCBCTTSCCBBCCSS
T ss_pred HHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhccccccchhhhhccccc
Confidence 689999999999999999999999999999999999999999987431
Q ss_pred -------------------------------------CcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHH
Q 000107 1785 -------------------------------------MKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827 (2191)
Q Consensus 1785 -------------------------------------~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~ 1827 (2191)
.+|||+||+|++++||+ +|+.|.. +|.+++|+|++++|+.
T Consensus 85 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~FN~~S~~Qi~~~L~~-~g~~p~~--~t~~g~~~~~~~~L~~ 161 (494)
T d1x9ma2 85 GGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQE-AGWVPTK--YTDKGAPVVDDEVLEG 161 (494)
T ss_dssp CCSBC-------------CCBCCCSBCTTCCBEEEEEECCCTTCHHHHHHHHHH-TTCCCCC--BCTTSCBCCSHHHHHH
T ss_pred cccccccccchhhhhhhhhhhhhhhhhcCCceeeeccccCCCCCHHHHHHHHHH-hCCcccc--ccccCcccccHHHHhh
Confidence 24899999999999997 5666544 4556789999999999
Q ss_pred hhhcCC----cHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccc
Q 000107 1828 LRHEHP----IVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMS 1903 (2191)
Q Consensus 1828 L~~~hp----i~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~ 1903 (2191)
+...|| ++.+|++||.+.|++++|...+..+... .+.|||||++|+|+||+|||+||++|||||||+ .+
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~dgri~~~~~~~~t~TGR~s~~~pnlqnip~-----~~ 234 (494)
T d1x9ma2 162 VRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRY--VAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPG-----VR 234 (494)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHH--CCTTSEECCEEETTCSTTSCCEEESSCTTCCCC-----TT
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhh--hccccceeeeeeccccccCcccccccccccCCc-----cc
Confidence 987775 6778999999999999998776655542 356899999999999999999999999999996 33
Q ss_pred cccccCCCccccccccccccccccc-------CCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHc
Q 000107 1904 NEDIYGGNAEVDHCKINARDFFIPS-------QENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT 1976 (2191)
Q Consensus 1904 ~~~g~~~~~~~~~~~~~iR~~Fi~~-------~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~ 1976 (2191)
++.|+ .+|++|+|+ .+||+|+++|||||||||||||+ ++|+. |.|+|..+|+.++
T Consensus 235 ~~~~~-----------~~r~~f~~~~~~~~~~~~g~~l~~~D~sqiElRvlA~~~------~~~~~-~~d~~~~~~~~~~ 296 (494)
T d1x9ma2 235 SPYGE-----------QCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFM------ARFDN-GEYAHEILNGDIH 296 (494)
T ss_dssp STTHH-----------HHHHTBSGGGSBCTTTCCBCEEEEEEETTHHHHHHHHHH------HHHHT-THHHHHHHHSCHH
T ss_pred ccccc-----------cccccccccccccccCCCCeEEEEehhhcccHHHHHHHH------Hhhhh-hhhHHHhhhhhhc
Confidence 34454 799999985 38999999999999999999975 46887 8999999999999
Q ss_pred CCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHH----HhcCeEEcc
Q 000107 1977 GRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSC----HQKGYVESL 2052 (2191)
Q Consensus 1977 g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a----~~~GyV~Tl 2052 (2191)
+++.+.+++++|+.||++|||++||||+++||+++|++.+||+.++++|+++||+|++|++.+.+.+ +..||++|+
T Consensus 297 ~~~~~~~~~~~R~~aK~~~fg~~YG~g~~~la~~~~~~~~eA~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~t~ 376 (494)
T d1x9ma2 297 TKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQV 376 (494)
T ss_dssp HHHHHHSCCSSHHHHHHHHHHHHTTCCHHHHHTTTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHHTTBC----------C
T ss_pred ccchhhhcccchhhhhhHHHHhhhccchhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999986654 456999999
Q ss_pred cCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecce
Q 000107 2053 KGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDE 2132 (2191)
Q Consensus 2053 ~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDE 2132 (2191)
+|||||+|++++.+. +..++|+|+|++||||||||+|.||+++++.|....-. ..+..+++||+|||||
T Consensus 377 ~grrr~~~~~~~~~~--~~~~~r~a~N~~iQg~~adi~k~a~~~~~~~l~~~~l~---------~~~~~~~~~v~~VHDE 445 (494)
T d1x9ma2 377 KWKRRWIKGLDGRKV--HVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLK---------HGWDGDFAYMAWVHDE 445 (494)
T ss_dssp CBSCSEEECTTSCEE--ECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------BSTTSSEEEEEEETTE
T ss_pred ccceeeeeccCCchh--hhhHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhcch---------hcccCCcEEEEEeccc
Confidence 999999999988654 44678999999999999999999999999999764110 1124578999999999
Q ss_pred eeeeeChhhH-HHHHHHHHHHHhccc---CcccceEEEeeccCCccccC
Q 000107 2133 LVLEVDPSVI-KEAVSLVQKCMESAA---LLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2133 Lv~Evp~~~~-~~v~~~vk~~Me~a~---~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|+||||++++ +.++++++++|+.+. .|.|||.|++++|+||+|+|
T Consensus 446 iv~ev~~~e~~~~~~~~~~~~m~~~~~~~~l~vPl~~e~~~G~~W~e~h 494 (494)
T d1x9ma2 446 IQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWAICH 494 (494)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCSSCCCEEEEEESSTTTTC
T ss_pred cEEEEChHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEeCCccCChHHhC
Confidence 9999998765 567889999999875 58899999999999999987
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1.1e-28 Score=274.39 Aligned_cols=110 Identities=25% Similarity=0.423 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhh
Q 000107 1151 RVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEI 1230 (2191)
Q Consensus 1151 ~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~EL 1230 (2191)
..+.||++|++|.|||+|+|+++|+++|||+||+||+++++|+|+++++.+||+.++|.. |+.|+.||.|||++||
T Consensus 68 ~~l~~~KtAl~L~dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~el 143 (198)
T d2p6ra2 68 WFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEEL 143 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHHH
Confidence 345899999999999999999999999999999999999999999999999999999865 5678999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASIS 1264 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~ 1264 (2191)
++||+|||||++|||+||++||+|++||++|+..
T Consensus 144 l~L~~i~gvgr~rAr~L~~~Gi~t~~dl~~a~~~ 177 (198)
T d2p6ra2 144 LELVRIRHIGRVRARKLYNAGIRNAEDIVRHREK 177 (198)
T ss_dssp HHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTHHH
T ss_pred HhHhcCCCCCHHHHHHHHHcCCCCHHHHHHccHh
Confidence 9999999999999999999999999999998654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.95 E-value=1.9e-27 Score=285.29 Aligned_cols=279 Identities=18% Similarity=0.093 Sum_probs=183.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+.+++++|+.||||||||++|+++++.....++.++||++|+++||.|++++|+.+ +..+.... ........
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~----~~~~~~~~---~~~~~~~~ 77 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGL----PIRYQTPA---IRAEHTGR 77 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTS----CCBCCC-----------CC
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcC----CcceeeeE---EeecccCc
Confidence 467899999999999999999988999888888999999999999999998877543 22221111 11122345
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
..|+++|++.+... +.....+.++++|||||+|++.+++ .....++..+..
T Consensus 78 ~~i~~~t~~~l~~~---~~~~~~~~~~~~vViDE~H~~~~~~--~~~~~~l~~~~~------------------------ 128 (305)
T d2bmfa2 78 EIVDLMCHATFTMR---LLSPIRVPNYNLIIMDEAHFTDPAS--IAARGYISTRVE------------------------ 128 (305)
T ss_dssp CSEEEEEHHHHHHH---HTSSSCCCCCSEEEEESTTCCSHHH--HHHHHHHHHHHH------------------------
T ss_pred cccccCCcHHHHHH---HhcCccccceeEEEeeeeeecchhh--HHHHHHHHHhhc------------------------
Confidence 68999999876443 3355678899999999999987642 222233333322
Q ss_pred CCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
....|+++||||+++.. ..+ ..+..|...... ...... .... .....
T Consensus 129 ~~~~~~v~~SAT~~~~~--------~~~--~~~~~~~~~~~~---~~~~~~-------------~~~~-------~~~~~ 175 (305)
T d2bmfa2 129 MGEAAGIFMTATPPGSR--------DPF--PQSNAPIMDEER---EIPERS-------------WNSG-------HEWVT 175 (305)
T ss_dssp HTSCEEEEECSSCTTCC--------CSS--CCCSSCEEEEEC---CCCCSC-------------CSSC-------CHHHH
T ss_pred cccceEEEeecCCCcce--------eee--cccCCcceEEEE---eccHHH-------------HHHH-------HHHHH
Confidence 24679999999986411 011 111112111110 000000 0000 01123
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..++++||||+++++|+.++..|.+.. +.+..+|+++...
T Consensus 176 ~~~~~~lvf~~~~~~~~~l~~~L~~~~----------------------------------------~~~~~l~~~~~~~ 215 (305)
T d2bmfa2 176 DFKGKTVWFVPSIKAGNDIAACLRKNG----------------------------------------KKVIQLSRKTFDS 215 (305)
T ss_dssp SSCSCEEEECSCHHHHHHHHHHHHHHT----------------------------------------CCCEECCTTCHHH
T ss_pred hhCCCEEEEeccHHHHHHHHHHHHhCC----------------------------------------CCEEEeCCcChHH
Confidence 456899999999999999988886521 1266789998665
Q ss_pred HHHHHHHHhhcCCceEEEecccccccCCCCCceEEe---------ecCCCC------CcccCcccccccccccCCCCCCC
Q 000107 857 EREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF---------RQPRIG------RDFIDGTRYRQMAGRAGRTGIDT 921 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI---------~~p~~g------~~~is~~~y~QmiGRAGR~G~d~ 921 (2191)
+| ..|++|..+++|||+++++|+|++...||. +++.+. ..++|..+|.||+|||||.| .
T Consensus 216 ~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~--~ 289 (305)
T d2bmfa2 216 EY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP--K 289 (305)
T ss_dssp HG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS--S
T ss_pred HH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC--C
Confidence 44 468899999999999999999998766541 122111 13467889999999999999 3
Q ss_pred ceEEEEEeC
Q 000107 922 KGESMLICK 930 (2191)
Q Consensus 922 ~Ge~ill~~ 930 (2191)
.|..++++.
T Consensus 290 ~~~~~~~~~ 298 (305)
T d2bmfa2 290 NENDQYIYM 298 (305)
T ss_dssp CCCEEEEEC
T ss_pred CceEEEEEC
Confidence 444444443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=1.6e-26 Score=262.06 Aligned_cols=196 Identities=33% Similarity=0.564 Sum_probs=164.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 505 LSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 505 L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
+..++|+.+...++++||.+|+|+|.+++.. +++|+|+++++|||+|||++|.++++..+. .++++||++|+++|+.
T Consensus 6 ~~~~~~~~~~~~l~~~g~~~l~~~Q~~ai~~--l~~~~~~il~apTGsGKT~~a~l~i~~~~~-~~~~vl~l~P~~~L~~ 82 (202)
T d2p6ra3 6 LAESISSYAVGILKEEGIEELFPPQAEAVEK--VFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAG 82 (202)
T ss_dssp HHHHHHHHHHHHHHCC---CCCCCCHHHHHH--HTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCCchhHHHHHHHHHHhh-ccCcceeecccHHHHH
Confidence 3445788999999999999999999999987 889999999999999999999999988775 4678999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
|.++++++++.. ..++....|+.... ......+|+++||..+..++++ ....+..+++||+||+|.+.+..|+..+
T Consensus 83 q~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~ii~DE~h~~~~~~r~~~~ 159 (202)
T d2p6ra3 83 EKYESFKKWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATL 159 (202)
T ss_dssp HHHHHHTTTTTT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHH
T ss_pred HHHHHHHHHhhc-cccceeeccCcccccccccccceeeeccHHHHHHHhc--cchhhhhhhhccccHHHHhcccccchHH
Confidence 999999876543 45666666655332 2334678999999999988876 4457888999999999999998899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFR 729 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~R 729 (2191)
+.++.+++.. ++++|+|+||||++|++++++||++.+|.++||
T Consensus 160 ~~~l~~i~~~-----------------------~~~~~~l~lSATl~n~~~~~~~l~~~~~~s~~~ 202 (202)
T d2p6ra3 160 EILVTKMRRM-----------------------NKALRVIGLSATAPNVTEIAEWLDADYYVSDWR 202 (202)
T ss_dssp HHHHHHHHHH-----------------------CTTCEEEEEECCCTTHHHHHHHTTCEEEECCCC
T ss_pred HHHHHHHHhc-----------------------CCCCcEEEEcCCCCcHHHHHHHcCCCeeeCCCC
Confidence 9999999875 356899999999999999999999999988886
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-25 Score=258.40 Aligned_cols=173 Identities=19% Similarity=0.228 Sum_probs=152.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+++.+++.||.+|+|+|.+||+. ++.|+|+++.||||||||++|.+|+++.+.. .+.++++++|+++||.|+
T Consensus 24 L~~~l~~~L~~~g~~~pt~IQ~~aIp~--il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi 101 (222)
T d2j0sa1 24 LREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 101 (222)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHH
Confidence 779999999999999999999999987 9999999999999999999999999998765 355799999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.+..+....++++..++|+..... +..+.+|+|+||+++..++++ ....++++.++|+||+|.+.+.+++..
T Consensus 102 ~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~f~~~ 179 (222)
T d2j0sa1 102 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKGFKEQ 179 (222)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc--cccccccceeeeecchhHhhhcCcHHH
Confidence 99999998888999999888764321 234689999999999998876 556789999999999999999999888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
++.++..+ +...|++++|||+++
T Consensus 180 i~~I~~~l--------------------------~~~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 180 IYDVYRYL--------------------------PPATQVVLISATLPH 202 (222)
T ss_dssp HHHHHTTS--------------------------CTTCEEEEEESCCCH
T ss_pred HHHHHHhC--------------------------CCCCEEEEEEEeCCH
Confidence 88877654 356799999999984
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.3e-25 Score=253.89 Aligned_cols=195 Identities=36% Similarity=0.525 Sum_probs=148.3
Q ss_pred cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccc
Q 000107 730 PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~ 809 (2191)
||||.+++...+.+....... .......+.+++.+.+.+++++||||+||+.|+.+|..|..........
