Citrus Sinensis ID: 000124
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2138 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.102 | 0.333 | 0.267 | 2e-09 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.092 | 0.322 | 0.276 | 4e-09 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.122 | 0.315 | 0.278 | 1e-08 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.104 | 0.340 | 0.270 | 5e-06 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.078 | 0.240 | 0.279 | 8e-06 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.078 | 0.240 | 0.279 | 8e-06 | |
| Q6C5Y8 | 573 | Vacuolar protein 8 OS=Yar | yes | no | 0.105 | 0.392 | 0.258 | 2e-05 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.046 | 0.130 | 0.34 | 2e-05 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.044 | 0.134 | 0.381 | 2e-05 | |
| B9DHT4 | 710 | ARM REPEAT PROTEIN INTERA | no | no | 0.091 | 0.274 | 0.259 | 3e-05 |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 49/269 (18%)
Query: 424 LSQWVSHAEAKKV--LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481
+S + S AEA K+ L+ + + + + L +R AI + I LL+
Sbjct: 342 VSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG 401
Query: 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
LL + QE++V + L+ +++K AI +AG IP +VQ+L+ GS +ARE AA L+
Sbjct: 402 LLSTPDSRIQEHSVTALLNLS-ICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF 460
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL------------------- 582
L E+ + + + GA+P + LL G +G+ +A AL
Sbjct: 461 SLSVIDEN-KVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVI 519
Query: 583 ---TKLIRAADSATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637
T+L+ S +++ LA+L L P KA ++G ++
Sbjct: 520 PTLTRLLTEPGSGMVDEALAILAILSSHPEGKA----IIG-----------------SSD 558
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFS 666
+ SLV+ + + + N+E AA+VL L S
Sbjct: 559 AVPSLVEFIRTGSPRNRENAAAVLVHLCS 587
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 459 LCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518
L +R V I + I LL++LL S + QE+AV + L+ +++K +I + I
Sbjct: 350 LAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIH-ENNKASIVDSHAI 408
Query: 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDAS 578
P +V++L+ GS + RE AA L+ L E+ + + +AGA+P + LL G P+G+ +
Sbjct: 409 PKIVEVLKTGSMETRENAAATLFSLSVVDEN-KVTIGAAGAIPPLINLLCDGSPRGKKDA 467
Query: 579 AMALTKL-------IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631
A A+ L +RA + + L+ L+ + + +L +L + +V
Sbjct: 468 ATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLS-ILAGNPEGKIV-- 524
Query: 632 GSAANKGLRSLVQVLNSSNEENQEYAASVL 661
A ++ + LV+V+ + + N+E AA++L
Sbjct: 525 -IARSEPIPPLVEVIKTGSPRNRENAAAIL 553
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 15/276 (5%)
Query: 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
K L+ + ++ D + L L + + IG I LL+ LL + QE A
Sbjct: 544 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 603
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554
V + L+ D++K AI AG I PL+ +LE GS +A+E +A L+ L E+ + +
Sbjct: 604 VTALLNLSIN-DNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEEN-KIKI 661
Query: 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKL-IRAADSATINQLLAL-----LLGDSPSS 608
+GA+ + LL +G P+G+ +A AL L I + A I Q A+ L+ +
Sbjct: 662 GQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGM 721
Query: 609 KAHVIKVLGHVLTMALQEDLV-QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667
+ VL ++ T+ + + Q+G G+ LV+V+ + +E AA+ L L +
Sbjct: 722 VDKAVAVLANLATIPEGRNAIGQEG-----GIPLLVEVVELGSARGKENAAAALLQLSTN 776
Query: 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703
C + + V P + L S T A + A+AL
Sbjct: 777 SGRFCNMVLQEGAVPPLVALSQSGTPR-AREKAQAL 811
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 39/262 (14%)
Query: 436 VLIGLITMAT-ADVREYLILSLTKL--CRREVG-IWEAIGKREGIQLLISLLGLSSEQHQ 491
+L+ L+T++ + +E+ + S+ L C+ G I + G GI + +L S + +
Sbjct: 401 LLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGI---VHVLQKGSMEAR 457
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E A + L+ +D++K I AAG IPPLV LL GSQ+ ++ AA L+ LC +
Sbjct: 458 ENAAATLFSLS-VIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKG 516
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL---------IRAADSATINQLLALLL 602
V AG VP + LL D S L L + AAD+ + L+ +
Sbjct: 517 KAVR-AGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPV--LVDFIR 573
Query: 603 GDSPSSKAHVIKVLGHVLT--------------MALQEDLVQKGSAANKGLRSLVQVLN- 647
SP +K + VL H+ + M L ++ + G+ ++G R Q+LN
Sbjct: 574 SGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGT--DRGKRKAAQLLNR 631
Query: 648 --SSNEENQEYAASVLADLFSM 667
N++ ++++ L D S+
Sbjct: 632 FSRFNDQQKQHSGLGLEDQISL 653
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QE+AV + L+ +D+K +I ++G +P +V +L+ GS +ARE AA L+ L E
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDE-Y 483
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL----------IRAADSATINQLLAL 600
+ + GA+PA + LL G +G+ +A AL L IRA L+ L
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAG-------LVPL 536
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
++G + ++ +L++ + A + + LV+++ S N+E AA+V
Sbjct: 537 IMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAV 596
Query: 661 LADLFS 666
+ L S
Sbjct: 597 MLHLCS 602
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E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QE+AV + L+ +D+K +I ++G +P +V +L+ GS +ARE AA L+ L E
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDE-Y 483
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL----------IRAADSATINQLLAL 600
+ + GA+PA + LL G +G+ +A AL L IRA L+ L
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAG-------LVPL 536
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
++G + ++ +L++ + A + + LV+++ S N+E AA+V
Sbjct: 537 IMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAV 596
Query: 661 LADLFS 666
+ L S
Sbjct: 597 MLHLCS 602
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Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 11/236 (4%)
Query: 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD 114
P + T + IA + + L S + + I ++ SG+P + A L L D
Sbjct: 245 PDVQYYSTTALSNIAVDESNRKKLSSSEPRLVEHLIKLMDSGSPRVQCQAALALRNLASD 304
Query: 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVP 174
D +L+++ +P L +L +S T AA + +S L++ + + G +
Sbjct: 305 SDYQLEIVKANGLPHLFNLFQSTHTPLVLAAVACIRNISIHPLNETPI-----IEAGFLK 359
Query: 175 TLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQS 234
TL + L + ++ +Q LRNL + +EAG V L+ QS
Sbjct: 360 TLVELLGASDNEE--IQCHTISTLRNLAASSERNKLEIVEAGAVQKCKELVLDAPRLVQS 417
Query: 235 NAASLLARLMLAFGDSIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289
+ LA +LA GD + T+++ G + L+ L +N I V+ ++A AL LSSK
Sbjct: 418 EMTACLA--VLALGDELKGTLLELGIAEVLIPLTLSDN-IEVQGNSAAALGNLSSK 470
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
+ AV L+A L+ V + + AI GGIP LV+ ++ GSQ+ +E AA VL LC +S
Sbjct: 655 DKAVALLANLS-AVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFC 713
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
V GA+P + L +SG + ++ + L+ D+
Sbjct: 714 TLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDA 753
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E AV ++A L V + K AI GGIP LV+++E GS + +E A L LC HS
Sbjct: 604 EKAVVVLANLA-TVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFC 662
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588
V G +P + L KSG +G++ A L K +A
Sbjct: 663 NNVIREGVIPPLVALTKSGTARGKE-KAQNLLKYFKA 698
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 85 AMPLFISILR---SGTPLAKVN------VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK 135
A+P +++L+ G+ VN A ++ ++ ++ +V + G IPPL+ LL+
Sbjct: 149 ALPHLVNLLKRNKDGSSSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLE 208
Query: 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195
+ ++AAA AL ++ +DD+ V +PTL L +D +
Sbjct: 209 FSDSKVQRAAAGALRTLAFK--NDDNKNQ--IVECNALPTLILMLG---SEDAAIHYEAV 261
Query: 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
G + NL + L AG + ++GLLSS +Q AA LL + D ++
Sbjct: 262 GVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAALLLGQFASTDSDCKVHIV 321
Query: 256 DSGAVKALVQLVGQNNDISVRASAADALEALS 287
GAV+ L++++ Q+ D+ ++ +A AL L+
Sbjct: 322 QRGAVRPLIEML-QSPDVQLKEMSAFALGRLA 352
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May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2138 | ||||||
| 225459601 | 2109 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.999 | 0.855 | 0.0 | |
| 356500376 | 2108 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 1.0 | 0.823 | 0.0 | |
| 356552701 | 2108 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 1.0 | 0.820 | 0.0 | |
| 224084912 | 2106 | predicted protein [Populus trichocarpa] | 0.984 | 0.999 | 0.819 | 0.0 | |
| 255558634 | 2095 | ubiquitin-protein ligase, putative [Rici | 0.976 | 0.996 | 0.807 | 0.0 | |
| 449449757 | 2105 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 1.0 | 0.782 | 0.0 | |
| 449500671 | 2105 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.984 | 1.0 | 0.781 | 0.0 | |
| 302141793 | 2026 | unnamed protein product [Vitis vinifera] | 0.893 | 0.943 | 0.828 | 0.0 | |
| 297839607 | 2135 | C2 domain-containing protein [Arabidopsi | 0.991 | 0.992 | 0.699 | 0.0 | |
| 186496022 | 2136 | armadillo/beta-catenin-like repeat and C | 0.998 | 0.999 | 0.695 | 0.0 |
| >gi|225459601|ref|XP_002285869.1| PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3601 bits (9337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1805/2109 (85%), Positives = 1962/2109 (93%), Gaps = 1/2109 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTMS VA F+EQLHANMSSP E+ELIT R+L IA+A+K+AR LIG+H QAMPLFI
Sbjct: 1 MDDPESTMSRVAHFVEQLHANMSSPHEKELITARLLGIARARKDARTLIGTHVQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
S+LRSGTP+AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL+LLKSEST+ RKAAAEALY
Sbjct: 61 SVLRSGTPVAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLALLKSESTEARKAAAEALY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVP LWDQLNPKNKQD VV+GFVTGALRNLCGDK+GYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPNLWDQLNPKNKQDKVVEGFVTGALRNLCGDKNGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLL SDNAAAQSNAASLLARLMLAF DSIP VIDSGAVKAL++L+GQ
Sbjct: 181 ATLEAGGVDIIVGLLYSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAVKALLRLLGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS +AKKAVV ADGVPVLIGAIVAPSKECMQG+ GQALQGHA
Sbjct: 241 NDISVRASAADALEALSSKSTRAKKAVVDADGVPVLIGAIVAPSKECMQGECGQALQGHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELSQSPRLAAPVADIIGALAY+LMVFEQ+SGV++EPFD Q
Sbjct: 301 TRALANICGGMSALIMYLGELSQSPRLAAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILVMLLKP DNKLVQERVLEA+ASLY N +LS+W++HAEAKKVLI LITMA AD +E
Sbjct: 361 IEDILVMLLKPRDNKLVQERVLEALASLYSNKYLSRWINHAEAKKVLIALITMAAADAQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLIL+LT LC VG+WEAIG REGIQLLISLLGLSSEQHQEYAVQL+AILT+QVDDSKW
Sbjct: 421 YLILALTSLCCDGVGLWEAIGMREGIQLLISLLGLSSEQHQEYAVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AAHVLW LCCHSEDIRACVESAGAVPAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLEIGSQKAREDAAHVLWNLCCHSEDIRACVESAGAVPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G KGQ+ASAMAL KL+R ADSATINQLLALLLGDSPSSKAH+I+VLGHVLTMA EDLV
Sbjct: 541 GLKGQEASAMALGKLVRTADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASHEDLVH 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGSAANKGL SLVQVLNSSNEE QEYAASVLADLFS RQDIC SLATDEIV+PCM+LLTS
Sbjct: 601 KGSAANKGLTSLVQVLNSSNEETQEYAASVLADLFSTRQDICDSLATDEIVHPCMKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ++ATQSARALGALSRPTK K TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN
Sbjct: 661 KTQVIATQSARALGALSRPTKAKATNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSDP IAAE L EDVVSALTRVL EGTSEGKKNASRALHQLLKHFPVGDVL GNAQCRF
Sbjct: 721 LLSDPQIAAEALEEDVVSALTRVLGEGTSEGKKNASRALHQLLKHFPVGDVLTGNAQCRF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSLN+MD++GTD ADALEVVALLAR KQ +NFTY PW+ALAEVPSS+E LV CL
Sbjct: 781 AVLALVDSLNSMDLDGTDAADALEVVALLARMKQSVNFTYSPWSALAEVPSSLESLVRCL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGPP +QDKAIEILSRLCGDQP VLGD L+A+S SIG+LA+RIM+SSSLEVRVGG ALL
Sbjct: 841 AEGPPLVQDKAIEILSRLCGDQPVVLGDLLVAQSRSIGSLANRIMNSSSLEVRVGGTALL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKEHK+ +MDALD+SGYL+PLIYALVDMMKQNSSCSSL+IEVRTPRG+MERTAFQE
Sbjct: 901 ICAAKEHKQAAMDALDVSGYLRPLIYALVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEG 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
+F+VPDPAT+LGGTVALWL+ II SF + +TVMEAG LEALS+KL SY SNPQAEFE
Sbjct: 961 IEFEVPDPATVLGGTVALWLISIICSFHAKSKITVMEAGGLEALSEKLTSYASNPQAEFE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEGIWISAL LAILFQDAN+VL+PATMRIIP+LALL++SDEVIDRFFAAQAMASLVC+G
Sbjct: 1021 DTEGIWISALLLAILFQDANVVLAPATMRIIPSLALLMKSDEVIDRFFAAQAMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
S+GI L IANSGAVAGLITLIG+IE D PNLVALSEEF LVR PD+VVLE LFEIED+RV
Sbjct: 1081 SRGINLTIANSGAVAGLITLIGYIELDMPNLVALSEEFCLVRKPDQVVLENLFEIEDIRV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIPDRPGAPP+AV+LLT+I DGSDTNKLIMAEAG LDALTKYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLTRIADGSDTNKLIMAEAGALDALTKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDS+EA+++EL RILFSNPDL+RYEAS+SSLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSSEASVSELLRILFSNPDLLRYEASISSLNQLIAVLRLGSRNARFSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DAENI+DS+LA QAV PLVDML+AASE E + ALVAL+KLT GN+SKA L+TD++GN LE
Sbjct: 1261 DAENIRDSELARQAVQPLVDMLNAASESEQQAALVALIKLTMGNSSKASLMTDVEGNPLE 1320
Query: 1351 SLYKI-LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESA 1409
SLYKI SS SSLELK NAA+LCF++F KI A P+ASECI+PLI LMQS+ S VES+
Sbjct: 1321 SLYKILSSSTSSLELKGNAAQLCFVLFNIPKIRALPMASECIEPLILLMQSESSTAVESS 1380
Query: 1410 VCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMV 1469
VCAFERLLDDEQ VEL YD+VDL+V LVSG+NH+L+E ++CAL KLGKDRTP KL MV
Sbjct: 1381 VCAFERLLDDEQLVELAAAYDIVDLIVSLVSGSNHQLIETSICALTKLGKDRTPLKLDMV 1440
Query: 1470 KAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSL 1529
KAGIIDNCL+LLPVAPS+LCS+IAELFRILTNSSAI++ S AA+IVEPLFMVLL+PDFS+
Sbjct: 1441 KAGIIDNCLELLPVAPSSLCSSIAELFRILTNSSAISKGSAAARIVEPLFMVLLRPDFSM 1500
Query: 1530 WGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQE 1589
WGQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQE
Sbjct: 1501 WGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQE 1560
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQ 1649
HFQQDITTKNAVVPLVQLAGIGILNLQQTA+KALE IS SWPKAVADAGGIFE+AKVIIQ
Sbjct: 1561 HFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALENISISWPKAVADAGGIFELAKVIIQ 1620
Query: 1650 DDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709
DDPQPPH+LWESAALVLSNVLRFN EYYFKVP+VVLVKMLHSTLESTITVALNAL++HER
Sbjct: 1621 DDPQPPHALWESAALVLSNVLRFNAEYYFKVPLVVLVKMLHSTLESTITVALNALIVHER 1680
Query: 1710 TDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
+D+S+AEQMT+AG IDALLDLLRSHQCEE +GRLLEALFNN R+R+MKVSKYAIAPLSQY
Sbjct: 1681 SDSSNAEQMTEAGAIDALLDLLRSHQCEEPAGRLLEALFNNVRVREMKVSKYAIAPLSQY 1740
Query: 1770 LLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICA 1829
LLDPQTRS+SG+LLAALALGDLSQHEGLARAS SVSACRALISLLEDQ T+EMKMVAICA
Sbjct: 1741 LLDPQTRSQSGRLLAALALGDLSQHEGLARASDSVSACRALISLLEDQPTEEMKMVAICA 1800
Query: 1830 LQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNEL 1889
LQNFVM SRTNRRAVAEAGGILVVQELLLS N++VA QAALL KFLFSNHTLQEYVSNEL
Sbjct: 1801 LQNFVMRSRTNRRAVAEAGGILVVQELLLSPNSDVAAQAALLIKFLFSNHTLQEYVSNEL 1860
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAA 1949
IRSLTAALE+ELWSTATINEEVLRT++VIF NF KLH SEAATLCIPHLVGALKSGS+AA
Sbjct: 1861 IRSLTAALEKELWSTATINEEVLRTINVIFANFHKLHISEAATLCIPHLVGALKSGSDAA 1920
Query: 1950 QGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLP 2009
Q SVLDTLCLL++SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFH++ADSLLHCLP
Sbjct: 1921 QESVLDTLCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDKADSLLHCLP 1980
Query: 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPK 2069
GCLTVTIKRGNNLKQ MG TNAFCRLTIGNGPPRQTKVVSHS SPEWKEGFTWAFDVPPK
Sbjct: 1981 GCLTVTIKRGNNLKQAMGGTNAFCRLTIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPK 2040
Query: 2070 GQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129
GQKLHI+CKSK+TFGK+ LG+VTIQIDKVVTEGVYSGLF+LNHD+NKD SSRTLEIEIIW
Sbjct: 2041 GQKLHILCKSKSTFGKTNLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIW 2100
Query: 2130 SNRISDESI 2138
SNRIS+ES+
Sbjct: 2101 SNRISNESM 2109
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500376|ref|XP_003519008.1| PREDICTED: uncharacterized protein LOC100796864 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3482 bits (9030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1735/2108 (82%), Positives = 1918/2108 (90%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTM+ VA F+EQLHAN+SSP E+E IT R+L IA+ +K+AR +IGSHAQAMPLFI
Sbjct: 1 MDDPESTMAKVANFVEQLHANLSSPVEKETITARLLGIARRRKDARAIIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILR+GTPLAKVNVA+TLSVLCKDEDLRLKVLLGGCIPPLLSLL ESTD RKAAAEA+Y
Sbjct: 61 SILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVPTLW+QLNPKNK+D +V+GF+TGALRNLCGDKDGYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLLSSDNA +QSNAASLLARLMLAF DSIP VIDSGAVKAL+QLVGQ
Sbjct: 181 ATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALE LSSKS KAKK +V ADG+P+LIGAIVAPS ECMQG GQALQ HA
Sbjct: 241 NDISVRASAADALEVLSSKSTKAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELS+SPR APV DIIGALAY LMVFE+K VD++ FDA Q
Sbjct: 301 TRALANICGGMSALILYLGELSRSPRPDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DNKL+QERVLEAMASLYGN+ LS+ + A++KKVLIGLITMA DV+E
Sbjct: 361 IEDILVTLLKPQDNKLIQERVLEAMASLYGNVCLSKCLIQADSKKVLIGLITMAATDVQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC ++G+WEAI KREGIQLLISLLGLSSEQHQEY+VQL+AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AA+VLW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GPKGQ ASAMALTKL+R ADSA INQLLALLLGDSPSSKAH+I+VLGHVLTMA Q DL++
Sbjct: 541 GPKGQQASAMALTKLVRVADSAAINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLE 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGS ANKGLRSLVQVLNSSNEE QEYAASVLADLF RQDIC SLATDEIV PCM+LLTS
Sbjct: 601 KGSVANKGLRSLVQVLNSSNEETQEYAASVLADLFIARQDICDSLATDEIVLPCMKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ+VATQSAR L ALSRPTK K NKMSYI EGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 661 KTQVVATQSARVLSALSRPTKNKAANKMSYIVEGDVKPLIKLAKTSSVDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LL DP IAAE L EDVVSAL RVLAEGT EGK+NASRALHQLLKHFPVGDVLKGN QCRF
Sbjct: 721 LLFDPFIAAEALAEDVVSALARVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGNTQCRF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSL AMDM+GTD ADALEV+ALLARTKQG+N+TYPPW+ALAE+PSS+E LVCCL
Sbjct: 781 TVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNYTYPPWSALAEMPSSLELLVCCL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEG +Q+KAI+ILSRLCGDQP VLGD L A S SIG+LA+RIM+SSSLEV++GG+ALL
Sbjct: 841 AEGHSLVQEKAIKILSRLCGDQPVVLGDLLSASSKSIGSLANRIMNSSSLEVKIGGSALL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKE KK SMD+LD SG+LKPLIY+LV+M+KQ+ S S L+IEV +G+MER++FQE
Sbjct: 901 ICAAKEKKKLSMDSLDASGFLKPLIYSLVEMIKQSCSYSLLEIEVVASKGFMERSSFQEV 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D+FD+PDPAT LG T+A+WLL +I+SF + +T+MEAG LEALSDKL+ +TSNPQAE+E
Sbjct: 961 DEFDIPDPATALGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALSDKLSRHTSNPQAEYE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEG WI+AL LAILFQDAN++LSP TMRIIP++ALLLRSDEVID++FAAQ+MASLVC+G
Sbjct: 1021 DTEGTWINALLLAILFQDANVILSPVTMRIIPSIALLLRSDEVIDKYFAAQSMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+KGI LAIANSGAVAGLIT+IGH+ESD PNL+ALSEEF LV+ PD+VVL+ LFEIEDV+V
Sbjct: 1081 NKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIP+RP APPVAVRLL I DGSD+NKLI+AEAG L+AL KYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPERPTAPPVAVRLLICIADGSDSNKLILAEAGALEALNKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I+EL RILFSN DLI++EAS +SLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSTEAAISELLRILFSNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DA+NI+DS+LA Q + PLVDML+ S E E AL+AL+KLTSGN+SK LL D++GN L+
Sbjct: 1261 DADNIRDSELAKQGIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLLDVEGNPLK 1320
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
LYKILSS SSLELK +AA+LCF +FGN+KI A+P+ASEC++P ISLMQSD +ES V
Sbjct: 1321 CLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPFISLMQSDSETAIESGV 1380
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CAFERLL+DEQQVEL Y+VV LLV LVSGTN++L+EA + LIKLGKDRTP KL MVK
Sbjct: 1381 CAFERLLEDEQQVELAAAYNVVYLLVSLVSGTNYQLIEAAISTLIKLGKDRTPIKLDMVK 1440
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
AGIIDNCL LL +APS+LCSTIAELFRILTNSSAIARSSDAAKIVEPLF VLL+ DF+LW
Sbjct: 1441 AGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAKIVEPLFHVLLRRDFNLW 1500
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQEH
Sbjct: 1501 GQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEH 1560
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKISTSWPKAVADAGGIFE+AKVIIQ+
Sbjct: 1561 FQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQE 1620
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAALVLSNVL N +YYFKVPVVVLVK+LHSTLESTI++ALNAL++H+R+
Sbjct: 1621 DPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRS 1680
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
DASSAEQM +AGVIDALLDLLRSH CEE SGRLLEALFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1681 DASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYL 1740
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+SGKLLAALALGDLSQHEG AR+SASVSACRALISLLEDQ T+EMK+VAICAL
Sbjct: 1741 LDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICAL 1800
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILV+QELLLS N EVA QAALL KFLFS HTLQEYVSNELI
Sbjct: 1801 QNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELI 1860
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSG EAAQ
Sbjct: 1861 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQ 1920
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
SVLDT CLLR SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD+LLHCLPG
Sbjct: 1921 DSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPG 1980
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKG 2070
CLTVTIKRGNNLKQTMG+TNAFCRLTIGNGPP+QTKVV+H+ SPEWKEGFTWAFDVPPKG
Sbjct: 1981 CLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHNTSPEWKEGFTWAFDVPPKG 2040
Query: 2071 QKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130
QKLHIICKSKNTFGK+TLG+VTIQIDKVV+EGVYSGLF+LNHD NKD SSRTLEIEIIWS
Sbjct: 2041 QKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWS 2100
Query: 2131 NRISDESI 2138
NRIS++ I
Sbjct: 2101 NRISNDDI 2108
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552701|ref|XP_003544701.1| PREDICTED: uncharacterized protein LOC100780150 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3471 bits (9000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1730/2108 (82%), Positives = 1919/2108 (91%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTM+TVA F+EQLHAN+SSP E+E+IT +L +A+ +K+AR LIGSHAQAMPLFI
Sbjct: 1 MDDPESTMATVANFVEQLHANLSSPVEKEIITAHLLGMARRRKDARALIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILR+GTPLAKVNVA+TLSVLCKDEDLRLKVLLGGCIPPLLSLL ESTD RKAAAEA+Y
Sbjct: 61 SILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVPTLW+QLNPKNK+D +V+GF+TGALRNLCGDKDGYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLLSSDNA +QSNAASLLARLMLAF DSIP VIDSGAVKAL+QLVGQ
Sbjct: 181 ATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSS+S KAKK +V ADG+P+LI AIVAPS ECMQG GQALQ HA
Sbjct: 241 NDISVRASAADALEALSSQSTKAKKVIVNADGIPILIAAIVAPSNECMQGDGGQALQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELS+SPR +PV DIIGALAY LMVFE+K VD++ F A Q
Sbjct: 301 TRALANICGGMSALILYLGELSRSPRPDSPVGDIIGALAYTLMVFEEKVDVDEKHFGATQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DN L+QERVLEAMASLYGN+ LS+W+ A++KKVLIGLITMA DV+E
Sbjct: 361 IEDILVTLLKPWDNNLIQERVLEAMASLYGNVCLSKWLIQADSKKVLIGLITMAATDVQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC ++G+WEAI KREGIQLLISLLGLSSEQHQEY+VQL+AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCDKIGLWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AA+VLW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GP+GQ+ASAMALTKL+R ADSATINQLLALLLG SPSSK H+I+VLGHVLTMA Q DL++
Sbjct: 541 GPRGQEASAMALTKLVRVADSATINQLLALLLGHSPSSKTHIIRVLGHVLTMASQNDLLE 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGSAANKGLRSLVQVLNSSNEE QEYAASVLADLF RQDIC SLATDEIV PC++LLTS
Sbjct: 601 KGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCVKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ+VATQSARAL ALSRPTK K NKMSYI EGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 661 KTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVKPLIKLAKTSSVDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LL DP IAAE L EDVVSALTRVLAEGT EGK+NASRALHQLLKHFPVGDVLKGNAQC F
Sbjct: 721 LLFDPFIAAEALAEDVVSALTRVLAEGTLEGKRNASRALHQLLKHFPVGDVLKGNAQCCF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSL AMDM+GTD ADALEV+ALLARTKQG+NFTYPPW+ALAE+PSS+E LVC L
Sbjct: 781 TVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNFTYPPWSALAEIPSSLELLVCFL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEG +QDKAI+ILSRLCGDQP VLG+ L A S SIG+LA+RIM+SSSLEV++GG++LL
Sbjct: 841 AEGHSLVQDKAIKILSRLCGDQPVVLGELLSASSKSIGSLANRIMNSSSLEVKIGGSSLL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKE K+ SMD+LD SGYLKPLIY+LV+M+KQN S SSL+IEV T +G+MER +FQE
Sbjct: 901 ICAAKEKKEFSMDSLDASGYLKPLIYSLVEMIKQNCSYSSLEIEVVTSKGFMERNSFQEV 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D+FD+PDPAT LG T+A+WLL +I+SF + +T+MEAG LEAL DKLA +TSNPQAE+E
Sbjct: 961 DEFDIPDPATSLGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALFDKLARHTSNPQAEYE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEGIWI+AL LAILFQD N++LSP TMRIIP++ LLLRSDEVID++FAAQ MASLVC+G
Sbjct: 1021 DTEGIWINALLLAILFQDENVILSPVTMRIIPSITLLLRSDEVIDKYFAAQTMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+KGI LAIANSGAVAGLIT+IGH+ESD PNL+ALSEEF LV+ PD+VVL+ LFEIEDV+V
Sbjct: 1081 NKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIP+RP APPVAVRLL I DGSD+NKLI+AEAG L+AL KYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPERPSAPPVAVRLLLSIADGSDSNKLILAEAGALEALNKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I+EL RILF N DLI++EAS +SLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSTEAAISELLRILFCNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DA NI+DS+LA QA+ PLVDML+ S E E AL+AL+KLTSGN+SK LLTD++GN L+
Sbjct: 1261 DAGNIRDSELAKQAIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLTDVEGNPLK 1320
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
LYKILSS SSLELK +AA+LCF +FGN+KI A+P+ASEC++P ISLMQS+ + S V
Sbjct: 1321 CLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPFISLMQSNSETAIVSGV 1380
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CAFERLL+DEQQVEL Y+VVDLLV LVSGTN++L+EA + LIKLGKDRTP KL MVK
Sbjct: 1381 CAFERLLEDEQQVELAAAYNVVDLLVSLVSGTNYQLIEAAISTLIKLGKDRTPIKLDMVK 1440
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
AGII+NCL+LL +APS+LCSTIAELFRILTNSSAIARSSDAA+IVEPLF VLL+ DF+LW
Sbjct: 1441 AGIINNCLNLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLW 1500
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQEH
Sbjct: 1501 GQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEH 1560
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKISTSWPKAVADAGGIFE+AKVIIQD
Sbjct: 1561 FQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQD 1620
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
+PQPPH+LWESAALVLSNVL N +YYFKVPVVVLVK+LHSTLESTI++ALNAL++H+R+
Sbjct: 1621 EPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRS 1680
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
DASSAEQM +AGVIDALL+LLRSH CEE SGRLLEALFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1681 DASSAEQMMEAGVIDALLELLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYL 1740
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+SGKLLAALALGDLSQHEG AR+SASVSACRALISLLEDQ T+EMK+VAICAL
Sbjct: 1741 LDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICAL 1800
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILV+QELLLS N EV+ QAALL KFLFS HTLQEYVSNELI
Sbjct: 1801 QNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVSAQAALLIKFLFSTHTLQEYVSNELI 1860
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSG EAAQ
Sbjct: 1861 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQ 1920
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
SVLDT CLLR SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD+LLHCLPG
Sbjct: 1921 DSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPG 1980
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKG 2070
CLTVTIKRGNNLKQTMG+TNAFCRLTIGNGPP+QTKVV+HS SPEWKEGFTWAFDVPPKG
Sbjct: 1981 CLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKG 2040
Query: 2071 QKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130
QKLHIICKSKNTFGK+TLG+VTIQIDKVV+EGVYSGLF+LNHD NKD SSRTLEIEIIWS
Sbjct: 2041 QKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWS 2100
Query: 2131 NRISDESI 2138
NRIS++ I
Sbjct: 2101 NRISNDDI 2108
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084912|ref|XP_002307446.1| predicted protein [Populus trichocarpa] gi|222856895|gb|EEE94442.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3453 bits (8954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1726/2107 (81%), Positives = 1893/2107 (89%), Gaps = 3/2107 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDD E TM+ VA+F+E+LH+ +SSP E+EL+T R+L +AKA+KEAR +IGSHAQAMPLFI
Sbjct: 1 MDDSEDTMAVVARFIEKLHSRISSPPEKELVTARLLRLAKARKEARAVIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILRSGT AKVNVA+TLS LCKD+DLR+KVLLGGCIPPLLSLLKSES + RKAAAEA+Y
Sbjct: 61 SILRSGTSGAKVNVASTLSALCKDDDLRVKVLLGGCIPPLLSLLKSESIEARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSG +SDD VG+KIF TEGV PTLW+QLNPKNKQD VVQGFVTGALRNLCGDKD YWR
Sbjct: 121 EVSSGSVSDDQVGIKIFATEGVTPTLWEQLNPKNKQDKVVQGFVTGALRNLCGDKDNYWR 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
A LEAGGVDIIVGLLSSDNA AQSNAASLLARLMLAFGDSIP VIDSGAV+AL+QLVGQN
Sbjct: 181 AMLEAGGVDIIVGLLSSDNATAQSNAASLLARLMLAFGDSIPKVIDSGAVRALLQLVGQN 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS KAK+A+V ADGVP+LIGAIVAPSKECMQG+ GQALQGHA
Sbjct: 241 NDISVRASAADALEALSSKSTKAKEAIVDADGVPILIGAIVAPSKECMQGEFGQALQGHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELSQSPRLAAPVADIIGALAYALMVFE+ + +E FDA +