T Consensus 1 PVpL~~~v~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~ 70 (201)
T d2p6ra4 1 PVPLVEGVLCEGTLELFDGAF----------STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVEN 70 (201)
T ss_dssp SSCEEEEEECSSEEEEEETTE----------EEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCEEeEEeCCEEEeccCcc----------hhhhhhhHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhch
Confidence 789998887655443222110 0112234567778888889999999999999999999998876542211
Q ss_pred cCCCCchhhhhHHHHHHh-hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 810 VHSSDSEFIDITSAIDAL-RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 810 ~~~~~~~~~~~~~~~~~L-~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
.. .. +.+ .......+..|.+++.+||++|||||++++|..|++.|++|.++|||||+++++|||+|++
T Consensus 71 -----~~---~~---~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~ 139 (201)
T d2p6ra4 71 -----EG---LE---KAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPAR 139 (201)
T ss_dssp -----SS---HH---HHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBS
T ss_pred -----hH---HH---HHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCc
Confidence 00 11 111 1122234677999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCC---CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH-HHhhhccCC
Q 000107 889 RVIFRQPRI---GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK-IMGLLNESC 945 (2191)
Q Consensus 889 ~VVI~~p~~---g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~-~~~ll~~~l 945 (2191)
+|||..... ...+++..+|+||+|||||.|.|..|.+|+++.+.+.+. +++++.+.+
T Consensus 140 ~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~~~k~~~~~~p 200 (201)
T d2p6ra4 140 RVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEP 200 (201)
T ss_dssp EEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCC
T ss_pred eEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHHHHHHHhccCC
Confidence 999975432 234578899999999999999999999999999877654 667777553
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-24 Score=248.66 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=152.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+++.+.||.+|+|+|.+||+. ++.|+|++++||||||||++|++|+++.+.. .+.++||++|+++||.|+
T Consensus 19 L~~~l~~~L~~~g~~~pt~iQ~~aip~--il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~ 96 (218)
T d2g9na1 19 LSESLLRGIYAYGFEKPSAIQQRAILP--CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 96 (218)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhH
Confidence 789999999999999999999999987 8999999999999999999999999998764 466899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.+..+....+..+...+++..... ....++|+|+||+++..++++ ....++++.++|+||+|++.+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~--~~~~~~~l~~lVlDEaD~ll~~~f~~ 174 (218)
T d2g9na1 97 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFKD 174 (218)
T ss_dssp HHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc--CCcccccceEEEeeecchhhcCchHH
Confidence 99999999988888887777654322 234689999999999999876 55688999999999999999998998
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
.++.++..+ +.+.|++++|||+++ +.+++
T Consensus 175 ~~~~Il~~~--------------------------~~~~Q~il~SAT~~~~v~~~~ 204 (218)
T d2g9na1 175 QIYDIFQKL--------------------------NSNTQVVLLSATMPSDVLEVT 204 (218)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEEESCCCHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEecCCHHHHHHH
Confidence 888887665 356899999999975 34444
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-24 Score=247.12 Aligned_cols=179 Identities=22% Similarity=0.259 Sum_probs=150.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+++++.+.||++|+|+|.+||+. +++|+|++++||||||||++|.+|++.++.. .+..+++++|+++||.|+
T Consensus 10 L~~~l~~~l~~~g~~~pt~iQ~~aip~--il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~ 87 (206)
T d1veca_ 10 LKRELLMGIFEMGWEKPSPIQEESIPI--ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHH--HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHH
Confidence 789999999999999999999999987 9999999999999999999999999988754 456899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.+..+.... +..+...+|+... ..+..+++|+|+||+++..++++ ....++++.++|+||+|.|.+.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~f~~ 165 (206)
T d1veca_ 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQDFVQ 165 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc--hhccccccceEEEeccccccccchHH
Confidence 99998776543 4555566665432 12456789999999999988876 55678999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
.++.++..+ +.+.|++++|||+++ +.++++
T Consensus 166 ~i~~I~~~~--------------------------~~~~Q~~l~SAT~~~~v~~l~~ 196 (206)
T d1veca_ 166 IMEDIILTL--------------------------PKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCEEEEEEecCCHHHHHHHH
Confidence 999888766 356899999999984 344443
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=8.6e-25 Score=248.90 Aligned_cols=178 Identities=21% Similarity=0.269 Sum_probs=150.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC-CeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g-knlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~ 586 (2191)
||+.+++.+.++||.+|+|+|.+||+. ++.| +|+++++|||+|||++|.+++++.... .+.++||++|+++||.|+
T Consensus 11 l~~~l~~~l~~~g~~~pt~iQ~~~ip~--~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~ 88 (208)
T d1hv8a1 11 LSDNILNAIRNKGFEKPTDIQMKVIPL--FLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 88 (208)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhh
Confidence 889999999999999999999999986 7776 599999999999999999999987554 466999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+..+....+.++..++|+..... ..++++|+||||+++..++++ ....+++++++||||+|.+.+.+++..+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~--~~~~~~~l~~lViDEad~l~~~~~~~~i 166 (208)
T d1hv8a1 89 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMGFIKDV 166 (208)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTTTHHHH
T ss_pred hhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHc--CCCCcccCcEEEEEChHHhhcCCChHHH
Confidence 99999999888999998888764211 123689999999999988876 4557899999999999999888888887
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
+.++..+ +++.|+|++|||+++ +.+++
T Consensus 167 ~~I~~~~--------------------------~~~~Q~i~~SAT~~~~v~~~~ 194 (208)
T d1hv8a1 167 EKILNAC--------------------------NKDKRILLFSATMPREILNLA 194 (208)
T ss_dssp HHHHHTS--------------------------CSSCEEEEECSSCCHHHHHHH
T ss_pred HHHHHhC--------------------------CCCCeEEEEEccCCHHHHHHH
Confidence 7776544 356899999999985 34444
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2.9e-24 Score=244.99 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=153.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.++++++++||++|+|+|.+||+. ++.|+|++++||||||||++|.+++++++.. .+..+++++|+++|+.|.
T Consensus 17 l~~~l~~~L~~~g~~~pt~iQ~~aip~--il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~ 94 (212)
T d1qdea_ 17 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 94 (212)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhh
Confidence 789999999999999999999999987 9999999999999999999999999998764 456899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC---CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG---SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~---~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
...+..+....+..+....++.... ...++++|+|+||+++..+++. ....+.+++++|+||+|.+.+.+++..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~--~~~~l~~l~~lVlDEad~lld~~f~~~v 172 (212)
T d1qdea_ 95 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFKEQI 172 (212)
T ss_dssp HHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred hhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCcccccccc--CceecCcceEEeehhhhhhcccchHHHH
Confidence 9999888777777777776654321 1234689999999999998876 5567999999999999999999999888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHh
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWL 719 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL 719 (2191)
+.++..+ ++..|++++|||+++ +.++++++
T Consensus 173 ~~I~~~~--------------------------~~~~Q~vl~SAT~~~~v~~l~~~~ 203 (212)
T d1qdea_ 173 YQIFTLL--------------------------PPTTQVVLLSATMPNDVLEVTTKF 203 (212)
T ss_dssp HHHHHHS--------------------------CTTCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHhC--------------------------CCCCeEEEEEeeCCHHHHHHHHHH
Confidence 8888765 356799999999985 56666654
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-24 Score=243.75 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=147.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.++||++|+|+|.+||+. +++|+|++++||||||||++|.+|+++.+.. .+.++++++|+++||.|+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~--il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi 85 (207)
T d1t6na_ 8 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 85 (207)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHH
Confidence 679999999999999999999999987 9999999999999999999999999988664 345899999999999999
Q ss_pred HHHHHHHhhccC-CeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-ch
Q 000107 587 AEHLEVLLEPLG-RHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NR 659 (2191)
Q Consensus 587 ~~~l~~l~~~lg-~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~R 659 (2191)
.+.++.+...++ +++...+|+..... ....++|+|+||+++..++++ ....++++.++|+||+|.+.+. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~--~~~~l~~l~~lVlDEaD~ll~~~~~ 163 (207)
T d1t6na_ 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM 163 (207)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSHHH
T ss_pred HHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC--CceeccccceeehhhhhhhhhcCCc
Confidence 999998877654 45666777654321 124579999999999998876 4557899999999999998874 45
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHH
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADW 718 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~w 718 (2191)
...++.++..+ +.+.|++++|||+++ ++++++.
T Consensus 164 ~~~i~~I~~~~--------------------------~~~~Q~il~SAT~~~~v~~l~~~ 197 (207)
T d1t6na_ 164 RRDVQEIFRMT--------------------------PHEKQVMMFSATLSKEIRPVCRK 197 (207)
T ss_dssp HHHHHHHHHTS--------------------------CSSSEEEEEESCCCTTTHHHHHT
T ss_pred HHHHHHHHHhC--------------------------CCCCEEEEEeeeCCHHHHHHHHH
Confidence 55555554332 356899999999975 5666554
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.90 E-value=6.3e-24 Score=246.47 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=152.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----------cCCEEEEEc
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----------TGKMALLVL 577 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----------~g~kaL~I~ 577 (2191)
|++.+.+.+.+.||.+|+|+|.+||+. +++|+|++++||||||||++|.+++++++.. .+.++|+++
T Consensus 28 l~~~l~~~L~~~g~~~pt~iQ~~~ip~--il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~ 105 (238)
T d1wrba1 28 LDPTIRNNILLASYQRPTPIQKNAIPA--ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 105 (238)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhh--hhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEec
Confidence 556677788889999999999999987 9999999999999999999999999999864 245799999
Q ss_pred hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 578 P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
|+++||.|+++.+..+....++++..++|+.... ....+++|+||||+++..+++. ....+.++.++||||+|.
T Consensus 106 pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~--~~~~l~~v~~lViDEaD~ 183 (238)
T d1wrba1 106 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADR 183 (238)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHH
T ss_pred cchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHcc--Cceeccccceeeeehhhh
Confidence 9999999999999998888899999888876432 2345689999999999988875 455789999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 654 VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 654 l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
+.+.+++..++.++.+++.. ...+.|+|++|||+++ ++.++
T Consensus 184 ll~~~f~~~i~~Il~~~~~~----------------------~~~~~Q~il~SAT~~~~v~~l~ 225 (238)
T d1wrba1 184 MLDMGFEPQIRKIIEESNMP----------------------SGINRQTLMFSATFPKEIQKLA 225 (238)
T ss_dssp HHHTTCHHHHHHHHHSSCCC----------------------CGGGCEEEEEESSCCHHHHHHH
T ss_pred hhhhccHHHHHHHHHHhcCC----------------------CCCCCEEEEEeeeCCHHHHHHH
Confidence 99988998888887654211 1246799999999974 44444
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2.4e-23 Score=236.46 Aligned_cols=180 Identities=21% Similarity=0.233 Sum_probs=156.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+++.||.+|+|+|.+||+. +++|+|+++.||||||||++|.++++..+.. .+..+++++|+++++.+.
T Consensus 8 L~~~l~~~L~~~g~~~pt~iQ~~aip~--il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (206)
T d1s2ma1 8 LKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 85 (206)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhh
Confidence 779999999999999999999999987 9999999999999999999999999988754 455889999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
...+..+....++++...+|+.... .+...++|+|+||+++..+++. ....+.++.++|+||+|.|.+.+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~lV~DEaD~l~~~~f~~~ 163 (206)
T d1s2ma1 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRDFKTI 163 (206)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred hhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc--ceeecccceEEEeechhhhhhhhhHHH
Confidence 9999998888999999999876432 2456789999999999999876 556789999999999999999888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHH
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADW 718 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~w 718 (2191)
++.++..+ +...|+|++|||+++ +.+++++
T Consensus 164 v~~I~~~l--------------------------~~~~Q~il~SATl~~~v~~~~~~ 194 (206)
T d1s2ma1 164 IEQILSFL--------------------------PPTHQSLLFSATFPLTVKEFMVK 194 (206)
T ss_dssp HHHHHTTS--------------------------CSSCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHhC--------------------------CCCCEEEEEEEeCCHHHHHHHHH
Confidence 88887655 356799999999973 4444443
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.87 E-value=5.9e-22 Score=225.24 Aligned_cols=180 Identities=15% Similarity=0.164 Sum_probs=147.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+++.||++|+|+|.+||+. +++|+|++++||||||||++|.+++++.+... ....++++|++.++.+.
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~--~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (209)
T d1q0ua_ 8 FQPFIIEAIKTLRFYKPTEIQERIIPG--ALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 85 (209)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHH
Confidence 779999999999999999999999987 99999999999999999999999999887653 44789999999999999
Q ss_pred HHHHHHHhhcc----CCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPL----GRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~l----g~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
+..+....... ...+....+.... .....+++|+|+||+++..++++ ....+.++.++||||+|.+.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~--~~~~~~~l~~lViDEad~ll~~~ 163 (209)
T d1q0ua_ 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLDMG 163 (209)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHHTT
T ss_pred HHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhh--hccccccceEEEEeecccccccc
Confidence 98877655443 2344444444321 22446789999999999998876 55678999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHH
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADW 718 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~w 718 (2191)
++..++.++..+ +++.|++++|||+++ +.++++.
T Consensus 164 f~~~v~~I~~~~--------------------------~~~~Q~il~SATl~~~v~~l~~~ 198 (209)
T d1q0ua_ 164 FITDVDQIAARM--------------------------PKDLQMLVFSATIPEKLKPFLKK 198 (209)
T ss_dssp CHHHHHHHHHTS--------------------------CTTCEEEEEESCCCGGGHHHHHH
T ss_pred cHHHHHHHHHHC--------------------------CCCCEEEEEEccCCHHHHHHHHH
Confidence 998888887654 356899999999974 5555543
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.6e-20 Score=210.97 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=132.8
Q ss_pred CcHHHHHHHHHc-CCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 509 LPSEICSIYKKR-GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 509 Lp~~l~~~l~~~-Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
|++.+.+.+++. ||++|+|+|.+|++. ++.|+|+++++|||||||++|.++++. ..+++++++|+++|+.|+.
T Consensus 9 l~~~~~~~l~~~fg~~~~rp~Q~~ai~~--~l~g~~vlv~apTGsGKT~~~~~~~~~----~~~~~~~v~P~~~L~~q~~ 82 (206)
T d1oywa2 9 LESGAKQVLQETFGYQQFRPGQEEIIDT--VLSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQV 82 (206)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHH--HHTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCCHHHHHHHHH--HHcCCCEEEEcCCCCCCcchhhhhhhh----ccCceEEeccchhhhhhHH
Confidence 456788888875 999999999999987 899999999999999999999998875 5789999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCC--------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGG--------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~--------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.++..+. ......+..... ......+|+++||+.+...... .......+++||+||+|++.++++
T Consensus 83 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~--~~~~~~~v~~lviDEaH~~~~~~~ 156 (206)
T d1oywa2 83 DQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL--EHLAHWNPVLLAVDEAHCISQWGH 156 (206)
T ss_dssp HHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH--HHHTTSCEEEEEESSGGGGCTTSS
T ss_pred HHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc--ccchhheeeeeeeeeeeeeecccc
Confidence 98877643 333322222110 0223478999999987554333 334577899999999999998765
Q ss_pred hHHHHH-HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhc
Q 000107 660 GYLLEL-LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQA 721 (2191)
Q Consensus 660 G~~lE~-lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a 721 (2191)
+...+. .+..++.. .+++|+|+||||+++ .+++.+||+-
T Consensus 157 ~~~~~~~~~~~l~~~-----------------------~~~~~ii~lSATl~~~v~~di~~~L~l 198 (206)
T d1oywa2 157 DFRPEYAALGQLRQR-----------------------FPTLPFMALTATADDTTRQDIVRLLGL 198 (206)
T ss_dssp CCCHHHHGGGGHHHH-----------------------CTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHh-----------------------CCCCceEEEEeCCCHHHHHHHHHHcCC
Confidence 544332 22233222 246899999999986 3578999863
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=8.4e-20 Score=211.37 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=126.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
+++.+.+.+ ++++.+|+++|.++++. ++.|+|++++||||+|||+++.++++... ..++++|||+|+++|+.|+++
T Consensus 29 ~~~~~~~~~-~~~~~~p~~~Q~~~i~~--~l~g~~~~i~apTGsGKT~~~~~~~~~~~-~~~~rvliv~Pt~~La~Q~~~ 104 (237)
T d1gkub1 29 LLKEFVEFF-RKCVGEPRAIQKMWAKR--ILRKESFAATAPTGVGKTSFGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAE 104 (237)
T ss_dssp HHHHHHHHH-HTTTCSCCHHHHHHHHH--HHTTCCEECCCCBTSCSHHHHHHHHHHHH-TTSCCEEEEESCHHHHHHHHH
T ss_pred hHHHHHHHH-HhccCCCCHHHHHHHHH--HHCCCCEEEEecCCChHHHHHHHHHHHHH-HhcCeEEEEeccHHHHHHHHH
Confidence 344555544 56888999999999987 89999999999999999999998887654 467899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC----------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS----------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~----------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
++++++..+++.+....+...... ...+++|+|+||+.+.. ....+.++++|||||+|.+.+.+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~------~~~~~~~~~~vVvDE~d~~l~~~ 178 (237)
T d1gkub1 105 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK------HYRELGHFDFIFVDDVDAILKAS 178 (237)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH------CSTTSCCCSEEEESCHHHHHTST
T ss_pred HHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHH------hhhhcCCCCEEEEEChhhhhhcc
Confidence 999998877765433322221111 22357899999997532 23357789999999999988764
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
++ ++.++..+.+...- ...........|+|++|||+++
T Consensus 179 ~~--~~~~~~~~g~~~~~-------------~~~~~~~~~~~~~i~~SAT~~~ 216 (237)
T d1gkub1 179 KN--VDKLLHLLGFHYDL-------------KTKSWVGEARGCLMVSTATAKK 216 (237)
T ss_dssp HH--HHHHHHHTTEEEET-------------TTTEEEECCSSEEEECCCCSCC
T ss_pred cc--hhHHHHhcCChHHH-------------HHHHhhCCCCCeEEEEeCCCCc
Confidence 43 44444433211000 0000112356789999999975
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=9.1e-19 Score=196.77 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=126.7
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
-+|+++|.+++.. + .++|+|+++|||+|||+++.+++...+...++++||++|+++|+.|.++++.+++...+.++.
T Consensus 8 ~~pr~~Q~~~~~~--~-~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (200)
T d1wp9a1 8 IQPRIYQEVIYAK--C-KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (200)
T ss_dssp HCCCHHHHHHHHH--G-GGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCCCHHHHHHHHH--H-hcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhccccccee
Confidence 3799999999975 4 467899999999999999998888777778889999999999999999999999887778887
Q ss_pred EEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 603 SYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 603 ~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.+.++..... ...+.+|+++||+.+..++.. ....++++++||+||+|++.+...... ++..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~vIiDE~H~~~~~~~~~~---~~~~~~~~------ 153 (200)
T d1wp9a1 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYAYVF---IAREYKRQ------ 153 (200)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCHHHH---HHHHHHHH------
T ss_pred eeecccchhHHHHhhhcccccccccchhHHHHhh--hhhhccccceEEEEehhhhhcchhHHH---HHHHHHhc------
Confidence 7666543211 112368999999998877665 455778999999999999886533222 22222221
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhh
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQ 720 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~ 720 (2191)
..+.++++||||+++ .+.+.++++
T Consensus 154 -----------------~~~~~~l~~SATp~~~~~~~~~~~~ 178 (200)
T d1wp9a1 154 -----------------AKNPLVIGLTASPGSTPEKIMEVIN 178 (200)
T ss_dssp -----------------CSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred -----------------CCCCcEEEEEecCCCcHHHHHHHHh
Confidence 245689999999764 555555544
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=9.6e-18 Score=188.52 Aligned_cols=122 Identities=30% Similarity=0.427 Sum_probs=109.4
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+|++.|+.++..|... ...+..+||+|+.++
T Consensus 29 ~~~~~IIF~~t~~~~~~l~~~l~~~----------------------------------------~~~~~~~h~~~~~~~ 68 (200)
T d1oywa3 29 RGKSGIIYCNSRAKVEDTAARLQSK----------------------------------------GISAAAYHAGLENNV 68 (200)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCCEEEEEeeehhhHHhhhhhccC----------------------------------------CceeEEecCCCcHHH
Confidence 4578999999999999998777541 123888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|||+|++++||++..+. +..+|+||+|||||.| ..|.|++|+.+.+...+
T Consensus 69 r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~----~~~~y~qr~GR~gR~g--~~g~ai~~~~~~d~~~l 142 (200)
T d1oywa3 69 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR----NIESYYQETGRAGRDG--LPAEAMLFYDPADMAWL 142 (200)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS----SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHhcccceEEEecchhhhccCCCCCCEEEECCCcc----chHHHHHHhhhhhcCC--CCceEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988876 8999999999999999 79999999999998888
Q ss_pred HhhhccCC
Q 000107 938 MGLLNESC 945 (2191)
Q Consensus 938 ~~ll~~~l 945 (2191)
.+++.+..
T Consensus 143 ~~~i~~~~ 150 (200)
T d1oywa3 143 RRCLEEKP 150 (200)
T ss_dssp HHHHHTSC
T ss_pred Hhhhhccc
Confidence 88776554
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.6e-17 Score=180.74 Aligned_cols=127 Identities=23% Similarity=0.365 Sum_probs=103.6
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
...++||||+|+..|+.++..|... ...+..+||+++..+
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~----------------------------------------~~~~~~~~~~~~~~~ 65 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRND----------------------------------------KFTVSAIYSDLPQQE 65 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhc----------------------------------------CceEEEeccCCchhh
Confidence 3579999999999999998877542 123888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH-
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK- 936 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~- 936 (2191)
|..+++.|+.|.++|||||+++++|+|+|++.+||+++.|. +...|+||+||+||.| ..|.|+.++++.+...
T Consensus 66 r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~----~~~~yihR~GR~gR~g--~~g~~i~~~~~~d~~~~ 139 (162)
T d1fuka_ 66 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA----NKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 139 (162)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCS----SGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHHHHhhcccceeeccccccccccCCCceEEEEeccch----hHHHHHhhccccccCC--CccEEEEEcCHHHHHHH
Confidence 99999999999999999999999999999999999988876 8899999999999999 7899999999877554
Q ss_pred --HHhhhccCCCCccc
Q 000107 937 --IMGLLNESCPPLHS 950 (2191)
Q Consensus 937 --~~~ll~~~l~~l~S 950 (2191)
+.+++...++.+..
T Consensus 140 ~~i~~~~~~~~~~ip~ 155 (162)
T d1fuka_ 140 RELEKFYSTQIEELPS 155 (162)
T ss_dssp HHHHHHSSCCCEECCS
T ss_pred HHHHHHHcCcCCCCCh
Confidence 34455555554443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=1.5e-17 Score=179.88 Aligned_cols=124 Identities=21% Similarity=0.359 Sum_probs=106.1
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+|++.|+.++..|.+. ...+..+|++++..+
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~~----------------------------------------g~~~~~~~~~~~~~~ 66 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRDI----------------------------------------GFKAGAIHGDLSQSQ 66 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECSSSCHHH
T ss_pred CCCCEEEEECchHHHHHHHhhhccc----------------------------------------ccccccccccchhhh
Confidence 4578999999999999988887541 123888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|+.|..+|||||+++++|||+|.+++||+++.+. +..+|+||+||+||.| ..|.+|+++++.+...+
T Consensus 67 r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~----~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~~~ 140 (155)
T d1hv8a2 67 REKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ----NPESYMHRIGRTGRAG--KKGKAISIINRREYKKL 140 (155)
T ss_dssp HHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS----CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHH
T ss_pred hhhhhhhhhcccceeeeehhHHhhhhhhccCcEEEEecCCC----CHHHHHHHHHhcCcCC--CCceEEEEEchHHHHHH
Confidence 99999999999999999999999999999999999988776 8999999999999999 78999999998765443
Q ss_pred ---HhhhccCCCC
Q 000107 938 ---MGLLNESCPP 947 (2191)
Q Consensus 938 ---~~ll~~~l~~ 947 (2191)
.+.++-.++.
T Consensus 141 ~~i~~~~~~~i~~ 153 (155)
T d1hv8a2 141 RYIERAMKLKIKK 153 (155)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHCCCccc
Confidence 3455555544
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.9e-17 Score=181.97 Aligned_cols=130 Identities=22% Similarity=0.360 Sum_probs=111.3
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
++.++||||++++.|+.++..|... ++.+.++||+|+..+
T Consensus 31 ~~~k~iVF~~~~~~~~~l~~~L~~~----------------------------------------g~~~~~~h~~~~~~~ 70 (171)
T d1s2ma2 31 QINQAIIFCNSTNRVELLAKKITDL----------------------------------------GYSCYYSHARMKQQE 70 (171)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCceEEEEeeeehhhHhHHhhhcc----------------------------------------cccccccccccchhh
Confidence 4579999999999999998887542 233888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..++..|+.|.++|||||+++++|+|+|.+.+||+++.+. +..+|+||+||+||.| ..|.||.|+++.+...+
T Consensus 71 r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~----~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~~~ 144 (171)
T d1s2ma2 71 RNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK----TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNL 144 (171)
T ss_dssp HHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS----SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHH
T ss_pred hhhhhhhcccCccccccchhHhhhccccceeEEEEecCCcc----hHHHHHHHhhhcccCC--CccEEEEEeCHHHHHHH
Confidence 99999999999999999999999999999999999988876 8899999999999998 78999999998775544
Q ss_pred ---HhhhccCCCCcccccc
Q 000107 938 ---MGLLNESCPPLHSCLS 953 (2191)
Q Consensus 938 ---~~ll~~~l~~l~S~L~ 953 (2191)
.+.+...++++...+.
T Consensus 145 ~~i~~~l~~~~~~~p~~~d 163 (171)
T d1s2ma2 145 YKIEQELGTEIAAIPATID 163 (171)
T ss_dssp HHHHHHHTCCCEECCSSCC
T ss_pred HHHHHHHCCCCCCCCcccc
Confidence 4456666666655554
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.7e-17 Score=180.04 Aligned_cols=125 Identities=24% Similarity=0.436 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.+..++... .+.++||||++++.|+.++..|... +..
T Consensus 23 ~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~----------------------------------------~~~ 60 (168)
T d2j0sa2 23 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREA----------------------------------------NFT 60 (168)
T ss_dssp HHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCC
T ss_pred HHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhc----------------------------------------ccc
Confidence 3445555443 4579999999999999988777541 123
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEE
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
+.++||+++..+|..+++.|++|.++|||||+++++|+|+|.+++||+++.|. +..+|+||+||+||.| ..|.+
T Consensus 61 ~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~----~~~~yihR~GR~gR~g--~~G~~ 134 (168)
T d2j0sa2 61 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN----NRELYIHRIGRSGRYG--RKGVA 134 (168)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS----SHHHHHHHHTTSSGGG--CCEEE
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCccEEeccchhcccccccCcceEEEecCCc----CHHHHHhhhccccccC--CCcEE
Confidence 78899999999999999999999999999999999999999999999988876 8899999999999999 78999
Q ss_pred EEEeChhhHHHHH
Q 000107 926 MLICKPEEVKKIM 938 (2191)
Q Consensus 926 ill~~~~e~~~~~ 938 (2191)
|+++.+.+...+.
T Consensus 135 i~~~~~~d~~~~~ 147 (168)
T d2j0sa2 135 INFVKNDDIRILR 147 (168)
T ss_dssp EEEEEGGGHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 9999998765444
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=4.9e-17 Score=176.97 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
+++.+.+....+.++||||+|++.|+.++..|.+. + ..+.
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~----G------------------------------------i~a~ 59 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----G------------------------------------IRAR 59 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----T------------------------------------CCEE
T ss_pred HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhc----C------------------------------------CceE
Confidence 44555666667899999999999999999888652 1 2288
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCC-cccCcccccccccccCCCCCCCceEEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~-~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||++..+.. .+.+...|+||+|||||.| .|.++
T Consensus 60 ~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~---~g~~~ 136 (174)
T d1c4oa2 60 YLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---RGEVW 136 (174)
T ss_dssp EECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEE
T ss_pred EEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcC---CCeeE
Confidence 9999999999999999999999999999999999999999999998765432 2346678999999999988 68888
Q ss_pred EEeCh
Q 000107 927 LICKP 931 (2191)
Q Consensus 927 ll~~~ 931 (2191)
+++..
T Consensus 137 ~~~~~ 141 (174)
T d1c4oa2 137 LYADR 141 (174)
T ss_dssp EECSS
T ss_pred EeecC
Confidence 88765
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.67 E-value=1.3e-16 Score=175.92 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
++..+.+....+.++||||+++..++.++..|.+. +..+.
T Consensus 20 ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~----------------------------------------g~~~~ 59 (181)
T d1t5la2 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEA----------------------------------------GIKVA 59 (181)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTT----------------------------------------TCCEE
T ss_pred HHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhC----------------------------------------Cccee
Confidence 44445555667889999999999999988877431 22389
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCC-cccCcccccccccccCCCCCCCceEEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~-~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
++||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+++.+.. ...+...|+||+|||||.| .|.++
T Consensus 60 ~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g---~~~~~ 136 (181)
T d1t5la2 60 YLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---NGHVI 136 (181)
T ss_dssp EECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEE
T ss_pred EecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhcccc---CceeE
Confidence 9999999999999999999999999999999999999999999999877642 2346788999999999998 56666
Q ss_pred EEeCh
Q 000107 927 LICKP 931 (2191)
Q Consensus 927 ll~~~ 931 (2191)
+++..
T Consensus 137 ~~~~~ 141 (181)
T d1t5la2 137 MYADT 141 (181)
T ss_dssp EECSS
T ss_pred eecch
Confidence 66544
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-16 Score=174.81 Aligned_cols=110 Identities=26% Similarity=0.338 Sum_probs=97.9
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
...++||||++++.++.++..|.+. ...+.++||+|+.++
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~ihg~~~~~~ 65 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVEQ----------------------------------------NFPAIAIHRGMPQEE 65 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCeEEEEEeeeecchhhhhhhccc----------------------------------------cccccccccccchhh
Confidence 3568999999999999888777541 223889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|..+++.|++|.++|||||+++++|+|+|.+.+||+++.+. +...|+||+||+||.| ..|.||+++++.+
T Consensus 66 r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~----~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 66 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE----DSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCS----SHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred hhhhhhhhccccceeeeccccccchhhcccchhhhhhhccc----chhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 99999999999999999999999999999999999887765 8899999999999998 7899999998754
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.54 E-value=1.6e-14 Score=151.00 Aligned_cols=137 Identities=18% Similarity=0.116 Sum_probs=96.7
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCC
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT 617 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~ 617 (2191)
+.+|+++++++|||+|||+++..++++.....+.++++++|+++++.|.++.+.. .+..+. .... ......+.
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~~~----~~~~~~--~~~~-~~~~~~~~ 76 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG----LDVKFH--TQAF-SAHGSGRE 76 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT----SCEEEE--SSCC-CCCCCSSC
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHhhh----hhhhhc--cccc-cccccccc
Confidence 5579999999999999999998888888888899999999999999998866532 232222 2211 11223345
Q ss_pred ceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q 000107 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPA 697 (2191)
Q Consensus 618 ~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~ 697 (2191)
.+.++|...+ .+.......+.++++||+||+|.+..... ....++..+.. .
T Consensus 77 ~~~~~~~~~l---~~~~~~~~~~~~~~lvIiDEaH~~~~~~~--~~~~~~~~~~~------------------------~ 127 (140)
T d1yksa1 77 VIDAMCHATL---TYRMLEPTRVVNWEVIIMDEAHFLDPASI--AARGWAAHRAR------------------------A 127 (140)
T ss_dssp CEEEEEHHHH---HHHHTSSSCCCCCSEEEETTTTCCSHHHH--HHHHHHHHHHH------------------------T
T ss_pred chhhhhHHHH---HHHHhccccccceeEEEEccccccChhhH--HHHHHHHHHhh------------------------C
Confidence 6788887664 34445667889999999999999854322 22333333322 2
Q ss_pred CCceEEEEeccCC
Q 000107 698 HGLQIVGMSATMP 710 (2191)
Q Consensus 698 ~~iqII~mSATL~ 710 (2191)
.+.++|+||||+|
T Consensus 128 ~~~~~l~lTATPp 140 (140)
T d1yksa1 128 NESATILMTATPP 140 (140)
T ss_dssp TSCEEEEECSSCT
T ss_pred CCCCEEEEEcCCC
Confidence 4679999999975
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.53 E-value=4.6e-15 Score=175.38 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=95.1
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
+|+++|.+++.. ++.+++.++.+|||+|||+++...+.......+.++|||+|+++|+.|.++++.+++......+..
T Consensus 113 ~~rdyQ~~av~~--~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~ 190 (282)
T d1rifa_ 113 EPHWYQKDAVFE--GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHH--HHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred ccchHHHHHHHH--HHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccccee
Confidence 699999999987 778889999999999999998765544444456799999999999999999998876543444555
Q ss_pred EeccCCC-CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 604 YYGNQGG-GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 604 ~~G~~~~-~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+++... ........|+|+|+..+..+ ...+++++++||+||+|++.