Sbjct: 301 TRALANICGGMSALILYLGELSQSPRLAAPVADIIGALAYALMVFEKNAATAEETFDATK 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DNKLVQERVLEAMASLYGNI+LS + +AEAKKVLIGLITMA D +E
Sbjct: 361 IEDILVKLLKPRDNKLVQERVLEAMASLYGNIYLSICLDYAEAKKVLIGLITMAVGDPQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC VGIW+AIGKREGIQLLISLLGLSSEQHQEY V+ +AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCGGVGIWDAIGKREGIQLLISLLGLSSEQHQEYGVRFLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLEAGSQKARE AAH+LW LCCHSEDIRACVESAGAVPAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLEAGSQKAREDAAHILWNLCCHSEDIRACVESAGAVPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GPKGQ+ASAMALT+L++ ADS TINQLLALLLGDS SKA+ I+VLGHVLTMA +DLVQ
Sbjct: 541 GPKGQEASAMALTRLVQTADSTTINQLLALLLGDSSGSKAYAIRVLGHVLTMASHKDLVQ 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+GSAAN+ LRSL+Q+LNSS+EE QE AASVLADLF+ RQDIC SLATDEIV+PCM+LLTS
Sbjct: 601 RGSAANQALRSLIQILNSSDEETQESAASVLADLFTTRQDICDSLATDEIVHPCMKLLTS 660
Query: 691 N-TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749
N TQ+VATQ ARALGALSRPTKTK+T KM YIAEGDVKPLIKLAKTS IDAAETA+AALA
Sbjct: 661 NNTQVVATQLARALGALSRPTKTKSTMKMPYIAEGDVKPLIKLAKTS-IDAAETAIAALA 719
Query: 750 NLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
NLLSDP IAAE L EDVV ALTRVL EGTSEGKKNASRALHQLL HFPVGDVL GNAQCR
Sbjct: 720 NLLSDPQIAAEALAEDVVGALTRVLGEGTSEGKKNASRALHQLLIHFPVGDVLGGNAQCR 779
Query: 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCC 869
F VL ++DSLN+M M+GTD+ DALEVVALL R K G+NFTY P A L EVPSS++PL
Sbjct: 780 FSVLAILDSLNSMGMDGTDITDALEVVALLVRMKHGVNFTYLPRAVLLEVPSSLDPLARL 839
Query: 870 LAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL 929
LAEGPP LQDKAIEILS+LCGDQP VLGD L+ARS SI +LA+RI++SSSLEV++GG L
Sbjct: 840 LAEGPPLLQDKAIEILSQLCGDQPGVLGDLLIARSRSIDSLANRIINSSSLEVKIGGITL 899
Query: 930 LICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQE 989
LICAAKEH +QS++ALD+SGYLKPLIYALV++MKQN+ SSL+++VRTPRG+ ER+AFQE
Sbjct: 900 LICAAKEHTQQSVEALDVSGYLKPLIYALVNIMKQNTCYSSLEMQVRTPRGFFERSAFQE 959
Query: 990 ADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEF 1049
D+FDV DP +LGGTVALWLL IISS + + VMEAG LEALSD+L SYTS PQAEF
Sbjct: 960 GDEFDVLDPVIVLGGTVALWLLSIISSIYAKSKLIVMEAGGLEALSDRLFSYTSTPQAEF 1019
Query: 1050 EDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCS 1109
EDTEGIWISAL LA LFQD NIVLSP TM IIP+LA L+RSDEVID+FFAAQAMASLVC+
Sbjct: 1020 EDTEGIWISALLLAFLFQDPNIVLSPTTMHIIPSLAHLMRSDEVIDKFFAAQAMASLVCN 1079
Query: 1110 GSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVR 1169
GSKGI L IANSGAVAGLITLIG IE D PNLVALSEEF LVR PD+V+LE LFEIEDVR
Sbjct: 1080 GSKGISLTIANSGAVAGLITLIGFIELDMPNLVALSEEFSLVRSPDQVILEHLFEIEDVR 1139
Query: 1170 VGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYL 1229
GSTARKSIPLLVD+LRPIPDRPGAPP+AV+LL+++ +GSD NKLIMAEAG LDALTKYL
Sbjct: 1140 FGSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLSRLAEGSDANKLIMAEAGALDALTKYL 1199
Query: 1230 SLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289
SLSPQDSTEA+I+EL RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARALH+L
Sbjct: 1200 SLSPQDSTEASISELLRILFSNPDLIRYEASFSSLNQLIAVLRLGSRDARFSAARALHEL 1259
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLL 1349
FDAE+I+DS+LA QAV PL+DML+AASE E E AL AL+KL SG+ SK L D++GN L
Sbjct: 1260 FDAESIRDSELAWQAVQPLIDMLNAASESEQEAALFALIKLISGHNSKRTLFVDVEGNPL 1319
Query: 1350 ESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESA 1409
ESLYKILSS SSLELKRNAAELC I+F NAK +NPIASECIQPLISL+QSD + VVES
Sbjct: 1320 ESLYKILSSASSLELKRNAAELCSILFSNAKFRSNPIASECIQPLISLIQSDNTAVVESV 1379
Query: 1410 VCAFERLLDDEQQVELVEGY-DVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQM 1468
VCAFERLLDDE +VEL Y ++VDLLV LVSGTN RL+E ++ ALIKLGKDR PRKL M
Sbjct: 1380 VCAFERLLDDEPKVELAAAYANIVDLLVGLVSGTNLRLIEGSISALIKLGKDRAPRKLDM 1439
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS 1528
VKAGIID CL LLP+ PS+LCS IAELFRILTNS AIARSSDAAK+VEPLFMVLL+PDF
Sbjct: 1440 VKAGIIDKCLVLLPIVPSSLCSAIAELFRILTNSGAIARSSDAAKVVEPLFMVLLRPDFG 1499
Query: 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
LWGQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQ
Sbjct: 1500 LWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQ 1559
Query: 1589 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVII 1648
EHFQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKIS SWPK VADAGGIFE+AKVII
Sbjct: 1560 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISISWPKVVADAGGIFELAKVII 1619
Query: 1649 QDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708
QDDPQPP LWE+AALVLSNVLR N EYYFKVP+VVLVKMLHST ESTI VALN L++HE
Sbjct: 1620 QDDPQPPVELWETAALVLSNVLRVNAEYYFKVPMVVLVKMLHSTCESTIKVALNGLIVHE 1679
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQ 1768
RTDASSAEQMT+AGVID+LL+LLRSHQCEE SG LLEALFN+ R+R+ K SKYAIAPLSQ
Sbjct: 1680 RTDASSAEQMTEAGVIDSLLNLLRSHQCEELSGTLLEALFNHIRVREKKASKYAIAPLSQ 1739
Query: 1769 YLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
YLLDPQTRSE+ + LAALALGDLSQ EGLARAS SVSACRAL+SLLEDQ ++ M MVA+C
Sbjct: 1740 YLLDPQTRSETCRFLAALALGDLSQQEGLARASDSVSACRALVSLLEDQPSEAMTMVAVC 1799
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNE 1888
ALQNFVM SRTNRRAVAEAGGILVVQELLLS +A+VAGQAA+L + LFSNHTLQEYVSNE
Sbjct: 1800 ALQNFVMHSRTNRRAVAEAGGILVVQELLLSPSADVAGQAAMLIELLFSNHTLQEYVSNE 1859
Query: 1889 LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEA 1948
LIRSLTAALERELWSTATIN + LRTL+VIF NFPKLH SEAATLCIPHLV ALKSGSEA
Sbjct: 1860 LIRSLTAALERELWSTATINVQFLRTLNVIFANFPKLHVSEAATLCIPHLVNALKSGSEA 1919
Query: 1949 AQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
AQ SVLDTLCLL+ SWSTM ID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD LLHCL
Sbjct: 1920 AQESVLDTLCLLKQSWSTMSIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADLLLHCL 1979
Query: 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP 2068
PG LTVTI RGNNLKQ MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP
Sbjct: 1980 PGSLTVTINRGNNLKQAMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP 2039
Query: 2069 KGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128
KGQKLHIICKSKNTFGK+TLG+VTIQIDKVV+EGVYSGLF+LNHD+NKD SSRTLEIEI+
Sbjct: 2040 KGQKLHIICKSKNTFGKNTLGRVTIQIDKVVSEGVYSGLFSLNHDSNKDGSSRTLEIEIV 2099
Query: 2129 WSNRISD 2135
W+NR S+
Sbjct: 2100 WTNRTSE 2106
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558634|ref|XP_002520342.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223540561|gb|EEF42128.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3392 bits (8796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1708/2114 (80%), Positives = 1889/2114 (89%), Gaps = 27/2114 (1%)
Query: 25 SNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQ 84
SNGT DDPE+T++TVA+F+E+LHA +SSP E+ELIT R+ ++AKA KEAR +IGSH Q
Sbjct: 6 SNGTPEKDDPENTVATVARFVEKLHAKISSPHEKELITARLQSLAKANKEARTVIGSHVQ 65
Query: 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
AMPLFISILRSGTP AKV VA LSVLCK++DLRLKVLLGGCIPPLLSLLKSE+ D RKA
Sbjct: 66 AMPLFISILRSGTPGAKVYVAGILSVLCKEDDLRLKVLLGGCIPPLLSLLKSEAIDARKA 125
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AAEA+YEVSSGGLSDDHVG+KIFVTEGVVPTLWDQLNP+N QD VV+GFVTGALRNLCGD
Sbjct: 126 AAEAIYEVSSGGLSDDHVGIKIFVTEGVVPTLWDQLNPQNNQDKVVEGFVTGALRNLCGD 185
Query: 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALV 264
KD YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF DSIP VIDSGA+KAL+
Sbjct: 186 KDDYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAIKALL 245
Query: 265 QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQ 324
QLVGQNNDISVRASAADALE LSS+SIKAKKAVV A+GV VLIGA+V+PSKECMQG+ Q
Sbjct: 246 QLVGQNNDISVRASAADALEILSSRSIKAKKAVVDANGVHVLIGAVVSPSKECMQGESAQ 305
Query: 325 ALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384
ALQGH+TRALANI GGM AL++YLGELS SPRLA P+ADIIGALAYALMVFEQ G+D+E
Sbjct: 306 ALQGHSTRALANICGGMSALILYLGELSHSPRLAEPIADIIGALAYALMVFEQDRGIDEE 365
Query: 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA 444
FDA IE+ILV LLKP D KL+QER+LEAMASLYGN+ LS+ ++HAEAKKVLIGLITMA
Sbjct: 366 NFDATNIENILVKLLKPRDTKLIQERILEAMASLYGNVHLSRSLNHAEAKKVLIGLITMA 425
Query: 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504
AD +E LI+ LT LCR VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL+AILT+Q
Sbjct: 426 VADAKESLIIYLTNLCRDGVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLLAILTDQ 485
Query: 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564
VDDSKWAITAAGGIPPLVQLLE GSQ+ARE AAHVLW LCCHSEDIRACVESAGAVPA L
Sbjct: 486 VDDSKWAITAAGGIPPLVQLLETGSQRAREDAAHVLWNLCCHSEDIRACVESAGAVPALL 545
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
WLL+SG KGQ+AS AL L+R ADSATINQLLALLLGDS SKA++I+VLGHVLTM
Sbjct: 546 WLLRSGELKGQEASVKALKTLVRTADSATINQLLALLLGDSSGSKAYIIRVLGHVLTMTP 605
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684
+DLV +GSAANK L+SL+QVLNSSNEE QEYAAS+LADLFS RQDIC SLATDEI++PC
Sbjct: 606 LKDLVHRGSAANKALKSLIQVLNSSNEETQEYAASILADLFSTRQDICDSLATDEILHPC 665
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
M+LLT +NTQ+VATQ ARAL ALSR TKTKTTNKM YIAEGDVKPLIKLAKTSSIDAAET
Sbjct: 666 MKLLTGNNTQVVATQLARALSALSRSTKTKTTNKMPYIAEGDVKPLIKLAKTSSIDAAET 725
Query: 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLK 803
AVAALAN+LSDP IAAE L EDVV+ALTRVL EGTSEGKKNASRALHQLLKHFPVGDVLK
Sbjct: 726 AVAALANILSDPQIAAEALAEDVVTALTRVLGEGTSEGKKNASRALHQLLKHFPVGDVLK 785
Query: 804 GNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSI 863
GNAQCRF VL ++DSLNAMDM+G D DALEVVALLARTKQG + YPPWAALAEVPSS+
Sbjct: 786 GNAQCRFTVLAILDSLNAMDMHGIDTVDALEVVALLARTKQGASVAYPPWAALAEVPSSL 845
Query: 864 EPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVR 923
E LV CLAEG P LQDKAIEILSRLCG+QPAVLGD L+AR+ SIG+LA+RIM+SS+LEVR
Sbjct: 846 ESLVYCLAEGAPLLQDKAIEILSRLCGEQPAVLGDLLIARARSIGSLANRIMNSSTLEVR 905
Query: 924 VGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYME 983
+GG ALLICAAKEHK+QSM+ALDLSGYLKPLIYALVDM+KQNS SL+IEVR PRG+++
Sbjct: 906 IGGTALLICAAKEHKQQSMEALDLSGYLKPLIYALVDMIKQNSGSLSLEIEVRAPRGFLK 965
Query: 984 RTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTS 1043
R +F+E D+FDV DPAT+LGGT+ALWLL IISSF + + VMEAG LEA S KL+SYTS
Sbjct: 966 RPSFEEGDEFDVLDPATLLGGTIALWLLSIISSFHAKHKLIVMEAGGLEAFSSKLSSYTS 1025
Query: 1044 NPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAM 1103
N QA++EDTEGIWISALFLAILFQDA IVLSP TMRIIP+LA LLRSDE+IDRFFAAQAM
Sbjct: 1026 NTQADYEDTEGIWISALFLAILFQDATIVLSPTTMRIIPSLAHLLRSDEMIDRFFAAQAM 1085
Query: 1104 ASLVCSGSKGIILAIANSGAVAGLITLIGHI-ESDTPNLVALSEEFFLVRYPDEVVLEKL 1162
ASLVC+GSKGIIL IANSGAVAGLITLIG+ +S +P R PD
Sbjct: 1086 ASLVCNGSKGIILTIANSGAVAGLITLIGYXXKSLSP------------RNPD------- 1126
Query: 1163 FEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGL 1222
VR GSTARKSIPLLVD+LRPIPDRP APP+AV+LLT+I +GSDTNKLIMAEAG L
Sbjct: 1127 -----VRAGSTARKSIPLLVDLLRPIPDRPDAPPIAVQLLTRIANGSDTNKLIMAEAGAL 1181
Query: 1223 DALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSA 1282
DALTKYLSLSP+DSTEA+I+ELFRILFSN ++IRY+A LSSLNQLIAVLHLGSR ARLSA
Sbjct: 1182 DALTKYLSLSPKDSTEASISELFRILFSNSEIIRYDACLSSLNQLIAVLHLGSRDARLSA 1241
Query: 1283 ARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLT 1342
ARAL +LF A++I+DS+LA QA PPL+DML+A SE E E ALVAL+KLTS N KA L T
Sbjct: 1242 ARALRELFKADHIRDSELAWQAFPPLIDMLNAISESEQEAALVALIKLTSENALKAALFT 1301
Query: 1343 DIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
+++G+ LE+LYKILSS SSL+LKR+AA+LCFI+F NAK ANPIA C+QPLISLMQS+
Sbjct: 1302 ELEGDPLETLYKILSSASSLDLKRDAAQLCFILFTNAKFRANPIALGCMQPLISLMQSNT 1361
Query: 1403 SIVVESAVCAFERLLDDEQQVELVEGYDV-VDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
S VVE+ VCAFERLLDDEQ E GYD+ VDLLV LV GTN+RL+E ++ ALIKLGKDR
Sbjct: 1362 SSVVEAGVCAFERLLDDEQLAEHAAGYDILVDLLVGLVCGTNYRLIEGSISALIKLGKDR 1421
Query: 1462 TPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMV 1521
RKL+MVKAG+ID CL LLPVAPS+LCS IAELFRILTNS AIARSSDAA IVEPLFMV
Sbjct: 1422 AQRKLEMVKAGVIDRCLLLLPVAPSSLCSAIAELFRILTNSGAIARSSDAANIVEPLFMV 1481
Query: 1522 LLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTEL 1581
LL+PDF LWGQHSALQALVNILEKPQSL+TLKLTPSQVIEPL++FLESPS AIQQLGTEL
Sbjct: 1482 LLRPDFGLWGQHSALQALVNILEKPQSLLTLKLTPSQVIEPLITFLESPSQAIQQLGTEL 1541
Query: 1582 LTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIF 1641
L+HLLAQEHFQQDITTKNAV+PLV+LAGIGILNLQQTA+KALEKISTSWPK VADAGGIF
Sbjct: 1542 LSHLLAQEHFQQDITTKNAVMPLVRLAGIGILNLQQTAIKALEKISTSWPKVVADAGGIF 1601
Query: 1642 EIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVAL 1701
E+AKVIIQDDPQPP LWE+AALVLSNVLRFNTEYYFKVP+VVLVKMLHS L+ST +AL
Sbjct: 1602 ELAKVIIQDDPQPPLELWETAALVLSNVLRFNTEYYFKVPLVVLVKMLHSALDSTTRLAL 1661
Query: 1702 NALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKY 1761
AL++HE TDASSAEQM +AG +DALLDLLRSHQCEE SGRLLEALFN+ R+R+MKVSKY
Sbjct: 1662 KALIVHEATDASSAEQMAEAGAVDALLDLLRSHQCEELSGRLLEALFNHVRVREMKVSKY 1721
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDE 1821
AIAPLSQYLLDPQT SE+ +LLAALA+GDLSQ EGLARAS SVSACRAL+SLLEDQ ++E
Sbjct: 1722 AIAPLSQYLLDPQTGSETCRLLAALAIGDLSQQEGLARASDSVSACRALVSLLEDQPSEE 1781
Query: 1822 MKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTL 1881
M MVA+CALQNFVM SRTNRRAVAEAGGIL+VQELLLS +A+VAGQAA+L +FLFSNHTL
Sbjct: 1782 MTMVAVCALQNFVMHSRTNRRAVAEAGGILIVQELLLSPSADVAGQAAMLIRFLFSNHTL 1841
Query: 1882 QEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGA 1941
QEYVSNELIRSLTAALERELWSTATIN +VLRTL+VIF NFPKLH SEAATLCIP L+ A
Sbjct: 1842 QEYVSNELIRSLTAALERELWSTATINIQVLRTLNVIFTNFPKLHVSEAATLCIPCLINA 1901
Query: 1942 LKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERA 2001
LKSGSEAAQ SVLDTLCLL+ SWS M I++AKSQAM+AAEAIPILQ LMKTCPPSFHERA
Sbjct: 1902 LKSGSEAAQESVLDTLCLLKQSWSAMSIEIAKSQAMVAAEAIPILQTLMKTCPPSFHERA 1961
Query: 2002 DSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFT 2061
D LLHCLPGCLTVTIKRGNNLKQTMG TNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFT
Sbjct: 1962 DLLLHCLPGCLTVTIKRGNNLKQTMGNTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFT 2021
Query: 2062 WAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121
WAFDVPPKGQKLHIICKSKNTFGKSTLG+VTIQIDKVVTEGVYSGLF+LNHDNNKD SSR
Sbjct: 2022 WAFDVPPKGQKLHIICKSKNTFGKSTLGRVTIQIDKVVTEGVYSGLFSLNHDNNKDGSSR 2081
Query: 2122 TLEIEIIWSNRISD 2135
TLEIEIIW+NR ++
Sbjct: 2082 TLEIEIIWTNRTAE 2095
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449757|ref|XP_004142631.1| PREDICTED: uncharacterized protein LOC101220047 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3330 bits (8633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1650/2108 (78%), Positives = 1872/2108 (88%), Gaps = 3/2108 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPE+TM+TVA+ +EQLHA+MSS QE+ELIT R+L IAK +K+AR LIGSH+QAMPLFI
Sbjct: 1 MDDPETTMATVAQLIEQLHASMSSSQEKELITARLLGIAKTQKDARTLIGSHSQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++LR+G+ +AKVNVA TLSVLCKD++LRLKVLLGGCIPPLLSLLKSES + KAAAEA+Y
Sbjct: 61 NVLRTGSAVAKVNVARTLSVLCKDDELRLKVLLGGCIPPLLSLLKSESIEASKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSS GL +D VGMKIFVTEGV+PTLW+QLNP N+QD VV+GFVTG+LRNLCGDKDGYW+
Sbjct: 121 EVSSSGLLNDRVGMKIFVTEGVIPTLWNQLNPNNRQDKVVEGFVTGSLRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIV LLSSD+A QSNAASLLARLMLAF DSI VI+SGAVKAL+ LV +
Sbjct: 181 ATLEAGGVDIIVDLLSSDSATVQSNAASLLARLMLAFSDSIAKVIESGAVKALLGLVSKK 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS AKKA+V +G+PVLI A+VAPSKECMQG+ GQ+LQ HA
Sbjct: 241 NDISVRASAADALEALSSKSTGAKKAIVDEEGIPVLIRAVVAPSKECMQGKHGQSLQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALAN+ GGM AL++YLGELSQSPR APVADI+GALAY LMVFE+ +D++PF+A +
Sbjct: 301 TRALANLCGGMSALILYLGELSQSPRHYAPVADIVGALAYTLMVFEK--SIDEDPFNATK 358
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKPHDNKLVQERVLEAMASLYGN++ S+ ++HAEAKKVLIGL+T A DV+E
Sbjct: 359 IEDILVTLLKPHDNKLVQERVLEAMASLYGNVYFSECLNHAEAKKVLIGLVTTAATDVQE 418
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLI SLT LC VGIWEAIGKREG+QLLISLLGLSSEQHQEYAVQL+ ILT+QVDDSKW
Sbjct: 419 YLIPSLTSLCCNGVGIWEAIGKREGVQLLISLLGLSSEQHQEYAVQLLEILTDQVDDSKW 478
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GS KARE AAH+LW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 479 AITAAGGIPPLVQLLETGSHKAREDAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKSG 538
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G +GQ+ASAMAL+KL++ ADSATINQLLA+LLGDSP KA++I+VLGHVLTMA ED V
Sbjct: 539 GSRGQEASAMALSKLVQTADSATINQLLAMLLGDSPKEKANIIQVLGHVLTMASYEDFVH 598
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+ SAANKGLR+LVQVLNSSNEE Q +AASVLADLFS R DI SLATDEIV+PCM+LL S
Sbjct: 599 RDSAANKGLRTLVQVLNSSNEETQAHAASVLADLFSSRPDISDSLATDEIVHPCMKLLAS 658
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NTQ VATQSARAL ALSRP+KTK NKM +IAEGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 659 NTQ-VATQSARALAALSRPSKTKAMNKMRHIAEGDVKPLIKLAKTSSVDAAETAVAALAN 717
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSD IAAE L EDVVSALTRVL EGT GKK+A++ALHQLL HF G+V AQCRF
Sbjct: 718 LLSDSQIAAEALAEDVVSALTRVLGEGTPVGKKSAAQALHQLLNHFQPGEVFASEAQCRF 777
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
+VL LVDSL +MD++G +V DALEV++LL TK G + TY PW+ALAE PSS+EPLV CL
Sbjct: 778 IVLALVDSLRSMDLDGNNVVDALEVISLLFITKVGASLTYAPWSALAEDPSSLEPLVYCL 837
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGP PLQD+ IEILSRLCGDQP VLGD L+ARS S+ +LA +I+ SS+ EV+ GGAALL
Sbjct: 838 AEGPSPLQDRVIEILSRLCGDQPVVLGDLLVARSKSLDSLASKIIKSSNPEVKSGGAALL 897
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICA KEHK+QS+ ALD G LK LI+ALV ++KQNS+ SS DIEVRT RG+++R+ F +
Sbjct: 898 ICAMKEHKQQSVGALDSFGCLKLLIHALVGLIKQNSTYSSPDIEVRTHRGFIKRSTFLDG 957
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D FD D AT++GGT+ALWLL II+SF N V V++AG LEALSDKL SYT+N QA+ E
Sbjct: 958 DRFDASDSATVMGGTIALWLLSIIASFNVENKVAVLQAGGLEALSDKLVSYTTNSQAKLE 1017
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
D +GIWISAL LAILFQDA++ SPATM IIP+LA L RS+EV D+FFAAQA+ASLVC+G
Sbjct: 1018 DVDGIWISALLLAILFQDASVASSPATMSIIPSLAFLARSEEVNDKFFAAQAIASLVCNG 1077
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
SKG+ LAIANSGA+ GLITLIG +ESD PNLV+L++EF L + PD+VVLE LFEIE++R+
Sbjct: 1078 SKGVNLAIANSGAIVGLITLIGFLESDMPNLVSLADEFSLTQKPDQVVLEHLFEIEEIRI 1137
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARK+IPLLVD+LRP+PDRPGAPPVAV+LLT+I DG+D NKL+MAEAG +DALTKYLS
Sbjct: 1138 GSTARKTIPLLVDLLRPLPDRPGAPPVAVKLLTRIADGNDANKLMMAEAGAVDALTKYLS 1197
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I++L RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARAL +LF
Sbjct: 1198 LSPQDSTEAIISDLLRILFSNPDLIRYEASASSLNQLIAVLRLGSRSARFSAARALFELF 1257
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
D E I+DS+LA QA PLVDML+A SE E AL AL++LTSG +SK LL D++G L+
Sbjct: 1258 DCEYIRDSELAKQAFYPLVDMLNATSESEQGAALSALIRLTSGYSSKTDLLNDVEGTPLD 1317
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
SL KIL ++SSLELK NAAELCF++FGN K+ NPI SECIQPLI LMQSD S VES V
Sbjct: 1318 SLCKILITSSSLELKTNAAELCFVLFGNIKVRTNPIVSECIQPLIFLMQSDSSAAVESGV 1377
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CA ERLLDDEQQVEL YD+V+LLV LVSGTN+RL+EA++C+LIKLGKDRT K+ MVK
Sbjct: 1378 CALERLLDDEQQVELTLPYDIVNLLVSLVSGTNYRLIEASICSLIKLGKDRTQLKMDMVK 1437
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G+IDNCL+LLP APS+LCS++AELFRILTNS+AIARSSDAAKIVEPLF+VLL+PDF+LW
Sbjct: 1438 VGVIDNCLELLPDAPSSLCSSVAELFRILTNSNAIARSSDAAKIVEPLFLVLLRPDFNLW 1497
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL+TL LTPSQVIEPL+SFLESPS A+QQLGTELL+HLLAQEH
Sbjct: 1498 GQHSALQALVNILEKPQSLLTLNLTPSQVIEPLISFLESPSRAVQQLGTELLSHLLAQEH 1557
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA++ALEKISTSWPK+VADAGGIFE++KVIIQ+
Sbjct: 1558 FQQDITTKNAVVPLVQLAGIGILNLQQTAIRALEKISTSWPKSVADAGGIFELSKVIIQE 1617
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAA++LSNVLRFN +YYFKVPVVVLVKMLHST+ESTITVAL+AL+ HE
Sbjct: 1618 DPQPPHTLWESAAMILSNVLRFNAKYYFKVPVVVLVKMLHSTVESTITVALSALVNHEGN 1677
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
D SSAEQM +AG IDAL+DLLRSHQCEE SGRLLE LFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1678 DTSSAEQMAEAGAIDALVDLLRSHQCEEASGRLLETLFNNVRVREMKVSKYAIAPLSQYL 1737
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+ GKLLA LALGDLSQH G ARAS SVSACRALISLLED++T+EMKMVAICAL
Sbjct: 1738 LDPQTRSQPGKLLATLALGDLSQHAGHARASDSVSACRALISLLEDEATEEMKMVAICAL 1797
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILVVQELLLS + E++GQAALL KFLFSNHTLQEYVSNELI
Sbjct: 1798 QNFVMHSRTNRRAVAEAGGILVVQELLLSPSPEISGQAALLIKFLFSNHTLQEYVSNELI 1857
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTL+VIF NFPKLH SEAATL IPHL+GALKSG+EAAQ
Sbjct: 1858 RSLTAALERELWSTATINEEVLRTLNVIFTNFPKLHVSEAATLSIPHLIGALKSGNEAAQ 1917
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
+VLDTLCLL++SWS+MPID+AKSQAMIAAEAIPILQMLMKTCPPSFH+RADSLLHCLPG
Sbjct: 1918 ETVLDTLCLLKHSWSSMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDRADSLLHCLPG 1977
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKG 2070
CLTV IKRGNNLKQTMG+TNAFCRL+IGNGPPRQTKVVSHS SPEWKEGFTWAFDVPPKG
Sbjct: 1978 CLTVIIKRGNNLKQTMGSTNAFCRLSIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKG 2037
Query: 2071 QKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130
QKLHIICKSK+TFGKSTLG+VTIQIDKVVTEG+YSGLF+LNHD +KD SSRTLEIEIIWS
Sbjct: 2038 QKLHIICKSKSTFGKSTLGRVTIQIDKVVTEGLYSGLFSLNHDGDKDGSSRTLEIEIIWS 2097
Query: 2131 NRISDESI 2138
NRISDE +
Sbjct: 2098 NRISDEEL 2105
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500671|ref|XP_004161164.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223712 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3322 bits (8614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1648/2108 (78%), Positives = 1869/2108 (88%), Gaps = 3/2108 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPE+TM+TVA+ +EQLHA+MSS QE+ELIT R+L IAK +K+AR LIGSH+QAMPLFI
Sbjct: 1 MDDPETTMATVAQLIEQLHASMSSSQEKELITARLLGIAKTQKDARTLIGSHSQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++LR+G+ +AKVNVA TLSVLCKD++LRLKVLLGGCIPPLLSLLKSES + KAAAEA+Y
Sbjct: 61 NVLRTGSAVAKVNVARTLSVLCKDDELRLKVLLGGCIPPLLSLLKSESIEASKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSS GL +D VGMKIFVTEGV+PTLW+QLNP N+QD VV+GFVTG+LRNLCGDKDGYW+
Sbjct: 121 EVSSSGLLNDRVGMKIFVTEGVIPTLWNQLNPNNRQDKVVEGFVTGSLRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIV LLSSD+A QSNAASLLARLMLAF DSI VI+SGAVKAL+ LV +
Sbjct: 181 ATLEAGGVDIIVDLLSSDSATVQSNAASLLARLMLAFSDSIAKVIESGAVKALLGLVSKK 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS AKKA+V +G+PVLI A+VAPSKECMQG+ GQ+LQ HA
Sbjct: 241 NDISVRASAADALEALSSKSTGAKKAIVDEEGIPVLIRAVVAPSKECMQGKHGQSLQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALAN+ GGM AL++YLGELSQSPR APVADI+GALAY LMVFE+ +D++PF+A +
Sbjct: 301 TRALANLCGGMSALILYLGELSQSPRHYAPVADIVGALAYTLMVFEK--SIDEDPFNATK 358
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKPHDNKLVQERVLEAMASLYGN++ S+ ++HAEAKKVLIGL+T A DV+E
Sbjct: 359 IEDILVTLLKPHDNKLVQERVLEAMASLYGNVYFSECLNHAEAKKVLIGLVTTAATDVQE 418
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLI SLT LC VGIWEAIGKREG+QLLISLLGLSSEQHQEYAVQL+ ILT+QVDDSKW
Sbjct: 419 YLIPSLTSLCCNGVGIWEAIGKREGVQLLISLLGLSSEQHQEYAVQLLEILTDQVDDSKW 478
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GS KARE AAH+LW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 479 AITAAGGIPPLVQLLETGSHKAREDAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKSG 538
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G +GQ+ASAMAL+KL++ ADSATINQLLA+LLGDSP KA++I+VLGHVLTMA ED V
Sbjct: 539 GSRGQEASAMALSKLVQTADSATINQLLAMLLGDSPKEKANIIQVLGHVLTMASYEDFVH 598
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+ SAANKGLR+LVQVLNSSNEE Q +AASVLADLFS R DI SLATDEIV+PCM+LL S
Sbjct: 599 RDSAANKGLRTLVQVLNSSNEETQAHAASVLADLFSSRPDISDSLATDEIVHPCMKLLAS 658
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NTQ VATQSARAL ALSRP+KTK NKM +IAEGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 659 NTQ-VATQSARALAALSRPSKTKAMNKMCHIAEGDVKPLIKLAKTSSVDAAETAVAALAN 717
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSD IAAE L EDVVSALTRVL EGT GKK+A++ALHQLL HF G+V AQCRF
Sbjct: 718 LLSDSQIAAEALAEDVVSALTRVLGEGTPVGKKSAAQALHQLLNHFQPGEVFASEAQCRF 777
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
+VL LVDSL +MD++G +V DALEV++LL TK G + TY PW+ALAE PSS+EPLV CL
Sbjct: 778 IVLALVDSLRSMDLDGNNVVDALEVISLLFITKVGASLTYAPWSALAEDPSSLEPLVYCL 837
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGP PLQD+ IEILSRLCGDQP VLGD L+ARS S+ +LA +I+ SS+ EV+ GGAALL
Sbjct: 838 AEGPSPLQDRVIEILSRLCGDQPVVLGDLLVARSKSLDSLASKIIKSSNPEVKSGGAALL 897
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICA KEHK+QS+ ALD G LK LI+ALV + K NS+ SS DIEVRT RG+++R+ F +
Sbjct: 898 ICAMKEHKQQSVGALDSFGCLKLLIHALVGLXKTNSTYSSPDIEVRTHRGFIKRSTFLDG 957
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D FD D AT++GGT+ALWLL II+SF N V V++AG LEALSDKL SYT+N QA+ E
Sbjct: 958 DRFDASDSATVMGGTIALWLLSIIASFNVENKVAVLQAGGLEALSDKLVSYTTNSQAKLE 1017
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
D +GIWISAL LAILFQDA++ SPATM IIP+LA L RS+EV D+FFAAQA+ASLVC+G
Sbjct: 1018 DVDGIWISALLLAILFQDASVASSPATMSIIPSLAFLARSEEVNDKFFAAQAIASLVCNG 1077
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
SKG+ LAIANSGA+ GLITLIG +ESD PNLV+L++EF L + PD+VVLE LFEIE++R+
Sbjct: 1078 SKGVNLAIANSGAIVGLITLIGFLESDMPNLVSLADEFSLTQKPDQVVLEHLFEIEEIRI 1137
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARK+IPLLVD+LRP+PDRPGAPPVAV+LLT+I DG+D NKL+MAEAG +DALTKYLS
Sbjct: 1138 GSTARKTIPLLVDLLRPLPDRPGAPPVAVKLLTRIADGNDANKLMMAEAGAVDALTKYLS 1197
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I++L RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARAL +LF
Sbjct: 1198 LSPQDSTEAIISDLLRILFSNPDLIRYEASASSLNQLIAVLRLGSRSARFSAARALFELF 1257
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
D E I+DS+LA QA PLVDML+A SE E AL AL++LTSG +SK LL D++G L+
Sbjct: 1258 DCEYIRDSELAKQAFYPLVDMLNATSESEQGAALSALIRLTSGYSSKTDLLNDVEGTPLD 1317
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
SL KIL ++SSLELK NAAELCF++FGN K+ NPI SECIQPLI LMQSD S VES V
Sbjct: 1318 SLCKILITSSSLELKTNAAELCFVLFGNIKVRTNPIVSECIQPLIFLMQSDSSAAVESGV 1377
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CA ERLLDDEQQVEL YD+V+LLV LVSGTN+RL+EA++C+LIKLGKDRT K+ MVK
Sbjct: 1378 CALERLLDDEQQVELTLPYDIVNLLVSLVSGTNYRLIEASICSLIKLGKDRTQLKMDMVK 1437
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G+IDNCL+LLP APS+LCS++AELFRILTNS+AIARSSDAAKIVEPL +VLL+PDF+LW
Sbjct: 1438 VGVIDNCLELLPDAPSSLCSSVAELFRILTNSNAIARSSDAAKIVEPLXLVLLRPDFNLW 1497
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL+TL LTPSQVIEPL+SFLESPS A+QQLGTELL+HLLAQEH
Sbjct: 1498 GQHSALQALVNILEKPQSLLTLNLTPSQVIEPLISFLESPSRAVQQLGTELLSHLLAQEH 1557
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA++ALEKISTSWPK+VADAGGIFE++KVIIQ+
Sbjct: 1558 FQQDITTKNAVVPLVQLAGIGILNLQQTAIRALEKISTSWPKSVADAGGIFELSKVIIQE 1617
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAA++LSNVLRFN +YYFKVPVVVLVKMLHST+ESTITVAL+AL+ HE
Sbjct: 1618 DPQPPHTLWESAAMILSNVLRFNAKYYFKVPVVVLVKMLHSTVESTITVALSALVNHEGN 1677
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
D SSAEQM +AG IDAL+DLLRSHQCEE SGRLLE LFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1678 DTSSAEQMAEAGAIDALVDLLRSHQCEEASGRLLETLFNNVRVREMKVSKYAIAPLSQYL 1737
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+ GKLLA LALGDLSQH G ARAS SVSACRALISLLED++T+EMKMVAICAL
Sbjct: 1738 LDPQTRSQPGKLLATLALGDLSQHAGHARASDSVSACRALISLLEDEATEEMKMVAICAL 1797
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILVVQELLLS + E++GQAALL KFLFSNHTLQEYVSNELI
Sbjct: 1798 QNFVMHSRTNRRAVAEAGGILVVQELLLSPSPEISGQAALLIKFLFSNHTLQEYVSNELI 1857
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTL+VIF NFPKLH SEAATL IPHL+GALKSG+EAAQ
Sbjct: 1858 RSLTAALERELWSTATINEEVLRTLNVIFTNFPKLHVSEAATLSIPHLIGALKSGNEAAQ 1917
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
+VLDTLCLL++SWS+MPID+AKSQAMIAAEAIPILQMLMKTCPPSFH+RADSLLHCLPG
Sbjct: 1918 ETVLDTLCLLKHSWSSMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDRADSLLHCLPG 1977
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKG 2070
CLTV IKRGNNLKQTMG+TNAFCRL+IGNGPPRQTKVVSHS SPEWKEGFTWAFDVPPKG
Sbjct: 1978 CLTVIIKRGNNLKQTMGSTNAFCRLSIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKG 2037
Query: 2071 QKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130
QKLHIICKSK+TFGKSTLG+VTIQIDKVVTEG+YSGLF+LNHD +KD SSRTLEIEIIWS
Sbjct: 2038 QKLHIICKSKSTFGKSTLGRVTIQIDKVVTEGLYSGLFSLNHDGDKDGSSRTLEIEIIWS 2097
Query: 2131 NRISDESI 2138
NRISDE +
Sbjct: 2098 NRISDEEL 2105
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141793|emb|CBI18996.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3241 bits (8402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1625/1962 (82%), Positives = 1774/1962 (90%), Gaps = 51/1962 (2%)
Query: 178 DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237
+ L KNKQD VV+GFVTGALRNLCGDK+GYW+ATLEAGGVDIIVGLL SDNAAAQSNAA
Sbjct: 115 EDLRLKNKQDKVVEGFVTGALRNLCGDKNGYWKATLEAGGVDIIVGLLYSDNAAAQSNAA 174
Query: 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAV 297
SLLARLMLAF DSIP VIDSGAVKAL++L+GQ NDISVRASAADALEALSSKS +AKKAV
Sbjct: 175 SLLARLMLAFSDSIPKVIDSGAVKALLRLLGQENDISVRASAADALEALSSKSTRAKKAV 234
Query: 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357
V ADGVPVLIGAIVAPSKECMQG+ GQALQGHATRALANI GGM AL++YLGELSQSPRL
Sbjct: 235 VDADGVPVLIGAIVAPSKECMQGECGQALQGHATRALANICGGMSALIMYLGELSQSPRL 294
Query: 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417
AAPVADIIGALAY+LMVFEQ+SGV++EPFD QIEDILVMLLKP DNKLVQERVLEA+AS
Sbjct: 295 AAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQIEDILVMLLKPRDNKLVQERVLEALAS 354
Query: 418 LYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ 477
LY N +LS+W++HAEAKKVLI LITMA AD +EYLIL+LT LC VG+WEAIG REGIQ
Sbjct: 355 LYSNKYLSRWINHAEAKKVLIALITMAAADAQEYLILALTSLCCDGVGLWEAIGMREGIQ 414
Query: 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAA 537
LLISLLGLSSEQHQEYAVQL+AILT+QVDDSKWAITAAGGIPPLVQLLE GSQKARE AA
Sbjct: 415 LLISLLGLSSEQHQEYAVQLLAILTDQVDDSKWAITAAGGIPPLVQLLEIGSQKAREDAA 474
Query: 538 HVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQL 597
HVLW LCCHSEDIRACVESAGAVPAFLWLLKSGG KGQ+ASAMAL KL+R ADSATINQL
Sbjct: 475 HVLWNLCCHSEDIRACVESAGAVPAFLWLLKSGGLKGQEASAMALGKLVRTADSATINQL 534
Query: 598 LALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYA 657
LALLLGDSPSSKAH+I+VLGHVLTMA EDLV KGSAANKGL SLVQVLNSSNEE QEYA
Sbjct: 535 LALLLGDSPSSKAHIIRVLGHVLTMASHEDLVHKGSAANKGLTSLVQVLNSSNEETQEYA 594
Query: 658 ASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717
ASVLADLFS RQDIC SLATDEIV+PCM+LLTS TQ++ATQSARALGALSRPTK K TNK
Sbjct: 595 ASVLADLFSTRQDICDSLATDEIVHPCMKLLTSKTQVIATQSARALGALSRPTKAKATNK 654
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777
MSYIAEGDVKPLIKLAKTSSIDAAETA
Sbjct: 655 MSYIAEGDVKPLIKLAKTSSIDAAETA--------------------------------- 681
Query: 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVA 837
HFPVGDVL GNAQCRF VL LVDSLN+MD++GTD ADALEVVA
Sbjct: 682 -----------------HFPVGDVLTGNAQCRFAVLALVDSLNSMDLDGTDAADALEVVA 724
Query: 838 LLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLG 897
LLAR KQ +NFTY PW+ALAEVPSS+E LV CLAEGPP +QDKAIEILSRLCGDQP VLG
Sbjct: 725 LLARMKQSVNFTYSPWSALAEVPSSLESLVRCLAEGPPLVQDKAIEILSRLCGDQPVVLG 784
Query: 898 DFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYA 957
D L+A+S SIG+LA+RIM+SSSLEVRVGG ALLICAAKEHK+ +MDALD+SGYL+PLIYA
Sbjct: 785 DLLVAQSRSIGSLANRIMNSSSLEVRVGGTALLICAAKEHKQAAMDALDVSGYLRPLIYA 844
Query: 958 LVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017
LVDMMKQNSSCSSL+IEVRTPRG+MERTAFQE +F+VPDPAT+LGGTVALWL+ II SF
Sbjct: 845 LVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEGIEFEVPDPATVLGGTVALWLISIICSF 904
Query: 1018 LRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPAT 1077
+ +TVMEAG LEALS+KL SY SNPQAEFEDTEGIWISAL LAILFQDAN+VL+PAT
Sbjct: 905 HAKSKITVMEAGGLEALSEKLTSYASNPQAEFEDTEGIWISALLLAILFQDANVVLAPAT 964
Query: 1078 MRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESD 1137
MRIIP+LALL++SDEVIDRFFAAQAMASLVC+GS+GI L IANSGAVAGLITLIG+IE D
Sbjct: 965 MRIIPSLALLMKSDEVIDRFFAAQAMASLVCNGSRGINLTIANSGAVAGLITLIGYIELD 1024
Query: 1138 TPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV 1197
PNLVALSEEF LVR PD+VVLE LFEIED+RVGSTARKSIPLLVD+LRPIPDRPGAPP+
Sbjct: 1025 MPNLVALSEEFCLVRKPDQVVLENLFEIEDIRVGSTARKSIPLLVDLLRPIPDRPGAPPI 1084
Query: 1198 AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY 1257
AV+LLT+I DGSDTNKLIMAEAG LDALTKYLSLSPQDS+EA+++EL RILFSNPDL+RY
Sbjct: 1085 AVQLLTRIADGSDTNKLIMAEAGALDALTKYLSLSPQDSSEASVSELLRILFSNPDLLRY 1144
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASE 1317
EAS+SSLNQLIAVL LGSR AR SAARALH+LFDAENI+DS+LA QAV PLVDML+AASE
Sbjct: 1145 EASISSLNQLIAVLRLGSRNARFSAARALHELFDAENIRDSELARQAVQPLVDMLNAASE 1204
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL-KRNAAELCFIMF 1376
E + ALVAL+KLT GN+SKA L+TD++GN LESLYKILSS++S K NAA+LCF++F
Sbjct: 1205 SEQQAALVALIKLTMGNSSKASLMTDVEGNPLESLYKILSSSTSSLELKGNAAQLCFVLF 1264
Query: 1377 GNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLV 1436
KI A P+ASECI+PLI LMQS+ S VES+VCAFERLLDDEQ VEL YD+VDL+V
Sbjct: 1265 NIPKIRALPMASECIEPLILLMQSESSTAVESSVCAFERLLDDEQLVELAAAYDIVDLIV 1324
Query: 1437 RLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELF 1496
LVSG+NH+L+E ++CAL KLGKDRTP KL MVKAGIIDNCL+LLPVAPS+LCS+IAELF
Sbjct: 1325 SLVSGSNHQLIETSICALTKLGKDRTPLKLDMVKAGIIDNCLELLPVAPSSLCSSIAELF 1384
Query: 1497 RILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTP 1556
RILTNSSAI++ S AA+IVEPLFMVLL+PDFS+WGQHSALQALVNILEKPQSL TLKLTP
Sbjct: 1385 RILTNSSAISKGSAAARIVEPLFMVLLRPDFSMWGQHSALQALVNILEKPQSLATLKLTP 1444
Query: 1557 SQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ 1616
SQVIEPL+SFLESPS AIQQLGTELL+HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ
Sbjct: 1445 SQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ 1504
Query: 1617 QTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEY 1676
QTA+KALE IS SWPKAVADAGGIFE+AKVIIQDDPQPPH+LWESAALVLSNVLRFN EY
Sbjct: 1505 QTAIKALENISISWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRFNAEY 1564
Query: 1677 YFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQC 1736
YFKVP+VVLVKMLHSTLESTITVALNAL++HER+D+S+AEQMT+AG IDALLDLLRSHQC
Sbjct: 1565 YFKVPLVVLVKMLHSTLESTITVALNALIVHERSDSSNAEQMTEAGAIDALLDLLRSHQC 1624
Query: 1737 EETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG 1796
EE +GRLLEALFNN R+R+MKVSKYAIAPLSQYLLDPQTRS+SG+LLAALALGDLSQHEG
Sbjct: 1625 EEPAGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGRLLAALALGDLSQHEG 1684
Query: 1797 LARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQEL 1856
LARAS SVSACRALISLLEDQ T+EMKMVAICALQNFVM SRTNRRAVAEAGGILVVQEL
Sbjct: 1685 LARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMRSRTNRRAVAEAGGILVVQEL 1744
Query: 1857 LLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLH 1916
LLS N++VA QAALL KFLFSNHTLQEYVSNELIRSLTAALE+ELWSTATINEEVLRT++
Sbjct: 1745 LLSPNSDVAAQAALLIKFLFSNHTLQEYVSNELIRSLTAALEKELWSTATINEEVLRTIN 1804
Query: 1917 VIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQA 1976
VIF NF KLH SEAATLCIPHLVGALKSGS+AAQ SVLDTLCLL++SWSTMPID+AKSQA
Sbjct: 1805 VIFANFHKLHISEAATLCIPHLVGALKSGSDAAQESVLDTLCLLKHSWSTMPIDIAKSQA 1864
Query: 1977 MIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLT 2036
MIAAEAIPILQMLMKTCPPSFH++ADSLLHCLPGCLTVTIKRGNNLKQ MG TNAFCRLT
Sbjct: 1865 MIAAEAIPILQMLMKTCPPSFHDKADSLLHCLPGCLTVTIKRGNNLKQAMGGTNAFCRLT 1924
Query: 2037 IGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQID 2096
IGNGPPRQTKVVSHS SPEWKEGFTWAFDVPPKGQKLHI+CKSK+TFGK+ LG+VTIQID
Sbjct: 1925 IGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKGQKLHILCKSKSTFGKTNLGRVTIQID 1984
Query: 2097 KVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRISDESI 2138
KVVTEGVYSGLF+LNHD+NKD SSRTLEIEIIWSNRIS+ES+
Sbjct: 1985 KVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIWSNRISNESM 2026
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839607|ref|XP_002887685.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333526|gb|EFH63944.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2996 bits (7767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1484/2122 (69%), Positives = 1763/2122 (83%), Gaps = 2/2122 (0%)
Query: 17 SSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEAR 76
SS+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T R+L IAK K+EAR
Sbjct: 14 SSSLQSGKVHAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTTARLLGIAKGKREAR 73
Query: 77 LLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS 136
LIGS+ QAMPLFIS+LR+GT +AKVNVA+ L VLCKD DLRLKVLLGGCIPPLLS+LKS
Sbjct: 74 RLIGSYGQAMPLFISMLRNGTSMAKVNVASILCVLCKDNDLRLKVLLGGCIPPLLSVLKS 133
Query: 137 ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196
+ +TRKAAAEA+ EVSS G+S+DH+GMKIF+TEGVVPTLWDQL+ K Q+ VV+G+VTG
Sbjct: 134 GTIETRKAAAEAICEVSSAGISNDHIGMKIFITEGVVPTLWDQLSLKGNQEKVVEGYVTG 193
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
ALRNLCG D YWR TLE GVDI+V LLSSDN +Q+NAASLLARL+L+F DSI +++
Sbjct: 194 ALRNLCGVDDSYWRLTLEGSGVDIVVSLLSSDNPHSQANAASLLARLVLSFCDSIQKILN 253
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
SG VK+L+QL+ Q NDI+VRASAADALEALSSKS +AKK V A GV LI AIVAPSKE
Sbjct: 254 SGVVKSLIQLLEQKNDINVRASAADALEALSSKSDEAKKCVKEAGGVHALIEAIVAPSKE 313
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376
CMQG+ GQ+LQ HAT ALAN++GGM L++YLGE+SQSPRL P+ D+IGALAYALM+F+
Sbjct: 314 CMQGKHGQSLQEHATGALANVFGGMRHLIIYLGEVSQSPRLTEPIGDVIGALAYALMIFK 373
Query: 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436
Q ++ F E ILV LLKP D KL+QER+LEAMASLYGN LS ++ AEAK+V
Sbjct: 374 QPES-SEKIFYPSVTESILVKLLKPRDTKLIQERILEAMASLYGNSSLSCYLDDAEAKRV 432
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
LI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKREGIQL IS LGLSSEQHQEYAV+
Sbjct: 433 LIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISFLGLSSEQHQEYAVE 492
Query: 497 LIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556
++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW LCCHSE+IR CVE
Sbjct: 493 MLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDCVER 552
Query: 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL 616
AG +PAFLWLLK+GGP QD SA L KL+ AD AT+NQLLALLLGD P+SK HVIKVL
Sbjct: 553 AGGIPAFLWLLKTGGPNSQDTSAKTLVKLVHTADPATVNQLLALLLGDDPTSKIHVIKVL 612
Query: 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676
GHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLADLFS RQDICG LA
Sbjct: 613 GHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLADLFSSRQDICGHLA 672
Query: 677 TDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736
TD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIAEGD+K LIKLAK S
Sbjct: 673 TDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKKNNNKKKSYIAEGDIKSLIKLAKNS 732
Query: 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796
SI++AE AV+ALANLLSDPDIAAE L EDVVSA TR+LA+G+ EGK+NASRALHQLLK+F
Sbjct: 733 SIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGKRNASRALHQLLKNF 792
Query: 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856
PV DVLKG+AQCRF +L+LVDSL ++D++ D + LEVVALLA+TK G+NF+YPPW AL
Sbjct: 793 PVCDVLKGSAQCRFAILSLVDSLKSIDVDSPDAFNILEVVALLAKTKSGVNFSYPPWTAL 852
Query: 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMH 916
AEVPSS+E LV CL EG +QDKAIE+LSRLC DQ +L + +++R S+G LADRI++
Sbjct: 853 AEVPSSLETLVQCLTEGHTLVQDKAIEVLSRLCSDQQFLLSELIVSRPKSMGVLADRIVN 912
Query: 917 SSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVR 976
+SSLEVRVGG ALL+CAAKE K+ + LD SG+ K L++ALVDM+K NS+C SL+ EV+
Sbjct: 913 ASSLEVRVGGTALLLCAAKEKKQLITETLDQSGFSKLLLHALVDMIKHNSTCFSLETEVQ 972
Query: 977 TPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSD 1036
TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S + V VMEAG LE L
Sbjct: 973 TPKGFLEKKVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSKVIVMEAGGLEVLLG 1032
Query: 1037 KLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDR 1096
KLA YTS+PQAEFED+EGIWISAL LAI+FQD N+ S TMRIIP LA+LL SDE++DR
Sbjct: 1033 KLARYTSSPQAEFEDSEGIWISALLLAIMFQDDNVSFSSTTMRIIPTLAVLLGSDELVDR 1092
Query: 1097 FFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDE 1156
+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ESD NLVAL+ EF LV+ PD+
Sbjct: 1093 YFAAHAMASLVCTRNRGIDLTIANSGAVSGIINLLGYVESDILNLVALANEFSLVKEPDQ 1152
Query: 1157 VVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIM 1216
V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L +I DGSDTNKL+M
Sbjct: 1153 VILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQILIRIADGSDTNKLLM 1212
Query: 1217 AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR 1276
AEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LSSLNQLIAVL LGSR
Sbjct: 1213 AEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALSSLNQLIAVLRLGSR 1272
Query: 1277 GARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTS 1336
AR SAA AL++LF+AENI++S++A QAV PL+D+ SE E EVAL AL+KL+SGNTS
Sbjct: 1273 SARYSAAGALNELFEAENIRNSEIACQAVQPLMDIFGTVSESEQEVALSALIKLSSGNTS 1332
Query: 1337 KACLLTDIDGNLLESLYKILSSNS-SLELKRNAAELCFIMFGNAKIIANPIASECIQPLI 1395
LL D++G+LLE++ KILSS S S ELK NAA LC ++F N I +P AS C++PLI
Sbjct: 1333 NTALLIDVEGSLLENVIKILSSASASEELKINAARLCSVVFLNKNIRTSPSASGCMKPLI 1392
Query: 1396 SLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALI 1455
+LMQS+ S VE+A+CA + LLDDEQ +EL +++ +LLV LVSG N+ ++EA++ ALI
Sbjct: 1393 TLMQSERSAAVEAAICAIKILLDDEQHLELAAAHNIQELLVGLVSGRNYVIIEASLSALI 1452
Query: 1456 KLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIV 1515
KLGKDR PRKL MV+AGII+ CL+LLP A S+LCS +AEL RILTNS IAR D AK V
Sbjct: 1453 KLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVAELLRILTNSGVIARRPDVAKTV 1512
Query: 1516 EPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQ 1575
EPLF VLL+ D +LWGQHSALQALVNILEK QSL TPS+ I PL+SFLES S AIQ
Sbjct: 1513 EPLFAVLLRSDLTLWGQHSALQALVNILEKQQSLEAFSFTPSEAIVPLISFLESSSQAIQ 1572
Query: 1576 QLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVA 1635
QLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+KALEKIS SWPKAV
Sbjct: 1573 QLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIKALEKISASWPKAVL 1632
Query: 1636 DAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLES 1695
DAGGIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V + VLVK+L ST+E
Sbjct: 1633 DAGGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVELPVLVKLLFSTIEG 1692
Query: 1696 TITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQ 1755
T+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG LLE +FNN R+R+
Sbjct: 1693 TVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESGSLLEVIFNNPRVRE 1752
Query: 1756 MKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLE 1815
+K+ KYAIAPLSQYLLDPQTRSE G+LLAALALGDLSQHEGL+R+S SVSACRALIS+LE
Sbjct: 1753 LKLCKYAIAPLSQYLLDPQTRSEPGRLLAALALGDLSQHEGLSRSSGSVSACRALISVLE 1812
Query: 1816 DQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL 1875
+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS NAEV+GQAAL+ KFL
Sbjct: 1813 EQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCNAEVSGQAALMVKFL 1872
Query: 1876 FSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCI 1935
FSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF NFPKL SEAAT CI
Sbjct: 1873 FSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSNFPKLRASEAATFCI 1932
Query: 1936 PHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPP 1995
PHLVGALKSG E QG VLD L LLR+SW+ M +DVAKSQAMIAAEAIP+LQMLMKTCPP
Sbjct: 1933 PHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSLDVAKSQAMIAAEAIPVLQMLMKTCPP 1992
Query: 1996 SFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPE 2055
FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN PPRQTKVVS+S +PE
Sbjct: 1993 RFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCPPRQTKVVSNSTTPE 2052
Query: 2056 WKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNN 2115
WKEGFTWAFDVPPKGQKLHIICKSK+TFGK+TLG+VTIQIDKVVTEG YSG +LNH+N+
Sbjct: 2053 WKEGFTWAFDVPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTEGEYSGSLSLNHENS 2112
Query: 2116 KDSSSRTLEIEIIWSNRISDES 2137
KD+SSR+L+IEI WSNR +DE+
Sbjct: 2113 KDTSSRSLDIEIAWSNRTTDET 2134
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186496022|ref|NP_177870.2| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|334183974|ref|NP_001185419.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|332197859|gb|AEE35980.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|332197860|gb|AEE35981.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2983 bits (7734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1485/2136 (69%), Positives = 1766/2136 (82%), Gaps = 2/2136 (0%)
Query: 3 MSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELIT 62
M K+ P Q S+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T
Sbjct: 1 MLKAFLPGTQEEETLSSLQSGKVDAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTT 60
Query: 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVL 122
R+L IAK K+EAR LIGS+ QAMPLFIS+LR+GT LAKVNVA+ L VLCKD+DLRLKVL
Sbjct: 61 ARLLGIAKGKREARRLIGSYGQAMPLFISMLRNGTTLAKVNVASILCVLCKDKDLRLKVL 120
Query: 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182
LGGCIPPLLS+LKS + +TRKAAAEA+YEVSS G+S+DH+GMKIF+TEGVVPTLWDQL+
Sbjct: 121 LGGCIPPLLSVLKSGTMETRKAAAEAIYEVSSAGISNDHIGMKIFITEGVVPTLWDQLSL 180
Query: 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
K QD VV+G+VTGALRNLCG DGYWR TLE GVDI+V LLSSDN +Q+NAASLLAR
Sbjct: 181 KGNQDKVVEGYVTGALRNLCGVDDGYWRLTLEGSGVDIVVSLLSSDNPNSQANAASLLAR 240
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG 302
L+L+F DSI +++SG VK+L+QL+ Q NDI+VRASAADALEALS+ S +AKK V A G
Sbjct: 241 LVLSFCDSIQKILNSGVVKSLIQLLEQKNDINVRASAADALEALSANSDEAKKCVKDAGG 300
Query: 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVA 362
V LI AIVAPSKECMQG+ GQ+LQ HAT ALAN++GGM L++YLG++SQSPRL P+
Sbjct: 301 VHALIEAIVAPSKECMQGKHGQSLQEHATGALANVFGGMRHLIIYLGQVSQSPRLTEPIG 360
Query: 363 DIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI 422
D+IGALAYALM+F+Q ++ FD IE ILV LLKP D KL+QER+LEAMASLYGN
Sbjct: 361 DVIGALAYALMIFKQPESSEN-IFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNS 419
Query: 423 FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482
LS ++ AEAK+VLI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKREGIQL IS
Sbjct: 420 SLSCYLDDAEAKRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISF 479
Query: 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWI 542
LGLSSEQHQEYAV+++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW
Sbjct: 480 LGLSSEQHQEYAVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWN 539
Query: 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL 602
LCCHSE+IR CVE AG +PAFLWLLK+GGP Q+ SA L KL+ AD ATINQLLALLL
Sbjct: 540 LCCHSEEIRDCVERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLL 599
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLA 662
GD P+SK VI+VLGHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLA
Sbjct: 600 GDDPTSKIQVIEVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLA 659
Query: 663 DLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
DLFS RQDICG LATD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIA
Sbjct: 660 DLFSSRQDICGHLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIA 719
Query: 723 EGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGK 782
EGD+K LIKLAK SSI++AE AV+ALANLLSDPDIAAE L EDVVSA TR+LA+G+ EGK
Sbjct: 720 EGDIKSLIKLAKNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGK 779
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842
+NASRALHQLLK+FPV DVLKG+AQCRF +L+LVDSL ++D++ D + LEVVALLA+T
Sbjct: 780 RNASRALHQLLKNFPVCDVLKGSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKT 839
Query: 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMA 902
K G+NF+YPPW ALAEVPSS+E LV CLAEG +QDKAIE+LSRLC DQ +L + +++
Sbjct: 840 KSGVNFSYPPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQQFLLSELIVS 899
Query: 903 RSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMM 962
R S+ LADRI+++SSLEVRVG ALL+CAAKE K+ + LD SG+LK L++ALVDM+
Sbjct: 900 RPKSMLVLADRIVNASSLEVRVGSTALLLCAAKEKKQLITETLDQSGFLKLLLHALVDMI 959
Query: 963 KQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNN 1022
K NS+ SL+ EV+TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S +
Sbjct: 960 KHNSTSFSLETEVQTPKGFLEKNVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSK 1019
Query: 1023 VTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIP 1082
V VMEAG LE L KLA YTS+ QAEFEDTEGIWISAL LAI+FQD N+ S TMRIIP
Sbjct: 1020 VIVMEAGGLEVLVGKLARYTSSAQAEFEDTEGIWISALLLAIMFQDDNVSFSSTTMRIIP 1079
Query: 1083 ALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLV 1142
LA+LL SDE+IDR+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ES+ NLV
Sbjct: 1080 TLAVLLGSDELIDRYFAAHAMASLVCTRNRGINLTIANSGAVSGIINLLGYVESEILNLV 1139
Query: 1143 ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLL 1202
AL+ EF LV+ PD+V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L
Sbjct: 1140 ALANEFSLVKEPDQVILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQIL 1199
Query: 1203 TQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLS 1262
+I DGSDTNKL+MAEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LS
Sbjct: 1200 IRIADGSDTNKLLMAEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALS 1259
Query: 1263 SLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEV 1322
SLNQLIAVL LGSR AR SAA AL++LFDAENI++S++A QAV PL+D+L + SE E EV
Sbjct: 1260 SLNQLIAVLRLGSRSARYSAAGALNELFDAENIRNSEIACQAVQPLMDILGSVSESEQEV 1319
Query: 1323 ALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS-NSSLELKRNAAELCFIMFGNAKI 1381
AL AL+KL+SGNTS LL D++G+LLE++ KILSS +S ELK NAA LC ++F N I
Sbjct: 1320 ALSALIKLSSGNTSNTALLIDVEGSLLENVIKILSSATASEELKINAARLCSVVFSNKNI 1379
Query: 1382 IANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSG 1441
+ AS C++PLI+LMQS+ S VE+AV A + LLDDEQ +EL +++ +LLV LVSG
Sbjct: 1380 RTSASASGCMKPLITLMQSERSAAVEAAVFAIKILLDDEQHLELAAAHNIQELLVGLVSG 1439
Query: 1442 TNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTN 1501
N+ ++EA++ ALIKLGKDR PRKL MV+AGII+ CL+LLP A S+LCS + ELFRILTN
Sbjct: 1440 KNYVIIEASLSALIKLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVVELFRILTN 1499
Query: 1502 SSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIE 1561
S IAR D AK VEPLF VLL+ D +LWGQHSALQALVNILEK Q+L TPS+ I
Sbjct: 1500 SGVIARRPDVAKTVEPLFAVLLRSDLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIV 1559
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVK 1621
PL+SFLES S AIQQLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+K
Sbjct: 1560 PLISFLESSSQAIQQLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIK 1619
Query: 1622 ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVP 1681
ALEKIS SWPKAV DA GIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V
Sbjct: 1620 ALEKISASWPKAVLDAEGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVE 1679
Query: 1682 VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSG 1741
+ VLVK+L ST+EST+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG
Sbjct: 1680 LPVLVKLLFSTIESTVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESG 1739
Query: 1742 RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARAS 1801
LLE +FNN R+R++K+ KYAIAPLSQYLLDP TRSE G+LLAALALGDLSQHEGL+R+S
Sbjct: 1740 SLLEVIFNNPRVRELKLCKYAIAPLSQYLLDPHTRSEPGRLLAALALGDLSQHEGLSRSS 1799
Query: 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
SVSACRALIS+LE+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS N
Sbjct: 1800 GSVSACRALISVLEEQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCN 1859
Query: 1862 AEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
EV+GQAAL+ KFLFSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF N
Sbjct: 1860 PEVSGQAALMVKFLFSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSN 1919
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
FPKL SEAAT CIPHLVGALKSG E QG VLD L LLR+SW+ M IDVAKSQAMIAAE
Sbjct: 1920 FPKLRASEAATFCIPHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSIDVAKSQAMIAAE 1979
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP 2041
AIP+LQMLMKTCPP FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN P
Sbjct: 1980 AIPVLQMLMKTCPPRFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCP 2039
Query: 2042 PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTE 2101
PRQTKVVS+S +PEWKEGFTWAFDVPPKGQKLHIICKSK+TFGK+TLG+VTIQIDKVVTE
Sbjct: 2040 PRQTKVVSNSTTPEWKEGFTWAFDVPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTE 2099
Query: 2102 GVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRISDES 2137
G YSG +LNH+N+KD+SSR+L+IEI WSNR +DE+
Sbjct: 2100 GEYSGSLSLNHENSKDASSRSLDIEIAWSNRTTDET 2135
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2138 | ||||||
| TAIR|locus:2204700 | 2136 | AT1G77460 "AT1G77460" [Arabido | 0.998 | 0.999 | 0.647 | 0.0 | |
| TAIR|locus:2205866 | 2114 | AT1G44120 [Arabidopsis thalian | 0.982 | 0.993 | 0.510 | 0.0 | |
| TAIR|locus:2827868 | 2150 | CSI1 "cellulose synthase-inter | 0.988 | 0.983 | 0.440 | 0.0 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.129 | 0.453 | 0.228 | 0.00064 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.079 | 0.276 | 0.253 | 7.1e-09 | |
| TAIR|locus:2154124 | 559 | AT5G62560 [Arabidopsis thalian | 0.059 | 0.227 | 0.316 | 0.0007 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.076 | 0.259 | 0.284 | 1.6e-05 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.044 | 0.134 | 0.381 | 6.6e-08 | |
| TAIR|locus:2096687 | 355 | AT3G01400 [Arabidopsis thalian | 0.099 | 0.597 | 0.284 | 1e-07 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.045 | 0.127 | 0.346 | 1.3e-07 |
| TAIR|locus:2204700 AT1G77460 "AT1G77460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6906 (2436.1 bits), Expect = 0., P = 0.
Identities = 1382/2136 (64%), Positives = 1650/2136 (77%)
Query: 3 MSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELIT 62
M K+ P Q S+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T
Sbjct: 1 MLKAFLPGTQEEETLSSLQSGKVDAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTT 60
Query: 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVL 122
R+L IAK K+EAR LIGS+ QAMPLFIS+LR+GT LAKVNVA+ L VLCKD+DLRLKVL
Sbjct: 61 ARLLGIAKGKREARRLIGSYGQAMPLFISMLRNGTTLAKVNVASILCVLCKDKDLRLKVL 120
Query: 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182
LGGCIPPLLS+LKS + +TRKAAAEA+YEVSS G+S+DH+GMKIF+TEGVVPTLWDQL+
Sbjct: 121 LGGCIPPLLSVLKSGTMETRKAAAEAIYEVSSAGISNDHIGMKIFITEGVVPTLWDQLSL 180
Query: 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXR 242
K QD VV+G+VTGALRNLCG DGYWR TLE GVDI+V R
Sbjct: 181 KGNQDKVVEGYVTGALRNLCGVDDGYWRLTLEGSGVDIVVSLLSSDNPNSQANAASLLAR 240
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXDG 302
L+L+F DSI +++SG VK+L+QL+ Q NDI G
Sbjct: 241 LVLSFCDSIQKILNSGVVKSLIQLLEQKNDINVRASAADALEALSANSDEAKKCVKDAGG 300
Query: 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVA 362
V LI AIVAPSKECMQG+ GQ+LQ HAT ALAN++GGM L++YLG++SQSPRL P+
Sbjct: 301 VHALIEAIVAPSKECMQGKHGQSLQEHATGALANVFGGMRHLIIYLGQVSQSPRLTEPIG 360
Query: 363 DIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI 422
D+IGALAYALM+F+Q + FD IE ILV LLKP D KL+QER+LEAMASLYGN
Sbjct: 361 DVIGALAYALMIFKQPES-SENIFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNS 419
Query: 423 FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRXXXXXXXXX 482
LS ++ AEAK+VLI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKR
Sbjct: 420 SLSCYLDDAEAKRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISF 479
Query: 483 XXXXXXXHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWI 542
HQEYAV+++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW
Sbjct: 480 LGLSSEQHQEYAVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWN 539
Query: 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL 602
LCCHSE+IR CVE AG +PAFLWLLK+GGP Q+ SA L KL+ AD ATINQLLALLL
Sbjct: 540 LCCHSEEIRDCVERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLL 599
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLA 662
GD P+SK VI+VLGHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLA
Sbjct: 600 GDDPTSKIQVIEVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLA 659
Query: 663 DLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
DLFS RQDICG LATD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIA
Sbjct: 660 DLFSSRQDICGHLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIA 719
Query: 723 EGDVKPLIKLAKTSSIDXXXXXXXXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGK 782
EGD+K LIKLAK SSI+ SDPDIAAE L EDVVSA TR+LA+G+ EGK
Sbjct: 720 EGDIKSLIKLAKNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGK 779
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXXXRT 842
+NASRALHQLLK+FPV DVLKG+AQCRF +L+LVDSL ++D++ +T
Sbjct: 780 RNASRALHQLLKNFPVCDVLKGSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKT 839
Query: 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMA 902
K G+NF+YPPW ALAEVPSS+E LV CLAEG +QDKAIE+LSRLC DQ +L + +++
Sbjct: 840 KSGVNFSYPPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQQFLLSELIVS 899
Query: 903 RSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMM 962
R S+ LADRI+++SSLEVRVG ALL+CAAKE K+ + LD SG+LK L++ALVDM+
Sbjct: 900 RPKSMLVLADRIVNASSLEVRVGSTALLLCAAKEKKQLITETLDQSGFLKLLLHALVDMI 959
Query: 963 KQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNN 1022
K NS+ SL+ EV+TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S +
Sbjct: 960 KHNSTSFSLETEVQTPKGFLEKNVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSK 1019
Query: 1023 VTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIP 1082
V VMEAG LE L KLA YTS+ QAEFEDTEGIWISAL LAI+FQD N+ S TMRIIP
Sbjct: 1020 VIVMEAGGLEVLVGKLARYTSSAQAEFEDTEGIWISALLLAIMFQDDNVSFSSTTMRIIP 1079
Query: 1083 ALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLV 1142
LA+LL SDE+IDR+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ES+ NLV
Sbjct: 1080 TLAVLLGSDELIDRYFAAHAMASLVCTRNRGINLTIANSGAVSGIINLLGYVESEILNLV 1139
Query: 1143 ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLL 1202
AL+ EF LV+ PD+V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L
Sbjct: 1140 ALANEFSLVKEPDQVILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQIL 1199
Query: 1203 TQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLS 1262
+I DGSDTNKL+MAEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LS
Sbjct: 1200 IRIADGSDTNKLLMAEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALS 1259
Query: 1263 SLNQLIAVLHXXXXXXXXXXXXXXHQLFDAENIKDSDLAGQAVPPLVDMXXXXXXXXXXX 1322
SLNQLIAVL ++LFDAENI++S++A QAV PL+D+
Sbjct: 1260 SLNQLIAVLRLGSRSARYSAAGALNELFDAENIRNSEIACQAVQPLMDILGSVSESEQEV 1319
Query: 1323 XXXXXXKLTSGNTSKACLLTDIDGNLLESLYKILSS-NSSLELKRNAAELCFIMFGNAKI 1381
KL+SGNTS LL D++G+LLE++ KILSS +S ELK NAA LC ++F N I
Sbjct: 1320 ALSALIKLSSGNTSNTALLIDVEGSLLENVIKILSSATASEELKINAARLCSVVFSNKNI 1379
Query: 1382 IANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSG 1441
+ AS C++PLI+LMQS+ S VE+AV A + LLDDEQ +EL +++ +LLV LVSG
Sbjct: 1380 RTSASASGCMKPLITLMQSERSAAVEAAVFAIKILLDDEQHLELAAAHNIQELLVGLVSG 1439
Query: 1442 TNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTN 1501
N+ ++EA++ ALIKLGKDR PRKL MV+AGII+ CL+LLP A S+LCS + ELFRILTN
Sbjct: 1440 KNYVIIEASLSALIKLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVVELFRILTN 1499
Query: 1502 SSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIE 1561
S IAR D AK VEPLF VLL+ D +LWGQHSALQALVNILEK Q+L TPS+ I
Sbjct: 1500 SGVIARRPDVAKTVEPLFAVLLRSDLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIV 1559
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVK 1621
PL+SFLES S AIQQLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+K
Sbjct: 1560 PLISFLESSSQAIQQLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIK 1619
Query: 1622 ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVP 1681
ALEKIS SWPKAV DA GIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V
Sbjct: 1620 ALEKISASWPKAVLDAEGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVE 1679
Query: 1682 VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSG 1741
+ VLVK+L ST+EST+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG
Sbjct: 1680 LPVLVKLLFSTIESTVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESG 1739
Query: 1742 RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKXXXXXXXGDLSQHEGLXXXX 1801
LLE +FNN R+R++K+ KYAIAPLSQYLLDP TRSE G+ GDLSQHEGL
Sbjct: 1740 SLLEVIFNNPRVRELKLCKYAIAPLSQYLLDPHTRSEPGRLLAALALGDLSQHEGLSRSS 1799
Query: 1802 XXXXXXXXLISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
LIS+LE+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS N
Sbjct: 1800 GSVSACRALISVLEEQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCN 1859
Query: 1862 AEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
EV+GQAAL+ KFLFSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF N
Sbjct: 1860 PEVSGQAALMVKFLFSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSN 1919
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
FPKL SEAAT CIPHLVGALKSG E QG VLD L LLR+SW+ M IDVAKSQAMIAAE
Sbjct: 1920 FPKLRASEAATFCIPHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSIDVAKSQAMIAAE 1979
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP 2041
AIP+LQMLMKTCPP FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN P
Sbjct: 1980 AIPVLQMLMKTCPPRFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCP 2039
Query: 2042 PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTE 2101
PRQTKVVS+S +PEWKEGFTWAFDVPPKGQKLHIICKSK+TFGK+TLG+VTIQIDKVVTE
Sbjct: 2040 PRQTKVVSNSTTPEWKEGFTWAFDVPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTE 2099
Query: 2102 GVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRISDES 2137
G YSG +LNH+N+KD+SSR+L+IEI WSNR +DE+
Sbjct: 2100 GEYSGSLSLNHENSKDASSRSLDIEIAWSNRTTDET 2135
|
|
| TAIR|locus:2205866 AT1G44120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5257 (1855.6 bits), Expect = 0., P = 0.