T Consensus 191 ~~~g~~~~~~~~~~~~i~i~t~qs~~~~-----~~~~~~~f~~VIvDEaH~~~ 238 (282)
T d1rifa_ 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTS-----CGGGGGGEEEEEEETGGGCC
T ss_pred ecceecccccccccceEEEEeeehhhhh-----cccccCCCCEEEEECCCCCC
Confidence 5554332 22334578999998775432 23357789999999999964
|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of prokaryotic DNA polymerase species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.8e-14 Score=156.27 Aligned_cols=183 Identities=16% Similarity=0.219 Sum_probs=133.5
Q ss_pred CceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCC
Q 000107 1488 PINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGS 1567 (2191)
Q Consensus 1488 ~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~ 1567 (2191)
...+|.+...+.++++.+...+.++||+|+++. .+....++|+++|+.++..+|+++.+......
T Consensus 6 ~y~~I~t~~~l~~~l~~l~~~~~~a~DtEt~~l----~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~~~----------- 70 (195)
T d1kfsa1 6 NYVTILDEETLKAWIAKLEKAPVFAFDTETDSL----DNISANLVGLSFAIEPGVAAYIPVAHDYLDAP----------- 70 (195)
T ss_dssp TSEECCSHHHHHHHHHHHHHSSSEEEEEEESCS----CTTTCCEEEEEEEEETTEEEEEECCCCSTTCC-----------
T ss_pred cceEECCHHHHHHHHHHHhcCCeEEEEeeeCCC----CccccccccceeeccCCccccccccccccccc-----------
Confidence 456788999999999999999999999998743 12234699999999999999999865431110
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccC
Q 000107 1568 SDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPV 1647 (2191)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1647 (2191)
..++. ...++.++++|+++.+.|++||+++|+.+|.++|+.+.+.
T Consensus 71 ---~~~~~-------~~~l~~l~~~le~~~i~ki~hn~~~d~~~l~~~~~~~~~~------------------------- 115 (195)
T d1kfsa1 71 ---DQISR-------ERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGI------------------------- 115 (195)
T ss_dssp ---CCCCH-------HHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCE-------------------------
T ss_pred ---ccccH-------HHHHHHHHHHHhcccceeeechHHHHHHHHHHHhccccCc-------------------------
Confidence 01111 3446789999999999999999999999999998876642
Q ss_pred CCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHH---HHhhc--cCchhhhh-HHHHhhhHHHHHHHHHHHHHH
Q 000107 1648 HLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAA---AAANR--SGRWKNQM-RRAAHNGCCRRVAQTRALCSV 1721 (2191)
Q Consensus 1648 ~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~---~~~~~--~g~~~~~~-~~~~~~ya~~Da~~t~~L~~~ 1721 (2191)
++|||+|+||++|....+++.. .+.++++.+.. ...+. ...+-.++ .+.+..|||.||.+|++||..
T Consensus 116 ----~~Dt~~a~~l~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~YAa~D~~~t~~L~~~ 188 (195)
T d1kfsa1 116 ----AFDTMLESYILNSVAGRHDMDS---LAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188 (195)
T ss_dssp ----EEEHHHHHHHHCTTSSCCSHHH---HHHHHSSCCCCCHHHHHCSGGGCCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHhcccccccchHH---HHHHHhhcccchHhhhcccccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999877776444 45555544321 11111 11111111 144678999999999999999
Q ss_pred HHHHHH
Q 000107 1722 LWKLLV 1727 (2191)
Q Consensus 1722 L~~~L~ 1727 (2191)
|.++|+
T Consensus 189 l~~~L~ 194 (195)
T d1kfsa1 189 MWPDLQ 194 (195)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 998885
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.48 E-value=1.2e-14 Score=153.10 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=83.6
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+|++.|+.++..|.+. ...+..+|++|+.+
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~----------------------------------------G~~~~~~H~~~~~~- 72 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVAL----------------------------------------GINAVAYYRGLDVS- 72 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHH----------------------------------------TCEEEEECTTCCSC-
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhcc----------------------------------------ccchhhhhccchhh-
Confidence 4679999999999999999888542 12377899999864
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.|++|..+|||||+++++||| |+++.||+......-+-+..+|+||+||||| | ..|. ++++.+.|
T Consensus 73 ------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 73 ------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp ------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred ------hhhhhhcceeehhHHHHhccc-cccceEEEEEecCCCCCCHHHHHhHhccccC-C--CCcE-EEEEcCCC
Confidence 478999999999999999999 9999998865322223388899999999999 7 6895 66766543
|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of prokaryotic DNA polymerase species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=99.46 E-value=4.6e-14 Score=154.44 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=109.9
Q ss_pred CCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHH
Q 000107 1508 THEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWK 1587 (2191)
Q Consensus 1508 ~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1587 (2191)
...++||+|+.+. .....+|+|++||+++ ..||++..+.. ..+
T Consensus 16 ~~~~a~~~E~~~~----n~~~~~iiGi~i~~~~-~~~~i~~~~~~--------------------------------~~~ 58 (171)
T d2hhva1 16 ADKAALVVEVVEE----NYHDAPIVGIAVVNEH-GRFFLRPETAL--------------------------------ADP 58 (171)
T ss_dssp CSEEEEEEECCSS----SCTTCCCCEEEEEETT-EEEEECHHHHT--------------------------------TCH
T ss_pred cCCeEEEEEcCCC----ccccCeEEEEEEEECC-CEEEEechhhh--------------------------------hHH
Confidence 3568999988632 1223479999999765 47888753110 013
Q ss_pred HHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCC
Q 000107 1588 RIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDE 1667 (2191)
Q Consensus 1588 ~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~ 1667 (2191)
.|+++|+++.+.|++||+|+|+++|+++|+.+++. .||||||+||++|...
T Consensus 59 ~l~~~l~~~~~~ki~hn~K~d~~~L~~~gi~~~~~-----------------------------~fDt~laayll~p~~~ 109 (171)
T d2hhva1 59 QFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGV-----------------------------SFDLLLAAYLLDPAQG 109 (171)
T ss_dssp HHHHHHHCTTSEEEESSHHHHHHHHHTTTCCCCCE-----------------------------EEEHHHHHHHHCGGGC
T ss_pred HHHHHHhCccceeeccchHHHHHHHHHCCCCCccc-----------------------------cccHHHHHHHhcCCcc
Confidence 57889999999999999999999999999987753 5899999999999877
Q ss_pred CCCchhHHHHHHHhhChH---HHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1668 RSSNPNLEKEVKKRLSSE---AAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1668 ~~~l~~L~~~~~~~l~~e---~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
.++++. ++.++++.+ .....+++.+......+...+|||.||.++++|+..|.++|++
T Consensus 110 ~~~L~~---la~~yl~~~~~~~e~~~gkg~k~~~~~~~~~~~yaa~da~~~~~L~~~l~~~L~e 170 (171)
T d2hhva1 110 VDDVAA---AAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 170 (171)
T ss_dssp CCSHHH---HHHTTTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHH---HHHHHcCCCCccceeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776544 456665433 2233332222222233556789999999999999999999874
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=9.5e-14 Score=156.67 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
+|++||.+++.. ++.+++.++++|||+|||+++...+ .. .++++|||+|+++|+.|..+.+..+... .+..
T Consensus 70 ~Lr~yQ~eav~~--~~~~~~~ll~~~tG~GKT~~a~~~~-~~---~~~~~Liv~p~~~L~~q~~~~~~~~~~~---~~~~ 140 (206)
T d2fz4a1 70 SLRDYQEKALER--WLVDKRGCIVLPTGSGKTHVAMAAI-NE---LSTPTLIVVPTLALAEQWKERLGIFGEE---YVGE 140 (206)
T ss_dssp CCCHHHHHHHHH--HTTTSEEEEEESSSTTHHHHHHHHH-HH---SCSCEEEEESSHHHHHHHHHHHGGGCGG---GEEE
T ss_pred CcCHHHHHHHHH--HHhCCCcEEEeCCCCCceehHHhHH-HH---hcCceeEEEcccchHHHHHHHHHhhccc---chhh
Confidence 699999999986 7888899999999999999876544 32 4678999999999999999888765332 2444
Q ss_pred EeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 604 YYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 604 ~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+.|.. .....|+|+|++.+...... ..+++++||+||+|.+..
T Consensus 141 ~~~~~-----~~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a 183 (206)
T d2fz4a1 141 FSGRI-----KELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPA 183 (206)
T ss_dssp ESSSC-----BCCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCT
T ss_pred ccccc-----ccccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCc
Confidence 44432 23457999999987655443 245789999999999864
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=6.7e-13 Score=150.97 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=121.6
Q ss_pred HHHHHHHH-HcCCCCCCHHHHHhhhhcccc----c--CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHH
Q 000107 511 SEICSIYK-KRGISKLYPWQVECLHVDGVL----Q--RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583 (2191)
Q Consensus 511 ~~l~~~l~-~~Gi~~l~p~Q~eal~~~~il----~--gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA 583 (2191)
.+..+.+. ...| .+++-|.+++.. +. . ..+.+++|.||||||.+|..++...+ ..|+++++++|+..|+
T Consensus 42 ~~~~~~~~~~lP~-~lt~~Q~~~~~~--i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La 117 (233)
T d2eyqa3 42 REQYQLFCDSFPF-ETTPDQAQAINA--VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLA 117 (233)
T ss_dssp HHHHHHHHHTCCS-CCCHHHHHHHHH--HHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHH
T ss_pred HHHHHhhhhcccc-ccchhHHHHHHH--HHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH-HcCCceEEEccHHHhH
Confidence 33344443 3444 799999998864 33 2 35899999999999999998887655 5799999999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|.++.|++++..++..|..++|...... .....+|+|+|--. +. ....+.++++|||||-|..+
T Consensus 118 ~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~----l~---~~~~f~~LgLiIiDEeH~fg 190 (233)
T d2eyqa3 118 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL----LQ---SDVKFKDLGLLIVDEEHRFG 190 (233)
T ss_dssp HHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH----HH---SCCCCSSEEEEEEESGGGSC
T ss_pred HHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhh----hc---cCCccccccceeeechhhhh
Confidence 99999999999999999999988765321 23467999999643 22 34467899999999999854
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHH
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVAD 717 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~ 717 (2191)
- .-+..+ +.. ..++.++.|||| |-++.++.
T Consensus 191 ~-----kQ~~~l---~~~-----------------------~~~~~~l~~SAT-Piprtl~~ 220 (233)
T d2eyqa3 191 V-----RHKERI---KAM-----------------------RANVDILTLTAT-PIPRTLNM 220 (233)
T ss_dssp H-----HHHHHH---HHH-----------------------HTTSEEEEEESS-CCCHHHHH
T ss_pred h-----HHHHHH---Hhh-----------------------CCCCCEEEEecc-hhHHHHHH
Confidence 3 333222 222 145789999999 44455443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=5.5e-13 Score=154.40 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=106.6
Q ss_pred HHHHHHHcCCCCCCHHHHHhhhhcccc------cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHH
Q 000107 513 ICSIYKKRGISKLYPWQVECLHVDGVL------QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 513 l~~~l~~~Gi~~l~p~Q~eal~~~~il------~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~ 586 (2191)
+...++...| +||+-|.+|+.. +. ...+-+++|.||||||.+|..+++..+. .|.++++++||..||.|.
T Consensus 73 ~~~f~~~LPF-eLT~~Q~~ai~e--i~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~-~g~q~~~m~Pt~~La~Qh 148 (264)
T d1gm5a3 73 AEEFIKSLPF-KLTNAQKRAHQE--IRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-AGFQTAFMVPTSILAIQH 148 (264)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHH--HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-HTSCEEEECSCHHHHHHH
T ss_pred HHHHHhhccc-cCCchHHHHHHH--HHHHhhccCcceeeeeccccccccHHHHHHHHHHHh-cccceeEEeehHhhhHHH
Confidence 4445566777 799999999975 43 2357899999999999999998876654 689999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
++.+.+++..+|+.|..++|+..... ..++.+|+|+|-.- +. ....+.++++|||||-|..+-.+
T Consensus 149 ~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl----~~---~~~~f~~LglviiDEqH~fgv~Q 221 (264)
T d1gm5a3 149 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL----IQ---EDVHFKNLGLVIIDEQHRFGVKQ 221 (264)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH----HH---HCCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHH----hc---CCCCccccceeeeccccccchhh
Confidence 99999999999999999988765321 23468999999743 33 34467899999999999976544
Q ss_pred h
Q 000107 659 R 659 (2191)
Q Consensus 659 R 659 (2191)
|
T Consensus 222 r 222 (264)
T d1gm5a3 222 R 222 (264)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.41 E-value=5e-13 Score=140.33 Aligned_cols=129 Identities=17% Similarity=0.090 Sum_probs=89.0
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
+.+..++.+|||+|||+++...+ ...+.+++|++|+++|++|..+.+.+.+.. .....+++. .......+
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~----~~~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~ 76 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY----AAQGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVR---TITTGSPI 76 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH----HTTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSC---EECCCCSE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH----HHcCCcEEEEcChHHHHHHHHHHHHHHhhc---ccccccccc---ccccccce
Confidence 46889999999999998765444 346889999999999999999998876543 222233322 12234579
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 699 (2191)
.++|.+.... . ...+++++++|||||+|++... ....+..++..++ ..+.
T Consensus 77 ~~~~~~~~~~---~--~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~------------------------~~~~ 126 (136)
T d1a1va1 77 TYSTYGKFLA---D--GGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAE------------------------TAGA 126 (136)
T ss_dssp EEEEHHHHHH---T--TGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTT------------------------TTTC
T ss_pred EEEeeeeecc---c--cchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHH------------------------HCCC
Confidence 9999887432 2 3447889999999999996432 2222333332221 1356
Q ss_pred ceEEEEecc
Q 000107 700 LQIVGMSAT 708 (2191)
Q Consensus 700 iqII~mSAT 708 (2191)
+++|+||||
T Consensus 127 ~~~l~~TAT 135 (136)
T d1a1va1 127 RLVVLATAT 135 (136)
T ss_dssp SEEEEEESS
T ss_pred CcEEEEeCC
Confidence 799999999
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.4e-12 Score=144.54 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 767 HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 767 ~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
.+...+...+..|+++.+.||..+..+.++..+.+.++. ..|
T Consensus 19 ~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~--------------------------------------~~i 60 (211)
T d2eyqa5 19 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE--------------------------------------ARI 60 (211)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTT--------------------------------------SCE
T ss_pred HHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCc--------------------------------------eEE
Confidence 345556666778999999999999999888887765532 138
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEE
Q 000107 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
+.+||.|+.++++.++..|++|+++|||||++.+.|||+|+.++||- ...+.+..+++.|..||+||.+ ..|.||
T Consensus 61 ~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI---~~a~rfGLaQLhQLRGRVGR~~--~~s~c~ 135 (211)
T d2eyqa5 61 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---ERADHFGLAQLHQLRGRVGRSH--HQAYAW 135 (211)
T ss_dssp EECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE---TTTTSSCHHHHHHHHTTCCBTT--BCEEEE
T ss_pred EEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE---ecchhccccccccccceeeecC--ccceEE
Confidence 89999999999999999999999999999999999999999987652 2223345778999999999998 789999
Q ss_pred EEeCh
Q 000107 927 LICKP 931 (2191)
Q Consensus 927 ll~~~ 931 (2191)
+++.+
T Consensus 136 l~~~~ 140 (211)
T d2eyqa5 136 LLTPH 140 (211)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99865
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.33 E-value=4.1e-13 Score=158.93 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcC
Q 000107 766 DHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLP 843 (2191)
Q Consensus 766 d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~ 843 (2191)
+.+.+++.+.+. .+.++||||+++..|+.++..|.+.. ... ....+
T Consensus 146 ~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~----~~~----------------------------~~~~g 193 (286)
T d1wp9a2 146 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG----IKA----------------------------KRFVG 193 (286)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT----CCE----------------------------EEECC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcC----Cce----------------------------EEeec
Confidence 455566665543 45799999999999999888875421 110 00011
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
......|++++..+|..+++.|++|.++|||||+++++|||+|++++||+++.+. +...|+||+||+||.+ .|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~----~~~~~~Qr~GR~gR~~---~~ 266 (286)
T d1wp9a2 194 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP----SAIRSIQRRGRTGRHM---PG 266 (286)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH----HHHHHHHHHTTSCSCC---CS
T ss_pred cccccccchhchHHHHHHHHHHHcCCCcEEEEccceeccccCCCCCEEEEeCCCC----CHHHHHHHHHhCCCCC---CC
Confidence 1233457889999999999999999999999999999999999999999887764 7889999999999987 78
Q ss_pred EEEEEeChh
Q 000107 924 ESMLICKPE 932 (2191)
Q Consensus 924 e~ill~~~~ 932 (2191)
.+++|+.+.