Identities = 1080/2116 (51%), Positives = 1425/2116 (67%)
Query: 28 TSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMP 87
TS MDDPE T+ + +EQLHA SS QE+EL T R+L +AK KKE R +I + AMP
Sbjct: 2 TSEMDDPEKAAVTITRLIEQLHAKKSSAQEKELSTARLLGLAKGKKECRKIISQNVNAMP 61
Query: 88 LFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAE 147
FIS+LRSGT LAK+N A+ L+VLCKD+++R K+L+GGCIPPLLSLLKS+S D ++ AE
Sbjct: 62 AFISLLRSGTLLAKLNSASVLTVLCKDKNVRSKILIGGCIPPLLSLLKSDSVDAKRVVAE 121
Query: 148 ALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG 207
A+YEVS G+ D+VG KIFVTEGVVP+LWDQL KQD V+G + GALRNLCGDKDG
Sbjct: 122 AIYEVSLCGMDGDNVGTKIFVTEGVVPSLWDQLKTGKKQDKTVEGHLVGALRNLCGDKDG 181
Query: 208 YWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRLMLAFGDSIPTVIDSGAVKALVQLV 267
+W TLE GGVDII+ RL+ F SI V +SGAV+ LVQL+
Sbjct: 182 FWALTLEDGGVDIILKLLQSSNPVSQSNAASLLARLIRIFTSSISKVEESGAVQVLVQLL 241
Query: 268 GQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVPVLIGAIVAPSKECMQGQRGQALQ 327
G+ N + DG+ +LI A+VA SKE ++ + + LQ
Sbjct: 242 GEENSVFVRASVVNALEAITSKSEEAITVARDLDGIHLLISAVVASSKESVEEETERVLQ 301
Query: 328 GHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387
+ T+ALAN+ GGM L+VYLG LS SPRL P+ADI+GALAYAL F+ G E FD
Sbjct: 302 SYGTQALANLCGGMSGLIVYLGGLSLSPRLTEPIADILGALAYALRKFQLSCGDTREAFD 361
Query: 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD 447
E ILV LLKP D +L+ ER+LEAM SL+GN+ LS+ +++ +AK+VL+ L +AT
Sbjct: 362 PTLTEGILVKLLKPRDTQLIHERILEAMESLFGNVDLSKLLNNVDAKRVLVCLTILATDG 421
Query: 448 VREYLILSLTKLCRREVGIWEAIGKRXXXXXXXXXXXXXXXXHQEYAVQLIAILTEQVDD 507
RE +I L+ LC+ +W+AIGKR HQE +V+ +AILT+ V++
Sbjct: 422 PRERMITCLSNLCKHG-DVWDAIGKREGIQILIPYLGLSSEQHQELSVEFLAILTDNVEE 480
Query: 508 SKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
S+WA+T+AGGIPPL+Q+LE G SQKA++ A V+ LCCHSE+IR CVE AGA+PA L L
Sbjct: 481 SRWAVTSAGGIPPLLQILETGVSQKAKDDAVRVILNLCCHSEEIRLCVEKAGAIPALLGL 540
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626
LK+GGPK Q++SA L KLI+ AD + I Q+ AL LGD+P SK H+I+VLGHVL A E
Sbjct: 541 LKNGGPKSQESSANTLLKLIKTADPSVIEQVQALFLGDAPKSKTHLIRVLGHVLASASLE 600
Query: 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686
+ V KGSAAN GLRSLVQ L SSNE+ +E AASVLADLFS R+D+CG L DE NPC +
Sbjct: 601 EFVTKGSAANNGLRSLVQRLASSNEKMKENAASVLADLFSSRKDLCGGLGFDEDDNPCTK 660
Query: 687 LLTSNTQMVATQSARALGALSRPTKTKT-TNKMSYIAEGDVKPLIKLAKTSSIDXXXXXX 745
LL+ NT VATQ A ALG+LS PTK KT T K+S +KPLIK AKT+ I+
Sbjct: 661 LLSGNTHAVATQLAHALGSLSNPTKKKTATKKLSGPEVEVIKPLIKSAKTNPIESTENPM 720
Query: 746 XXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
SDP++AAE L +DVVSALTRVL EGT +GK+NAS ALHQLLKHF V DV KGN
Sbjct: 721 STLANLLSDPNVAAEALNDDVVSALTRVLREGTLQGKRNASHALHQLLKHFQVSDVFKGN 780
Query: 806 AQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXXXRTKQGLNFTYPPWAALAEVPSSIEP 865
QCRF V L+D LNA D+N + + K G N ++ P++A EVPS+++
Sbjct: 781 EQCRFAVSELIDLLNATDLNNSAFIDVLEVLSLLAKAKYGANLSHNPFSAFGEVPSNLDS 840
Query: 866 LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
LV LAEG P +QDKAIEILSR C Q +LG L+ +S SI +LA+R ++SSS E++VG
Sbjct: 841 LVRGLAEGHPLVQDKAIEILSRFCKTQFILLGRLLVTQSKSISSLANRTINSSSPEIKVG 900
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
GA LL+CAAK +A++ SGYLK L+ L+DM KQNS +S IE++ PR ++
Sbjct: 901 GAILLVCAAKNDITLWAEAVEQSGYLKTLVNTLLDMSKQNSKSASYGIEIQRPRSFITSN 960
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
DD ++ DP TILG T ++WLL II S +N + VME LE +++ L SN
Sbjct: 961 LCLRMDDSEMVDPVTILGSTASMWLLSIICSSHPSNRLVVMEGNGLEIIAENLQRNKSNT 1020
Query: 1046 QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMAS 1105
Q D+E WI+ FLA++ Q+ +V SPAT I+ LA ++S+++ID +F AQ +A+
Sbjct: 1021 QENSSDSEEKWIAMSFLAVMSQEPKVVSSPATENILQTLAPFMQSEQMIDGYFTAQVLAA 1080
Query: 1106 LVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEI 1165
LV + I I NS V I L+G ESDT +L AL+EE LV+ P E LE LFE
Sbjct: 1081 LVRHKNDKTISEIMNSDIVETTINLVGCEESDTRSLCALAEELSLVQNPYEATLEVLFEN 1140
Query: 1166 EDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDAL 1225
E VR GS +K IPLLV++L+P D+ G PVA+RLL +I D D +KL++AEAG LDAL
Sbjct: 1141 ERVRSGSFTKKCIPLLVNLLKPYADKVGGIPVAIRLLRRIADNDDLSKLLIAEAGALDAL 1200
Query: 1226 TKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHXXXXXXXXXXXXX 1285
KYLSLSPQDSTE T++EL LF +P++ R++ ++SS+ QLI +LH
Sbjct: 1201 AKYLSLSPQDSTEITVSELLESLFRSPEITRHKTAISSMKQLIGILHLASRSTRYNAARV 1260
Query: 1286 XHQLFDAENIKDSDLAGQAVPPLVDMXXXXXXXXXXXXXXXXXKLTSGNTSKACLLTDID 1345
+LF +E+I+DS+LA +A+ PL++M KLT G + +LT ++
Sbjct: 1261 LCELFSSEHIRDSELAWKALSPLIEMLNTTLESERVAALTALVKLTMGINPRPDILTSLE 1320
Query: 1346 GNLLESLYKILS-SNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSI 1404
GN L+++YKILS +SSLE K +AA +C +F N + + A+ CI LISL+++ S
Sbjct: 1321 GNPLDNIYKILSLDSSSLESKTSAARICRFLFTNEGLRTSTSAACCIVSLISLIRTGKST 1380
Query: 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPR 1464
+E+ + A +RLLD ++ VE+ E +D V+L V+ N+ + EA + L K+ KD TPR
Sbjct: 1381 AIEAGMFALDRLLDIKRFVEVAEEHDCVNLFYGYVASENYLISEAAISCLTKMAKDNTPR 1440
Query: 1465 KLQMVKAGIIDNCLDLLPVAP-SALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLL 1523
K+ ++K GII+ C+ L +P S+LCS IA+LFR+LTN IARS DA K+V+PL ++LL
Sbjct: 1441 KMDLIKMGIIEKCISQLSKSPPSSLCSVIADLFRVLTNVGVIARSQDAIKMVQPLLLILL 1500
Query: 1524 QPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLT 1583
+ D GQ LQA+ NILEKP L +LK+ S +I PL+ LES S A++ T LLT
Sbjct: 1501 RQDLDFQGQLGGLQAIANILEKPMVLESLKIASSTIIMPLIPLLESESIAVKNATTILLT 1560
Query: 1584 HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEI 1643
LL + FQ++ITTKN + PLV+L GI + NLQ+ A+ LE+ S +WPK VAD GGI E+
Sbjct: 1561 SLLEMQRFQEEITTKNLIAPLVKLVGIRVRNLQEIALMGLERSSVTWPKEVADTGGIQEL 1620
Query: 1644 AKVIIQDDPQPPHSLWESAALVLSNVLRFNTE-YYFKVPVVVLVKMLHSTLESTITVALN 1702
+KVII +DPQ P LWESAA +L N+LR N E YYF V + VL KML ST EST+ +A++
Sbjct: 1621 SKVIIDEDPQLPVYLWESAAFILCNILRINPEHYYFTVTIPVLSKMLFSTAESTVILAID 1680
Query: 1703 ALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYA 1762
AL+I E D+SS ++M ++ +DALLDLLRSH CEE S RLLE + N ++R+ K+ ++
Sbjct: 1681 ALIIRENQDSSSVQEMAESSALDALLDLLRSHHCEELSARLLELILRNPKVRETKICQFV 1740
Query: 1763 IAPLSQYLLDPQTRSESGKXXXXXXXGDLSQHEGLXXXXXXXXXXXXLISLLEDQSTDEM 1822
+ PLS+Y+LDP T SES K GD+SQHEGL LISLLED+ ++EM
Sbjct: 1741 LTPLSEYILDPDTISESAKILIAMALGDISQHEGLAKATDSPVACRALISLLEDEPSEEM 1800
Query: 1823 KMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQ 1882
+MV + AL+NF M SRT+R+A+AEAGG+ VQE+L S+N +V+ QAAL+ K LFSNHTLQ
Sbjct: 1801 QMVVMRALENFAMHSRTSRKAMAEAGGVYWVQEMLRSSNPQVSTQAALIIKSLFSNHTLQ 1860
Query: 1883 EYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGAL 1942
EYVS E+I+SLT A+ERE W+T IN E++RTL+ I FPKL +SEAAT CIPHL+GAL
Sbjct: 1861 EYVSGEIIKSLTNAMEREFWTTTAINVEIVRTLNTILTTFPKLRSSEAATACIPHLIGAL 1920
Query: 1943 KSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKT-----CPPSF 1997
KSG + A+ S +DT+ LR SW+TMP + A+SQA++AA+AIP+LQ++MK+ P SF
Sbjct: 1921 KSGEQEARDSAMDTIYTLRQSWTTMPTETARSQAVLAADAIPVLQLMMKSKLKSPAPSSF 1980
Query: 1998 HERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWK 2057
HER +SLL+CLPG LTV IKRG+NLK++ NAFCRL I N P ++TKVV S SP WK
Sbjct: 1981 HERGNSLLNCLPGSLTVAIKRGDNLKRS----NAFCRLIIDNCPTKKTKVVKRSSSPVWK 2036
Query: 2058 EGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKD 2117
E FTW F PP+GQ L I+CKS N F LGKV I IDKV++EG YSG+F LN ++ KD
Sbjct: 2037 ESFTWDFAAPPRGQFLEIVCKSNNIFRNKNLGKVRIPIDKVLSEGSYSGIFKLNDESKKD 2096
Query: 2118 SSS-RTLEIEIIWSNR 2132
+SS R+LEIEI+WSN+
Sbjct: 2097 NSSDRSLEIEIVWSNQ 2112
|
|
| TAIR|locus:2827868 CSI1 "cellulose synthase-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4531 (1600.1 bits), Expect = 0., P = 0.
Identities = 944/2141 (44%), Positives = 1369/2141 (63%)
Query: 1 MQMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQEREL 60
M+M S P P H ST++ + T++M+DP+ T+++VA+ +EQL SS QERE
Sbjct: 28 MKMHDSEPPTP--H---STTKMSLRDRTTSMEDPDGTLASVAQCIEQLRQGSSSAQEREY 82
Query: 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120
++L + + ++ A +GSH+QA+P+ +S+LRSG+ K+ A L LCK+ +LR+K
Sbjct: 83 CLKQLLDLIEMRENAFSAVGSHSQAVPVLVSLLRSGSVGVKIQAATVLGSLCKENELRVK 142
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
VLLGGCIPPLL LLKS S + + AAA+ +Y VS GG+ D HVG KIF TEGVVP LWDQL
Sbjct: 143 VLLGGCIPPLLGLLKSSSVEGQIAAAKTIYAVSEGGVKD-HVGSKIFSTEGVVPVLWDQL 201
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXX 240
NK+ V G +TGAL+NL +G+W T+ AGGVD++V
Sbjct: 202 RSGNKKGEV-DGLLTGALKNLSSTTEGFWSETIRAGGVDVLVKLLTSGQSSTLSNVCFLL 260
Query: 241 XRLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+M+ +V+ + K L++L+G N+
Sbjct: 261 ACMMMEDASVCSSVLTADITKQLLKLLGSGNEAPVRAEAAAALKSLSAQSKEAKREIANS 320
Query: 301 DGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360
+G+PVLI A +APSKE MQG+ QALQ +A ALANI GG+ ++ LG+ +S A
Sbjct: 321 NGIPVLINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQ 380
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420
AD +GALA ALM+++ K+ D +E L+ KP LVQER +EA+ASLYG
Sbjct: 381 TADTLGALASALMIYDGKAETT-RASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYG 439
Query: 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRXXXXXXX 480
N LS +S+++AK++L+GLITMA +V++ L+ +L LC E +W+A+ R
Sbjct: 440 NSILSVKLSNSDAKRLLVGLITMAVNEVQDELVKALLMLCNHEGSLWQALQGREGIQLLI 499
Query: 481 XXXXXXXXXHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVL 540
QE AV L+ +L+ + D+SKWAITAAGGIPPLVQ+LE GS KARE +A +L
Sbjct: 500 SLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAREDSATIL 559
Query: 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLAL 600
LC HSEDIRACVESA AVPA LWLLK+G P G++ +A L LI +D+ATI+QL AL
Sbjct: 560 RNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTAL 619
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
L D P SK +V+ L +L++ D++++GSA+N + +++++++S EE Q +AS
Sbjct: 620 LTSDLPESKIYVLDALKSMLSVVPFNDMLREGSASNDAIETMIKLMSSGKEETQANSASA 679
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720
LA +F R+D+ S + + ++LL +++ + +S R L A+ K N+
Sbjct: 680 LAAIFQSRKDLRESALALKTLLSAIKLLNVDSERILVESCRCLAAILLSIKE---NRDVA 736
Query: 721 IAEGDVKP-LIKLAKTSSIDXXXXXXXXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTS 779
I+ + P ++ LA +S ++ D +++ +V++ED++ + TR+L EGT
Sbjct: 737 ISAREALPTIVSLANSSVLEVAEQGMCALANLILDSEVSEKVIVEDIILSATRILREGTV 796
Query: 780 EGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXX 839
GK A+ A+ +LL + L + VLTLV L + D G
Sbjct: 797 SGKTLAAAAIARLLSRRRIDSALTDSVNRAGTVLTLVSLLESAD--GRSDAISEALDALA 854
Query: 840 XRTKQGLNFTYPP-WAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPAVLG 897
++ G N P WA LAE P+S+ P+V + P LQDKAIE+LSRLC DQP VLG
Sbjct: 855 IFSRSGANGNVKPAWAVLAESPNSMAPIVSSIVSVANPSLQDKAIEVLSRLCRDQPIVLG 914
Query: 898 DFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYA 957
+ + + ++A R++++ ++++GGAA++ICAAK ++ ++ L+ + + A
Sbjct: 915 NMVNNARDCVSSIAKRVINTRDPKIKIGGAAIIICAAKVDDQKMIENLNETQLCAKFVQA 974
Query: 958 LVDMMK--QNSSCSSLD---IEVRTPRGYMERTAFQEADDFDVPDPATILGG-TVALWLL 1011
LV ++ Q+ D I + P+ E + ++ + AT++ G +A+WLL
Sbjct: 975 LVGILDSVQDQEKDEKDKICICIH-PKEKEEDEEEEATENREGSTGATVISGDNLAIWLL 1033
Query: 1012 LIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANI 1071
++S + ++E+ +E ++D++ + QA+ + IW+ AL LAILFQD I
Sbjct: 1034 SVLSCHDEKSRAVILESEGIELITDRIGNRFL--QADNGEDANIWVCALLLAILFQDREI 1091
Query: 1072 VLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131
+ ATM+ +P L+ L++S+E DR+FAAQA+ASLVC+GS+G +L++ANSGA AG I+L+
Sbjct: 1092 TRAHATMKAVPVLSNLVKSEEYADRYFAAQALASLVCNGSRGTLLSVANSGAAAGFISLL 1151
Query: 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDR 1191
G + D L+ LS+EF LVRYPD+V LE+LF +ED+RVG+T+RK+IPLLV++L+PIPDR
Sbjct: 1152 GCSDDDIKELLQLSQEFTLVRYPDQVALERLFRVEDIRVGATSRKAIPLLVELLKPIPDR 1211
Query: 1192 PGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251
PGAP +++ LLTQ+ N ++M E+G L+ L+KYLSL PQD E T L ILFS+
Sbjct: 1212 PGAPLLSLNLLTQLAGDCPQNMIVMVESGALEGLSKYLSLGPQDEQEEAATGLLGILFSS 1271
Query: 1252 PDLIRYEASLSSLNQLIAVLHXXXXXXXXXXXXXXHQLFDAENIKDSDLAGQAVPPLVDM 1311
++ R+E++ +++QL+AVL LF A++I++++ + QAV PLV++
Sbjct: 1272 AEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALDSLFTADHIRNAESSRQAVQPLVEI 1331
Query: 1312 XXXXXXXXXXXXXXXXXKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAEL 1371
+L S N S+A + D++ N ++ L +ILSSN ++ELK +AAEL
Sbjct: 1332 LNTGSEREQHAAIAALVRLLSDNPSRALAVADVEMNAVDVLCRILSSNYTMELKGDAAEL 1391
Query: 1372 CFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDV 1431
C+++F N +I + A+ C++PL+SL+ ++ S S V A ++L+DDEQ ELV +
Sbjct: 1392 CYVLFANTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGA 1451
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCST 1491
V LV L+ G N+ L EA AL+KLGKDR KL+MVKAG+ID LD+L AP LC+
Sbjct: 1452 VVPLVGLLYGKNYVLHEAISRALVKLGKDRPACKLEMVKAGVIDCVLDILHEAPDFLCAA 1511
Query: 1492 IAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVT 1551
+EL RILTN++ IA+ AAK+VEPLF +L + +F GQHSALQ LVNILE PQ
Sbjct: 1512 FSELLRILTNNATIAKGQSAAKVVEPLFHLLTRLEFGADGQHSALQVLVNILEHPQCRAD 1571
Query: 1552 LKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG 1611
LTP QVIEPL+ LESPS A+QQL ELL+HLL +EH Q+D T+ A+ PL+ + G G
Sbjct: 1572 YTLTPHQVIEPLIPLLESPSPAVQQLAAELLSHLLYEEHLQKDPLTQLAIGPLIHVLGSG 1631
Query: 1612 ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
I LQQ AVKAL I+ +WP +A GG+ E++KVI+Q DP + LWESAA +L +L+
Sbjct: 1632 IHLLQQRAVKALVSIALTWPNEIAKEGGVSELSKVILQADPSLSNVLWESAASILVIILQ 1691
Query: 1672 FNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLL 1731
F++E+Y +VPV VLV++L S E+T+ ALNALL+ E D +SAE M ++G I+ALLDLL
Sbjct: 1692 FSSEFYLEVPVAVLVRLLRSASENTVVGALNALLVLESDDGTSAESMAESGAIEALLDLL 1751
Query: 1732 RSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKXXXXXXXGDL 1791
RSHQCE+T+ RLLE L NN +IR K +K AI PLSQYLLDPQT+++ + GDL
Sbjct: 1752 RSHQCEDTAARLLEVLLNNVKIRDSKATKTAILPLSQYLLDPQTQAQQARLLATLALGDL 1811
Query: 1792 SQHEGLXXXXXXXXXXXXLISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGIL 1851
Q+E L L+++LE+Q T+EMK+VAICALQN VM SR+N+RAVAEAGG+
Sbjct: 1812 FQNEALARSTDAASACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQ 1871
Query: 1852 VVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEV 1911
VV +L+ S++ E + QAA+ K LFSNHT+QEY S+E +R++TAA+E++LW+T T+N+E
Sbjct: 1872 VVLDLISSSDPETSVQAAMFVKLLFSNHTVQEYASSETVRAITAAIEKDLWATGTVNDEY 1931
Query: 1912 LRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDV 1971
L+ L+ +F NFP+L +E ATL IPHLV +LK+GSEA Q + LD L LLR +WS P +V
Sbjct: 1932 LKALNSLFNNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEV 1991
Query: 1972 AKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNA 2031
+++Q++ AA+AIP+LQ L+++ PP F E+A+ LL CLPG L VTIKRGNN+KQ++G +
Sbjct: 1992 SRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVTIKRGNNMKQSVGNPSV 2051
Query: 2032 FCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKV 2091
FC++T+GN PPRQTKV+S +PEW E F+W+F+ PPKGQKLHI CK+K+ GKS+ GKV
Sbjct: 2052 FCKITLGNNPPRQTKVISTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKV 2111
Query: 2092 TIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132
TIQID+VV G +G ++L ++ S R LEIE WSN+
Sbjct: 2112 TIQIDRVVMLGAVAGEYSLLPESK--SGPRNLEIEFQWSNK 2150
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 68/298 (22%), Positives = 127/298 (42%)
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQD 576
G+ L+ L +G+Q + AA + +L + + R C+ AGA+P + LL S P+ Q+
Sbjct: 324 GLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQE 383
Query: 577 ASAMALTKLI-----RAA--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV 629
+ AL L +A+ DS I +++ +L S ++ + L + + E+ V
Sbjct: 384 HAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSL--SVVDENKV 441
Query: 630 QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT 689
G+A + L+ +L + ++ AA+ + +L + + ++ +++ M L
Sbjct: 442 TIGAAG--AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIH-LMNFLV 498
Query: 690 SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD-VKPLIKLAKTSSI-DXXXXXXXX 747
T + ++ L L+ + K IA + + PL+++ KT S +
Sbjct: 499 DPTGGMIDEALSLLSILAGNPEGKIV-----IARSEPIPPLVEVIKTGSPRNRENAAAIL 553
Query: 748 XXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
+D + V AL + GT K+ AS L L H D LKGN
Sbjct: 554 WLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILE--LMHQANEDSLKGN 609
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGT 97
MS + +++L + S ++R I +++K + R+LI + A A+P+ +++L S
Sbjct: 330 MSVIRALVQRLSSR--STEDRRNAVSEIRSLSKRSTDNRILI-AEAGAIPVLVNLLTSED 386
Query: 98 PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157
+ N + L E+ + ++ G + ++ +L++ + + R+ AA L+ +S L
Sbjct: 387 VATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS---L 443
Query: 158 SDDHVGMKIFVT-EGVVPTLWDQLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213
+D++ KI + G +P L D L P+ K+D AL NLC RA +
Sbjct: 444 ADEN---KIIIGGSGAIPALVDLLENGTPRGKKDAAT------ALFNLCIYHGNKGRA-V 493
Query: 214 EAGGVDIIV 222
AG V +V
Sbjct: 494 RAGIVTALV 502
|
|
| TAIR|locus:2154124 AT5G62560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00070, P = 0.00070
Identities = 44/139 (31%), Positives = 69/139 (49%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKA 144
+PL I +L+SGT A+ +VA L L +++ ++ + + G + PLL L+S ES R+
Sbjct: 319 VPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGAVEPLLHALRSSESERARQD 378
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AA ALY +S + + + V G VPTL + + ++ L NL
Sbjct: 379 AALALYHLSL--IPSNRTRL---VRAGAVPTLLSMVRSGDSTSRILL-----VLCNLAAC 428
Query: 205 KDGYWRATLEAGGVDIIVG 223
DG A L+ V I+VG
Sbjct: 429 PDGKG-AMLDGNAVAILVG 446
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 51/179 (28%), Positives = 91/179 (50%)
Query: 491 QEYAVQLIAILTEQVDD-SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549
QE++V A+L +++ +K AI AG I +V++L+ GS +ARE AA L+ L E+
Sbjct: 404 QEHSVT--ALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDEN 461
Query: 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI-------RAADSATINQLLALLL 602
+ + +AGA+ A + LL+ G +G+ +A A+ L RA ++ L LL
Sbjct: 462 -KVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLK 520
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661
+ +L + T QE + A + + LV+++ + + N+E AA++L
Sbjct: 521 DAGGGMVDEALAILAILSTN--QEG--KTAIAEAESIPVLVEIIRTGSPRNRENAAAIL 575
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E AV ++A L V + K AI GGIP LV+++E GS + +E A L LC HS
Sbjct: 604 EKAVVVLANLAT-VREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFC 662
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588
V G +P + L KSG +G++ A L K +A
Sbjct: 663 NNVIREGVIPPLVALTKSGTARGKE-KAQNLLKYFKA 698
|
|
| TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 66/232 (28%), Positives = 112/232 (48%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QEY V I L+ D++K +I ++G I PLV+ L+ G+ A+E AA L L E+
Sbjct: 122 QEYGVTAILNLS-LCDENKESIASSGAIKPLVRALKMGTPTAKENAACALLRLS-QIEEN 179
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL-------IRAADSATINQLLALL-- 601
+ + +GA+P + LL++GG + + ++ AL L IRA S + L+ L+
Sbjct: 180 KVAIGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMAD 239
Query: 602 LGDSPSSK-AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
G + K A V+ +L V + +V++G G+ LV+++ + +E A S+
Sbjct: 240 FGSNMVDKSAFVMSLLMSVPES--KPAIVEEG-----GVPVLVEIVEVGTQRQKEMAVSI 292
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712
L L +A + + P + L + T A Q A AL L R ++
Sbjct: 293 LLQLCEESVVYRTMVAREGAIPPLVALSQAGTSR-AKQKAEALIELLRQPRS 343
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553
AV L+A L+ V + + AI GGIP LV+ ++ GSQ+ +E AA VL LC +S
Sbjct: 657 AVALLANLSA-VGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
V GA+P + L +SG + ++ + L+ D+
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDA 753
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2138 | |||
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.0 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-14 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 9e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-12 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 6e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-08 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 4e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 6e-05 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 5e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-04 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.002 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.003 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 0.004 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 3630 bits (9414), Expect = 0.0
Identities = 1484/2106 (70%), Positives = 1761/2106 (83%), Gaps = 4/2106 (0%)
Query: 27 GTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAM 86
TS MDDP+ T+++VA+ +EQL A SSPQE+EL T R+L +AK ++EAR IGSH+QAM
Sbjct: 1 RTSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAM 60
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA 146
PL +S+LRSGT AKVN AA L VLCK+EDLR+KVLLGGCIPPLLSLLKS S + +KAAA
Sbjct: 61 PLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAA 120
Query: 147 EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206
EA+Y VSSGGLSD HVG KIF TEGVVP+LWDQL P NKQD VV+G +TGALRNLCG D
Sbjct: 121 EAIYAVSSGGLSD-HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179
Query: 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266
G+W ATLEAGGVDI+V LLSS N+ AQ+NAASLLARLM+AF SI V+D+GAVK L++L
Sbjct: 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL 239
Query: 267 VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQAL 326
+GQ N++SVRA AA ALEALSS+S +AK+A+ A G+P LI A VAPSKE MQG+ QAL
Sbjct: 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQAL 299
Query: 327 QGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386
Q +A ALANI GGM AL++YLGELS+SPR AP+AD +GALAYALMVF+ + F
Sbjct: 300 QENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAE-STRAF 358
Query: 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA 446
D IE ILV LLKP D KLVQER++EA+ASLYGN +LS+ ++HAEAKKVL+GLITMATA
Sbjct: 359 DPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA 418
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
DV+E LI +L+ LC + G+WEA+G REG+QLLISLLGLSSEQ QEYAV L+AILT++VD
Sbjct: 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
+SKWAITAAGGIPPLVQLLE GSQKA+E +A VLW LCCHSEDIRACVESAGAVPA LWL
Sbjct: 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626
LK+GGPKGQ+ +A LTKL+R AD+ATI+QL ALLLGD P SK HV+ VLGHVL++A E
Sbjct: 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598
Query: 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686
DLV++GSAAN LR+L+Q+L+SS EE QE AASVLAD+FS RQD+C SLATDEI+NPC++
Sbjct: 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658
Query: 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746
LLT+NT+ VATQSARAL ALSR K K+SY AE +KPLIKLAK+SSI+ AE AV
Sbjct: 659 LLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716
Query: 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNA 806
ALANLLSDP++AAE L ED++ LTRVL EGT EGK+NA+RAL QLLKHFPV DVLK +
Sbjct: 717 ALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV 776
Query: 807 QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPL 866
QCR VL LVD LN+ D++ + ++ALE +ALLARTK G NF++PPWA LAEVPSS+EPL
Sbjct: 777 QCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836
Query: 867 VCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926
V CLAEG P +QDKAIEILSRLC DQP VLGD + S I +LADRI++SSSLEV++GG
Sbjct: 837 VRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896
Query: 927 AALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTA 986
ALLICAAKEH++ M+ALD SGYLK LI ALVDM+KQNS SL IE++TPRG++E
Sbjct: 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNL 956
Query: 987 FQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQ 1046
F + DDF+VPDPATILGGTVALWLL +I+S + + +MEAG +E L++KLASYTSN Q
Sbjct: 957 FADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQ 1016
Query: 1047 AEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASL 1106
AEFED+E IWISAL LAILFQD ++V +PATMR IP+LA LL+S+E IDR+FAAQA+ASL
Sbjct: 1017 AEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASL 1076
Query: 1107 VCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIE 1166
VC+GS+G +LA+ANSGAV GLI+L+G ESD NLVALSEEF LVR PD+V LE+LF +E
Sbjct: 1077 VCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136
Query: 1167 DVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALT 1226
D+RVG+TARK+IPLLVD+L+PIPDRPGAPP+A+ LLTQ+ +GSD NKL MAEAG LDALT
Sbjct: 1137 DIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALT 1196
Query: 1227 KYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARAL 1286
KYLSL PQDSTE +EL RILFS+P+L R+E++ ++NQL+AVL LGSR AR SAARAL
Sbjct: 1197 KYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARAL 1256
Query: 1287 HQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDG 1346
+LF AE+I+DS+LA QAV PLV+ML+ SE E A+ AL+KL+SGN SKA + D++G
Sbjct: 1257 QELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEG 1316
Query: 1347 NLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVV 1406
N LE+L KILSS+SSLELK +AAELC ++F N +I + P A+ CI+PLISL+ S+ S
Sbjct: 1317 NALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQ 1376
Query: 1407 ESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL 1466
E+ VCA +RLLDDEQ ELV + V LV LV GTN+ L EA + ALIKLGKDR P KL
Sbjct: 1377 EAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKL 1436
Query: 1467 QMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPD 1526
MVKAGII+ LD+LP AP +LCS IAEL RILTN+S+IA+ AAK+VEPLF++L +PD
Sbjct: 1437 DMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPD 1496
Query: 1527 FSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLL 1586
WGQHSALQALVNILEKPQ L +L LTPSQ IEPL+ LESPS A+QQL ELL+HLL
Sbjct: 1497 LGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLL 1556
Query: 1587 AQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKV 1646
A+EHFQQDITT+NAVVPLV+LAGIGIL+LQQ AVKALE IS SWPKAVADAGGIFE++KV
Sbjct: 1557 AEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKV 1616
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLI 1706
I+Q DPQPPH+LWESAA VLSN+LRF++EYYF+VPV VLVK+L ST EST+ VALNALL+
Sbjct: 1617 ILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLV 1676
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPL 1766
ER D+SSAEQM ++G I+ALL+LLRSHQCEE + RLLEALFNN ++R+MK +KYAIAPL
Sbjct: 1677 LERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPL 1736
Query: 1767 SQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVA 1826
SQYLLDPQTRS+ +LLAALALGDL QHEGLAR++ +VSACRAL+SLLEDQ T+EMKMVA
Sbjct: 1737 SQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVA 1796
Query: 1827 ICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVS 1886
ICALQN VM SRTN+RAVAEAGG+ VVQELLLS+N + +GQAALL K LFSNHT+QEY S
Sbjct: 1797 ICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQEYAS 1856
Query: 1887 NELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGS 1946
+ELIR+LTAALE++LWSTAT+NEEVLR L+V+F NFPKL +EAATLCIPHLVGALKSGS
Sbjct: 1857 SELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGS 1916
Query: 1947 EAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLH 2006
EAAQ + LDTL LLR SWS MP +VA++QAM AAEAIP+LQMLMK+ PP FHERA+SLL
Sbjct: 1917 EAAQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQ 1976
Query: 2007 CLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDV 2066
CLPG LTVTIKRGNNLKQ+MG TNAFC+LT+GNGPPRQTKVVSHS SPEWKEGFTWAFD
Sbjct: 1977 CLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDS 2036
Query: 2067 PPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIE 2126
PPKGQKLHI CKSKNTFGKS+LGKVTIQID+VV EG YSG ++LN ++NKD SSRTLEIE
Sbjct: 2037 PPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIE 2096
Query: 2127 IIWSNR 2132
WSNR
Sbjct: 2097 FQWSNR 2102
|
Length = 2102 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2012 LTVTIKRGNNLKQTM--GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDV-PP 2068
L VT+ NL G ++ + ++++G +TKVV ++++P W E F F V P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFE--FPVLDP 58
Query: 2069 KGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEG 2102
+ L + K+ F K LG+V I + +++ G
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSG 93
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-14
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP--PRQTKVVSHSISPEWKEGFTWAFDVP 2067
L VT+ NL K G ++ + ++++G ++TKVV ++++P W E FT+
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV-TL 59
Query: 2068 PKGQKLHIICKSKNTFGKST-LGKVT 2092
P+ +L I + FGK +G+VT
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527
EA+ + G+ L+SLL S E Q A ++ L+ +D+ A+ AGG+P LVQLL++
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL 582
++ + A L L ED + V AG VP + LL S Q + AL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 6e-12
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAFDV- 2066
LTV I NL K G ++ + ++++ P ++TKVV ++++P W E F F+V
Sbjct: 2 LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFE--FEVP 59
Query: 2067 PPKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEG 2102
PP+ +L I K+ FG+ +G+VTI + ++ G
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS 226
+ G +P L L+ D VQ AL NL + +A +EAGG+ +V LL
Sbjct: 3 VIQAGGLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286
S++ A L L D+ V+++G V LV L+ +N+ ++ +A AL L
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNL 118
Query: 287 SS 288
+S
Sbjct: 119 AS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485
+ V A L+ L++ + +V+ +L+ L +A+ + G+ L+ LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544
E+ + A+ + L +D+K + AGG+P LV LL++ ++ ++ A L L
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 119 LKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
V+ G +P L+SLL S + ++ AA AL +S+G ++D++ + V G +P L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG--NNDNI--QAVVEAGGLPALVQ 56
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238
L ++ + VV+ ALRNL + LEAGGV +V LL S N Q NA
Sbjct: 57 LLKSED--EEVVKA-ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATG 113
Query: 239 LLARLM 244
L+ L
Sbjct: 114 ALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 2011 CLTVTIKRGNNLKQTMGTT--NAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP- 2067
L V + NL T + + LT+G +++KV + +P W+EGFT F V
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFT--FLVRN 57
Query: 2068 PKGQKLHIICKSKNTFGKSTLGKVTI 2093
P+ Q+L I K T +LG +T+
Sbjct: 58 PENQELEIEVKDDKT--GKSLGSLTL 81
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 37/156 (23%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
A+ AGG+P LV LL + + + AA L L + D V AG +PA + LLKS
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
+ A+ AL L AA ++
Sbjct: 62 DEEVVKAALWALRNL--AAGPEDNKLIVLEAG---------------------------- 91
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
G+ LV +L+SSNE+ Q+ A L++L S
Sbjct: 92 -------GVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKSESTD 140
A +P +S+L S + A LS L + ++ ++ G +P L+ LLKSE +
Sbjct: 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
KAA AL +++G + I + G VP L + L+ N+ +Q TGAL N
Sbjct: 65 VVKAALWALRNLAAGPEDNK----LIVLEAGGVPKLVNLLDSSNED---IQKNATGALSN 117
Query: 201 LC 202
L
Sbjct: 118 LA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 1386 IASECIQPLISLMQSDLSIVVESAVCAFERLLD-DEQQVELVEGYDVVDLLVRLVSGTNH 1444
I + + L+SL+ S V A A L + ++ V + LV+L+ +
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILT 1500
+V+A + AL L KL +++AG + ++LL + + L
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHS-ISPEWKEGFTWAFDV 2066
G L V + + NL K+ + + +C L IG G ++TK PEW E F++
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG-GVTKKTKTDFRGGQHPEWDEELR--FEI 57
Query: 2067 PPKGQK-LHIICKSKNTFGKSTL-GKVTIQIDKVVTEGVYSGLFNL 2110
+ L + K L G + + + EG + + L
Sbjct: 58 TEDKKPILKVAVFDD-DKRKPDLIGDTEVDLSPALKEGEFDDWYEL 102
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAA-ELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
I L +L +LSS+ ++R AA L + GN I + + + L+ L++S+
Sbjct: 4 IQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 1403 SIVVESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCAL 1454
VV++A+ A L E +V V LV L+ +N + + AL
Sbjct: 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 2010 GCLTVTIKRGNNLKQTM---GTTNAFCRLTIGNGPP-RQTKVVSHSISPEWKEGFTWAFD 2065
G L VTIK LK + GT + + +I N +TKV + +P W E T
Sbjct: 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE--TKYIL 59
Query: 2066 VPPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGL 2107
V + L++ N K +G + ++ L
Sbjct: 60 VNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL 102
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
GL +LV +L+SS+E Q AA L++L + D ++ + ++LL S + V
Sbjct: 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65
Query: 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753
+ AL L+ NK+ + G V L+ L +S+ D + A AL+NL S
Sbjct: 66 VKAALWALRNLA---AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPR--QTKVVSHSISPEWKEGFTWAFDVP 2067
LTV + R N+ + + T + + L + +TK + +SI+P W E F F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFE--FRIQ 59
Query: 2068 PKGQK--LHIICKSKNTFGKSTLGKVTIQIDKV 2098
+ K L + ++ LG V + K+
Sbjct: 60 SQ-VKNVLELTVMDEDYVMDDHLGTVLFDVSKL 91
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
VI +G + ALV L+ ++D +V+ AA AL LS+ + +AVV A G+P L+ + +
Sbjct: 3 VIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 314 SKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAP 360
+E + A AL N+ GG+P LV L S + +
Sbjct: 62 DEE---------VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKN 110
Query: 361 VADIIGALA 369
+ LA
Sbjct: 111 ATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 22/225 (9%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRK-AAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
V+ G +P + + D + AA AL ++SG V V G VP
Sbjct: 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV----VVDAGAVPLFIQ 164
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQS---N 235
L+ V+ AL N+ GD +G L+ G ++ ++GLL S +A S N
Sbjct: 165 LLSSTEDD---VREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRN 220
Query: 236 AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295
A L+ L S A+ L +L+ + D V A A+ LS + +
Sbjct: 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQ 279
Query: 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340
AV+ L+ + S + +Q A R++ NI G
Sbjct: 280 AVLDVGIPGRLVELLSHESAK---------IQTPALRSVGNIVTG 315
|
Length = 526 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 225 LSSDNAAAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQNNDISVRASAADA 282
L SD+ Q A R +L+ S P VID+G V V+ + + ++ AA A
Sbjct: 80 LFSDDIEQQLQAVYKF-RKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWA 138
Query: 283 LEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP 342
L ++S + + K VV A VP+ I + + + + A AL NI G
Sbjct: 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE---------QAVWALGNIAGDSE 189
Query: 343 A 343
Sbjct: 190 G 190
|
Length = 526 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 2027 GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIIC-----KSKN 2081
GT++ F R+ NG +T VV S P W E F + L + SKN
Sbjct: 19 GTSDPFVRVFY-NGQTLETSVVKKSCYPRWNEVFEFELM-EGADSPLSVEVWDWDLVSKN 76
Query: 2082 TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121
F LGKV I + G F L D + S
Sbjct: 77 DF----LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESG 112
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2138 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.96 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.95 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.94 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.82 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.68 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.68 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.67 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.66 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.65 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.64 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.63 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.63 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.62 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.61 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.61 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.6 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.6 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.59 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.58 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.57 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.57 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.57 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.57 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.57 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.55 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.55 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.54 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.54 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.53 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.53 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.52 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.52 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.52 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.52 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.51 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.51 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.5 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.5 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.5 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.5 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.49 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.49 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.48 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.48 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.48 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.47 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.47 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.46 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.46 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.46 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.46 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.45 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.44 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.44 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.44 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.43 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.42 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.42 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.41 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.41 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.41 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.41 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.41 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.4 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.4 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.39 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.38 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.38 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.38 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.38 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.37 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.37 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.36 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.36 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.35 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.35 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.35 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.34 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.33 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.33 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.32 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.32 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.32 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.32 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.31 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.31 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.3 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.3 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.29 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.29 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.28 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.28 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.26 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.25 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.24 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.24 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.24 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.24 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.24 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.24 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.24 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.23 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.22 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.19 | |