T Consensus 267 ~~~~l~~~~ 275 (286)
T d1wp9a2 267 RVIILMAKG 275 (286)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEeCC
Confidence 888888764
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=1.9e-13 Score=152.97 Aligned_cols=133 Identities=18% Similarity=0.316 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhc-C
Q 000107 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETL-P 843 (2191)
Q Consensus 765 ~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l-~ 843 (2191)
.+.+.+.+.+.+..++++.|.||.....+.+...-.. +..+.+.+ ..+ .
T Consensus 15 ~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~--------------------e~~~~l~~----------~~~p~ 64 (206)
T d1gm5a4 15 VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAV--------------------EMYEYLSK----------EVFPE 64 (206)
T ss_dssp HHHHHHHHHHHTTTSCCBCCBCCCC--------CHHH--------------------HHHHSGGG----------SCC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhH--------------------HHHHHHHH----------hcCCC
Confidence 4567777888888899999999988766543211111 00111110 000 1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
+.|+.+||.|++++|+.++..|++|+++|||||+++++|||+|++++||.... +....++|.|..||+||.| ..|
T Consensus 65 ~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii~~a---~~fglsqlhQlrGRvGR~~--~~~ 139 (206)
T d1gm5a4 65 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP---ERFGLAQLHQLRGRVGRGG--QEA 139 (206)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC---SSSCTTHHHHHHHTSCCSS--TTC
T ss_pred CeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEEEcc---CCccHHHHHhhhhheeecc--ccc
Confidence 23778999999999999999999999999999999999999999997654322 2235678889999999999 799
Q ss_pred EEEEEeChh
Q 000107 924 ESMLICKPE 932 (2191)
Q Consensus 924 e~ill~~~~ 932 (2191)
.||+++++.
T Consensus 140 ~~~l~~~~~ 148 (206)
T d1gm5a4 140 YCFLVVGDV 148 (206)
T ss_dssp EEECCCCSC
T ss_pred eeEeeeccc
Confidence 999998763
|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Ribonuclease D, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.5e-11 Score=136.83 Aligned_cols=179 Identities=10% Similarity=0.063 Sum_probs=128.3
Q ss_pred ceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCC
Q 000107 1489 INAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSS 1568 (2191)
Q Consensus 1489 i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~ 1568 (2191)
..+|++...+..+++.+...+.++||+|+.+.. ...-.+.++.+|+++. .|++..-... .
T Consensus 3 y~~I~t~~~l~~~~~~l~~~~~i~~DtE~~~~~----~~~~~l~liQi~~~~~-~~~id~~~~~---~------------ 62 (193)
T d1yt3a3 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTR----TYYPQLGLIQLFDGEH-LALIDPLGIT---D------------ 62 (193)
T ss_dssp CEEECSHHHHHHHHHHHTTSSEEEEEEEEECCS----CSSCEEEEEEEECSSC-EEEECGGGCS---C------------
T ss_pred EEEECCHHHHHHHHHHHhcCCeEEEECcccCCC----cCCCcEEEEEEecCCc-ceeehhcchh---h------------
Confidence 357888999999999999999999999986431 1122578889997654 5665542110 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccC
Q 000107 1569 DKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPV 1647 (2191)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1647 (2191)
+..++++|+++.+.||+||+++|+.+|.+ +|+.+.
T Consensus 63 -----------------~~~l~~ll~~~~i~Kv~hn~~~D~~~L~~~~g~~~~--------------------------- 98 (193)
T d1yt3a3 63 -----------------WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQ--------------------------- 98 (193)
T ss_dssp -----------------CHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCS---------------------------
T ss_pred -----------------hHHHHHHhcCCCceEEEecchhhhhhhhhhcCcccc---------------------------
Confidence 12457899999999999999999998765 455433
Q ss_pred CCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1648 HLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1648 ~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.++||++|+++++.. ..++ |..++.++++.+..+.. +.+.|. .++.+.+..||+.||.+++.||..|..++
T Consensus 99 ---~~~Dt~~~~~~l~~~-~~~~---L~~l~~~~lg~~ldK~~-q~sdW~~rPL~~~qi~YAA~Dv~~ll~L~~~L~~~l 170 (193)
T d1yt3a3 99 ---PLIDTQILAAFCGRP-MSWG---FASMVEEYSGVTLDKSE-SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (193)
T ss_dssp ---SEEEHHHHHHHTTCC-TTCC---HHHHHHHHHCCCCCCTT-TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ---ccchhhHHHhhhccc-cccc---hhhHHhhhccccccchh-hccccccccccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 258999999999864 3454 66667777776543222 344564 46667788899999999999999999999
Q ss_pred HHHHHH-HHHHhhh
Q 000107 1727 VSEELI-EALLNIE 1739 (2191)
Q Consensus 1727 ~~~~L~-~l~~~iE 1739 (2191)
.+.+.. ..+.++|
T Consensus 171 ~~~~~l~~~~~e~~ 184 (193)
T d1yt3a3 171 EASGWLPAALDECR 184 (193)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhCCcHHHHHHHHH
Confidence 876633 3444433
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.17 E-value=4e-12 Score=146.58 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=85.1
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+|++.|+.++..|.+. +..+..+|++|+++.
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~----------------------------------------Gi~a~~~Hgglsq~~ 74 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVAL----------------------------------------GINAVAYYRGLDVSV 74 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCGGG
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHC----------------------------------------CCCEEEEeCCchHHH
Confidence 3679999999999999999888542 122777999999988
Q ss_pred H----------HHHHHHhhcCCceEEEecccccc---cCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceE
Q 000107 858 R----------EVVETCYRKGLVRVLTATSTLAA---GVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGE 924 (2191)
Q Consensus 858 R----------~~Ve~~Fr~G~ikVLVATstLa~---GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge 924 (2191)
| ..+++.|+.|.++++|+|+++++ |+|++.+.+||+++.+. +..+|+||+||+|| | ..|.
T Consensus 75 R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~~d~P~----SvesyIQRiGRTGR-G--r~G~ 147 (299)
T d1a1va2 75 IPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQ----DAVSRTQRRGRTGR-G--KPGI 147 (299)
T ss_dssp SCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEEC----BHHHHHHHHTTBCS-S--SCEE
T ss_pred HHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEeCCCCC----CHHHHHhhccccCC-C--CCce
Confidence 6 45778899999999999999998 67888888898766554 89999999999999 7 6887
Q ss_pred EEEEeC
Q 000107 925 SMLICK 930 (2191)
Q Consensus 925 ~ill~~ 930 (2191)
..++..
T Consensus 148 ~~~l~~ 153 (299)
T d1a1va2 148 YRFVAP 153 (299)
T ss_dssp EEESCS
T ss_pred EEEEec
Confidence 766543
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.16 E-value=5.8e-13 Score=154.43 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.+..++.. -+.++||||+|++.|+.++..|..
T Consensus 15 ~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~-------------------------------------------- 47 (248)
T d1gkub2 15 STLSSILEK---LGTGGIIYARTGEEAEEIYESLKN-------------------------------------------- 47 (248)
T ss_dssp TTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTT--------------------------------------------
T ss_pred HHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHH--------------------------------------------
Confidence 344445432 367899999999998887765521
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEec----ccccccCCCCC-ceEEeecCCCCCcccCcccccccccccCCCCCC
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTAT----STLAAGVNLPA-RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT----stLa~GVNLPa-v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
.+||+|++.+|..+++.|++|.++||||| +.+++|||+|. +++||+++.| .|.|++||+||.|
T Consensus 48 --~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P--------~~~~r~gR~~R~g-- 115 (248)
T d1gkub2 48 --KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP--------SFRVTIEDIDSLS-- 115 (248)
T ss_dssp --SSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC--------EEEEECSCGGGSC--
T ss_pred --hccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhccCccccccEEEEeCCC--------cchhhhhhhhccC--
Confidence 16999999999999999999999999999 67899999996 9999987765 3999999999999
Q ss_pred CceEEEEEeChhhHHHHHhh
Q 000107 921 TKGESMLICKPEEVKKIMGL 940 (2191)
Q Consensus 921 ~~Ge~ill~~~~e~~~~~~l 940 (2191)
..|.+++++...+...+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l 135 (248)
T d1gkub2 116 PQMVKLLAYLYRNVDEIERL 135 (248)
T ss_dssp HHHHHHHHTTTSCHHHHHTT
T ss_pred cceEeeeeccHhhHHHHHHH
Confidence 67888877777665554443
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.14 E-value=6.1e-12 Score=140.91 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.+.+++.+. .+.++||||++...++.+++.| +
T Consensus 82 ~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l---------------------------------------------~ 114 (200)
T d2fwra1 82 RKLREILERH--RKDKIIIFTRHNELVYRISKVF---------------------------------------------L 114 (200)
T ss_dssp HHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHT---------------------------------------------T
T ss_pred HHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhc---------------------------------------------C
Confidence 4445555442 4579999999998877665433 1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCC-ceE
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDT-KGE 924 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~-~Ge 924 (2191)
+..+||+++.++|..+++.|++|.++|||||++++.|||+|.+++||....+. +...|+||+||++|.|.+. .+.
T Consensus 115 ~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~~~~~~----s~~~~~Q~iGR~~R~~~~k~~~~ 190 (200)
T d2fwra1 115 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG----SAREYIQRLGRILRPSKGKKEAV 190 (200)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS----CCHHHHHHHHHSBCCCTTTCCEE
T ss_pred cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEEEeCCCC----CHHHHHHHHHhcCCCCCCCcEEE
Confidence 33479999999999999999999999999999999999999999887655443 8889999999999998643 345
Q ss_pred EEEEe
Q 000107 925 SMLIC 929 (2191)
Q Consensus 925 ~ill~ 929 (2191)
.|-|+
T Consensus 191 i~~~v 195 (200)
T d2fwra1 191 LYELI 195 (200)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
|
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exosome complex exonuclease RRP6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.1e-10 Score=136.56 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=127.9
Q ss_pred CCCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhcc
Q 000107 1486 KGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIY 1565 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~ 1565 (2191)
..+...|++.+++..+++.++..+.++||+|+.+.. ...-.++++.+|+.+. .|+|+...-.
T Consensus 82 ~t~~~~Vdt~e~L~~li~~L~~~~~iavDtE~~~~~----s~~g~l~LiQiat~~~-~~iiD~~~l~------------- 143 (292)
T d2hbka2 82 DSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYR----SYYGIVCLMQISTRER-DYLVDTLKLR------------- 143 (292)
T ss_dssp GCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSS----SSSCEEEEEEEECSSC-EEEEETTTTT-------------
T ss_pred CCCcEEeCCHHHHHHHHHHHhcCCcEEEEEEeCcCc----ccCCeEEEEEEEeCCc-cEEEEecccc-------------
Confidence 345678999999999999999999999999986321 1112578889997654 6777653210
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhc-CcccccccCcccccccccccccccccccc
Q 000107 1566 GSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA-AVSIQRFGGLNLVGTSLGLENVGSSFLLL 1644 (2191)
Q Consensus 1566 ~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~-gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2191)
..+..|+++|+++.+.||+||+++|+.+|.+. |+.+.
T Consensus 144 ------------------~~l~~L~~ll~d~~I~KV~H~~~~Di~~L~~~~g~~~~------------------------ 181 (292)
T d2hbka2 144 ------------------ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVV------------------------ 181 (292)
T ss_dssp ------------------TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCS------------------------
T ss_pred ------------------cchHHHHHHHhccCeEEEeechHhhhhhhhhccccccc------------------------
Confidence 00134778999999999999999999999764 54332
Q ss_pred ccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1645 SPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1645 ~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.+|||++|+++++. ..++ |+.++.++++.+..+.. +...|. .++...+..||+.||.+++.||..|.
T Consensus 182 ------n~fDT~~aa~~l~~--~~~s---L~~L~~~yl~~~ldK~~-q~SdW~~RPLs~~qi~YAa~Da~~Ll~ly~~L~ 249 (292)
T d2hbka2 182 ------GLFDTYHASKAIGL--PRHS---LAYLLENFANFKTSKKY-QLADWRIRPLSKPMTAAARADTHFLLNIYDQLR 249 (292)
T ss_dssp ------SEEEHHHHHHHHTC--SCCS---HHHHHHHHHCCCCCCTT-TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ------chHHHHHHHHHhCc--cccc---hHHHHHHhhhhcccccc-cccccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999974 3454 66667777776643322 334454 45667788999999999999999999
Q ss_pred HHHHHHH
Q 000107 1724 KLLVSEE 1730 (2191)
Q Consensus 1724 ~~L~~~~ 1730 (2191)
.+|.+.+
T Consensus 250 ~~L~~~~ 256 (292)
T d2hbka2 250 NKLIESN 256 (292)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9987654
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.82 E-value=1.9e-09 Score=126.70 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||++..+++.+|..|.+. .+.|..+||.+..++
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~----------------------------------------g~~V~~l~~~~~~~e 74 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKA----------------------------------------GKSVVVLNRKTFERE 74 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT----------------------------------------TCCEEECCSSSCC--
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----------------------------------------CCeEEEEcCcCcHhH
Confidence 4789999999999999999888542 122788999999888
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC---------------CCcccCcccccccccccCCCCCCCc
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI---------------GRDFIDGTRYRQMAGRAGRTGIDTK 922 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~---------------g~~~is~~~y~QmiGRAGR~G~d~~ 922 (2191)
+. .|++|..+|||||+++++|+|++ +.+|||.... ...+++.++..||.||+||.+ ..
T Consensus 75 ~~----~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~--~~ 147 (299)
T d1yksa2 75 YP----TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP--NR 147 (299)
T ss_dssp ----------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT--TC
T ss_pred Hh----hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC--CC
Confidence 65 46789999999999999999995 8888775421 123578888899999999986 22
Q ss_pred eEEEEEeC
Q 000107 923 GESMLICK 930 (2191)
Q Consensus 923 Ge~ill~~ 930 (2191)
..++.++.
T Consensus 148 ~~~~~~y~ 155 (299)
T d1yksa2 148 DGDSYYYS 155 (299)
T ss_dssp CCEEEEEC
T ss_pred ceEEEEeC
Confidence 33444444
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=98.68 E-value=7.7e-09 Score=92.15 Aligned_cols=56 Identities=32% Similarity=0.396 Sum_probs=52.5
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
|++|||||+.||++||++||.|+++|+.|++++|.++ .+++.+.|++|+++||+++
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i------------~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDI------------EGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTS------------TTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHC------------CCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999987 5788899999999999875
|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Hypothetical protein AT5G06450 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.62 E-value=7.6e-08 Score=107.39 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=107.8
Q ss_pred hCCeEEEEeeccCCcc----cCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHH
Q 000107 1507 ATHEFYFDIHYDKHSE----ANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMI 1582 (2191)
Q Consensus 1507 ~~~~~afD~e~~~~~~----~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1582 (2191)
....++||+|....-. ........+.-+.+|. .+..|++.+.+...
T Consensus 45 ~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t-~~~~~l~~l~~~~~----------------------------- 94 (206)
T d1vk0a_ 45 GNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLST-RNLCLFLRLPKPFH----------------------------- 94 (206)
T ss_dssp STTEEEEEEEEECCC------CGGGGCEEEEEEEEC-SSEEEEEECCSSCC-----------------------------
T ss_pred CCCEEEEEeecCCCCCcccccccccCceeEEEEEEe-CCCEEEEECCcccc-----------------------------
Confidence 4578999999743211 0111234577778885 46688898864210
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccCCCCccchHHHHHHh
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWI 1661 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawL 1661 (2191)
.....|.++|+++.+.||+||+++|+..|++ +|+.+.++ +.++++|+++
T Consensus 95 -~~~~~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~-----------------------------~Dl~~la~~~ 144 (206)
T d1vk0a_ 95 -DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNA-----------------------------INVGKLAAEA 144 (206)
T ss_dssp -GGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSE-----------------------------EEHHHHHHHH
T ss_pred -ccHHHHHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccce-----------------------------EEchHHHHHh
Confidence 0124678899999999999999999999977 68876642 2347899888
Q ss_pred cCC-CCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1662 LWP-DDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1662 L~P-~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
+.. ....++ |..++..+++....+...+.+.|..++......||+.||.+++++|..|.+
T Consensus 145 ~~~~~~~~~g---L~~L~~~~Lg~~l~K~~~~~SnW~~pLs~~Qi~YAA~DA~~~~~i~~~L~~ 205 (206)
T d1vk0a_ 145 RGTLVLEFLG---TRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HTCGGGGGCC---HHHHHHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccccch---HHHHHHHHhcccCCCcceeecCCCCcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 753 333454 556677777766554333346787778888899999999999999998864
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.60 E-value=2.1e-08 Score=89.75 Aligned_cols=57 Identities=35% Similarity=0.338 Sum_probs=53.4
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
.|.+|||||+.||++||++||.|+++|+.|++++|.++ ++++...|.+|+++||+++
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i------------~Gi~~~~A~~i~~~ar~~~ 58 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEV------------AGISEGTALKIIQAARKAA 58 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHH------------HCCCHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHC------------CCCCHHHHHHHHHHHHHHc
Confidence 48899999999999999999999999999999999987 6788999999999999875
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.46 E-value=3.2e-07 Score=105.03 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
+.+.+++.+....|.++||||..+.....+...+...+ +..
T Consensus 72 ~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~---------------------------------------~~~ 112 (244)
T d1z5za1 72 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---------------------------------------NTE 112 (244)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---------------------------------------CSC
T ss_pred HHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhc---------------------------------------cce
Confidence 45667777777788999999999887766555443321 122
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcC-CceEEEe-cccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 846 VAYHHAGLTVEEREVVETCYRKG-LVRVLTA-TSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G-~ikVLVA-TstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
+..+||+++.++|..+.+.|.++ ..+||++ |...+.|+|++....||.+... .++..+.|+.||+-|.|....-
T Consensus 113 ~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~----wn~~~~~Qa~~R~~R~Gq~~~v 188 (244)
T d1z5za1 113 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW----WNPAVEDQATDRVYRIGQTRNV 188 (244)
T ss_dssp CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCC----SCTTTC--------------CC
T ss_pred EEEEecccchhccchhhhhhhccccchhccccccccccccccchhhhhhhcCch----hhhHHHhhhcceeeecCCCCce
Confidence 56789999999999999999876 4666655 4688899999998877754433 4788899999999999987777
Q ss_pred EEEEEeChh
Q 000107 924 ESMLICKPE 932 (2191)
Q Consensus 924 e~ill~~~~ 932 (2191)
.+|.++...
T Consensus 189 ~i~~l~~~~ 197 (244)
T d1z5za1 189 IVHKLISVG 197 (244)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeeCC
Confidence 777665553
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.42 E-value=1.5e-06 Score=102.20 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred CCCCHHHHHhhhhc-------ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-------CCEEEEEchhHHHHHHHHH
Q 000107 523 SKLYPWQVECLHVD-------GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-------GKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~-------~il~gknlIi~APTGSGKTlvael~iL~~ll~~-------g~kaL~I~P~raLA~q~~~ 588 (2191)
..|+|+|.+++... ....+...|++-..|.|||+++.-. +..+... ..++|||+|. +|..+..+
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~-l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITL-IWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHH-HHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH-HHHHHHhcccccCCCCcEEEEccc-hhhHHHHH
Confidence 36999999998641 1124678999999999999876443 3333332 2368999997 57889999
Q ss_pred HHHHHhhccCCeEEEEeccCCC------------CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGG------------GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~------------~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
++.+++... ..+..++|+... .......+++|+|++.+.... ....-.+.++||+||+|.+..
T Consensus 132 Ei~k~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~----~~l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 132 EVGKWLGGR-VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----EVLHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHHGGG-CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----TTTTTSCCCEEEETTGGGCCT
T ss_pred HHHhhcCCc-eeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccch----hcccccceeeeeccccccccc
Confidence 998876542 344445554311 112234679999998754332 222223578999999999975
Q ss_pred c
Q 000107 657 Q 657 (2191)
Q Consensus 657 ~ 657 (2191)
.
T Consensus 207 ~ 207 (298)
T d1z3ix2 207 S 207 (298)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.41 E-value=5e-07 Score=102.40 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=82.2
Q ss_pred CCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+|+|.+++... ....+...|++-++|.|||+++.. ++..+... ..++|+|+| ..+..+..+++.++... .
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~-~~~~~~~~~~~~~~LIv~p-~~l~~~W~~e~~~~~~~--~ 87 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPH--L 87 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTT--S
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHH-hhhhhhhcccccccceecc-hhhhhHHHHHHHhhccc--c
Confidence 6999999999641 012456799999999999999854 44444433 347899998 56777788888776543 3
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
.+..+ +.........+.+|+++|++.+..... + .--..++||+||+|.+...
T Consensus 88 ~~~~~-~~~~~~~~~~~~~vvi~~~~~~~~~~~-l----~~~~~~~vI~DEah~~k~~ 139 (230)
T d1z63a1 88 RFAVF-HEDRSKIKLEDYDIILTTYAVLLRDTR-L----KEVEWKYIVIDEAQNIKNP 139 (230)
T ss_dssp CEEEC-SSSTTSCCGGGSSEEEEEHHHHTTCHH-H----HTCCEEEEEEETGGGGSCT
T ss_pred cceee-ccccchhhccCcCEEEeeHHHHHhHHH-H----hcccceEEEEEhhhccccc
Confidence 44433 222222233457899999988543221 1 1124688999999999764
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.35 E-value=1e-07 Score=91.16 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=69.0
Q ss_pred cccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHH
Q 000107 948 LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPL 1027 (2191)
Q Consensus 948 l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~L 1027 (2191)
+.|+|..+. .+.+.+|.+|++|.+.+.+++.+|+.+||++.+.+. ...+.++++|++|.+.+||+.++ .+.+|++
T Consensus 2 i~S~L~~~~-~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~-~l~~~i~~~l~~L~~~~~I~~~~---~l~aT~l 76 (85)
T d2p6ra1 2 ITSKLGVET-HLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEI-SLSYELERVVRQLENWGMVVEAA---HLAPTKL 76 (85)
T ss_dssp CCCCCCSHH-HHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCC-CCHHHHHHHHHHHHHTTSEEESS---SEEECHH
T ss_pred ceeCCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhh-cHHHHHHHHHHHHHHCCCccccc---ccccCHH
Confidence 578887544 466779999999999999999999999999865432 23466789999999999998643 3899999
Q ss_pred HHHHHhcCC
Q 000107 1028 GRAAFGSSL 1036 (2191)
Q Consensus 1028 G~a~~~s~L 1036 (2191)
|+.++..||
T Consensus 77 Gri~S~~YI 85 (85)
T d2p6ra1 77 GSLVSRLYI 85 (85)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 999998875
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=5.7e-07 Score=80.66 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=52.8
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
+.++++||+...+..|++|||.|+++||.+++++|..+ .+++...|.+|+++|++++
T Consensus 4 ~~L~~~Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i------------~Gi~e~~a~KIi~~A~k~~ 60 (64)
T d1szpa1 4 EKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEI------------KGISEAKADKLLNEAARLV 60 (64)
T ss_dssp GGGCCTTCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTS------------TTCCHHHHHHHHHHHHHHS
T ss_pred HHHhHCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHc------------CCCCHHHHHHHHHHHHHHc
Confidence 45688999999999999999999999999999999988 6788999999999999975
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.15 E-value=6.8e-06 Score=98.38 Aligned_cols=122 Identities=7% Similarity=0.007 Sum_probs=91.6
Q ss_pred HHHHHHHHHH-hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 767 HIVELCDEVV-QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 767 ~l~~Ll~e~~-~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
.+..++.... ..+.++|||+..+.....+...|.. . +..
T Consensus 105 ~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~----~------------------------------------g~~ 144 (346)
T d1z3ix1 105 VLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN----R------------------------------------RYL 144 (346)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH----H------------------------------------TCC
T ss_pred HHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhh----h------------------------------------hcc
Confidence 3444554443 4578999999998876655444432 1 122
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCc---eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCc
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLV---RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTK 922 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~i---kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~ 922 (2191)
+..+||+++..+|..+.+.|+++.. -+|++|.+.+.|+||+....||.++. ++++..+.|++||+-|.|....
T Consensus 145 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~----~wnp~~~~Qa~~R~~R~GQ~~~ 220 (346)
T d1z3ix1 145 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP----DWNPANDEQAMARVWRDGQKKT 220 (346)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC----CSSHHHHHHHHTTSSSTTCCSC
T ss_pred ccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecC----CCccchHhHhhhcccccCCCCc
Confidence 6779999999999999999997654 36778889999999999888875544 3488899999999999998777
Q ss_pred eEEEEEeChh
Q 000107 923 GESMLICKPE 932 (2191)
Q Consensus 923 Ge~ill~~~~ 932 (2191)
-.+|.++...
T Consensus 221 V~v~rli~~~ 230 (346)
T d1z3ix1 221 CYIYRLLSTG 230 (346)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEeCC
Confidence 7777766553
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=2.8e-06 Score=90.70 Aligned_cols=119 Identities=21% Similarity=0.238 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+.+.+.+....+.|||||+.|...++.++..|.+.. . +
T Consensus 21 ~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g----i----------------------------------~-- 60 (175)
T d1tf5a4 21 KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG----I----------------------------------P-- 60 (175)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT----C----------------------------------C--
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC----C----------------------------------C--
Confidence 34556666777789999999999999998888775421 1 1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC--------ceEEeecCCCCCcccCcccccccccccCCC
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPA--------RRVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPa--------v~VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
...+++....+|-++|-++-..| .|.|||+++.+|.||.- -.+||-+-++. +..-..|..||+||.
T Consensus 61 h~vLnAk~~~~Ea~II~~Ag~~g--~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~----s~Rid~Ql~GR~gRQ 134 (175)
T d1tf5a4 61 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE----SRRIDNQLRGRSGRQ 134 (175)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS----SHHHHHHHHTTSSGG
T ss_pred ceeehhhhHHHHHHHHHhccCCC--ceeehhhHHHcCCCccchHHHHhCCCcEEEEeccCc----chhHHHHHhcchhhh
Confidence 22356666566666666555555 79999999999999842 12555433333 555678999999999
Q ss_pred CCCCceEEEEEeChh
Q 000107 918 GIDTKGESMLICKPE 932 (2191)
Q Consensus 918 G~d~~Ge~ill~~~~ 932 (2191)
| .+|.+.+|++-+
T Consensus 135 G--dpGs~~~~~sle 147 (175)
T d1tf5a4 135 G--DPGITQFYLSME 147 (175)
T ss_dssp G--CCEEEEEEEETT
T ss_pred C--CCcccEEEEEcC
Confidence 9 799988877543
|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=5e-07 Score=82.43 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=56.0
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1228 AEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1228 ~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
+..++.++++||++..++.||+|||.|+++|+.+++.+|..+ .+++...|.+|+++|++++
T Consensus 7 p~~i~~L~~~Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i------------~G~~e~~A~KIi~~a~k~~ 67 (70)
T d1b22a_ 7 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI------------KGISEAKADKILAEAAKLV 67 (70)
T ss_dssp CCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTT------------TTCSTTHHHHHHHHHHHHS
T ss_pred CccHHHHhhCCCCHHHHHHHHHcCcchHHHHHhCCHHHHHHc------------CCCCHHHHHHHHHHHHHHc
Confidence 456777889999999999999999999999999999999998 6788899999999999885
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.50 E-value=0.00012 Score=82.39 Aligned_cols=130 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-.--. +.+|+ |....||-|||+++.+|+.-..+ .|+.+-+|...--||..=++++..++..+|+
T Consensus 77 lG~-RhyDVQLiGgi~--L~~G~--iaem~TGEGKTL~a~l~a~l~al-~g~~vhvvTvNdyLA~RDae~m~~iy~~lGl 150 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVA--LHDGN--IAEMKTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGL 150 (273)
T ss_dssp HSC-CCCHHHHHHHHH--HHTTS--EEECCTTSCHHHHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hce-EEehhHHHHHHH--HHhhh--heeecCCCcchhHHHHHHHHHHh-cCCCceEEecCccccchhhhHHhHHHHHcCC
Confidence 565 788888765433 45554 78999999999999998876655 4777888888889999999999999999999
Q ss_pred eEEEEeccCCCCCC--CCCCceEEEchHHH-HHHHHH-hh---hcCCCCccceEEEccccccc
Q 000107 600 HVRSYYGNQGGGSL--PKDTSVAVCTIEKA-NSLVNR-ML---EEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l--~~~~~IiV~TpEkl-~~Ll~~-l~---~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+........... .-.+||+++|...+ .+.++. +. .....+.+.+.||||+|-+.
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 99876543321100 01379999998875 334443 21 12235668999999999764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00015 Score=86.96 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH----hcCCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI----STGKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll----~~g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
..+.+||.+|+.. ++.++.++|.||.|+|||++..- ++..+. ..+.++++++||-.-|....+.+......
T Consensus 147 ~~~~~~Q~~A~~~--al~~~~~vI~G~pGTGKTt~i~~-~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~ 221 (359)
T d1w36d1 147 SDEINWQKVAAAV--ALTRRISVISGGPGTGKTTTVAK-LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 221 (359)
T ss_dssp TTSCCHHHHHHHH--HHTBSEEEEECCTTSTHHHHHHH-HHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred cccccHHHHHHHH--HHcCCeEEEEcCCCCCceehHHH-HHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhh
Confidence 4567899999986 77889999999999999987532 222222 25668999999999888887776554443
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.00042 Score=74.91 Aligned_cols=119 Identities=25% Similarity=0.291 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+++-+.+....|.||||.+.|....|.++..|.+.- + +
T Consensus 21 ~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~g----i----------------------------------~-- 60 (219)
T d1nkta4 21 IAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR----I----------------------------------P-- 60 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT----C----------------------------------C--
T ss_pred HHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhc----c----------------------------------c--
Confidence 45566677778889999999999999998888775521 1 1
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC--------------------------------------
Q 000107 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPA-------------------------------------- 887 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPa-------------------------------------- 887 (2191)
...+++.-...|-.+|-++=+.| .|-|||+++.+|.||-=
T Consensus 61 h~vLNAK~herEAeIIAqAG~~G--aVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (219)
T d1nkta4 61 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 138 (219)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred hhccchhhHHHHHHHHHhcccCC--cEEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHH
Confidence 11245544456666776666666 68899999999999821
Q ss_pred --------------ceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 888 --------------RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 888 --------------v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
=-+||-+.+.. |..-=.|-.||+||.| .+|.+.+|.+-+
T Consensus 139 ~~~~~~~~~V~~~GGL~VIGTErHe----SrRIDnQLRGRsGRQG--DPGsSrFflSLe 191 (219)
T d1nkta4 139 EEASKEAKEVIEAGGLYVLGTERHE----SRRIDNQLRGRSGRQG--DPGESRFYLSLG 191 (219)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCS----SHHHHHHHHHTSSGGG--CCEEEEEEEETT
T ss_pred HHHHHHHHHHHhcCCcEEEeccccc----cccccccccccccccC--CCccceeEEecc
Confidence 12444322221 2222368899999999 799998887643
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.0001 Score=64.04 Aligned_cols=51 Identities=31% Similarity=0.319 Sum_probs=46.4
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
.|-+|||||..+||.|++. |.|+++|.+|++++|.++ ++++..+|++|++.