| PLN03008 | 868 | Phospholipase D delta | 99.17 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.16 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.15 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.14 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.14 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.12 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.11 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.11 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.09 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.08 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.07 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.0 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 98.94 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.93 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.93 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.88 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.87 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.86 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.85 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.84 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.84 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.84 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.83 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.79 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.79 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.79 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.76 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.74 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.68 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.67 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.6 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.58 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 98.5 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.49 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.48 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.43 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.41 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.39 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.39 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.39 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.39 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.35 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.31 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.3 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.29 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.25 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.23 | |
| PLN02270 | 808 | phospholipase D alpha | 98.23 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.21 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.21 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.17 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.13 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.12 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.12 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.08 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.02 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.02 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 97.99 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.92 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.9 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.86 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 97.85 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.79 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.79 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.76 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 97.76 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.75 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.64 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.61 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 97.59 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.58 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 97.57 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 97.57 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.56 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.55 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.53 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.5 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 97.49 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.48 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.46 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.45 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.45 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.39 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.37 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.35 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.34 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 97.31 | |
| PLN02352 | 758 | phospholipase D epsilon | 97.29 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.23 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.19 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.07 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.05 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.04 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.02 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.99 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.94 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.92 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.85 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.82 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.81 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.7 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.64 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 96.61 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 96.57 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.48 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 96.45 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.41 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.33 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.28 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.18 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 96.09 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.93 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.78 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.75 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.71 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 95.66 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.53 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 95.48 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.3 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.21 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 95.19 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.18 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 95.07 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.07 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 94.93 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.82 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.68 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 94.45 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 94.37 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.34 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.11 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.95 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 93.9 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.79 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.78 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.73 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.4 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.2 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 92.97 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 92.82 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.73 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 92.68 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.42 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 92.39 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.09 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 92.05 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 91.84 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.81 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.24 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 91.17 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 90.82 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 90.43 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 89.73 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 88.78 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 88.51 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.31 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.27 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 88.07 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 87.95 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 87.34 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 87.14 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.94 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 86.92 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 86.65 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 86.55 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 86.04 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 85.91 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 85.83 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 85.35 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 84.92 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 83.69 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 83.31 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 82.9 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 82.78 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 82.71 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 82.65 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 82.23 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 81.87 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 81.7 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 81.29 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 81.0 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 80.62 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 80.53 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 80.5 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 80.38 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4428.73 Aligned_cols=2100 Identities=71% Similarity=1.057 Sum_probs=2034.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 000124 29 SAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATL 108 (2138)
Q Consensus 29 ~~med~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L 108 (2138)
..||||+++..++..++++|+..+.+++.++.++..|+.+++.++++|..|.++.|+||.|+.+|++++..+|.+++.+|
T Consensus 3 ~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL 82 (2102)
T PLN03200 3 SEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVL 82 (2102)
T ss_pred ccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45999999999999999999988777899999999999999999999999987799999999999999999999999999
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCCh
Q 000124 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDN 188 (2138)
Q Consensus 109 ~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~ 188 (2138)
.+++.+++++.++...|+||+|+.+|++.+++.|+.|+.+|++|+.++.+ ++..+..++..|+||.|++++.++++.+.
T Consensus 83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~-D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS-DHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcch-hhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 99999999999999999999999999999999999999999999985321 33334667889999999999998776666
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 189 VVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 189 ~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
.+++.+..+|.|||.++++++..+++.|+++.++.+|.++++..+..|+.+|++++..+++.+..+.+.|+++.|++++.
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~ 241 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLG 241 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence 68889999999999999999999999999999999999999999999999999999777778888999999999999998
Q ss_pred cCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHh
Q 000124 269 QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYL 348 (2138)
Q Consensus 269 s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L 348 (2138)
++.+..+|+.|+++|.+++.++++.|+.+.+.||++.|++++..++++++++.+.+.++++|+++|+|++|+.++++..|
T Consensus 242 sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L 321 (2102)
T PLN03200 242 QGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYL 321 (2102)
T ss_pred cCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHH
Confidence 66677899999999999999999999999999999999999999998998887777899999999999999999999999
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHH
Q 000124 349 GELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWV 428 (2138)
Q Consensus 349 ~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L 428 (2138)
++.+.+++.....++.+++++|..+.++ ++......++...+++.|+.+++++++..+++.+..+|..++.|+.+++.+
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L 400 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL 400 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Confidence 9999888888889999999999988876 333333456667888999999999987767899999999999999999999
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchh
Q 000124 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 429 ~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+.+++++|+.|+...+.+.|..++.+|..++.++.+.+..+.+.|++|.|+++|++++..+|+.|++.|+|++..++++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999877889
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+..+.+.|++|+|+++|.+++.++++.|+|+|+|++.+++.++..+.+.|++++|++++++++++.++.++++|.|+...
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888899998999999999999999999999999999999998
Q ss_pred hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 000124 589 ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2138)
Q Consensus 589 ~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~ 668 (2138)
.+.+.+++++.++..+++.++..+.++++++....+..+..+......|+++.|+.+++++++++++.|+++|.+++.++
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 88889999999999999999999999999998887777766666667899999999999999999999999999999999
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
++.+..++..|++++++.+|++++..+++.|++||.+++.+... .++..+++.|+|++|+++|++.+.++++.|+.+|
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985554 6778889999999999999999999999999999
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchh
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~ 828 (2138)
.|++.+++.+.++...|++++|+++|+++++++|++|+++|.+||...+.++.+...+.+.|.+.+|+++|++.+.+...
T Consensus 719 anLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 719 ANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999988888877
Q ss_pred HHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHH
Q 000124 829 VADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIG 908 (2138)
Q Consensus 829 ~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~ 908 (2138)
..+|+++|++|++.+.+..+.+|+|....+.|..+++|++|+.+++|.+|++|+++|+++|+++|.++|+++...++||+
T Consensus 799 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~ 878 (2102)
T PLN03200 799 TSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCIS 878 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHH
Confidence 88999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCceeehhhhHHHHHhcccchhhHHHHHhhcCCcHHHHHHHHHHhhhhccCCCCCcccccCCCcccccccc
Q 000124 909 ALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQ 988 (2138)
Q Consensus 909 ~La~~il~s~~~ev~~~~~~~~i~a~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~~ 988 (2138)
+||+|+++++++|||+|||..+|||+|+|++++|+.|+++||.+.+|++||+|+++++...+.|+++.+++|..++..+.
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (2102)
T PLN03200 879 SLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFA 958 (2102)
T ss_pred HHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCccccccchhhhHHHHHHHHHccC
Q 000124 989 EADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQD 1068 (2138)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~~~~~~~~~~ll~~lf~~ 1068 (2138)
.-.+|..|+|++|+|||+|+|||++||+||++||++||||||+|+|||||++|.+.||+++||++++||+++||+|||||
T Consensus 959 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~ 1038 (2102)
T PLN03200 959 DGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQD 1038 (2102)
T ss_pred cCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999545999999999999999999999999
Q ss_pred CccccchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhhcccccCCchhhhhhhhh
Q 000124 1069 ANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEF 1148 (2138)
Q Consensus 1069 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1148 (2138)
|||+|||+||++||+|+.+||||+.+|||||||+||||||||||||.+++||||||+|+|+|+||+|+|+++|++|+|||
T Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~ 1118 (2102)
T PLN03200 1039 RDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEF 1118 (2102)
T ss_pred hhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHhhhcccccccchhhhhhhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHhhcchhHHHHHH
Q 000124 1149 FLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKY 1228 (2138)
Q Consensus 1149 ~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~l~~l~k~ 1228 (2138)
+|++|||+++||+||++||||+|+||||+||+|||||||++|||+.|+.|++.|.+|+.||+.|+..|+|+|++++|+||
T Consensus 1119 ~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kv 1198 (2102)
T PLN03200 1119 SLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKY 1198 (2102)
T ss_pred hccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchHhHHHHHHhhhcccccccchHhhcCcchhH
Q 000124 1229 LSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPL 1308 (2138)
Q Consensus 1229 ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~a~~~~~~l 1308 (2138)
+|+.++++.+.++.|+|+|||.|+++|++.++.+|++|||+|||.|++.+|++|+++|++||++|++|+++.|||||+||
T Consensus 1199 LSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pL 1278 (2102)
T PLN03200 1199 LSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPL 1278 (2102)
T ss_pred HHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCcccc
Q 000124 1309 VDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIAS 1388 (2138)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~ 1388 (2138)
|+||++++++++++++.|||||..|+.++...+.|||||+|+.|||||++++|++||+++++||++||+|+++|+++.++
T Consensus 1279 v~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~a 1358 (2102)
T PLN03200 1279 VEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAA 1358 (2102)
T ss_pred HHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHh
Confidence 99999999999999999999998888888888888999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhhhhHhhccccchhHHHHHHHHHHHhhcCCCchhHHH
Q 000124 1389 ECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQM 1468 (2138)
Q Consensus 1389 ~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 1468 (2138)
.||+|||.||.+++++++|.|+++|+||+++|+++|.+++|++++|+|..+.+++|.++|.||+||.|++++||+||.||
T Consensus 1359 gaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Em 1438 (2102)
T PLN03200 1359 RCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDM 1438 (2102)
T ss_pred CCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhHHhhhCCCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCCCcCchhHHHHHHHHHHhhcCCcc
Q 000124 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQS 1548 (2138)
Q Consensus 1469 ~~~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~ 1548 (2138)
+++|+|++++.+|+..|+++|+.++|+||||+||+.|+||++|+|+|+|+|++++|++++.||||||||||||||||||+
T Consensus 1439 v~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~ 1518 (2102)
T PLN03200 1439 VKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQC 1518 (2102)
T ss_pred HHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccchHHHHHhhcCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHhhccchhhHHHHHHHHHHHhh
Q 000124 1549 LVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIST 1628 (2138)
Q Consensus 1549 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 1628 (2138)
+++++|+|+|+|+|||+|||||+++|||+|||+|+||++++|||+|++||+||+||||++|+|++++||+|+||||++++
T Consensus 1519 ~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~ 1598 (2102)
T PLN03200 1519 LASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISL 1598 (2102)
T ss_pred hhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcCCceeeeheecccCCCCChhhHHhHHHHHhhhhccCccceeechHHHHHHHhhhhhhhhHHHHhhhHhhhc
Q 000124 1629 SWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708 (2138)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1708 (2138)
+|||+|+|+|||+||+|||+|+||||||+|||||++||+|++||+++|||+||++|||||+||+.|+|+++|+++|+++|
T Consensus 1599 ~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~ 1678 (2102)
T PLN03200 1599 SWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVLE 1678 (2102)
T ss_pred ccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcChHHHHHHhhhHHHHHHHHhhcccchhHHhHHHHHhcccccccccchhhhcccccccccCccccchhhhHHHHHhh
Q 000124 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALAL 1788 (2138)
Q Consensus 1709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1788 (2138)
++|+|++|+|+|+||||+|+++||||||||+||||||+||||+||||||+|||+|+|||||||||||++|++|+||||||
T Consensus 1679 ~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2102)
T PLN03200 1679 RDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALAL 1758 (2102)
T ss_pred hcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhccCchHHHHHHHHhhhcCCchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhHH
Q 000124 1789 GDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQA 1868 (2138)
Q Consensus 1789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2138)
|||||||||||+||+|||||||||+||||||||||||||||||||||||||||||||||||||||||||+|||+|+|+||
T Consensus 1759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1838 (2102)
T PLN03200 1759 GDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQA 1838 (2102)
T ss_pred ccchhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHhHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHhhcCCcccccccchhhhhHHHhhhccchhH
Q 000124 1869 ALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEA 1948 (2138)
Q Consensus 1869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2138)
|||||+||||||||||||||+||+|||+||||||+|+|||+||+||||+||+||||||+||+||+||||||||||+|+||
T Consensus 1839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1918 (2102)
T PLN03200 1839 ALLIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEA 1918 (2102)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCceEEEEEecccccccccCC
Q 000124 1949 AQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGT 2028 (2138)
Q Consensus 1949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 2028 (2138)
|||++|||||||||+|++||+||+|||||+||||||+|||||||||||||||||+|+|||||+|+|+|++|+||+|+|||
T Consensus 1919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~~ 1998 (2102)
T PLN03200 1919 AQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMGN 1998 (2102)
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceeccee
Q 000124 2029 TNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLF 2108 (2138)
Q Consensus 2029 ~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~ 2108 (2138)
+||||+++|||||+|||||||||+||+|||+|+|+||+||+||||||||||||+|||++||||+|+|+|||+||+|+|+|
T Consensus 1999 sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~ 2078 (2102)
T PLN03200 1999 TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEY 2078 (2102)
T ss_pred CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccceEEEEEecCC
Q 000124 2109 NLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2109 ~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+|++.++|+|++|+++|||||+||
T Consensus 2079 ~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2079 SLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred ecCcccccCCCcceEEEEEEecCC
Confidence 999988899999999999999997
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-166 Score=1682.68 Aligned_cols=1591 Identities=24% Similarity=0.295 Sum_probs=1368.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCc---hh
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE---DL 117 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e---~~ 117 (2138)
|..++..|+. .+...|+.++..|.+++.. ++++..|.. .|+||+|+.+|++++.+.|.+|+++|..|+.+. .+
T Consensus 60 IP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 60 MPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 4445555543 4567789999999999987 477777777 899999999999999999999999999998763 34
Q ss_pred H-HHHHhcCChHHHHHhhccC---CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000124 118 R-LKVLLGGCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2138)
Q Consensus 118 r-~~v~~~G~Ip~Lv~LL~se---d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~ 193 (2138)
+ ..+...|+||+|+.+|.+. +.-+++.++.+|.+||.+ .+...+.+++.|+||.|++++.+++ +.++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~----~en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~e 208 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS----TDGFWSATLEAGGVDILVKLLSSGN---SDAQAN 208 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC----ccchHHHHHHcCCHHHHHHHHcCCC---HHHHHH
Confidence 4 3455789999999999985 444677889999999974 2222457789999999999998754 568999
Q ss_pred HHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-
Q 000124 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN- 271 (2138)
Q Consensus 194 Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~-s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s- 271 (2138)
|+.+|.+++.+.+.....+++.|+|+.|+.+|+++ ++.+|++|+++|.+|+..+++.+..+.+.|+++.|++++..+.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~ 288 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSK 288 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcch
Confidence 99999999988665668889999999999999864 5689999999999999888888999999999999999997322
Q ss_pred -------CHhHHHHHHHHHHHHhhcCHH-----------HH--HHH-HhcCCHHHHHHhhcCCchhhhhhhhhhhhH-HH
Q 000124 272 -------DISVRASAADALEALSSKSIK-----------AK--KAV-VAADGVPVLIGAIVAPSKECMQGQRGQALQ-GH 329 (2138)
Q Consensus 272 -------d~~vr~~Aa~aL~nLs~~s~e-----------~R--k~i-~e~ggL~~LI~LL~s~s~e~mq~~~~~alq-e~ 329 (2138)
+...++.|.++|.|++.+... .| ..+ ...|+++.++..+..+... .+ .+. .+
T Consensus 289 e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~-~~-----~i~~~~ 362 (2102)
T PLN03200 289 EFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAES-TR-----AFDPTV 362 (2102)
T ss_pred hhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhh-hh-----hccccc
Confidence 234689999999999885222 11 111 1236666666655443211 00 000 12
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCch---hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLA---APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKL 406 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss---~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~ 406 (2138)
+.++|.+++ ++++.. +.+..++..+. .+...+..+.+.+.++.|+.|+...+.+
T Consensus 363 v~~~LV~Ll--------------r~k~p~~vqe~V~eALasl~--------gN~~l~~~L~~~daik~LV~LL~~~~~e- 419 (2102)
T PLN03200 363 IEQILVKLL--------------KPRDTKLVQERIIEALASLY--------GNAYLSRKLNHAEAKKVLVGLITMATAD- 419 (2102)
T ss_pred cHHHHHHHh--------------CCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhccchhhhhhhhccCCHH-
Confidence 334454444 332221 12223222211 1122234455667789999999998875
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 407 VQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
+|..++.+|..++.+ .+.+..+.+.++++.|+.+|.+++...|+.++..|++++..+++++..|.+.|+||+|+++|++
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999999855 6888999999999999999999999999999999999999888889999999999999999999
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh----------------
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---------------- 549 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~---------------- 549 (2138)
++..+|+.|+++|+|++.+.++.+..+.+.|++++|+++|++++++.++.++++|.+|..+.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 9999999999999999986666777777899999999999999999999999999999642211
Q ss_pred ---------------------HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHH
Q 000124 550 ---------------------IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLAL 600 (2138)
Q Consensus 550 ---------------------~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~L 600 (2138)
.+......|+++.|+++++++++.+++.|+++|.+++... ..+++++++.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 1111224689999999999999999999999999998653 35789999999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000124 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2138)
Q Consensus 601 L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga 680 (2138)
|..++.+++..++++|++++..... ..+..+.+.|++++|+.++++++.++++.|+.+|.||+. +++.+..+.+.|+
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCc
Confidence 9999999999999999999864332 223345789999999999999999999999999999999 7888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHH--HHHHHHHHhhC-----
Q 000124 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE--TAVAALANLLS----- 753 (2138)
Q Consensus 681 V~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~--eAl~ALaNLa~----- 753 (2138)
+++|+++|++|++.+|++|+++|.+|+.+.+.++.....+...|++.+|+++|+..+.+... +|+.+|.+|+.
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~ 816 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGA 816 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999997776555777889999999999999998877666 49999999965
Q ss_pred ---CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--chhhhhhhhh-hhhHHHHHHhhc-------
Q 000124 754 ---DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--GDVLKGNAQC-RFVVLTLVDSLN------- 820 (2138)
Q Consensus 754 ---~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--~d~i~~~i~~-~gav~~LV~LL~------- 820 (2138)
+|.+...+..++.+.+|++++.+++|.++++|.++|.+||.++|. ++.+.....| .....+.++.-+
T Consensus 817 ~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2102)
T PLN03200 817 NFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896 (2102)
T ss_pred CCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecc
Confidence 356778888999999999999999999999999999999999987 6666665555 555666655433
Q ss_pred ------cCCCCchhHHHHHHHHHHHhh----------cc-------------------------cCCcccCCcccccccC
Q 000124 821 ------AMDMNGTDVADALEVVALLAR----------TK-------------------------QGLNFTYPPWAALAEV 859 (2138)
Q Consensus 821 ------s~~~~~~~~~~AL~ALa~La~----------~~-------------------------~~~~~i~~~~~~~~~~ 859 (2138)
..+++.+...++++..+++.. .+ +.+....|....+...
T Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (2102)
T PLN03200 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTV 976 (2102)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchH
Confidence 567777888888887666541 00 1111223566777778
Q ss_pred CCchHHHHHhhhcCChH--HHHHHHHHHHHhhccCCc-hhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH-----
Q 000124 860 PSSIEPLVCCLAEGPPP--LQDKAIEILSRLCGDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI----- 931 (2138)
Q Consensus 860 ~~~L~~Lv~ll~~~~~~--vq~~AieiL~~L~~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i----- 931 (2138)
+.|+..+++...++++. +..+|+++|.+.+..+.+ +|++|+++++.||++|+++|+||+.+.+|.++||+.|
T Consensus 977 a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~ 1056 (2102)
T PLN03200 977 ALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLAN 1056 (2102)
T ss_pred HHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHh
Confidence 89999999999999988 699999999998887755 9999999999999999999999999999999999999
Q ss_pred ------HhcccchhhHHHHH----------------------hhcCCcHHHHHHHHHHhhhhccCCCCC-----------
Q 000124 932 ------CAAKEHKKQSMDAL----------------------DLSGYLKPLIYALVDMMKQNSSCSSLD----------- 972 (2138)
Q Consensus 932 ------~a~k~~~~~~~~~L----------------------~~~g~~~~~i~~Lv~l~~~~~~~~~~d----------- 972 (2138)
.+||||++|+|+|| +++||+++|+++|++|++||+++++||
T Consensus 1057 ~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~ 1136 (2102)
T PLN03200 1057 LLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136 (2102)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhh
Confidence 78999999999988 899999999999999999999999999
Q ss_pred -cccccCCCccccccccccccCCcCCCCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCcccccc
Q 000124 973 -IEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051 (2138)
Q Consensus 973 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~ 1051 (2138)
||+ |+|+|+.||.++|+++|+|+|++.++.||..|..|+.+++.||..|+|+|++|+|++++ ++.++++.+.
T Consensus 1137 ~ir~----~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvL---Sl~~s~s~e~ 1209 (2102)
T PLN03200 1137 DIRV----GATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYL---SLGPQDSTEE 1209 (2102)
T ss_pred hhcc----hHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH---HhcCccchhH
Confidence 666 99999999999999999999999999999999999999999999999999999999999 5667777777
Q ss_pred chhhhHHHHHHHHHccCCccccchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhh
Q 000124 1052 TEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131 (2138)
Q Consensus 1052 ~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (2138)
+ +.++|+|||.+++.+++.++.+++++|+.+||+|++..||.||++
T Consensus 1210 a-----~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~a----------------------------- 1255 (2102)
T PLN03200 1210 A-----ASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARA----------------------------- 1255 (2102)
T ss_pred H-----HHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHH-----------------------------
Confidence 7 999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhhhhhhhccCCcHHHHHhhhcccccccchhhhhhhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCc
Q 000124 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDT 1211 (2138)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~ 1211 (2138)
|++||+.|++|....|++||||||+||+.+.++.+. .++.+|++|..|+.+
T Consensus 1256 ---------------------------L~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~--~a~~ALvkL~kd~is 1306 (2102)
T PLN03200 1256 ---------------------------LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH--AAIGALIKLSSGNPS 1306 (2102)
T ss_pred ---------------------------HHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhH--HHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999888 999999999999999
Q ss_pred chhHH--hhcchhHHHHHHhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchHhHHHHHHhhh
Q 000124 1212 NKLIM--AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289 (2138)
Q Consensus 1212 ~~~~~--~e~~~l~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l 1289 (2138)
++..| +|+|+|+.++||||.+|++++|+++++||++||+|+++|..+.+.+||.+||.+|..+++.+.+.|.++|++|
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99999 6999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccccccchHhhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHH
Q 000124 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369 (2138)
Q Consensus 1290 ~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a 1369 (2138)
++.|+.|+..++|+++.|+|.++.++++..+|.|++||+|+ +++++.++.+||++|+++.+|.+|+. ||.++|+.++
T Consensus 1387 c~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl--~~~~~~v~~Emv~~G~~~kllllLQ~-c~~~lkekAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKL--GKDRPPCKLDMVKAGIIERVLDILPE-APDSLCSAIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHH--hCCChHHHHHHHHhCHHHHHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCcccccCccc---------------------------------------------cchhhhhhhhhcCChhH
Q 000124 1370 ELCFIMFGNAKIIANPIA---------------------------------------------SECIQPLISLMQSDLSI 1404 (2138)
Q Consensus 1370 ~l~~~l~~~~~i~~~~~a---------------------------------------------~~~~~pli~l~~s~~~~ 1404 (2138)
||||+|+||+.|+++|+| ++.|+|||+||+|+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~ 1543 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQA 1543 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHH
Confidence 999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchhhhhHhhccccchhHHHHHHHHHHHhhcCCCchhHHHHhhhhHhHHhhhC---
Q 000124 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL--- 1481 (2138)
Q Consensus 1405 ~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~~~~~--- 1481 (2138)
+||.++++|+||+..|+||+++.+++||.|||+++++++.++||+|++||++++..||| +++++|||++++|++
T Consensus 1544 vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~---~v~~~ggv~~l~~~~~~~ 1620 (2102)
T PLN03200 1544 VQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPK---AVADAGGIFELSKVILQA 1620 (2102)
T ss_pred HHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHH---HHHHccCHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -CCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCCCcCchhHHHHHHHHHHhhcCCccccccccCcccch
Q 000124 1482 -PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVI 1560 (2138)
Q Consensus 1482 -~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i 1560 (2138)
||+|+.||+++|.|| +|+++++++|||+|++.++|+|.+++.|+||.+|+++|. ++|+.|+++++.|+++|+|
T Consensus 1621 d~~~~~~l~~~a~~vl-----~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~-~~~~~d~~~~~~~~~~g~i 1694 (2102)
T PLN03200 1621 DPQPPHALWESAASVL-----SNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALL-VLERDDSSSAEQMAESGAI 1694 (2102)
T ss_pred CCCCchhhHHHHHHHH-----HHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHH-HHHhcchhHHHHHHHhhhH
Confidence 999999999999999 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHh--------------h--ccch-----------
Q 000124 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLA--------------G--IGIL----------- 1613 (2138)
Q Consensus 1561 ~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~pl~~~~--------------~--~~~~----------- 1613 (2138)
|+|+++||| |||||+++||||.||||+|+|++|+|||||+||+|.. . .|=+
T Consensus 1695 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (2102)
T PLN03200 1695 EALLELLRS--HQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTD 1772 (2102)
T ss_pred HHHHHHHHh--ccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhccchhhhhhhhccC
Confidence 999999999 9999999999999999999999999999999999853 1 1211
Q ss_pred ------------------hhHHHHHHHHHHH---hhhhhhHHhhcCCceeeeheecccCCCCC-------------h---
Q 000124 1614 ------------------NLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPP-------------H--- 1656 (2138)
Q Consensus 1614 ------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 1656 (2138)
..|--||-||++. |.+=-++||++|||.-+-..+.-.||+-. |
T Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200 1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence 1233456666654 55666899999999988777877777643 2
Q ss_pred -----------------hhHHhHH----------HHHhhhhccCccceeechHHHHHHHhhhhhhhhHHHHhhhHhhhcc
Q 000124 1657 -----------------SLWESAA----------LVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709 (2138)
Q Consensus 1657 -----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1709 (2138)
+||-++. .++.|.=|+...---+.-++-||--|.|+.|.+=--||++|..+-.
T Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1932 (2102)
T PLN03200 1853 EYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQEAALDTLFLLRQ 1932 (2102)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4565554 3455543333333344567889999999999999999999988765
Q ss_pred cCcC------hHHHHHHhhhHHHHHHHHhhc--ccchhHHhHHHHHhcccccccccc
Q 000124 1710 TDAS------SAEQMTQAGVIDALLDLLRSH--QCEETSGRLLEALFNNGRIRQMKV 1758 (2138)
Q Consensus 1710 ~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2138)
+=+. -++.|+-+-||--|--|.|+- +-.|-+.-|+|-|.-.-+||=.+.
T Consensus 1933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a 1989 (2102)
T PLN03200 1933 SWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRG 1989 (2102)
T ss_pred hhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeec
Confidence 5444 366788888888887788872 224778889998887776664443
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=293.13 Aligned_cols=414 Identities=19% Similarity=0.211 Sum_probs=349.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhc--cchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRR--EVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~--s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
...++..+.+.+...|..+...++.+... ++.....| ..|.+|.+++.+. ..++.+|..|+|+|.|++.+..+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi-~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVI-QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHH-HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 45567777888888899999888877654 23334444 5599999999997 55689999999999999998888889
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-hHHHHHHHHHHHHHHhh
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAA 589 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-evq~~Aa~AL~nLs~~~ 589 (2138)
.++++|++|.+++++.+++..++++|.|+|+|++.++...|..+.+.|++++|+.++...++ ...+++.|+|.||++..
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999887776 78899999999999763
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~ 669 (2138)
+ ..+. -+.++ ..++.|..++++.++++...|+|++.+|+.+..
T Consensus 227 ~-------------P~P~------------------~~~v~------~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 N-------------PSPP------------------FDVVA------PILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred C-------------CCCc------------------HHHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 2 1111 11222 258999999999999999999999999999899
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-cCCHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDAAETAVAAL 748 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~AL 748 (2138)
+....+++.|+++.|+.+|...+..++..|.++++|+..+. |.+.+.+++.|+++.|..++. +....++++|++++
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998743 378899999999999999999 45566999999999
Q ss_pred HHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCch
Q 000124 749 ANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2138)
Q Consensus 749 aNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~ 827 (2138)
.|++. +++....+++.|.+|.|+++|..++.++|++|+|+++|++.... .+....+...|.++++.++|...+. +
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~--~ 422 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDV--K 422 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCCh--H
Confidence 99976 66778899999999999999999999999999999999998754 4455566778899999999954433 3
Q ss_pred hHHHHHHHHHHHhhcccCCcccC-CcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 828 DVADALEVVALLARTKQGLNFTY-PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~-~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
....++.++.++-...+....-. ..+....+..++++.+..+..+++..+..+|..++.+++.++
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 48888999988875322111100 344445567788999999999999999999999999999865
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=271.88 Aligned_cols=432 Identities=19% Similarity=0.188 Sum_probs=362.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
..+..++...++.+.++.+|..+..++++++-+ .+++..|++.+|+.+|+.-+.++...+|..++.+++||+.. +++|
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccch
Confidence 345677888899999999999999999999988 57888899999999999988888889999999999999985 8899
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
..+...|++.+|.++-++.+..+|+++.++|.|++. ..++|+.++..|++|.|+.+++++++++|+.++.+++|++-+.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 999999999999998888999999999999999986 7788888899999999999999999999999999999997431
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc--ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA--ANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~--~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.+ ++.+. ++..+++|+.++.++++.+|-.|..+|.||++
T Consensus 240 ---------------------~~-----------------Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas- 280 (550)
T KOG4224|consen 240 ---------------------RA-----------------RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS- 280 (550)
T ss_pred ---------------------HH-----------------HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-
Confidence 11 11122 23479999999999999999999999999998
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC-HHHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVA 746 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s-~~Vr~eAl~ 746 (2138)
+.+....+++.|.+|.+++++++..-........|+.|++. .+ .+..-|.+.|+++||+.+|..++ ++++-.|..
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi--hp--lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI--HP--LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc--cc--CcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 88999999999999999999988877777788899999986 33 56667899999999999999855 569999999
Q ss_pred HHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCC
Q 000124 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMN 825 (2138)
Q Consensus 747 ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~ 825 (2138)
+|.||+. +...+..|.+.|++|++..++.++.-.+|.....|++.|+.+ +..+......|.++.|+..+.+. .
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----d~~k~~lld~gi~~iLIp~t~s~--s 430 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----DNDKEALLDSGIIPILIPWTGSE--S 430 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc----cccHHHHhhcCCcceeecccCcc--c
Confidence 9999998 566788899999999999999999999999999999999986 44555666678888888888544 4
Q ss_pred chhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccc
Q 000124 826 GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSS 905 (2138)
Q Consensus 826 ~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~ 905 (2138)
...+-.|+.+|+++++..+...+..-+|.... .+--..|.+++.+..-.+++-|.-.+..+..++..++..|+.+...
T Consensus 431 ~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i~~~dd 508 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFIQSSDD 508 (550)
T ss_pred hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHHhCchh
Confidence 45588999999999976544333333343222 2223456677777777789999999999999987789999988777
Q ss_pred cHHHHHHHHhc
Q 000124 906 SIGALADRIMH 916 (2138)
Q Consensus 906 ~i~~La~~il~ 916 (2138)
-| .+++.++.
T Consensus 509 ii-~~~~~~~~ 518 (550)
T KOG4224|consen 509 II-ELLNDIVA 518 (550)
T ss_pred HH-HHHHHHHH
Confidence 76 56666553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=262.91 Aligned_cols=416 Identities=16% Similarity=0.181 Sum_probs=341.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhh-ccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~-~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
+-|..-+-+.+.+.|..+..-++.+-+ ....--..+++.|.+|.+++++ +....-.+..|+|+|.|+++........+
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 344455556677788888877776544 3233345566899999999999 45566678899999999999777777778
Q ss_pred HhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh--hHHHHHHHHHHHHHHhhc
Q 000124 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~--evq~~Aa~AL~nLs~~~e 590 (2138)
++.|++|.++++|.+++.++++++.|+|+|++-+++..|..+.+.|++.+++.++.+..+ ...+++.|+|.||++..+
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 899999999999999999999999999999999999999999999999999999988766 678999999999986522
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
..++- ..+. .+++.|..++.+.++++.-.|+|++..|+.+..+
T Consensus 234 -------------P~P~w------------------~~is------qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 234 -------------PPPDW------------------SNIS------QALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred -------------CCCch------------------HHHH------HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHH
Confidence 11110 0111 2488888999999999999999999999998899
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN 750 (2138)
....+.+.|..+.|+++|.+.+..++..|.+.++|+..+. |.+.+.++.+|+++.+..+|.++...++++||+++.|
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC---ccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 9999999999999999999999999999999999998743 3677889999999999999999999999999999999
Q ss_pred hhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000124 751 LLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2138)
Q Consensus 751 La~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~ 829 (2138)
+.. +.+..+.+++.+.+|+|+++|...+-.+|+.|||++.|.........++.+...++|.+++|.++|...+... .
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki--i 431 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI--I 431 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc--h
Confidence 965 6677788999999999999999999999999999999998876555667777888999999999997554432 4
Q ss_pred HHHHHHHHHHhhcccC----CcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 830 ADALEVVALLARTKQG----LNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 830 ~~AL~ALa~La~~~~~----~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
.-++.++.+.-+-.+. ..+-.+.....-+.++.++.+..|..+.+..+.++|..|+.+++++.
T Consensus 432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 5557777766542111 00101122333345788999999999999999999999999999765
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=276.57 Aligned_cols=396 Identities=17% Similarity=0.228 Sum_probs=341.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcC---chhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGN---IFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n---~~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
+.++..+.+.+.. .+..+..++..+... +.+...+.. |.++.++..+.. .++.+|..|+++|.++++++.+.-.
T Consensus 69 ~~~~~~~~S~~~~-~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 69 ELMLAALYSDDPQ-QQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 3444555555544 577777777777543 445555555 899999999974 5599999999999999999888888
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCH-HHHHHHHHHHHHHhcCC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHS 547 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~-~vre~Aa~aL~nLs~~s 547 (2138)
.+++.|.+|.+++++.+++..+++.|+|+|+|++.+++..|..+...|++++|+.++...+. ...+.+.|+|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999988765 78899999999999977
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+....+-.-..++|.|..++++.++++...++|+|.+|+..+ +.+.++.|+++|...+..++..+.+++|++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 543333334678999999999999999999999999999653 467899999999999999998899999986
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
. ...|.....+...|+++.|..++. +..+.+|..|+|++.||+.++++...++.+.|.++.|+.+|..++-+.|++
T Consensus 307 v---tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 307 V---TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred e---eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 4 445555666889999999999998 456669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------C---chHHHHHHhcCcHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------D---PDIAAEVLLEDVVSA 769 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~------~---~e~r~~Ii~~g~L~~ 769 (2138)
|+||+.|++.+... ++-..+++.|+|++|+++|...+.++...++.+|.|+.. . ......|.+.|++.+
T Consensus 384 AawaIsN~ts~g~~--~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 384 AAWAISNLTSSGTP--EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHhhcccCCH--HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 99999999985444 677789999999999999988999998899999999943 1 445677899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..+-.+.+.++..+|...+.+.-..
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999877664
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=262.32 Aligned_cols=394 Identities=22% Similarity=0.235 Sum_probs=340.9
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
..++++ .++.+.+.. ++..+..++++++-+.+++..+.+..|+.+|+.-+-....++|..++.++.+++.- ++++..
T Consensus 86 s~epvl-~llqs~d~~-Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVL-ALLQSCDKC-IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVK 162 (550)
T ss_pred hhhHHH-HHHhCcchh-hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhh
Confidence 333444 455555554 88889999999998888888888889999998888888899999999999999988 688999
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
|...|++.++.++-++++..+|.++..+|.|++. +.++|..++.+|++|.||.++++++.++|..++.++.|++. ...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~ 240 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRR 240 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHH
Confidence 9999999999999999999999999999999997 78999999999999999999999999999999999999998 456
Q ss_pred HHHHHHHcC--CcchhhhccccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 550 IRACVESAG--AVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 550 ~r~~I~e~G--aI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
.|+.+++.+ .++.|+.++.++++.++-.|..+|.|++.+. +.+.+|.+++|+++..-..-....-|+++++
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis 320 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS 320 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence 677777777 9999999999999999999999999999774 4688999999998765444344455676665
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
-..-+ ...+.++|++++||.++..+ ++++|-.|...|+||+.+...++..+.+.|+++.|..++.|+.-.++..-
T Consensus 321 ihplN----e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 321 IHPLN----EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred cccCc----ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 32111 22478899999999999987 56799999999999998888899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh------cCcHHHHHHH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL------EDVVSALTRV 773 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~------~g~L~~LV~L 773 (2138)
..|+..|+. . |..|..+.+.|+++.|+.+..+.+.+++.+|+.+|.||+.+.+.-..+++ +|.-..|+++
T Consensus 397 sac~a~Lal--~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rf 472 (550)
T KOG4224|consen 397 SACIAQLAL--N--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARF 472 (550)
T ss_pred HHHHHHHHh--c--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999986 3 36788899999999999999999999999999999999998776544432 5666788999
Q ss_pred HhCCCHHHHHHHHHHHHHhhhcC
Q 000124 774 LAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 774 L~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+.+....++.-+.|.+.+|..+.
T Consensus 473 l~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 473 LASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=238.40 Aligned_cols=398 Identities=16% Similarity=0.178 Sum_probs=322.7
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhc---CchhHHHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhhhccchhhH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~---n~~~~~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
|-|..-+-+.+.+ .+..+..-+..+.+ ++.+ ..+...|+++.++.++. ....-.+-+|+++|.+++++....-.
T Consensus 74 p~lt~~l~SdDie-~q~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 74 PQLTQQLFSDDIE-QQLQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred HHHHHHHhhhHHH-HHHHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 3344334343333 44455554555433 2333 34567889999999995 45566788999999999998777777
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH 546 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~ 546 (2138)
.+++.|++|.++++|.+.+..+++.++|+|+|++..++..|..+...|++.+++.++.+.- -.+.+.+.|+|.||+..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 7889999999999999999999999999999999988999999999999999999998774 47789999999999885
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGH 618 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~ 618 (2138)
...-...-.-..++|.|.+++.+.++++...|+|++.+++..+ +.+..+.|+++|..++..++.-+.+.+++
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 4332222222457899999999999999999999999998664 35667889999999999999999999988
Q ss_pred HHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 619 La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+..- .|.....+...|+++.+-.+|.+..+.+|..|+|.+.|++.++.+....+++.+.+|+|+.+|...+-.+|++
T Consensus 312 IVTG---~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 312 IVTG---SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred eeec---CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 7543 3333455788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----------Cc-hHHHHHHhcCc
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----------DP-DIAAEVLLEDV 766 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-----------~~-e~r~~Ii~~g~ 766 (2138)
|+||+.|...+...-++.-..++..|++.||.++|...+..+-+-++.++.|+.. ++ .....+.+.|+
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Agg 468 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGG 468 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhccc
Confidence 9999999987433333555578899999999999998777777777888888743 11 12345667999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..+..+-.+.+..+-.+|-.++...-..
T Consensus 469 md~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 99999999999999999998888766543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-17 Score=213.01 Aligned_cols=373 Identities=16% Similarity=0.153 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
+..-+...|.|++.+..+...+...+++++|++++.+++.+....++.+|.+++.. .+++..+.+.|.++.|.+++.++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC
Confidence 44566677999999999999999999999999999999999999999999999998 67899999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
+...+..++++|.||+. +++.|..+++.|.+|.|+.+|.++ ..+..+..+|++|+. .+..|..+...++++.++++
T Consensus 344 ~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999 688999999999999999999764 456778999999998 56788899999999999986
Q ss_pred cc-cCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 567 LK-SGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 567 Lk-S~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
+- .+++++.......+.|++.++. .+.++.|++......+ ......+++++.... ..+..+ .+.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~---~~k~~f--~~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDG---PLKELF--VDF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCc---hHHHHH--HHH
Confidence 54 4567777788899999987742 3567777777655433 234567788775432 122222 346
Q ss_pred hhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCcccc
Q 000124 639 LRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTT 715 (2138)
Q Consensus 639 I~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--s~~Vk~~AA~ALanLa~s~~~~d~ 715 (2138)
+..|+.++..+ +++..-.+.++|+||...+.+....+.+.+.++-+...|..+ .+++..++...++.++. . +.
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d--~~ 567 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--D--PE 567 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--C--HH
Confidence 88888888765 778889999999999875555555566679999999999876 45788889999999886 2 25
Q ss_pred hhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHh-cCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 716 NKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 716 ~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
....+.+.|.++.|+.+|++ .|++..-+.+.++..|..+++.|..++. .+++..|+.++++.++++|+-|-.+|-=+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66678899999999999987 5788899999999999999999998765 67888999999999999999999999877
Q ss_pred hhcC
Q 000124 793 LKHF 796 (2138)
Q Consensus 793 ~~~~ 796 (2138)
+...
T Consensus 648 ~e~d 651 (708)
T PF05804_consen 648 AEYD 651 (708)
T ss_pred HHhC
Confidence 7654
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=208.69 Aligned_cols=522 Identities=16% Similarity=0.151 Sum_probs=376.7
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc---CCHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks---~~~evr~~Aa~~L~~Ls 112 (2138)
.-+..+...||.+=. +..+|..+...+..|++.+++-..++.. .-.+.+|...|+. .+.+...+.+.+...+|
T Consensus 120 a~~~~~d~yiE~lYe---~~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYE---DIPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345677888888743 3456888889999999999777777765 6788999999976 36788889999998888
Q ss_pred cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhH
Q 000124 113 KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVV 190 (2138)
Q Consensus 113 ~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V 190 (2138)
...+....+.+...-..-++++..+ -.+....-+......+.. .+..++.+-+ ....+-.++.. ++ .+
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~----~~~~~~~~~~--~~kk~~~l~~k---Qe-qL 265 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEE----KPEAKKDYEK--ELKKLQTLIRK---QE-QL 265 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc----chhhhhhHHH--HHHHHHHHHHH---HH-HH
Confidence 7777666666554434444555442 111111111111111110 1111111111 12333344432 23 35
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC
Q 000124 191 QGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270 (2138)
Q Consensus 191 ~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~ 270 (2138)
...+...|.|++.+.... ..|.+.|+++.|+++|.+.+.++...++.+|.+|+ ...+++..+.+.|+++.|.+++.+
T Consensus 266 lrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s- 342 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPS- 342 (708)
T ss_pred HHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcC-
Confidence 567889999999876444 67889999999999999999999999999999999 455678889999999999999985
Q ss_pred CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhh
Q 000124 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGE 350 (2138)
Q Consensus 271 sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~e 350 (2138)
.+...+..+..+|.||+++ ++.|..++..|++|.|+.++.++. .+..++..|
T Consensus 343 ~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iL---------------- 394 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN-----------FREVALKIL---------------- 394 (708)
T ss_pred CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHH----------------
Confidence 4568899999999999995 999999999999999999887654 222333333
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh
Q 000124 351 LSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH 430 (2138)
Q Consensus 351 lL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e 430 (2138)
.+++.+++.+..+..
T Consensus 395 -----------------------------------------------------------------y~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 395 -----------------------------------------------------------------YNLSMDDEARSMFAY 409 (708)
T ss_pred -----------------------------------------------------------------HHhccCHhhHHHHhh
Confidence 333333444455566
Q ss_pred hchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchh
Q 000124 431 AEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 431 ~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.++++.++.++.. +++.++..++..+.+++.+ +.+...+.+.+|++.|++.. +..++ .....++|++.|.+..
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 6778888886544 5566777888899999988 57778888889999988755 33332 2346899999976565
Q ss_pred HHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccC--ChhHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG--GPKGQDASAMALTKL 585 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~--~~evq~~Aa~AL~nL 585 (2138)
+..+. +.+..|+.++..+ +++....+.++|+||+..+......+.+.+.+|-|..++..+ .+++.-.++..++.+
T Consensus 485 k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 485 KELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 55443 4788888888776 788899999999999987667778888889999999988765 357888899999998
Q ss_pred HHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHH
Q 000124 586 IRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2138)
Q Consensus 586 s~~~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa 658 (2138)
+.++ +.+.++.|+.+|+...++ .+.+...+..+-....+++.....+.+.+++..|+.++++.+.++|..|-
T Consensus 563 a~d~~~A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d 641 (708)
T PF05804_consen 563 ASDPECAPLLAKSGLIPTLIELLNAKQED-DEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD 641 (708)
T ss_pred HCCHHHHHHHHhCChHHHHHHHHHhhCch-HHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence 8764 357899999999753321 23344444444444555666666677788999999999999999999999
Q ss_pred HHHHHHhhcChhhhhhh
Q 000124 659 SVLADLFSMRQDICGSL 675 (2138)
Q Consensus 659 ~ALanL~s~~~e~r~~I 675 (2138)
.+|--++..+++-...+
T Consensus 642 ~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 642 NALDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHHHhCHHHHHHh
Confidence 99998888666555444
|
|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-17 Score=168.26 Aligned_cols=113 Identities=19% Similarity=0.424 Sum_probs=100.9
Q ss_pred ceEEEEEecccccccc--------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNLKQT--------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
|+|.|+|++|.||... -|..||||++.+ ++..+||++++++.||+|||+|+|.+.++ .++.|.|+||+++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~-~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE-CCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecC
Confidence 8999999999999532 267899999999 55777899999999999999999999765 6899999999999
Q ss_pred CCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2082 TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2082 ~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
.++.+.+|++.|++.++..+|....+|+|.+. ++|+.+ ++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~~~---~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV--KSGRLH---LKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCC--CCceEE---EEEeC
Confidence 99778899999999999999999999999987 566665 99999
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=168.26 Aligned_cols=101 Identities=16% Similarity=0.322 Sum_probs=88.3
Q ss_pred ceEEEEEecccccccc-cCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2010 GCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
|.|.|+|++|.|++.. +|+.||||++.+ ++.+.||||+++ +.||+|||+|+|.+.++ .+.|+|+|||++.||+ +
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~l-g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRV-GHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEE-CCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCc
Confidence 8999999999999332 599999999999 555557999976 79999999999998753 5789999999999998 6
Q ss_pred ccceEEEEecceeecce-ecceeecCCC
Q 000124 2087 TLGKVTIQIDKVVTEGV-YSGLFNLNHD 2113 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~-~~~~~~l~~~ 2113 (2138)
.+|++.|+|.+.+.+|+ +.++|+|.+.
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~ 106 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGK 106 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCc
Confidence 89999999987777775 8999999886
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=190.57 Aligned_cols=420 Identities=20% Similarity=0.166 Sum_probs=301.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000124 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 126 ~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~ 205 (2138)
-+|..+.+|.+.++.++..|+.-|..+|.+ +...+..+-+-|+|+.|+.++.+.+ ..++.+|+++|+||.-+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg----d~~ik~~vrqlggI~kLv~Ll~~~~---~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG----DNKIKSRVRQLGGIPKLVALLDHRN---DEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh----hHHHHHHHHHhccHHHHHHHhcCCc---HHHHHHHHHHHHhhhccc
Confidence 467888899998999999999999999983 6678899999999999999999877 459999999999999987
Q ss_pred Cc--hhHHHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC---------C--
Q 000124 206 DG--YWRATLEAGGVDIIVGLLSS-DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN---------N-- 271 (2138)
Q Consensus 206 e~--r~~aI~e~GGI~~Lv~lL~s-~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~---------s-- 271 (2138)
.. ++-.|.+++||+.+++.|.. .+.++++.+..+|+||+.. +.....+...++..|..-+-.. .
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 76 88899999999999999986 5789999999999999954 3334444444555555443211 1
Q ss_pred --CHhHHHHHHHHHHHHhhcCHHHHHHHHh-cCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHH-H
Q 000124 272 --DISVRASAADALEALSSKSIKAKKAVVA-ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV-Y 347 (2138)
Q Consensus 272 --d~~vr~~Aa~aL~nLs~~s~e~Rk~i~e-~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~-~ 347 (2138)
+..+-..+..+|+|+++.+.+.|+.+.+ .|.++.|+..+..-. ..+.+.+...++|+|.|.|++..+...++ .
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i---~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAI---QKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHH---HhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 2456678999999999988999999988 688999999886411 12334444778999999999865543321 0
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC--CChhHHHHHHHHHHHHhhcCchhH
Q 000124 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP--HDNKLVQERVLEAMASLYGNIFLS 425 (2138)
Q Consensus 348 L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s--~~~e~vr~~Aa~AL~~L~~n~~~~ 425 (2138)
....+.+... +.. ..... ...+ .+....+. .+.+.+ .+-....++...
T Consensus 462 ~~~~~~~~~~----------------~~~--~~~~~---~~~g---cf~~k~~k~~~~~~~~------~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 462 YRQVLANIAR----------------LPG--VGPPA---ESVG---CFGFKKRKSDDNCDDL------PIPERATAPKGS 511 (717)
T ss_pred hhhHhhcccc----------------ccc--CCCcc---cccc---cccchhhhchhccccc------CCcccccCCCCc
Confidence 0000000000 000 00000 0000 00000000 000000 000011223344
Q ss_pred HHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhhhccc----hhhHHh-hhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 426 QWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREV----GIWEAI-GKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls~~s~----~~~~~I-~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.++++...+++.+.++. +.+..+.+.++.+|.+++.... ..+..+ .++.|.+++++++..+++.+.+.++.+|+
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 56777777887666665 4568889999999999987532 233334 77889999999999999999999999999
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhC------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CCh
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGP 572 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~------d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~ 572 (2138)
||+. +..++..|- .++++.|++.|..+ +.++...++.+|.|+...+-.+.+.+.+.++++.|+.+.++ .++
T Consensus 592 Nls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 592 NLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSP 669 (717)
T ss_pred hhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCH
Confidence 9998 566766554 78999999999754 37888999999999997777777778889999999998877 456
Q ss_pred hHHHHHHHHHHHHHHhh
Q 000124 573 KGQDASAMALTKLIRAA 589 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~ 589 (2138)
...+.|...|..|....
T Consensus 670 k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887663
|
|
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=164.95 Aligned_cols=115 Identities=20% Similarity=0.439 Sum_probs=98.8
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
|.|.|+|++|.|| .+..|+.||||++.+ .+..++|+++++ ++||.|||+|.|.+..+ .++.|.|+||+++.+|.+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~-~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRI-GGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEE-CCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCc
Confidence 8899999999999 556789999999999 567778999866 79999999999998765 679999999999998889
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
.+|++.+++.+++..+....+|.|.+.....| .+.+++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G---~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAG---EVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCCcEee---EEEEEEEC
Confidence 99999999999998888999999987633334 44477654
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=163.82 Aligned_cols=112 Identities=23% Similarity=0.408 Sum_probs=96.9
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
+|+|+|++|+||. +..|..||||++.+++ +..+|||++++|+||+|||+|.|.+..+ ..++|.|+||++++++.+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCc
Confidence 5899999999994 4468999999999964 3456799999999999999999999865 778999999999999889
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.+|++.+.++++..++++...|+|.+. +. +.+.|||.
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~--~~---g~l~~~~~ 116 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ--GK---EELEVEFL 116 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC--CC---ceEEEEEE
Confidence 999999999999999999999999887 34 44446653
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-15 Score=186.57 Aligned_cols=378 Identities=18% Similarity=0.193 Sum_probs=274.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch--hHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD--SKWA 511 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e--~r~~ 511 (2138)
.+-.+.++.+.++.+|.+|+..+.++|+.+...+..+.+.|||+.|+.++.+.+.+++..|+++|.||...+.. ++..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 44567778889999999999999999999888899999999999999999999999999999999999986654 8999
Q ss_pred HHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc
Q 000124 512 ITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e 590 (2138)
+.+.++++.++++|+. .|.++++..+++|+||+.+ |..+..+. ..++..|.. -...+.
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~-------------------~vI~P~ 373 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTD-------------------NVIIPH 373 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHH-------------------hhcccc
Confidence 9999999999999986 6999999999999999985 65555544 223333322 111110
Q ss_pred hhhH-HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC------CCHHHHHHHHHHHHH
Q 000124 591 SATI-NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS------SNEENQEYAASVLAD 663 (2138)
Q Consensus 591 ~~aI-~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks------~s~evre~Aa~ALan 663 (2138)
.++- ++.. -+..+..+...+..||++++.. ..+..+..-...|.|.+|+..+++ .+....|+++.+|.|
T Consensus 374 Sgw~~~~~~--~~~~~~~vf~n~tgcLRNlSs~--~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRN 449 (717)
T KOG1048|consen 374 SGWEEEPAP--RKAEDSTVFRNVTGCLRNLSSA--GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRN 449 (717)
T ss_pred cccCCCCcc--cccccceeeehhhhhhccccch--hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhh
Confidence 0000 0000 1111233444556666665432 233444444567888999887763 267788899999999
Q ss_pred HhhcCh--------------------------------hhhh---------------------hhhhCCCHHHHHHHhc-
Q 000124 664 LFSMRQ--------------------------------DICG---------------------SLATDEIVNPCMRLLT- 689 (2138)
Q Consensus 664 L~s~~~--------------------------------e~r~---------------------~Ive~GaV~~Lv~LL~- 689 (2138)
|...-. ..++ .+....+|.+-+.++.
T Consensus 450 LSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~ 529 (717)
T KOG1048|consen 450 LSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL 529 (717)
T ss_pred cCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH
Confidence 875211 0000 0222334555455554
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCc-ccchhhhH-HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcH
Q 000124 690 SNTQMVATQSARALGALSRPTKT-KTTNKMSY-IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2138)
Q Consensus 690 dgs~~Vk~~AA~ALanLa~s~~~-~d~~r~~I-~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L 767 (2138)
+.++.+.+.++.||.|++.+... .+..+..+ .++.+.++|+++|+.++++|...++.+|.||+.|+.++..|. .+++
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~ 608 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAI 608 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchH
Confidence 45778899999999999984433 23455555 788899999999999999999999999999999999998887 7899
Q ss_pred HHHHHHHhCCC------HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 768 SALTRVLAEGT------SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 768 ~~LV~LL~~~~------~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+.|+++|.+.. +++-..++..|.|+...+ -....+....+++++|+.+..+ ..+......|-..|..|-.
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~---~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN---VLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh---HHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence 99999998763 578889999999999764 3344455567789999999976 4444555566556665543
|
|
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-16 Score=163.75 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=92.4
Q ss_pred ceEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccc
Q 000124 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLG 2089 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g 2089 (2138)
|.|.|+|++|.||+++ |+.||||+|.++ +.+.+|++++++ ||+|||+|.|.++++ ++.|+|+||||+.++.|.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g-~~k~kT~v~~~~-nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAP-DKFNTYVTLKVQ-NVKSTTIAVRGS-QPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCC-CCCCCeEEEEEC-CEEeEeeECCCC-CCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCceE
Confidence 6799999999999987 999999999993 444579999885 999999999999875 45599999999999999999
Q ss_pred eEEEEecceeeccee--cceeecCCC-CCCCCCc
Q 000124 2090 KVTIQIDKVVTEGVY--SGLFNLNHD-NNKDSSS 2120 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~--~~~~~l~~~-~~~~~~~ 2120 (2138)
+|.|.|.+|...... -.+|+|.++ ++|||++
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 999999999987666 788999876 4567764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=162.14 Aligned_cols=118 Identities=21% Similarity=0.449 Sum_probs=101.3
Q ss_pred ceEEEEEeccccc--ccc--cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-C
Q 000124 2010 GCLTVTIKRGNNL--KQT--MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-G 2084 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~ 2084 (2138)
|+|.|+|++|.|| .+. .|..||||++.+ ++.+.+|+++++++||.|||.|+|.+.+ |.++.|.|+||+++.+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~-~~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV-GAQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE-CCEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCC
Confidence 8999999999999 344 689999999999 5677789999999999999999999987 4789999999999988 5
Q ss_pred CcccceEEEEeccee---ecceecceeecCCCCCC--CCCccceEEEEEe
Q 000124 2085 KSTLGKVTIQIDKVV---TEGVYSGLFNLNHDNNK--DSSSRTLEIEIIW 2129 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~---~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~w 2129 (2138)
.+.+|++.|.|+++. ..+.....|.|.+.... ....+.+.+++.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 688999999999998 34667889999877211 2357777799999
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=162.17 Aligned_cols=119 Identities=20% Similarity=0.380 Sum_probs=102.3
Q ss_pred EEEEEecccccccccCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccccc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KSTLG 2089 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~~g 2089 (2138)
|.|+|++|.||....|.+||||++.+++ +.++||+|++++.||+|||+|.|.+. |.++.|.|+||+++.++ .+.||
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~--~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS--PNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC--CCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999954778999999999953 45568999999999999999999873 46889999999999986 67999
Q ss_pred eEEEEecceeecceecceeecCCCCCC-CCCccceEEEEEecCC
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNNK-DSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~w~~~ 2132 (2138)
++.|.++++........+|+|.+..++ .+..+.+.++++|.+-
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999998888999999976433 3457888899999764
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=161.17 Aligned_cols=99 Identities=26% Similarity=0.413 Sum_probs=90.4
Q ss_pred EEEEEecccc---c--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC---
Q 000124 2012 LTVTIKRGNN---L--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF--- 2083 (2138)
Q Consensus 2012 l~v~v~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~--- 2083 (2138)
|.|+|++|.| | ++..|++||||++.+ .+.+.+||++++++||+|||+|.|.+.++ .+.|+|+||+++.+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE-CCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 8999999999 6 566799999999999 55566799999999999999999999876 35999999999887
Q ss_pred ----CCcccceEEEEecceeecceecceeecCCC
Q 000124 2084 ----GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ----~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+.||++.|+|..+..++++..+|+|.+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~ 112 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL 112 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC
Confidence 899999999999999999999999999977
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=156.65 Aligned_cols=99 Identities=26% Similarity=0.495 Sum_probs=89.1
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCccc
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~ 2088 (2138)
+|+|+|++|.||. +..|+.||||++++ +|.++||++++++.||+|||+|.|.+.+| ..+.|.|+|+++++ .+.+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTV-GKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEE-CCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCcc
Confidence 4899999999993 44589999999999 56777899999999999999999999875 78899999999987 7899
Q ss_pred ceEEEEecceeecc--eecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEG--VYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~--~~~~~~~l~~~ 2113 (2138)
|++.|.|+++.... .++++|+|.+.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999999864 78999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=160.16 Aligned_cols=115 Identities=23% Similarity=0.410 Sum_probs=95.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCC----CCCCeEEEEEeecCCCC-
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP----PKGQKLHIICKSKNTFG- 2084 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~----p~~~~l~~~~~~~~~~~- 2084 (2138)
+.|+|++|.|| ++..|..||||++.+ ++.++||||+++++||+|||+|.|.+... |.++.|.++||++++||
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l-~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL-GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE-CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 47999999999 566789999999999 56777899999999999999999998764 57889999999999997
Q ss_pred CcccceEEEEeccee--ecceecceeecCCCCCCCCC-ccceEEEE
Q 000124 2085 KSTLGKVTIQIDKVV--TEGVYSGLFNLNHDNNKDSS-SRTLEIEI 2127 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~--~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 2127 (2138)
.+.+|++.|.|.++. .++....+|+|.+..+++++ .+.+.+.+
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 578999999999998 56788899999875333332 34444544
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=157.34 Aligned_cols=117 Identities=18% Similarity=0.323 Sum_probs=101.2
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKSTL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.++.....+|+++++++||.|||+|+|.+.++ .+.|.++|||++.+ +.+.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcce
Confidence 78999999999 466799999999999433555799999999999999999998764 68999999999998 56789
Q ss_pred ceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|++.|.+..+...+....+|+|.+. +++++.|.+.+.+.-+|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~-~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDP-NSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCC-CCccCceEEEEEEEECC
Confidence 9999999999999999999999988 33567777778876554
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-15 Score=156.78 Aligned_cols=112 Identities=18% Similarity=0.323 Sum_probs=95.5
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceE
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKV 2091 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~ 2091 (2138)
|.|+|++|.||... ..||||++.+ .+..+||||+++|.||+|||+|.|.+.++ ..+.|.++||++++++.+.+|++
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l-~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKL-GNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEE-CCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceeeeE
Confidence 89999999999777 8999999999 45777899999999999999999998765 78999999999999999999999
Q ss_pred EEEecceeecce-----ecceeecCCCCCCCCCccceEEEEE
Q 000124 2092 TIQIDKVVTEGV-----YSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2092 ~~~~~~v~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.|.|+++..++. .+.+|+|.+..+ +...+.+.+.++
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~ 118 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVW 118 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEE
Confidence 999999987553 678999998832 334454445554
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-15 Score=155.07 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=98.7
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
+++|+|++|.|| .+..|.+||||++.+ ++.++||+++++++||.|||+|.|.+.++ .++.|.|+||+++.++ .+.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL-GNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE-CCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCe
Confidence 589999999999 444688999999999 67778899999999999999999998765 6899999999999984 689
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|++.++|+++..++....+|.|.+. .|+++ +++.|+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~---~G~~~---~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG---EGSLL---LLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC---CcEEE---EEEEec
Confidence 99999999999999999999999876 36654 777775
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-15 Score=162.01 Aligned_cols=93 Identities=28% Similarity=0.574 Sum_probs=84.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
=|+|.|+|++|.|| +|.-++.||||+|++ ++.+-||+||++|+||+|||+|+|.+.|| |..|.+.|+|+|+| .-
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l-g~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL-GNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE-CCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 49999999999999 777799999999999 67777899999999999999999999999 99999999999999 88
Q ss_pred cccceEEEEecceeeccee
Q 000124 2086 STLGKVTIQIDKVVTEGVY 2104 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~ 2104 (2138)
|.||+++|.|-.++..+..