T Consensus 3 ~L~~I~gVG~~~a~~L~~~-F~s~~~i~~As~eeL~~v------------~GIg~~~A~~I~~~ 53 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKV------------PGISQGLAEKIFWS 53 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTS------------SSTTSHHHHHHHHH
T ss_pred CcccCCCccHHHHHHHHHH-hCCHHHHHHhhHHHHHhc------------CCCCHHHHHHHHHH
Confidence 3678999999999999999 999999999999999988 57888899999874
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0027 Score=68.08 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCC
Q 000107 1157 YVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTI 1236 (2191)
Q Consensus 1157 y~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~i 1236 (2191)
++-++|+..++..++.. .| ..|...+.++|.+++.++..+|-.-||......+-.|.+.|..|++++--+|+++
T Consensus 51 K~~~Llqa~l~r~~l~~---sl---~~D~~~I~~~~~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Ql 124 (176)
T d2q0zx1 51 KTNLLLQAHLSRMQLSA---EL---QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 124 (176)
T ss_dssp HHHHHHHHHHTTCCCCH---HH---HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGS
T ss_pred HHHHHHHHHHcCCCCCH---HH---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 47788899998876531 22 4677789999999999999999999998888889999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHh
Q 000107 1237 PYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271 (2191)
Q Consensus 1237 p~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~ 1271 (2191)
|+++...++.|-++|++|+.+|...+++++..++.
T Consensus 125 p~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~ 159 (176)
T d2q0zx1 125 PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQ 159 (176)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHC
T ss_pred CcCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHc
Confidence 99999999999999999999999999999999874
|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Aeropyrum pernix [TaxId: 56636]
Probab=96.63 E-value=0.00072 Score=61.46 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=46.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
.-|..|||||.++|++|++. |.|+.+|.+|++++|.++ .+++...|..|.+.
T Consensus 13 ~~L~~IpgIG~~~a~~L~~~-F~s~~~l~~As~eeL~~v------------~GIG~~~A~~I~~~ 64 (70)
T d2bgwa1 13 YILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKV------------EGIGEKRAEEIKKI 64 (70)
T ss_dssp HHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHS------------TTCCHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHH-hCCHHHHHHcCHHHHHcC------------CCCCHHHHHHHHHH
Confidence 33669999999999999999 999999999999999988 67888899988873
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.24 E-value=0.0027 Score=73.29 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHh
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLL 594 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~ 594 (2191)
+|+|-|.+|+.. ...+++|.|+.|||||.+...-+...+.. +..+++|+++++++|.++..++.++.
T Consensus 1 ~L~~eQ~~av~~----~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC----CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 588999999964 35679999999999998876544433332 23589999999999999888776653
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0031 Score=55.67 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=34.6
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
|.+|||||..+|+.|. ..|+|+++|++|+.++|.++.
T Consensus 5 L~~iPGIg~~~~~~Ll-~~f~Si~~l~~As~~eL~~v~ 41 (62)
T d2a1ja1 5 LLKMPGVNAKNCRSLM-HHVKNIAELAALSQDELTSIL 41 (62)
T ss_dssp HHTSTTCCHHHHHHHH-HHCSSHHHHHTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHH-HHhccHHHHHhCCHHHHHHCc
Confidence 5799999999999998 589999999999999999995
|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.75 E-value=0.0028 Score=57.05 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=45.4
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
|-.|||||..+|+.|.+. |.|+++|.+|+.++|.++ ++++..+|++|.+.
T Consensus 12 L~~I~gIG~~~a~~L~~~-f~s~~~i~~As~eeL~~i------------~GIG~~~A~~I~~~ 61 (68)
T d1x2ia1 12 VEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKV------------EGIGEKIAKEIRRV 61 (68)
T ss_dssp HTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTS------------TTCCHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHH-cCCHHHHHHhHHHHHHhC------------CCcCHHHHHHHHHH
Confidence 558999999999999999 999999999999999987 67888899988763
|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA excision repair protein ERCC-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0033 Score=58.17 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=46.9
Q ss_pred hhhhhh-cCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1228 AEIVEL-TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1228 ~ELl~L-~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
+.++.. ..|||||...|+.|.+. |.|+++|.+|+.++|..+ ++++...|++|.+.
T Consensus 15 ~~~~~~L~~I~gIg~~~a~~L~~~-F~s~~~i~~A~~eeL~~i------------~GiG~~~A~~i~~~ 70 (78)
T d2a1jb1 15 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC------------PGLGPQKARRLFDV 70 (78)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTS------------SSCCSHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHH-hCCcHHHHhhhHHHHHHh------------hhhhHHHHHHHHHH
Confidence 344554 49999999999999999 999999999999999887 57788888888773
|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of T7 DNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=95.56 E-value=0.042 Score=59.28 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=82.8
Q ss_pred EEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHHHH
Q 000107 1511 FYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIG 1590 (2191)
Q Consensus 1511 ~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1590 (2191)
+.||+|++++. ...-.|.++++.+.+..-++.-..++ ....++.+.
T Consensus 2 l~~DIET~gl~----~~~~~I~ci~~~d~~~~~~~~~~~~~------------------------------~~~~l~~~~ 47 (204)
T d1x9ma1 2 IVSDIEANALL----ESVTKFHCGVIYDYSTAEYVSYRPSD------------------------------FGAYLDALE 47 (204)
T ss_dssp EEEEEEESSCG----GGCCCEEEEEEEETTTTEEEEECGGG------------------------------HHHHHHHHH
T ss_pred EEEEecCCCCC----CCCCEEEEEEEEECCCCeEEEEeCCC------------------------------chhHHHHHH
Confidence 57999997652 22235778877665544333211100 012345566
Q ss_pred HhhccCCccEEEec-hHHHHHHHHhc-CcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCC-
Q 000107 1591 EIMEKRDVRKFTWN-MKVQIQVLKHA-AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDE- 1667 (2191)
Q Consensus 1591 ~lLe~~~v~kv~hN-lK~dl~vL~~~-gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~- 1667 (2191)
.++.++++ .++|| ..||+.+|+.. +...... +........|+++.+++..|...
T Consensus 48 ~~l~~~D~-ivghN~~~FD~P~L~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
T d1x9ma1 48 AEVARGGL-IVFHNGHKYDVPALTKLAKLQLNRE----------------------FHLPRENCIDTLVLSRLIHSNLKD 104 (204)
T ss_dssp HHHHTTCC-EEESSTTTTHHHHHHHHHHHHHCCC----------------------CCCCGGGEEEHHHHHHHHTTTSCC
T ss_pred HHHhcCCE-EEEEccccccHHHHHHHHHHhccCC----------------------cCcCcchhhhhhhhhhhccccchh
Confidence 67777664 79999 55999998642 2211110 00111235899999999876532
Q ss_pred -----------CCCchhHHHHHH---HhhChHHHHHhh---c----cCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1668 -----------RSSNPNLEKEVK---KRLSSEAAAAAN---R----SGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1668 -----------~~~l~~L~~~~~---~~l~~e~~~~~~---~----~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.+++......+. ..+..+...... . ...|.... +.+..||.+||..|.+||..|.+.+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~L~~~k~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~em~~Yc~qDV~lt~~L~~~l~~~~ 183 (204)
T d1x9ma1 105 TDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN-EEMMDYNVQDVVVTKALLEKLLSDK 183 (204)
T ss_dssp CTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCC-HHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhccccccccchhhhhhhcccCchhhhhccchhhccccchhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223322211111 000001000000 0 01232222 3367899999999999999987654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.026 Score=61.67 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCHHHHHhhhhc--ccccC---CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 524 KLYPWQVECLHVD--GVLQR---RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~g---knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.+||||.+++... .+..+ ..++++||.|+|||..+.. +.+.+.
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~-~a~~l~ 49 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH-HHHhcc
Confidence 4789998877641 12233 3499999999999998754 344554
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.34 E-value=0.013 Score=67.88 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=53.6
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEchhHHHHHHHHHHHHHHh
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVLPYVSICAEKAEHLEVLL 594 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~P~raLA~q~~~~l~~l~ 594 (2191)
..|++-|.+++.. .+..++|.|+.|||||+++.-.+.+.+... ..+++++++++.++.++...+....
T Consensus 10 ~~L~~eQ~~~v~~----~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 10 AHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhC----CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 4689999999974 346799999999999998866555544432 2479999999999999998887654
|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: DNA polymerase beta-like, second domain domain: Terminal deoxynucleotidyl transferase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.29 E-value=0.0053 Score=53.50 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=28.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
+-.|+.|.|||+.+|+.||+.||+|++||.+
T Consensus 7 l~~f~~I~GvGp~~A~~l~~~Gi~ti~dL~~ 37 (60)
T d1jmsa3 7 FKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 37 (60)
T ss_dssp HHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHhCCCCHHHHHh
Confidence 3457899999999999999999999999974
|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: DNA polymerase beta-like, second domain domain: DNA polymerase beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0071 Score=52.06 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=27.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
|--|+.|.|||+.+|+.||+.||+|++||.+
T Consensus 6 l~~l~~I~GvGp~~A~~l~~~Gi~ti~dLr~ 36 (57)
T d2fmpa2 6 INFLTRVSGIGPSAARKFVDEGIKTLEDLRK 36 (57)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred HHHHhccccccHHHHHHHHHhCCCCHHHHHh
Confidence 3456899999999999999999999999975
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.93 E-value=0.048 Score=61.62 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEE
Q 000107 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAY 848 (2191)
Q Consensus 769 ~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~ 848 (2191)
...+...+..|.++++.+||.--+.+....+.+.+...+ ..|+.
T Consensus 122 ~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~------------------------------------~~v~~ 165 (264)
T d1gm5a3 122 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN------------------------------------IHVAL 165 (264)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS------------------------------------CCEEE
T ss_pred HHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhcc------------------------------------cccee
Confidence 344455667899999999999888888877777664432 23889
Q ss_pred EcCCCCHHHHHHHHHHhhcCCceEEEeccccc-ccCCCCCceEE-ee
Q 000107 849 HHAGLTVEEREVVETCYRKGLVRVLTATSTLA-AGVNLPARRVI-FR 893 (2191)
Q Consensus 849 hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa-~GVNLPav~VV-I~ 893 (2191)
+||+++..+|..+....++|.++|+|+|..+- ..+.+.+..+| ||
T Consensus 166 l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiD 212 (264)
T d1gm5a3 166 LIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 212 (264)
T ss_dssp CCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred eccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeeec
Confidence 99999999999999999999999999997654 45777676554 54
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.80 E-value=0.078 Score=57.74 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=56.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT 617 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~ 617 (2191)
+++.++++||||+|||+...-... ++...|+++.+|. .+|.-|.++.+.+.+. +|+.+....
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~-~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~i~~~~~~------------ 68 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR-YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR---LSIPVIQGP------------ 68 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH-HHHTTTCCEEEECCCCSSTTHHHHHHHHHHH---HTCCEECCC------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCcEEEEEeccccccchhhHhhcccc---cCceEEecc------------
Confidence 457788999999999988764433 4445677776665 5788888887666554 354442111
Q ss_pred ceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 618 ~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+...+...+.........++.++|+||=+=+.
T Consensus 69 -----~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 69 -----EGTDPAALAYDAVQAMKARGYDLLFVDTAGRL 100 (207)
T ss_dssp -----TTCCHHHHHHHHHHHHHHHTCSEEEECCCCCC
T ss_pred -----CCccHHHHHHHHHHHHHHCCCCEEEcCccccc
Confidence 11112223322212223446789999988664
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.59 E-value=0.12 Score=56.19 Aligned_cols=95 Identities=23% Similarity=0.245 Sum_probs=56.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCC
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT 617 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~ 617 (2191)
+.+.+++++|||+|||+...-... ++..++.++.+|. .+|.-|.++.+.+.+. +++.+....
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~-~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~v~~~~~~------------ 72 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLAL-YYKGKGRRPLLVAADTQRPAAREQLRLLGEK---VGVPVLEVM------------ 72 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHHTTCCEEEEECCSSCHHHHHHHHHHHHH---HTCCEEECC------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHHCCCcEEEEecccccchHHHHHHHHHHh---cCCcccccc------------
Confidence 344467799999999988765443 3445677777666 5888888877666554 355443211
Q ss_pred ceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 618 ~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+++..............+.+.++|+||=+=+..
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~ 105 (207)
T d1ls1a2 73 -----DGESPESIRRRVEEKARLEARDLILVDTAGRLQ 105 (207)
T ss_dssp -----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred -----ccchhhHHHHHHHHHHhhccCcceeecccccch
Confidence 222222222211112234567899999886643
|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: DNA polymerase beta-like, second domain domain: DNA polymerase lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.013 Score=50.40 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=26.4
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
++.|-|||+.+|+.||+.|++|++||..
T Consensus 10 ft~I~GvGp~~A~~l~~~Gi~ti~dLr~ 37 (57)
T d2bcqa2 10 FSNIWGAGTKTAQMWYQQGFRSLEDIRS 37 (57)
T ss_dssp HHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HhccccccHHHHHHHHHhCCCCHHHHHh
Confidence 5899999999999999999999999975
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.17 Score=55.12 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=55.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceE
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVA 620 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~Ii 620 (2191)
.+++++|||+|||+...-... ++...++++.+|. .+|.=|.++.+.+.+. +|+.+....
T Consensus 11 vi~lvGptGvGKTTTiAKLA~-~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~v~~~~~~--------------- 71 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVEQLQVWGQR---NNIPVIAQH--------------- 71 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-HHHTTTCCEEEECCCTTCHHHHHHHHHHHHH---TTCCEECCS---------------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHCCCcEEEEecccccccchhhhhhhhhh---cCCcccccc---------------
Confidence 466899999999988765443 3445667776666 5677787776655444 455543211
Q ss_pred EEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 621 VCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 621 V~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
+++.+..++.+.......++.++|+||=+=+
T Consensus 72 --~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr 102 (211)
T d2qy9a2 72 --TGADSASVIFDAIQAAKARNIDVLIADTAGR 102 (211)
T ss_dssp --TTCCHHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred --cCCCHHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 2222333444333333346689999998754
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.14 Score=56.63 Aligned_cols=93 Identities=9% Similarity=0.105 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcC
Q 000107 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLP 843 (2191)
Q Consensus 764 d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~ 843 (2191)
+.......+...+..|+++++.+|+.--+.+....+.+.+...+
T Consensus 89 KT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~------------------------------------ 132 (233)
T d2eyqa3 89 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP------------------------------------ 132 (233)
T ss_dssp THHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTT------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCC------------------------------------
Confidence 34445566667778899999999998887777777766554322
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccccc-ccCCCCCceEEe
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLA-AGVNLPARRVIF 892 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa-~GVNLPav~VVI 892 (2191)
..|+.+|+.++..+|..+...+.+|.++|||.|..+- ..+.+++..+||
T Consensus 133 ~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiI 182 (233)
T d2eyqa3 133 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 182 (233)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCcccccccee
Confidence 2388999999999999999999999999999997554 467888877654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.79 E-value=0.16 Score=55.26 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=48.7
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..++++||||+|||+...-... ++..+|+++.+|. .+|.=|.++.+.+.+. +|+.+...