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 9999999999877664443
|
|
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-15 Score=159.90 Aligned_cols=107 Identities=19% Similarity=0.357 Sum_probs=92.4
Q ss_pred CCceEEEEEeccccccc---ccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEe-e
Q 000124 2008 LPGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICK-S 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~-~ 2079 (2138)
-.|.|+|+|++|.||.. ..|..||||++.+..++ +|||||+++++||.|||+|.|.+. +.+..|.|+|| +
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d 104 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGD 104 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeC
Confidence 35899999999999943 44789999999995443 557999999999999999999988 68999999999 4
Q ss_pred cCCC-CCcccceEEEEecceeecceecceeecCCCCCC
Q 000124 2080 KNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNK 2116 (2138)
Q Consensus 2080 ~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~ 2116 (2138)
.+.| .++.||.|.|.|+++-..+....+|.|.++++-
T Consensus 105 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 105 YGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 6766 567899999999999888899999999998443
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-15 Score=155.52 Aligned_cols=118 Identities=20% Similarity=0.366 Sum_probs=98.5
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc-ccc
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS-TLG 2089 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~-~~g 2089 (2138)
.|.|+|++|.||..+ +..||||++.+++...+||++ ++++||.|||+|.|.+ .+|..+.++|+|++++.++|+ .+|
T Consensus 5 ~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~-~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDD-LPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEec-CCCCcCEEEEEEEECCCCCCCCeEE
Confidence 499999999999775 899999999994333357997 5789999999999974 355667999999999999765 699
Q ss_pred eEEEEecceeecceecceeecCCCCC-CCCCccceEEEEEecC
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNN-KDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~w~~ 2131 (2138)
++.|+|.++...+....+|+|.+.+. +++..+.+.+.+.+..
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999999999999998743 4555577778888764
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-15 Score=155.60 Aligned_cols=115 Identities=23% Similarity=0.496 Sum_probs=99.7
Q ss_pred EecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCCCC-cccceEEE
Q 000124 2016 IKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTFGK-STLGKVTI 2093 (2138)
Q Consensus 2016 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~~k-~~~g~~~~ 2093 (2138)
|++|.||.+..|++||||++.+ +|.+++|||++++.||+|||+|.|.+..++ .++.|+++||+++.+++ +.+|++.+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~-~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTF-RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEE-CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 6788999777799999999999 777889999999999999999999998774 68999999999999876 88999999
Q ss_pred EecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2094 QIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2094 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.++++..+++...+|+|.+.+++. .-+.+.+++.+.+-
T Consensus 81 ~l~~l~~~~~~~~~~~L~~~~~~~-~~~~l~l~~~~~~~ 118 (127)
T cd08373 81 SLQDLVSEGLLEVTEPLLDSNGRP-TGATISLEVSYQPP 118 (127)
T ss_pred EhhHcccCCceEEEEeCcCCCCCc-ccEEEEEEEEEeCC
Confidence 999999999999999998873332 23566677777664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-15 Score=154.22 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=96.7
Q ss_pred ceEEEEEeccccccc--c-cCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-
Q 000124 2010 GCLTVTIKRGNNLKQ--T-MGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG- 2084 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~- 2084 (2138)
|.|.|+|++|.||.. . -|..||||++.++. .+.++|++++++.||.|||.|.|.+. +.++.|.++||+++.++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCEEEEEEEecCCCCC
Confidence 899999999999963 2 24689999999955 26678999999999999999999887 57999999999999884
Q ss_pred CcccceEEEEecceeecceecce-eecCCCCCCCCCccceEEEEEecC
Q 000124 2085 KSTLGKVTIQIDKVVTEGVYSGL-FNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
.+.+|++.+.+.++...+...+. +.+..+ .| ..+.+.+.++|-|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~-~k--~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRN-GK--PVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcC-Cc--cceEEEEEEEeCC
Confidence 57899999999999999888754 444433 22 2466669999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-12 Score=147.96 Aligned_cols=364 Identities=18% Similarity=0.179 Sum_probs=271.2
Q ss_pred HHHHHHHHHHH---HhcHHHHHHHhhhcCcHHHHHHHHhc---CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH
Q 000124 59 ELITMRILTIA---KAKKEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS 132 (2138)
Q Consensus 59 e~AL~~L~~L~---~~~d~ak~lI~~~aGgVp~LV~LLks---~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~ 132 (2138)
++...+|.+++ +.+..++-.-.+ .|..+.++-++.. ++..+..+++.+|..+ ...++.+.+..+...++.
T Consensus 77 ~E~s~ll~~l~d~ck~~~A~r~la~~-~ga~~~~it~~~la~~~~~~~l~ksL~al~~l---t~~qpdl~da~g~~vvv~ 152 (461)
T KOG4199|consen 77 EETTELLEQLADECKKSLAHRVLAGK-NGAHDALITLLELAESPNESVLKKSLEAINSL---THKQPDLFDAEAMAVVLK 152 (461)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcc-CCCcchhhhHHHHhhCCchhHHHHHHHHHHHh---hcCCcchhccccHHHHHH
Confidence 34444555554 333345555555 7888888877754 3445555566665554 455667788899999999
Q ss_pred hhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhH
Q 000124 133 LLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210 (2138)
Q Consensus 133 LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~ 210 (2138)
+|.. ++.++.....+.+..-|. ..+.+|+.|++.++.+.+.+.|...++. .+...+.++++-|...++-|..
T Consensus 153 lL~~~~~~~dlt~~~~~~v~~Ac~----~hE~nrQ~~m~~~il~Li~~~l~~~gk~--~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 153 LLALKVESEEVTLLTLQWLQKACI----MHEVNRQLFMELKILELILQVLNREGKT--RTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHhcccchHHHHHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHcccCcc--HHHHHHHHHHHHhcCCCceeee
Confidence 9987 578888888888888886 3678899999999999999999877654 3566788899988887765411
Q ss_pred HHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcC
Q 000124 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKS 290 (2138)
Q Consensus 211 aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s 290 (2138)
+ ...-.+| +.+...|.+..|+..++.+-++........+|..++.+
T Consensus 227 f------------------g~ah~hA---------------r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr- 272 (461)
T KOG4199|consen 227 F------------------GQAHGHA---------------RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR- 272 (461)
T ss_pred c------------------chhhHHH---------------HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-
Confidence 0 0111111 33444556777777776565667777888999999995
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000124 291 IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2138)
Q Consensus 291 ~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~ 370 (2138)
++.++.+.+.||++.|+.++.+....- .++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~--------~r~------------------------------------------ 302 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQG--------NRT------------------------------------------ 302 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhh--------HHH------------------------------------------
Confidence 899999999999999999876633110 000
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc--cCCHHH
Q 000124 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT--MATADV 448 (2138)
Q Consensus 371 ~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~--sss~ev 448 (2138)
.-..++..|..++++++++..+.+.+|.+.++.++. ++++.+
T Consensus 303 ------------------------------------l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~V 346 (461)
T KOG4199|consen 303 ------------------------------------LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLV 346 (461)
T ss_pred ------------------------------------HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHH
Confidence 113344456677888889999999999999988764 467888
Q ss_pred HHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCc--hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh
Q 000124 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2138)
Q Consensus 449 q~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d--~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk 526 (2138)
...++.++..+|...++....+++.|+-...++.++... ..+|++|++.++|+..++.+++..+... +++.|+..-+
T Consensus 347 i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~ 425 (461)
T KOG4199|consen 347 IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAK 425 (461)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHH
Confidence 889999999999998999999999999999999987654 4589999999999999888887777665 6888998888
Q ss_pred hCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 527 AGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 527 s~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
..++..+..+..+|+.|+++.......
T Consensus 426 ~~h~tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 426 ANHETCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred hcCccHHHHHHHHHHhcCcchhhHHHh
Confidence 889999999999999999965544433
|
|
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-15 Score=156.33 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=88.2
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
-|.|+|+|++|.|| .+ .|..||||++.+..++ ++||||+++++||.|||+|.|.+...-.+++|+|+||+++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 47799999999999 55 4889999999996543 33699999999999999999988665567899999999988
Q ss_pred CC--CcccceEEEEecceeecceecceeec
Q 000124 2083 FG--KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2083 ~~--k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
++ ++.||++.|.|.+++..+.++++|+|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 74 57899999999999988889999987
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-15 Score=155.00 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeee--cCCCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAF--DVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+ .|..||||++.+.. ..++||||+++++||.|||+|.|.+ .+-+....|+++||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 78999999999999 55 58999999999953 3455799999999999999999976 2223678999999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.|+ .+.+|.|.|.|.++...+....+|+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9996 57799999999999988888999987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=155.91 Aligned_cols=108 Identities=21% Similarity=0.445 Sum_probs=90.7
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|.|+|++|.|| .+..|..||||++.+ .+...+|+|+++|.||.|||+|.|.+.++ ..+.|.|+||+++.|+ .+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~-~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSM-GSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEE-CCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCCCCC
Confidence 8899999999999 456799999999999 55667899999999999999999999765 6799999999999987 57
Q ss_pred ccceEEEEecceee-----cceecceeecCCCCCCCCCcc
Q 000124 2087 TLGKVTIQIDKVVT-----EGVYSGLFNLNHDNNKDSSSR 2121 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~-----~~~~~~~~~l~~~~~~~~~~~ 2121 (2138)
.+|++.|+|.+++. .+.+..+.+|.+- ..|.++
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~--~~g~i~ 130 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEV--PTGEVV 130 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccc--cceeEE
Confidence 99999999999997 5555555565322 336554
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-14 Score=152.15 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=96.8
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.+ +|..++|+++++++||+|||+|+|.+.++ ..+.|.|+||+++.+|+ +.+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFY-NGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEE-CCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 79999999999 445578899999999 56677899999999999999999999876 47899999999999976 779
Q ss_pred ceEEEEecceeecceecceeecCCCCCC----CCCccceEEEE
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNK----DSSSRTLEIEI 2127 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~ 2127 (2138)
|+|.+.|.++...+....+|.|.+..++ ++..|.|.+.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999988889999999986433 33445555544
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=151.14 Aligned_cols=113 Identities=19% Similarity=0.342 Sum_probs=93.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC---c
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK---S 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k---~ 2086 (2138)
|.|+|++|+|| .+..|..||||++.++....+||+|+++++||+|||+|+|.+.. ++.|.|+||++++||+ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999 46678999999999954556679999999999999999999953 8999999999999975 6
Q ss_pred ccceEEEEecceeeccee-cceeecCCCCC-CCCC-ccceEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVY-SGLFNLNHDNN-KDSS-SRTLEIEI 2127 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~-~~~~~l~~~~~-~~~~-~~~~~~~~ 2127 (2138)
.+|++.|++++++..+.. ..+|.|.+... .+|. +|.+.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 899999999999876655 77899966621 1333 56666655
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=151.45 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=84.6
Q ss_pred ceEEEEEeccccc-ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCcc
Q 000124 2010 GCLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~ 2087 (2138)
|.|.|+|++|.|| .+..|..||||++.+ .|..+||||++++.||+|||+|.|....++.+++|.|+||+++++ ..+.
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~-~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~ 106 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFF-GGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDL 106 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEE-CCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCe
Confidence 8999999999999 456689999999999 577888999999999999999999866666899999999999999 5667
Q ss_pred cceEEEEecceeecceecceeecC
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+|++.+.|...+.| ..|++.
T Consensus 107 IG~~~i~l~~~~~~----~~~~~~ 126 (127)
T cd04032 107 LGTCSVVPEAGVHE----DSCQLN 126 (127)
T ss_pred eEEEEEEecCCcee----eeeecC
Confidence 99999999977765 445543
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-13 Score=171.27 Aligned_cols=372 Identities=16% Similarity=0.167 Sum_probs=279.1
Q ss_pred HHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCc
Q 000124 175 TLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN---AAAQSNAASLLARLMLAFGDSI 251 (2138)
Q Consensus 175 ~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s---~evq~~A~~aL~nLs~~~~e~r 251 (2138)
.|+.++.... .+...+.+..+++..+. +..++..|+++.|+++|..++ .+.+..+-.+|+||....++..
T Consensus 201 sllsml~t~D------~ee~ar~fLemSss~es-CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDD------EEEMARTFLEMSSSPES-CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCC------HHHHHHHHHHhccCchh-hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 4555554433 33456778888776654 488999999999999998754 5688899999999998777766
Q ss_pred chhhccchHHHHHHHh----------cc------CCCHhHHH-HHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCc
Q 000124 252 PTVIDSGAVKALVQLV----------GQ------NNDISVRA-SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 252 ~~l~~~GaL~~LL~LL----------~s------~sd~~vr~-~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
....+..++..|=++. +. +....-+. .|..+|..++++ .+.|+.|.+-||++.|-+++.-..
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6555555554443322 21 11113344 567777888885 999999999999888888553211
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
+ .+| +... .
T Consensus 353 -~--------------------mhg---------------------------------------p~tn-d---------- 361 (2195)
T KOG2122|consen 353 -E--------------------MHG---------------------------------------PETN-D---------- 361 (2195)
T ss_pred -H--------------------hcC---------------------------------------CCCC-c----------
Confidence 0 000 0000 0
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhh-hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchh-hHHhh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSH-AEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIG 471 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e-~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~-~~~I~ 471 (2138)
...-.+|.++..+|.|| +++..++..+.. .++++.+|..+.+..+++++..+..|+||++.-+.+ +..+.
T Consensus 362 -------~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 362 -------GECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred -------HHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence 00012788889999999 666666666654 477999999999999999999999999999976555 45566
Q ss_pred hchhHHHHHHH-hcCCchhhHHHHHHHHHHHhhcCchhHHHHHh-cCCchHHHHHhhhC----CHHHHHHHHHHHHHHhc
Q 000124 472 KREGIQLLISL-LGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAG----SQKAREVAAHVLWILCC 545 (2138)
Q Consensus 472 e~ggIp~LV~L-L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~-aGaIp~LV~LLks~----d~~vre~Aa~aL~nLs~ 545 (2138)
+.|-+..|..+ +....+...+..+.+||||+.|+.+|+..|.+ .|++..||.+|... .-.+-+.+-++|.|.+.
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 67778777764 45667778889999999999999999999986 58899999999643 56778889999999865
Q ss_pred ---CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 546 ---HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 546 ---~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
..+.+|.++.+.+++..|++.|++++-.+..++|.+||||+.. +++
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR----------------~p~--------------- 563 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----------------SPE--------------- 563 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC----------------CHH---------------
Confidence 3677899999999999999999999999999999999999743 111
Q ss_pred hcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh
Q 000124 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 623 ~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~ 669 (2138)
-++.+.+.|++..|-.++++.+..+-+.++.+|.||..+.+
T Consensus 564 ------DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 564 ------DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred ------HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 13346778899999999999999999999999999988654
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=152.43 Aligned_cols=115 Identities=18% Similarity=0.366 Sum_probs=92.9
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCC--CCeEEEEEeecCCC--CC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPK--GQKLHIICKSKNTF--GK 2085 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~--~~~l~~~~~~~~~~--~k 2085 (2138)
|+|+|++|.|| .+..|..||||++.+ .+.++||+|+++++||.|||.|.|.+.+|+. ...|.|+||+++++ +.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~-~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDF-DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEE-CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 79999999999 455588999999999 5667789999999999999999999987653 47899999999988 58
Q ss_pred cccceEEEEecceee-cceecceeecCCCCCCCCCccceEEEE
Q 000124 2086 STLGKVTIQIDKVVT-EGVYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
+.||+|.|.+.++.. +..-..+|+|...+.++...+.+.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 123 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKV 123 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEE
Confidence 899999999999985 445577899986532333344333433
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-14 Score=157.10 Aligned_cols=120 Identities=19% Similarity=0.386 Sum_probs=97.1
Q ss_pred CCceEEEEEeccccccc--------------------------------ccCCCCceEEEEecCCCCccccccccCCCCC
Q 000124 2008 LPGCLTVTIKRGNNLKQ--------------------------------TMGTTNAFCRLTIGNGPPRQTKVVSHSISPE 2055 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~ 2055 (2138)
|=|.|-|+|.+|+||.+ ..|..||||++.+++....+|||++++.||+
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 44999999999999932 3366899999999433334799999999999
Q ss_pred ccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCC-ccceEEEEEe
Q 000124 2056 WKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS-SRTLEIEIIW 2129 (2138)
Q Consensus 2056 w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~w 2129 (2138)
|||+|.|.+.++ .+.|.+.|||++.+|.+.+|++.|.++++...+.+..+|+|.+.+.|.-+ ...|.+.++.
T Consensus 85 WnE~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 85 WNESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred cceEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988643 68999999999999999999999999999999999999999887344212 1234455543
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-14 Score=154.79 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=90.3
Q ss_pred EEEEEecccccccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCC----------C----CCCeE
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVP----------P----KGQKL 2073 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~----------p----~~~~l 2073 (2138)
|+|+|++|.||....|..||||++++..+ .+++|+|+++++||+|||+|.|.+..+ | ....|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 79999999999777799999999999543 455799999999999999999999522 2 23579
Q ss_pred EEEEeecCCC-CCcccceEEEEecceeec-ceecceeecCCCCCCC
Q 000124 2074 HIICKSKNTF-GKSTLGKVTIQIDKVVTE-GVYSGLFNLNHDNNKD 2117 (2138)
Q Consensus 2074 ~~~~~~~~~~-~k~~~g~~~~~~~~v~~~-~~~~~~~~l~~~~~~~ 2117 (2138)
.|+||+++.+ ..+.||++.|.|..+-.. +....+|.|.+..+++
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 9999999988 455799999999998887 7889999998876666
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=150.01 Aligned_cols=103 Identities=16% Similarity=0.369 Sum_probs=89.0
Q ss_pred ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeec-
Q 000124 2023 KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTE- 2101 (2138)
Q Consensus 2023 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~- 2101 (2138)
+.++|..||||++.+++...++|++++++.||+|||.|+|.+.++ ..+.|+|+|+++++++++.+|+|.++|.+++..
T Consensus 7 ~~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 7 ESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh
Confidence 456799999999999544566899999999999999999999876 689999999999999999999999999999874
Q ss_pred ceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2102 GVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+...++|+|.+. +.|+ +.++++|.|
T Consensus 86 ~~~~~w~~L~~~--~~G~---i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSGN--GQGR---IRISALWKP 110 (111)
T ss_pred hccceeEECCCC--CCCE---EEEEEEEec
Confidence 566899999874 4454 459999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-13 Score=172.74 Aligned_cols=364 Identities=17% Similarity=0.163 Sum_probs=283.2
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhccchhhHHh
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRREVGIWEAI 470 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s~~~~~~I 470 (2138)
.|..++...+. +.-.+.+..+..+++-+..+...+++++|+.++.-. +.+.+++|-.+|.++....++.+..-
T Consensus 201 sllsml~t~D~----ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE----EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH----HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 44445554443 445566777788888888899999999999998653 46788899999999988767665443
Q ss_pred hhchhHHHHHH----------HhcCC-------chhhHH-HHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC----
Q 000124 471 GKREGIQLLIS----------LLGLS-------SEQHQE-YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---- 528 (2138)
Q Consensus 471 ~e~ggIp~LV~----------LL~s~-------d~~Vr~-~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~---- 528 (2138)
.+...+..|-+ ++... ...-+. .|+..|.++++ ++++|..+.+.|++..+.+|+.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44444444332 22211 112333 67888888888 799999999999999999987421
Q ss_pred --------CHHHHHHHHHHHHHHhcCChhHHHHHH-HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000124 529 --------SQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2138)
Q Consensus 529 --------d~~vre~Aa~aL~nLs~~sd~~r~~I~-e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~ 599 (2138)
.-.+|+.+..+|.||+..+..++..+. ..|.++.+|..|.+...++..-.+.+|.||+-..+.+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n------- 428 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN------- 428 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc-------
Confidence 346799999999999997666665554 4789999999999988899999999999998654311
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.++.+.+.|-+..|+. .++..++.+......|||||+.+..++...+...
T Consensus 429 -----------------------------mKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV 479 (2195)
T KOG2122|consen 429 -----------------------------MKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV 479 (2195)
T ss_pred -----------------------------HHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc
Confidence 1222344556666666 3455677778889999999999889999888876
Q ss_pred -CCHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 679 -EIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 679 -GaV~~Lv~LL~dg----s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
|++..|+.+|... +-.+.+.|-..|.|++..+-..+..|+.+.+...+..|+..|++.+-.+..++|.+|+||+.
T Consensus 480 DGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 480 DGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred cchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 8899999999764 34578888899999887333334788889999999999999999999999999999999976
Q ss_pred -CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC
Q 000124 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798 (2138)
Q Consensus 754 -~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~ 798 (2138)
+++.++.+.+.|+++.|-.++++.|.++-+-++.+|.||....|.
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 888999999999999999999999999999999999999987654
|
|
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-14 Score=152.01 Aligned_cols=107 Identities=21% Similarity=0.391 Sum_probs=91.4
Q ss_pred hhhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCC-CCCeEE
Q 000124 2004 LLHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLH 2074 (2138)
Q Consensus 2004 ~~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~ 2074 (2138)
-|++-| |.|+|+|++|.|| .+..|..||||++.+.. ..++||+|+++++||+|||+|.|.+.... ....|+
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD 87 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence 355666 8999999999999 45568999999999954 34457999999999999999999986443 357999
Q ss_pred EEEeecCCC---CCcccceEEEEecceeecceecceeec
Q 000124 2075 IICKSKNTF---GKSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2075 ~~~~~~~~~---~k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
|.||+++.| .++.+|++.|.|+++...+..+.+|.|
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999999986 568899999999999998999999987
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-14 Score=149.75 Aligned_cols=105 Identities=23% Similarity=0.464 Sum_probs=91.3
Q ss_pred ceEEEEEeccccccc--ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc-
Q 000124 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS- 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~- 2086 (2138)
|.|.|+|++|.||.. ..|..||||++.+++.+..+|++++++.||+|||+|.|.+..+ .+.|.|+||+++.++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 899999999999943 5689999999999433556799999999999999999987654 68999999999999765
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
.+|++.+.|.+++.. ...++|.|.++ ++++
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~--~~~~ 108 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD--EEER 108 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC--Ccce
Confidence 899999999999876 88999999999 4444
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=151.04 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=87.9
Q ss_pred CceEEEEEeccccccc--c-cCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLKQ--T-MGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~--~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-|.|+|+|++|.||.. . .|..||||++.+.. ..+|||||+++++||+|||+|.|.+..+.+ +..|.++||++
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4789999999999943 2 37899999999943 345679999999999999999999866544 45899999999
Q ss_pred CCCCCc-ccceEEEEecceeecceecceeec
Q 000124 2081 NTFGKS-TLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+||+ .+|.|.|.|+++-..+.+.++|+|
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999775 799999999999999999999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-14 Score=147.77 Aligned_cols=101 Identities=26% Similarity=0.459 Sum_probs=88.6
Q ss_pred EEEEEecccccc--cc-cCCCCceEEEEecCCCCccccccccCCCCCc-cccceeeecCCCC-CCeEEEEEeecCCCCC-
Q 000124 2012 LTVTIKRGNNLK--QT-MGTTNAFCRLTIGNGPPRQTKVVSHSISPEW-KEGFTWAFDVPPK-GQKLHIICKSKNTFGK- 2085 (2138)
Q Consensus 2012 l~v~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w-~~~f~~~~~~~p~-~~~l~~~~~~~~~~~k- 2085 (2138)
|.|+|++|.||. ++ -|..||||++.++ +.++||+|+++++||+| ||+|+|.+..+.. .+.|.|+||+++.+|+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 689999999993 32 4778999999995 46778999999999999 9999999977654 5799999999999987
Q ss_pred cccceEEEEecceee---cceecceeecCCC
Q 000124 2086 STLGKVTIQIDKVVT---EGVYSGLFNLNHD 2113 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~---~~~~~~~~~l~~~ 2113 (2138)
+.+|++.+.+..++. +++++++|+|.++
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 579999999999999 5689999999874
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-14 Score=152.61 Aligned_cols=118 Identities=16% Similarity=0.290 Sum_probs=95.0
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~ 2086 (2138)
.|.|+|++|+|| .+..|++||||++.+ .+...|||++++ ++||+|||+|+|.+.+| ..+.|.|+|++++.+ +.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l-~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQL-GNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEE-CCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCC
Confidence 389999999999 677799999999999 456667999977 69999999999999775 678999999999886 678
Q ss_pred ccceEEEEecceeec----ceecceeecCCCCC-----CCCCc-cceEEEEEec
Q 000124 2087 TLGKVTIQIDKVVTE----GVYSGLFNLNHDNN-----KDSSS-RTLEIEIIWS 2130 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~----~~~~~~~~l~~~~~-----~~~~~-~~~~~~~~w~ 2130 (2138)
.||+|.|.|.++..+ .....+|.|.+.+. |+.+. +.+.+.+.-.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 899999999998643 34789999998742 22222 4455665544
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=146.51 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=93.9
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcc
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~ 2087 (2138)
++|.|+|++|+||. +..|..||||++.+ .|.+.+|+|+++++||+|||.|.|.+.++ +..|.|+||+++.++.+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC-EGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEE-CCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCCCCCCc
Confidence 57999999999994 45689999999999 56777899999999999999999988754 789999999999999999
Q ss_pred cceEEEEecceeecceecceeecCCCC--CCCCCccceEEEEE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDN--NKDSSSRTLEIEII 2128 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 2128 (2138)
+|++.+.+... .+....+|+|.... .++...|.+.|++.
T Consensus 80 lG~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~ 120 (126)
T cd04046 80 LGQATLSADPN--DSQTLRTLPLRKRGRDAAGEVPGTISVKVT 120 (126)
T ss_pred eEEEEEecccC--CCcCceEEEcccCCCCCCCCCCCEEEEEEE
Confidence 99999999864 45666889995321 23445565556654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-14 Score=150.28 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=85.4
Q ss_pred CceEEEEEeccccc--cccc-CCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+.. |+.||||++.+..+. +|||||+++++||+|||+|.|.+...-+ +..|++.||++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 37899999999999 3333 889999999995443 5579999999999999999998754333 45999999999
Q ss_pred CCC-CCcccceEEEEecceee-cc--eecceeecC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVT-EG--VYSGLFNLN 2111 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~-~~--~~~~~~~l~ 2111 (2138)
+.| +.+.||.|.|.|.++-. ++ +...+|+|+
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 988 55799999999999944 33 788888874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=146.31 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=92.0
Q ss_pred EEEEEecccccccc---cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-cc
Q 000124 2012 LTVTIKRGNNLKQT---MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~ 2087 (2138)
|.|+|.+|.||..+ .|..||||++.+++...+||||++|++||.|||+|+|.+.+. ...|++.||+++.|++ +.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCCCCCCce
Confidence 78999999999543 367899999999544456899999999999999999998643 5799999999999855 77
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIE 2126 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 2126 (2138)
+|+|.|.|.++-..+....+|+|.+..+..+..+.+.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~ 118 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLE 118 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEE
Confidence 999999999999999999999999863333333433343
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-14 Score=148.60 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=87.1
Q ss_pred CceEEEEEeccccc--cccc-CCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCC-CeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~ 2080 (2138)
.|-|.|+|++|.|| .+.. |+.||||++.+..+. ++||||+++++||+|||+|.|.+....+. ..|.++||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 36799999999999 5544 789999999995433 45799999999999999999988654344 5899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+.+++ +.||.+.|.|.++-..+....+|.|.
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99976 58999999999998888888888873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-14 Score=151.82 Aligned_cols=109 Identities=24% Similarity=0.445 Sum_probs=91.3
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
|+|.|+|++|.|| .+. +..||||++.+ .+.++||+|+++|.||+|||+|.|.+.+| .+.+.++||++++|++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~-g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL-GNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE-CCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 8999999999999 566 88999999999 56777899999999999999999999877 8899999999999975 7
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.||++.+.+.+++...+. +++.+. ++|. + |. +|-|-
T Consensus 78 ~iG~a~i~l~~l~~~~~~---~~~~~~--~~~~-~---~~-~~~~~ 113 (145)
T cd04038 78 SMGEAEIDLEPLVEAAKL---DHLRDT--PGGT-Q---IK-KVLPS 113 (145)
T ss_pred EEEEEEEEHHHhhhhhhh---hccccC--CCCE-E---EE-EEecC
Confidence 899999999999876555 345554 4444 2 33 67654
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=157.21 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=206.1
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
-++.|..+|.+.+..+|..++.+|..+.. ...++.+..++++.++.+|..++++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 46789999999999999999999998874 24677888889999999999999999999752211
Q ss_pred HHcCCcchhhhc-cccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000124 555 ESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2138)
Q Consensus 555 ~e~GaI~aLv~L-LkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~ 630 (2138)
...+++.|..+ +++.++.++..++.+|+++.... ....+..+...+.+++..|+..+..+|+.+
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------- 155 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------- 155 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----------
Confidence 12356667766 67889999999999999996432 234577788888999999999999998754
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
....+++.|+.++++.++.+|..|+.+|.++...+ ..+++.|+.+|.+.++.+|..|+++|+++..
T Consensus 156 ---~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 ---NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred ---CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 22346999999999999999999999999984322 3567889999999999999999999999753
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh-CCCHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRAL 789 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~-~~~~~Vr~~Aa~AL 789 (2138)
+ .++++|++.|.+++ ++..++.+|+++. .+.++|.|.+++. +.++.++.+|.++|
T Consensus 222 ~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig----------~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 K------------RVLSVLIKELKKGT--VGDLIIEAAGELG----------DKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred h------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC----------CHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2 38999999999876 6778999999776 3468999999996 77999999999998
Q ss_pred HH
Q 000124 790 HQ 791 (2138)
Q Consensus 790 ~n 791 (2138)
..
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 54
|
|
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=143.54 Aligned_cols=114 Identities=22% Similarity=0.400 Sum_probs=92.3
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|.|+|++|.|| .+..|+.||||++.+ ++...+|++++++.||.|||+|.|.+.+ .++.++++||+++.++ .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~-~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL-VNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE-CCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCc
Confidence 8899999999999 455688999999999 5666789999999999999999999865 4799999999999875 56
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.+|++.++++++.. | ...+|+|.+...+.-..+.+.++++
T Consensus 78 ~iG~~~~~l~~~~~-~-~~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 78 FLGKVAIPLLSIKN-G-ERKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred eeeEEEEEHHHCCC-C-CceEEECcccCCCCceeeEEEEEEE
Confidence 79999999999753 3 3579999876322223455556654
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=143.50 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=77.7
Q ss_pred ceEEEEEeccccccc--cc----CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNLKQ--TM----GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
|+|.|+|++|.||.. .+ ++.||||++.+ ++...||+|++++.||+|||+|.|.+..+..+..|.++||+++.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~-~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE-CCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 899999999999943 22 34799999999 455667999999999999999999987766677999999999998
Q ss_pred CC-cccceEEEEecceee
Q 000124 2084 GK-STLGKVTIQIDKVVT 2100 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~ 2100 (2138)
|+ +.+|++.|.|.++..
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 55 779999999998765
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=146.45 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=95.4
Q ss_pred CCceEEEEEecccccc--cc----------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2008 LPGCLTVTIKRGNNLK--QT----------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
..|.|.|+|++|.||. +. .|..||||++.+++...++|++.+++.||+|||+|+|.+. -+..|+|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEEEE
Confidence 4799999999999994 32 2578999999995333357999999999999999999985 3589999
Q ss_pred EEeecCCCCC-cccceEEEEecceee--cceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2076 ICKSKNTFGK-STLGKVTIQIDKVVT--EGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2076 ~~~~~~~~~k-~~~g~~~~~~~~v~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|++++.+++ +.+|++.|.|+++.. .+....+|+|.+. | .+.+++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~----G---~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQ----G---KLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCC----c---EEEEEEEEec
Confidence 9999988864 799999999999998 5778999999754 4 5558889864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=143.88 Aligned_cols=93 Identities=24% Similarity=0.526 Sum_probs=78.7
Q ss_pred ceEEEEEeccccc--cccc-CCCCceEEEEecC-C-CCccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGN-G-PPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~-~-~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~ 2081 (2138)
|+|.|+|++|.|| .+.. |..||||++.+.. | ..+||+++++|+||+|||+|.|.+. ++ .++.|.++||+++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVT-PDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeC-chhccCCCEEEEEEEeCC
Confidence 8999999999999 4555 8899999999943 2 2347999999999999999999774 33 4578999999999
Q ss_pred CCCC-cccceEEEEecceeecce
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~ 2103 (2138)
.+++ +.+|++.|.+.++...++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~ 102 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIEDRN 102 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcCCC
Confidence 9975 899999999999985543
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=146.19 Aligned_cols=103 Identities=18% Similarity=0.409 Sum_probs=88.8
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEe--cCCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~ 2083 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ +++..+||++++++.||.|||+|.|.+...- .+..|.|+||+++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 48999999999999 456688999999999 3445567999999999999999999865331 356899999999998
Q ss_pred C-CcccceEEEEecceeecceecceeecC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+ .+.+|++.|.|.++...++...+|.|.