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~-~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~---l~v~~~~~--------------- 73 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAY-FYKKKGFKVGLVGADVYRPAALEQLQQLGQQ---IGVPVYGE--------------- 73 (211)
T ss_dssp EEEEEECSCCC----HHHHHHH-HHHHTTCCEEEEECCCSSHHHHHHHHHHHHH---HTCCEECC---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHHCCCceEEEEeeccccchhHHHHHhccc---cCcceeec---------------
Confidence 4567799999999988664443 3445666666555 4778787776655544 45554311
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
-+++.+...+.+........+.++|+||=+=+
T Consensus 74 --~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 74 --PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR 105 (211)
T ss_dssp --TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred --ccchhhhHHHHHHHHHhhccCCceEEEecCCc
Confidence 01112222233222222345679999997754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.94 E-value=0.37 Score=52.37 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=54.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..++++||||+|||+...-... ++..+++++.+|. .+|.=|.++.+.+.+. +|+.+.....
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa-~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~---l~i~~~~~~~------------- 74 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAK-MFVDEGKSVVLAAADTFRAAAIEQLKIWGER---VGATVISHSE------------- 74 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHHTTCCEEEEEECTTCHHHHHHHHHHHHH---HTCEEECCST-------------
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHHCCCceEEEeecccccchhHHHHHHhhh---cCccccccCC-------------
Confidence 4677899999999988764443 3445566665554 6888888777655443 4555432111
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
++.+..++.........++.++|+||=+=+.
T Consensus 75 ----~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~ 105 (213)
T d1vmaa2 75 ----GADPAAVAFDAVAHALARNKDVVIIDTAGRL 105 (213)
T ss_dssp ----TCCHHHHHHHHHHHHHHTTCSEEEEEECCCC
T ss_pred ----CCcHHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 1112222222222223457789999988653
|
| >d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: NusA extra C-terminal domains domain: Transcription elongation protein NusA species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.052 Score=47.94 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1238 YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKA 1304 (2191)
Q Consensus 1238 ~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~~~a 1304 (2191)
.|...-|..|..-||.|+++||-+++++|..| .++...+|..+.+.|+..|...|
T Consensus 13 dVDe~lA~lLv~EGF~siEeIAyv~~~eL~~I------------egfDee~a~eL~~RA~~~L~~~a 67 (68)
T d1u9la_ 13 DIDEDFATVLVEEGFSTLEELAYVPMKELLEI------------EGLDEPTVEALRERAKNALATIA 67 (68)
T ss_dssp TCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS------------TTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhccCcHHHHhcCCHHHHHHh------------cccCHHHHHHHHHHHHHHHHHHh
Confidence 57788899999999999999999999999988 56777889999999988876443
|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: NAD+-dependent DNA ligase, domain 3 domain: NAD+-dependent DNA ligase, domain 3 species: Thermus filiformis [TaxId: 276]
Probab=92.61 E-value=0.1 Score=55.57 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=71.8
Q ss_pred HhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHH
Q 000107 1165 LVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244 (2191)
Q Consensus 1165 li~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RA 1244 (2191)
|++.--+..++.-|.+...++..| +.+|-.....++..+...-.-.. .-++-=+.||+||...|
T Consensus 57 L~~~g~i~~~~Dly~L~~~~l~~l---------------~~~g~ksa~nl~~~Ie~sk~~~l-~r~l~aLGI~~vG~~~A 120 (181)
T d1dgsa1 57 LLEKGLVRDVADLYHLRKEDLLGL---------------ERMGEKSAQNLLRQIEESKHRGL-ERLLYALGLPGVGEVLA 120 (181)
T ss_dssp HHHTTSCSSGGGGGGGCCHHHHTT---------------SSCCSTTHHHHHHHHHHGGGCCH-HHHHHHTTCSSCCHHHH
T ss_pred HhhcCCcchhhhhhhhhhHHHhcc---------------cccchHHHHHHHHHHHhhcchhH-HHHHHHHHhhhhhHHHH
Confidence 333333445555666665554433 12333445556666655444333 33444568999999999
Q ss_pred HHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1245 R~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
+.|-+. |.|+++|..|+.++|..+ ++++..+|.+|++--+
T Consensus 121 k~La~~-f~sl~~l~~as~eeL~~I------------~GIG~~~A~si~~ff~ 160 (181)
T d1dgsa1 121 RNLARR-FGTMDRLLEASLEELIEV------------EEVGELTARAILETLK 160 (181)
T ss_dssp HHHHHT-TSBHHHHTTCCHHHHHTS------------TTCCHHHHHHHHHHHH
T ss_pred HHHHHH-hhhhhhhhhhHHHHHhhc------------CCcCHHHHHHHHHHHC
Confidence 999998 999999999999999987 6799999999998543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.38 E-value=0.44 Score=53.36 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=34.5
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.++..|.-+++.|+||+|||..+...+++.....|.+++|+..
T Consensus 30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 3578899999999999999987766666555567888998863
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.35 E-value=0.68 Score=50.19 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
..+++.||+|+|||-.+ .++.+.+...+..++|+ +...+..+..
T Consensus 37 n~l~l~G~~G~GKTHLl-~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYS-SADDFAQAMV 80 (213)
T ss_dssp SSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEE-EHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHH-HHHHHHhccCccceEEe-chHHHHHHHH
Confidence 34899999999999765 44555666667666665 4444444433
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.30 E-value=0.37 Score=53.53 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
+.+++.||+|+|||+.+..
T Consensus 41 ~~vLL~GppGtGKT~la~a 59 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAK 59 (246)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 5799999999999988743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.28 E-value=0.21 Score=54.80 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=32.7
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++-.|..+++.||+|+|||+.+...+.+ ....+.+++|+.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~-~~~~~~~~~~is 61 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN-ACANKERAILFA 61 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH-HHTTTCCEEEEE
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhccccceee
Confidence 35667899999999999999988766554 455677888886
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=86.47 E-value=1.3 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=18.9
Q ss_pred ccCCeEEEEcCCCCchhHHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~ 561 (2191)
...+.+++.||+|+|||+++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~i 65 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAI 65 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCeEEeeCCCCCCccHHHHHH
Confidence 34578999999999999987543
|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Interferon-stimulated gene 20 kDa protein, ISG20 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.44 Score=49.36 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhc
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWIL 1662 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL 1662 (2191)
.+.++.+..++++ ...++||++||+.+|+........ . ..+.|+++.+...
T Consensus 66 ~~~~~~~~~~~~~--~~lv~hn~~fD~~~L~~~~~~~~~----------~-----------------~~~~~~~~~~~~~ 116 (173)
T d1wlja_ 66 AVARLEILQLLKG--KLVVGHDLKHDFQALKEDMSGYTI----------Y-----------------DTSTDRLLWREAK 116 (173)
T ss_dssp HHHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCTTCEE----------E-----------------EGGGCHHHHHHHT
T ss_pred HHHHHHHHhhccc--ceEEeechHhHHHHHHHhhccCcc----------c-----------------chhHHHHHHHHHh
Confidence 4566777788765 467999999999999764221100 0 0247898877777
Q ss_pred CCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1663 WPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1663 ~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
.+....+++..| ...+++..... . ...+.|..||.+|..||..+.+
T Consensus 117 ~~~~~~~~L~~L---~~~~~~~~i~~----~---------~~~H~Al~Da~at~~l~~~~~~ 162 (173)
T d1wlja_ 117 LDHCRRVSLRVL---SERLLHKSIQN----S---------LLGHSSVEDARATMELYQISQR 162 (173)
T ss_dssp C-----CCHHHH---HHHHTCCCCSC----C---------TTCCCHHHHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHH---HHHHhCCcccC----C---------CCCCChHHHHHHHHHHHHHHHH
Confidence 776666665544 33333221100 0 1124578899999998866553
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.44 E-value=0.85 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~i 562 (2191)
...|+|+.||+|.|||.+.+-.+
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHH
Confidence 35789999999999998877444
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.31 E-value=2.6 Score=44.84 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+.++++.||.|+|||..+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~ 34 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLE 34 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357999999999999988753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.49 E-value=2 Score=46.87 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
..+|+.||+|+|||..+.+ +.+.+.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~-~~~~l~ 59 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARL-LAKGLN 59 (239)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred eeEEEECCCCCcHHHHHHH-HHHHhc
Confidence 4589999999999998764 455554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.38 E-value=0.83 Score=49.82 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++|++||+|+|||+.+.+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~ 54 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHV 54 (239)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 6899999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.10 E-value=1.5 Score=48.48 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=25.4
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
...+.+++.||+|+|||+++...+ +. -+...++|-+
T Consensus 40 ~~~~giLl~GppGtGKT~la~aia-~~---~~~~~~~i~~ 75 (247)
T d1ixza_ 40 RIPKGVLLVGPPGVGKTHLARAVA-GE---ARVPFITASG 75 (247)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHH-HH---TTCCEEEEEH
T ss_pred CCCceEEEecCCCCChhHHHHHHH-HH---cCCCEEEEEh
Confidence 345789999999999999885443 22 3556666654
|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase iota species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.56 Score=52.88 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=36.1
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
||-.|||||+..++.|...|++|+.||++.+...|.+.+
T Consensus 209 pv~~l~GiG~~~~~~L~~~GI~ti~dl~~~~~~~L~~~f 247 (273)
T d1zeta2 209 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKEL 247 (273)
T ss_dssp SGGGSTTCCHHHHHHHHTTTCCSHHHHHHSCHHHHHHHH
T ss_pred chHHhcCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHHH
Confidence 567899999999999999999999999999999888875
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=83.02 E-value=0.65 Score=51.72 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=63.7
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHh----------cCCEEEEEchhHHHHHHHHHHHHHHhhccCCe-----
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS----------TGKMALLVLPYVSICAEKAEHLEVLLEPLGRH----- 600 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~----------~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~----- 600 (2191)
++++.|.-.++.|++|+|||+.+...++. +.. .+.+++|+.-- .-..++..++..+...++..
T Consensus 24 ~G~~pg~~~~i~G~~G~GKS~l~l~la~~-ia~g~~~~~~~~~~~~~vl~~~~E-~~~~~~~~Rl~~~~~~~~~~~~~~~ 101 (274)
T d1nlfa_ 24 PNMVAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAE-DPPTAIHHRLHALGAHLSAEERQAV 101 (274)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESS-SCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCccCCcEEEEEeCCCCCHHHHHHHHHHH-HHcCCCcccccccCCCceEEEecc-chHHHHHHHHHHHhhccChhhhhcc
Confidence 34777999999999999999887665543 332 23467777522 11233444444443322210
Q ss_pred --EEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc--cchhHHHHHHHHHHHHhh
Q 000107 601 --VRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD--QNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 601 --V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d--~~RG~~lE~lL~kLr~~~ 674 (2191)
...+.... +........+.+..+.. ....+++||||-+..+.. ......+..++..|+.++
T Consensus 102 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la 166 (274)
T d1nlfa_ 102 ADGLLIQPLI-------GSLPNIMAPEWFDGLKR------AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 166 (274)
T ss_dssp HHHEEECCCT-------TSCCCTTSHHHHHHHHH------HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred cccceecccc-------CccchhHHHHHHHHHHH------hccCccEEecCchhhhccccccchhhHHHHHHHHHHHh
Confidence 00011100 00111112222222222 234678999999987642 223444556667776554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.83 E-value=1.8 Score=43.46 Aligned_cols=90 Identities=22% Similarity=0.145 Sum_probs=52.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEE
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVC 622 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~ 622 (2191)
=-++.||-.||||.-..- .+++....|++++++-|...- .. +-.+....| . .-..+.+.
T Consensus 4 L~~i~GpMfsGKTteLi~-~~~~~~~~~~kv~~ikp~~D~----------R~---~~~i~s~~g------~-~~~~~~~~ 62 (139)
T d2b8ta1 4 IEFITGPMFAGKTAELIR-RLHRLEYADVKYLVFKPKIDT----------RS---IRNIQSRTG------T-SLPSVEVE 62 (139)
T ss_dssp EEEEECSTTSCHHHHHHH-HHHHHHHTTCCEEEEEECCCG----------GG---CSSCCCCCC------C-SSCCEEES
T ss_pred EEEEEccccCHHHHHHHH-HHHHHHHCCCcEEEEEEcccc----------cc---cceEEcccC------c-eeeeEEec
Confidence 347889999999976543 344455578899999986220 00 111111011 1 11234555
Q ss_pred chHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 623 TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+...+...+. ......++++|.|||++.+.+
T Consensus 63 ~~~~~~~~~~---~~~~~~~~dvI~IDE~QFf~d 93 (139)
T d2b8ta1 63 SAPEILNYIM---SNSFNDETKVIGIDEVQFFDD 93 (139)
T ss_dssp STHHHHHHHH---STTSCTTCCEEEECSGGGSCT
T ss_pred cchhhHHHHH---hhccccCcCEEEechhhhcch
Confidence 5444333332 334456889999999999753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.06 E-value=0.77 Score=50.25 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.++++.||+|+|||+++- .+++.+.
T Consensus 34 ~~lll~Gp~G~GKTt~~~-~la~~l~ 58 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCM-ALLESIF 58 (252)
T ss_dssp CCEEEECSTTSSHHHHHH-THHHHHS
T ss_pred CeEEEECCCCCCHHHHHH-HHHHhhc
Confidence 469999999999999874 4445543
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=81.94 E-value=0.71 Score=55.00 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=43.1
Q ss_pred cccC-CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 538 VLQR-RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 538 il~g-knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
+..| +..++.|-||||||++..- +++. .++.+|||+|...+|.+.++.|..++.
T Consensus 27 l~~g~~~q~l~GltGS~ka~~iA~-l~~~---~~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 27 LRRGVKHQTLLGATGTGKTFTISN-VIAQ---VNKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp HHHTCSEEEEEECTTSCHHHHHHH-HHHH---HTCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred HhcCCCcEEEeCCCCcHHHHHHHH-HHHH---hCCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 4455 6789999999999977532 2232 477899999999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.82 E-value=1.7 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~i 562 (2191)
...|+++.||.|.|||.+.+-..
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la 60 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLA 60 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHH
Confidence 35799999999999998876543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=80.62 E-value=0.42 Score=55.27 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=40.1
Q ss_pred HHHcCCCCC---CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHH
Q 000107 517 YKKRGISKL---YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582 (2191)
Q Consensus 517 l~~~Gi~~l---~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raL 582 (2191)
|.+.|+-.. .+.+...+.. .+..++|++|+||||||||+.. -+++..+ ....+++.|--+.+|
T Consensus 140 l~~~g~~~~~~~~~~~~~~l~~-~v~~~~nili~G~tgSGKTT~l-~al~~~i-~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 140 FEEQGFYNLLDNKEQAISAIKD-GIAIGKNVIVCGGTGSGKTTYI-KSIMEFI-PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHTTTTTTCSSHHHHHHHHHH-HHHHTCCEEEEESTTSSHHHHH-HHHGGGS-CTTCCEEEEESSCCC
T ss_pred HHHHhhhcccccHHHHHHHHHH-HHHhCCCEEEEeeccccchHHH-HHHhhhc-ccccceeeccchhhh
Confidence 445554332 2445555543 4667899999999999999874 3444433 345677777655554
|
| >d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of prokaryotic DNA polymerase species: Thermus aquaticus [TaxId: 271]
Probab=80.30 E-value=2.1 Score=40.38 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=33.3
Q ss_pred cchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000107 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLV 1727 (2191)
Q Consensus 1652 ~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~ 1727 (2191)
.-|||+.+|||||.+.. ....+.+| .|.|.. -+...+..+.+|+..|...|.
T Consensus 78 gDDPmLlAYLlDPsNT~-----p~~varRY-----------ggew~e--------Da~~RA~~~~rL~~~L~~rl~ 129 (130)
T d1qtma1 78 GDDPMLLAYLLDPSNTT-----PEGVARRY-----------GGEWTE--------EAGERAALSERLFANLWGRLE 129 (130)
T ss_dssp CCCHHHHHHHHCTTCCS-----HHHHHHHH-----------TCCCCS--------CHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHhcCcCCCC-----cchhhHhc-----------CCCCCc--------cHHHHHHHHHHHHHHHHHhhc
Confidence 36999999999997542 22223333 245542 245667778888887776653
|