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEECc
Confidence 6 568999999999999989999999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=142.78 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=86.9
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecCCCCC-cc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~~~k-~~ 2087 (2138)
|.|+|++|.||. .|..||||++.+ .|.++||++++++.||.|||+|.|.+..|+ ..+.|.|+||+++++|+ +.
T Consensus 6 l~V~v~~a~~L~--~~~~dpyv~v~~-~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 6 VRVRVIEARQLV--GGNIDPVVKVEV-GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEcccCC--CCCCCCEEEEEE-CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 899999999999 489999999999 477888999999999999999999998775 35799999999999976 89
Q ss_pred cceEEEEecceeec---ceecceeecCC
Q 000124 2088 LGKVTIQIDKVVTE---GVYSGLFNLNH 2112 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~---~~~~~~~~l~~ 2112 (2138)
+|++.|.|.+|... +-+..+|+|.+
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999999775 55777788764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-13 Score=144.80 Aligned_cols=103 Identities=25% Similarity=0.462 Sum_probs=92.2
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCC--CCeEEEEEeecCCC-
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPK--GQKLHIICKSKNTF- 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~--~~~l~~~~~~~~~~- 2083 (2138)
|.|.|+|++|.||+ +..++.||||++.+ .+..++|+++++ +.||.|||+|.|.+.+++. .+.|.|+||+++.|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~-~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC-RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE-CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 78999999999994 45589999999999 566778999985 8999999999999998753 57899999999988
Q ss_pred CCcccceEEEEecceeecceecceeecCCC
Q 000124 2084 GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+.+|++.|+|.+++.+|...++|+|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 457899999999999999999999999987
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-13 Score=144.96 Aligned_cols=115 Identities=21% Similarity=0.419 Sum_probs=92.4
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCC------CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG------PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
+|.|+|++|.|| .+..|..||||++.+++. ..+||++++++.||+|||+|.|.+. |.++.|.++||+++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~--~~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN--PREHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc--CCCCEEEEEEEECCC
Confidence 489999999999 455789999999999533 1357999999999999999999874 457899999999999
Q ss_pred CC-CcccceEEEEecceeecceec------ceeecCCCCCCCCC-ccceEEEEE
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYS------GLFNLNHDNNKDSS-SRTLEIEII 2128 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~------~~~~l~~~~~~~~~-~~~~~~~~~ 2128 (2138)
+| .+.+|++.|.++++...++-. .+|.|.+- ++.|+ .|.|.+.+.
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~G~l~~~~~ 131 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-SSKSRVKGHLRLYMA 131 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-CCCCcceeEEEEEEe
Confidence 96 579999999999999876643 78898865 23333 455555554
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-13 Score=143.81 Aligned_cols=110 Identities=17% Similarity=0.433 Sum_probs=89.8
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-----
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF----- 2083 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~----- 2083 (2138)
-|+|+|++|+|| .+..|+.||||++.+ ++..++|+++++++||+|||+|.|.+..+ .+.|.|+||+++.+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~-~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV-GKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE-CCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 389999999999 466689999999999 45666899999999999999999988654 57899999999863
Q ss_pred -------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEE
Q 000124 2084 -------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEI 2125 (2138)
Q Consensus 2084 -------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 2125 (2138)
..+.+|++.|+++.+ .+....+|.|.+.+++....|.+.+
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~--~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ceeccccCCCcceEEEEEhHHc--cCCCCeEEECccCCCCCcEeEEEEE
Confidence 477999999999986 4777899999987444333444433
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-13 Score=144.29 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=87.3
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~ 2083 (2138)
.|.|.|+|++|+|| .+..|..||||++.+..+ ..+||+++++++||+|||+|.|.+..+.. +..|+++||+++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 48899999999999 455688999999999533 33479999999999999999999865433 56899999999998
Q ss_pred C-CcccceEEEEecceeecceecceeecC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+ .+.+|++.|.|.++........+|.|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 5 478999999999998888888888875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=152.42 Aligned_cols=254 Identities=18% Similarity=0.089 Sum_probs=203.8
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--chh
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSA 592 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e~~ 592 (2138)
.-.++.|..+|.+.+..+|..++..|..+.. ..+++.+..+++++++.+|..++++|+.+.... ...
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~ 90 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDN 90 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHH
Confidence 3467889999999999999999999998864 345667778889999999999999999996432 245
Q ss_pred hHHHHHHH-hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 593 TINQLLAL-LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 593 aI~~Li~L-L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
.++.|..+ +++.++.|+..++.+|+.+....... ...++..+...+.++++.+|..++.+|.++..
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY--------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 78888877 67888899999999999874221111 12246677788888899999999999987754
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
..+++.|+.+|++.++.+|..|+.+|+++.... ..+++.|+.+|.+.+.+|+..|+.+|+.+
T Consensus 158 ------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------------PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------------HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 457899999999999999999999999994311 23788999999999999999999999976
Q ss_pred hCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHH
Q 000124 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVAD 831 (2138)
Q Consensus 752 a~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~ 831 (2138)
. ...++|.|++.+.+++ ++..|+.+|++++.. .+++.|..++.. ..+...+..
T Consensus 220 ~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~-~~d~~v~~~ 272 (280)
T PRK09687 220 K----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYK-FDDNEIITK 272 (280)
T ss_pred C----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhh-CCChhHHHH
Confidence 4 3468999999998876 678899999998873 377889999862 235556778
Q ss_pred HHHHHH
Q 000124 832 ALEVVA 837 (2138)
Q Consensus 832 AL~ALa 837 (2138)
|.+++.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 877764
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-11 Score=139.48 Aligned_cols=326 Identities=13% Similarity=0.126 Sum_probs=244.3
Q ss_pred HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHH
Q 000124 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLM 244 (2138)
Q Consensus 167 IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs 244 (2138)
--..|..+.++.++...+..+..+...++.+|..+.... +.++++-|+..++.+|... +.++.......+..-|
T Consensus 100 a~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac 175 (461)
T KOG4199|consen 100 AGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKAC 175 (461)
T ss_pred hccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 334555555544443222233457778888888886643 5678888999999999753 5667777777888878
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHH----------HHhcCCHHHHHHhhcCCc
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA----------VVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~----------i~e~ggL~~LI~LL~s~s 314 (2138)
..++.+++.+++.++++.+...+.+.....+-+...++++.|..+ ++.|-. +...|++..|++
T Consensus 176 ~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~E------ 248 (461)
T KOG4199|consen 176 IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTE------ 248 (461)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHH------
Confidence 889999999999999999998886433335666778888888774 333321 121222222222
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
T Consensus 249 -------------------------------------------------------------------------------- 248 (461)
T KOG4199|consen 249 -------------------------------------------------------------------------------- 248 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHH----HHHHHHHHHHHhhhccchhhHHh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD----VREYLILSLTKLCRREVGIWEAI 470 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~e----vq~~Aa~aL~~Ls~~s~~~~~~I 470 (2138)
.+.-.-++.+-.....+|..++-+.++++.+.+.||+..+++++.+.+.+ .-+.++..|+.++.+ ++++..|
T Consensus 249 ---al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~I 324 (461)
T KOG4199|consen 249 ---ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTI 324 (461)
T ss_pred ---HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHH
Confidence 11111111244556667788888888999999999999999999885543 334566777788777 7899999
Q ss_pred hhchhHHHHHHHhc--CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcC
Q 000124 471 GKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 471 ~e~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~ 546 (2138)
++.||.+.++.++. +.++.+.+.++.+++.|+..++++...+++.|+-...++.++.. ...+++++++.++|+..+
T Consensus 325 V~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 325 VEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999884 66888999999999999998999999999999999999999876 567899999999999998
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+.+++..+.+ .+++.|+...++..+.+...+-.+|..|..+
T Consensus 405 s~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 405 SAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred hhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 8888888774 5688899888888888888888899888755
|
|
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-13 Score=142.83 Aligned_cols=102 Identities=23% Similarity=0.378 Sum_probs=87.4
Q ss_pred CceEEEEEecccccc--c-ccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--Q-TMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~-~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.||. + ..|..||||++.+..+ .++||+|++++.||+|||+|.|.+..+.+ +..|.|+||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 589999999999993 3 4589999999988433 34579999999999999999998865433 56899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeec
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+++ +.+|++.|.|.++...++.+.+|+|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 98865 6999999999999988999999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=141.31 Aligned_cols=114 Identities=20% Similarity=0.432 Sum_probs=91.8
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCC-ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
.|.|+|++|.|| .+..|..||||++.++ |.+ +||+++++++||+|||.|+|.+. +-.+.|.++||+++.+|+ +
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v~v~d~~~~~~d~ 77 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVD-NEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSFYVLDEDTLSRDD 77 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEEC-CEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEEEEEECCCCCCCC
Confidence 389999999999 5667899999999994 443 58999999999999999999874 335899999999999987 8
Q ss_pred ccceEEEEecceeecc-eecceeecCCCCCCCCCccceEEEE
Q 000124 2087 TLGKVTIQIDKVVTEG-VYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
.+|++.++++.....+ ....+|.|.+....++..+.+.+.+
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~ 119 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLEL 119 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEE
Confidence 9999999998887643 4788999987533334445444443
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=139.30 Aligned_cols=427 Identities=16% Similarity=0.112 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhh----hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSH----AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e----~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
++.+...+++....++--++.+.. .+.++.|.....+.+.++..+..++|+|.|.++.+++..+.+.||-+.+++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 667777777777655544444433 4556777777788889999999999999999999999999999996666666
Q ss_pred hc----CCc---hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhc-CChhHHH
Q 000124 483 LG----LSS---EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCC-HSEDIRA 552 (2138)
Q Consensus 483 L~----s~d---~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~-~sd~~r~ 552 (2138)
|+ ..+ .+.-..+.+.|.|....+.+.+..+++.|.++.|..++.-+ +....+.......||.. ..+....
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 64 223 23445566778888887888999999999999999988655 44444554444444432 1122233
Q ss_pred HHHHcCCcchhhhcccc-CChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHH---
Q 000124 553 CVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIRAA-------DSATINQLLALLLG-DSPSSKAHVIKVLGHVL--- 620 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS-~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~-~d~~V~~~A~~AL~~La--- 620 (2138)
+..+....-.+++++.+ .+++..+.+-..|...+.++ +.+....++.+++. .+...+.....-+...+
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHh
Confidence 33344455556676654 46777777778888777653 34556666666654 22222222211111111
Q ss_pred -hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-----cCCHH
Q 000124 621 -TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-----SNTQM 694 (2138)
Q Consensus 621 -~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~-----dgs~~ 694 (2138)
......|..+.....+..++.++..+.+.+......++.+++|++. +.++|-.+++.+.+..|+.++. +|+..
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 1123444555555555589999999999999999999999999999 8899999999999999999884 46778
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch-HHHHHH-hcCcHHHHHH
Q 000124 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD-IAAEVL-LEDVVSALTR 772 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e-~r~~Ii-~~g~L~~LV~ 772 (2138)
.+..+..||+|+.. |. .+|..+..+|++..++..++...+.++..-+..|..+....+ ...++. ....+..|++
T Consensus 377 ~qhA~lsALRnl~I--Pv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 377 RQHACLSALRNLMI--PV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred hHHHHHHHHHhccc--cC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 89999999999987 66 678889999999999999999999999999999988876544 444443 4557889999
Q ss_pred HHhCCCHH-HHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 773 VLAEGTSE-GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 773 LL~~~~~~-Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+..+.+-. +--..-+.|.-+..+... .++.-.+.+.|++..+|.++... +...+.+|+-+|..++.
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~-kdv~~tvpksg~ik~~Vsm~t~~--hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKY-KDVILTVPKSGGIKEKVSMFTKN--HINMQNEALVALLSTES 519 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHh-hhhHhhccccccHHHHHHHHHHh--hHHHhHHHHHHHHHHHH
Confidence 98877644 777788888888776432 33444555677899999999644 44558999999988774
|
|
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=144.54 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=91.2
Q ss_pred EEEEEecccccccc-cCCCCceEEEEecC---CCCccccccccCCCCCccccceeeecCCC--------------CCCeE
Q 000124 2012 LTVTIKRGNNLKQT-MGTTNAFCRLTIGN---GPPRQTKVVSHSISPEWKEGFTWAFDVPP--------------KGQKL 2073 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--------------~~~~l 2073 (2138)
|+|+|++|+||..+ .|..||||++.++. +..++|+++++++||.|||+|.|.+..+. ..++|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 68999999999654 68999999999964 56667999999999999999999988763 46799
Q ss_pred EEEEeecCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2074 HIICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2074 ~~~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+|+||+++.+ +.+.+|+|.|.|+++...|....+|.|.+.
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9999999998 566699999999999999999999999988
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-13 Score=142.38 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=86.0
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEec--CCCCccccccccCCCCCccccceeeec--CCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIG--NGPPRQTKVVSHSISPEWKEGFTWAFD--VPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~p~w~~~f~~~~~--~~p~~~~l~~~~~~~~~~ 2083 (2138)
+.|.|+|++|.|| .+..|..||||++.+. ++.+++|+|+++++||.|||+|.|..- +.+....|+++||++++|
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999 4446889999999993 445567999999999999999999631 223456899999999999
Q ss_pred CC-cccceEEEEecceeecceecceeecCC
Q 000124 2084 GK-STLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
|+ +.+|++.|.+.++-..+....+|.|.+
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 75 569999999999988888888888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-13 Score=141.40 Aligned_cols=101 Identities=21% Similarity=0.379 Sum_probs=82.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
+|.|.|+|++|.|| .+..|..||||++.+..+ ..+||++++++.||.|||+|.|.+-. ......|.++||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 38999999999999 456688999999999542 45579999999999999999997422 22568999999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.++ .+.+|++.|.|++....+ -..+|.|
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~~~~-~~~W~~L 124 (125)
T cd04031 95 DRDGENDFLGEVVIDLADALLDD-EPHWYPL 124 (125)
T ss_pred CCCCCCcEeeEEEEecccccccC-CcceEEC
Confidence 9886 478999999999944444 3577776
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=141.12 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=85.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCC----CC---ccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PP---RQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~---~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
|+|+|++|.|| ++. |..||||++.+ .| .+ +||||+++++||.|||+|.|.+.. -|....|++.||++
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l-~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNL-IGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEE-ecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 89999999999 444 88999999998 32 22 259999999999999999999853 34667899999999
Q ss_pred CCCCCc-ccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|++ .+|++.+.+.+|...|....+|.|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 977755 799999999999999999999999665
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-13 Score=148.49 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=87.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCC--CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVP--PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~--p~~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+..|..||||++.+. +...+||+|++++.||.|||+|.|..-.+ ..+..|.|+||++
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 38999999999999 4555889999999883 23455799999999999999999964211 1346899999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.|+ .+.+|+|.|.+.++..+|.-.++|.|.++
T Consensus 106 d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 106 DKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 9997 68899999999999988888888887765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-11 Score=165.50 Aligned_cols=275 Identities=20% Similarity=0.160 Sum_probs=224.6
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
..++.|+..|.+.++.+|..|+..|..+.. .+.++.|++.|+++++.+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 456788999999999999999999987642 345788999999999999999999998885411
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
...+.|...|.+.++.+|..++..|..+... ....|+..+++.++.++..|+.+|..+.
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~----- 742 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD----- 742 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc-----
Confidence 1235788889999999999999999987531 1235677889999999999999999863
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
..+.|..++.++++.|+..+..+|+.+... ....++.|..+++++++.+|..|+.+|.++...
T Consensus 743 -~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---- 805 (897)
T PRK13800 743 -DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---- 805 (897)
T ss_pred -CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----
Confidence 235688899999999999999998875311 122478899999999999999999999998651
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
...+..++..|++.++.+|..|+.+|+.+.. + ..++.|+.+|++++..||..|+.+|+.+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA--D------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc--c------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2234668899999999999999999998853 2 2679999999999999999999999987
Q ss_pred hCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 752 a~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
..++ ...+.|...+.+.+..||+.|.++|.
T Consensus 866 ~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 PGDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4333 35778889999999999999999985
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=141.89 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=94.4
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEe----cCCCCccccccccCCCCCccccceeeecCC-------CCCCeEEEE
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAFDVP-------PKGQKLHII 2076 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~-------p~~~~l~~~ 2076 (2138)
|-|+|...++.++ -...|+.||||++.| ++..++||+|+++|+||+|||+|.|.+... =....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3355555555555 233578999999998 444455799999999999999999998533 114679999
Q ss_pred EeecCCCC--CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2077 CKSKNTFG--KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2077 ~~~~~~~~--k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
||+++.|. .+.||+|.|.|+++..+..+.+.|+|.+. +...-+.|+++++=.+-.+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~--~k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG--RKATGGKLEVKVRLREPLT 141 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC--CCCcCCEEEEEEEecCCCc
Confidence 99999983 59999999999999999999999999865 4455577778877655443
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-13 Score=143.83 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=87.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-+|.|+|+|++|.|| .+..|..||||++.+.. ...+||+|+++++||+|||+|.|.+..+.. ...|.++||++
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 369999999999999 45568899999999953 334579999999999999999998875433 46899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+++ +.+|+|.|.++. .+.+...+|.+.+.
T Consensus 91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 98865 789999999986 45567788988877
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-13 Score=140.58 Aligned_cols=111 Identities=18% Similarity=0.385 Sum_probs=94.9
Q ss_pred hcCCceEEEEEecccccc--cccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEee
Q 000124 2006 HCLPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKS 2079 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~ 2079 (2138)
.--+|.|+|+|++|.||. +..|..||||++.+.. ...++|++++++.+|.|||+|.|.+..+...+.|.++||+
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 344699999999999994 3457899999999953 2455799999999999999999998876677899999999
Q ss_pred cCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2080 KNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2080 ~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
++.++ .+.+|++.+.|+++.. +....+|.|.+. |+|.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~-~~~~~w~~L~~~--~~~~ 126 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQ--EEGE 126 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCc-CccCceEECcCc--cccc
Confidence 99885 5799999999999985 478899999998 7775
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=140.93 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=82.5
Q ss_pred eEEEEEeccccc-ccccCCCCceEEEEecCC------------CCccccccccCCCCCc-cccceeeecCCCCCCeEEEE
Q 000124 2011 CLTVTIKRGNNL-KQTMGTTNAFCRLTIGNG------------PPRQTKVVSHSISPEW-KEGFTWAFDVPPKGQKLHII 2076 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~t~~~~~~~~p~w-~~~f~~~~~~~p~~~~l~~~ 2076 (2138)
+.+|++++|.|| ++..|++||||++.+..| +.+||+|+++++||+| ||+|.|.+. .+|.|.|+
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~---~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL---PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC---CCCEEEEE
Confidence 478999999999 666799999999999543 3567999999999999 999999883 57999999
Q ss_pred EeecCCCC----CcccceEEEEecceeecceecc---eeecCCC
Q 000124 2077 CKSKNTFG----KSTLGKVTIQIDKVVTEGVYSG---LFNLNHD 2113 (2138)
Q Consensus 2077 ~~~~~~~~----k~~~g~~~~~~~~v~~~~~~~~---~~~l~~~ 2113 (2138)
|||+++.| ++.+|++.|++.+++..+.--+ .|.|.-.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99987654 5999999999999986643322 3666644
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-10 Score=135.89 Aligned_cols=433 Identities=15% Similarity=0.122 Sum_probs=309.3
Q ss_pred CCHHHHHHHHHHHHHhhhccchhhHHh----hhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCch
Q 000124 444 ATADVREYLILSLTKLCRREVGIWEAI----GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP 519 (2138)
Q Consensus 444 ss~evq~~Aa~aL~~Ls~~s~~~~~~I----~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp 519 (2138)
.+..+......+++..+.+ +..+..+ +..+.+++|.+..++++.++.....++|+|+|..+.++|..+.+.||-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 3455556666666666644 2222222 3467789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC-------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc--cCChhHHHHHHHHHHHHHHh--
Q 000124 520 PLVQLLEAG-------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK--SGGPKGQDASAMALTKLIRA-- 588 (2138)
Q Consensus 520 ~LV~LLks~-------d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk--S~~~evq~~Aa~AL~nLs~~-- 588 (2138)
.+++.|+.. +.+.-..+.+.|.|...++++.++.+.+.|.++.|..... ..+....+.......|+..-
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 999988743 2355567778999999999999999999999998876553 34445555555444444322
Q ss_pred -------hchhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHH----
Q 000124 589 -------ADSATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQE---- 655 (2138)
Q Consensus 589 -------~e~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre---- 655 (2138)
.+......+.+++... .+++++...+.+... ..+|.++-.+++.|.+..++.+++. .+..-++
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~----aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA----AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH----hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 1345566777777643 345566665555544 3445566667889999999998876 2211122
Q ss_pred ---HHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh
Q 000124 656 ---YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2138)
Q Consensus 656 ---~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L 732 (2138)
.++....-|..++............++.+...+++++......++-+++|+++ .|..+..+++.+.+..|+++
T Consensus 289 l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR----~D~~ci~~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 289 LFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR----RDDICIQLVQKDFLNKLISC 364 (604)
T ss_pred HHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc----cchHHHHHHHHHHHHHHHHH
Confidence 23333333333344444333334478888889999999999999999999998 34788889999999999999
Q ss_pred hhc-----CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhh
Q 000124 733 AKT-----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ 807 (2138)
Q Consensus 733 L~s-----~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~ 807 (2138)
+.. ++.+++.+++.||.||.--..++..+...|....+...+....|.+..+-...+..+...+ +.+.-+..
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q---e~~a~eL~ 441 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ---EYIACELA 441 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch---HHHHHHHh
Confidence 854 5677888999999999988888889999999999999999999988888877776665543 33333333
Q ss_pred h-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHH
Q 000124 808 C-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILS 886 (2138)
Q Consensus 808 ~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~ 886 (2138)
. ...+.+||+-..+.+.. ....+..+.+.++-+..+....+. .....+.++..+.+....|-.+|..|+.+|.
T Consensus 442 kn~~l~ekLv~Wsks~D~a-Gv~gESnRll~~lIkHs~~kdv~~-----tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 442 KNPELFEKLVDWSKSPDFA-GVAGESNRLLLGLIKHSKYKDVIL-----TVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred cCHHHHHHHHHhhhCCccc-hhhhhhhHHHHHHHHhhHhhhhHh-----hccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 3 55677888887765544 357778888888776422211111 0112345889999999999999999999998
Q ss_pred HhhccCCc
Q 000124 887 RLCGDQPA 894 (2138)
Q Consensus 887 ~L~~~~~~ 894 (2138)
-.-.-++.
T Consensus 516 ~~~~~yl~ 523 (604)
T KOG4500|consen 516 STESKYLI 523 (604)
T ss_pred HHHHHhcc
Confidence 77665544
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-07 Score=124.30 Aligned_cols=817 Identities=15% Similarity=0.158 Sum_probs=436.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcHHHHH-HHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhHHHHHh-cCCh
Q 000124 51 NMSSPQERELITMRILTIAKAKKEARL-LIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE-DLRLKVLL-GGCI 127 (2138)
Q Consensus 51 ~s~s~~ere~AL~~L~~L~~~~d~ak~-lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e-~~r~~v~~-~G~I 127 (2138)
++.++..|+.|+..|..+...-.+..+ .+- ...+.+.+-+.+++..+|..+++++..++... .++..+.. ...+
T Consensus 128 ~S~~~~~rE~al~il~s~~~~~~~~~~~~~~---~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ll 204 (1075)
T KOG2171|consen 128 KSPNPSLRESALLILSSLPETFGNTLQPHLD---DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLL 204 (1075)
T ss_pred cCCCcchhHHHHHHHHhhhhhhccccchhHH---HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 456778899999999888654322211 221 24455556666666669999999998876443 23322222 2667
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhc
Q 000124 128 PPLLSLLKS----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCG 203 (2138)
Q Consensus 128 p~Lv~LL~s----ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs 203 (2138)
|.++..+.. +|.+.-..+.+.|..+.... ...-+..+.+ +|..-++...++. -+..++..|+..|..++.
T Consensus 205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~---pk~l~~~l~~--ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESE---PKLLRPHLSQ--IIQFSLEIAKNKE-LENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc---hHHHHHHHHH--HHHHHHHHhhccc-ccHHHHHHHHHHHHHHHH
Confidence 878877755 46777788999999998631 1222333333 5666666666555 355789999999998887
Q ss_pred CCCchhHHHHHhC--cHHHHHHhhccCC----------------HHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHH
Q 000124 204 DKDGYWRATLEAG--GVDIIVGLLSSDN----------------AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265 (2138)
Q Consensus 204 ~~e~r~~aI~e~G--GI~~Lv~lL~s~s----------------~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~ 265 (2138)
......+.....| -++.++..+.... ......|.++|-.++..-+ ...+-.-..+.+-.
T Consensus 279 ~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~---g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 279 YAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG---GKQVLPPLFEALEA 355 (1075)
T ss_pred hhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC---hhhehHHHHHHHHH
Confidence 6432222211222 2455555544311 1144566777777773211 11111224455555
Q ss_pred HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHH
Q 000124 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345 (2138)
Q Consensus 266 LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI 345 (2138)
+++ +.+...|..+..+|..++.++.+.-.... ...++.++..+.+|++. +|-.|+-|+..++....+.+
T Consensus 356 ~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphpr---------Vr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 356 MLQ-STEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPR---------VRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHH---------HHHHHHHHHHhhhhhhcHHH
Confidence 666 57788899999999988887554433322 45677777888888765 55666666666654433332
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc---
Q 000124 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI--- 422 (2138)
Q Consensus 346 ~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--- 422 (2138)
. ...+..+.+.|+..+++.....++.+++.++-+....-
T Consensus 425 q--------------------------------------k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 425 Q--------------------------------------KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred H--------------------------------------HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 2 01123455788888888877779999999998885431
Q ss_pred hhHHHHhhhchHH-HHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCc-h---hhHHHHHHH
Q 000124 423 FLSQWVSHAEAKK-VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS-E---QHQEYAVQL 497 (2138)
Q Consensus 423 ~~~~~L~e~~gI~-~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d-~---~Vr~~Aa~a 497 (2138)
.+...+ .+.++ .+..|+.++.+.+|+.++.+++..+... .....-.-...+|.|...+.+.+ . ..|-....+
T Consensus 467 ~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEc 543 (1075)
T KOG2171|consen 467 ILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMEC 543 (1075)
T ss_pred HHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHH
Confidence 111111 12233 4555677888999999999999887652 11111122456888999887655 2 255566666
Q ss_pred HHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCCcchhhh--------
Q 000124 498 IAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLW-------- 565 (2138)
Q Consensus 498 L~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nLs~~-sd~~r~~I~e~GaI~aLv~-------- 565 (2138)
+.-++......+..-.....+..+..+- .+.+...+........+++.- .++...++ .-.+++++.
T Consensus 544 isli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L--~~Vmppl~~ta~~~p~~ 621 (1075)
T KOG2171|consen 544 LSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL--PVVMPPLLKTARLDPDV 621 (1075)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHH--HHHhHHHHHhhccCCcc
Confidence 6666653222222222222333333321 111333444444444444320 00000000 001111110
Q ss_pred -c---------------------------cccCChhHHHHHHHHHHHHHHhhch-------hhHHH-HHHHhcCCCcchH
Q 000124 566 -L---------------------------LKSGGPKGQDASAMALTKLIRAADS-------ATINQ-LLALLLGDSPSSK 609 (2138)
Q Consensus 566 -L---------------------------LkS~~~evq~~Aa~AL~nLs~~~e~-------~aI~~-Li~LL~~~d~~V~ 609 (2138)
+ .++..-+-+..|+.+|+.++..... .+... +..+.-.-.+.|+
T Consensus 622 ~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR 701 (1075)
T KOG2171|consen 622 ALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVR 701 (1075)
T ss_pred cCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHH
Confidence 0 0111123467777788777655321 22231 2222234556788
Q ss_pred HHHHHHHHHHHhhh-----cchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhc------Chhhhhhhhh
Q 000124 610 AHVIKVLGHVLTMA-----LQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSM------RQDICGSLAT 677 (2138)
Q Consensus 610 ~~A~~AL~~La~~~-----~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~------~~e~r~~Ive 677 (2138)
..+++++..++... ..+...+.. -.+..+.++.-++.+ +.++.......+++.... +++..+.+.
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l--~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~- 778 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQL--WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALL- 778 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHH--HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHH-
Confidence 88888888876542 122222111 233456666655544 444444444444433211 111111110
Q ss_pred CCCHHHHHHH-----------------------hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh
Q 000124 678 DEIVNPCMRL-----------------------LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK 734 (2138)
Q Consensus 678 ~GaV~~Lv~L-----------------------L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~ 734 (2138)
.+....+... +.+.+...-..+...+..+...... .. ...=.++.+.++.++.
T Consensus 779 ~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~--~f--~p~f~~~~p~iv~~l~ 854 (1075)
T KOG2171|consen 779 GGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKG--SF--LPFFENFLPLIVKLLK 854 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc--cc--cHHHHHHHHHHHHHHh
Confidence 0111111111 0111222333444444555442211 11 1122346777888888
Q ss_pred cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHH
Q 000124 735 TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLT 814 (2138)
Q Consensus 735 s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~ 814 (2138)
++..--|.-|+.++.-+...-.-...-...+.+|.+..++.+.+++||++|+.-++-++.... +.++ -.+....+.
T Consensus 855 ~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g--~~y~--~v~~~~l~~ 930 (1075)
T KOG2171|consen 855 SKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGG--EDYA--PVCSEALPL 930 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--cchH--HHHHHHHHH
Confidence 877666888888888776533222233345688999999999999999999999999998643 2222 224556777
Q ss_pred HHHhhccCC----CCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCC-hHHHHHHHHHHHHhh
Q 000124 815 LVDSLNAMD----MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGP-PPLQDKAIEILSRLC 889 (2138)
Q Consensus 815 LV~LL~s~~----~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~-~~vq~~AieiL~~L~ 889 (2138)
|+..+.... +.......|..+++.+......+. . .++.++.+...+-..+ .+----...-|+.|.
T Consensus 931 L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i---------~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~ 1000 (1075)
T KOG2171|consen 931 LVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI---------P-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLY 1000 (1075)
T ss_pred HHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC---------c-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Confidence 777776432 223334555566665553322111 0 2223333333333222 223334466777877
Q ss_pred ccCCc-hhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhcccchhhHHHHH-hhcCCcHHHHHH
Q 000124 890 GDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDAL-DLSGYLKPLIYA 957 (2138)
Q Consensus 890 ~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~k~~~~~~~~~L-~~~g~~~~~i~~ 957 (2138)
..++. +.+.... .---|.+.....+.+...+-+...+ +++.+.|.|=+ .-... +..|.++++.+.
T Consensus 1001 e~n~p~v~~~~n~-~ip~i~~v~~~~~~~~~~~~~~~~~-r~~~ilkq~~~-~~~~~~~~~~~L~~~~~~ 1067 (1075)
T KOG2171|consen 1001 ESNHPIVLGPNNQ-NIPKILSVCAESLADKKIEPRSTLA-RVIEILKQFLA-PPSQFAALLATLPPDQQQ 1067 (1075)
T ss_pred HhCCCeeeCCCcc-cchHHHHHHHhhhhccCCCccchHH-HHHHHHHHHhc-CHHHHHHHHHhCCHHHHH
Confidence 76644 4432222 2222445555566777777787777 67666665544 11111 445555555443
|
|
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-13 Score=144.85 Aligned_cols=91 Identities=21% Similarity=0.413 Sum_probs=80.8
Q ss_pred EEEEEeccccccc--cc--------------CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2012 LTVTIKRGNNLKQ--TM--------------GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
|.|+|++|+||.. .. |..||||++.| .|.+.||+|+++++||+|||+|.|.+..|+..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~-~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF-AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE-CCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 7899999999943 11 36899999999 6777789999999999999999999888888999999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecce
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~ 2103 (2138)
+|||++.+ +.+.+|++.|.+.++..+|.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 99999998 66779999999999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=136.34 Aligned_cols=114 Identities=18% Similarity=0.332 Sum_probs=90.6
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK- 2085 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k- 2085 (2138)
.|+|+|.+|.||. +..|..||||++.++++ ..+||+++++++||.|||+|.|.+..+ ..+.|.|+||+++.+|+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 4899999999994 45588999999998544 234799999999999999999999876 57899999999999865
Q ss_pred cccceEEEEecceeecc---eecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2086 STLGKVTIQIDKVVTEG---VYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.+|++.++|+.+.... ....+|.|.+. |+ +.+.+.|.+.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~----g~---i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDTQ----GR---LLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCCC----Ce---EEEEEEEeee
Confidence 46999999998875532 33457888653 44 4477777654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=138.22 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=88.3
Q ss_pred CceEEEEEeccccccc---ccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCC
Q 000124 2009 PGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNT 2082 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~ 2082 (2138)
.|.|+|+|++|+||.. ..|..||||++.+.. ...++|+++++++||+|||+|.|.+..... ...|.|+||+++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 4679999999999943 358899999999842 344579999999999999999999866543 3589999999988
Q ss_pred CC-CcccceEEEEecceeecceecceeecCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
++ .+.+|++.|.|+++...+..+.+|.|.+
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 85 6889999999999999998889998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=163.40 Aligned_cols=277 Identities=22% Similarity=0.141 Sum_probs=222.3
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
...++.|++.|+++++.+|..|+..|..+.. .+.++.|+.+|+++++.+|..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 4457889999999999999999999988764 34789999999999999999999999888431
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
....+.|...+++.++.+|..++.+|..+.. +....+++.|.+.++.++..+..+|+.+
T Consensus 683 ----~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~~l~~~L~D~d~~VR~~Av~aL~~~------------- 741 (897)
T PRK13800 683 ----LPPAPALRDHLGSPDPVVRAAALDVLRALRA----GDAALFAAALGDPDHRVRIEAVRALVSV------------- 741 (897)
T ss_pred ----cCchHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHHHHHHHhcCCCHHHHHHHHHHHhcc-------------
Confidence 1223567778888999999999999988742 2245788899999999999988888753
Q ss_pred hcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 633 l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
+..+.|..++.++++++|..++.+|..+... ....++.|..+++|.++.+|..|+.+|+++.. +.
T Consensus 742 ----~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~ 806 (897)
T PRK13800 742 ----DDVESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGC--PP 806 (897)
T ss_pred ----cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cc
Confidence 1234567789999999999999999998752 12347889999999999999999999999864 11
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
..+..|+..|.+++..||..|+.+|+.+. .+..++.|+.++.+.+..||..|+++|.++
T Consensus 807 -----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 -----------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -----------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 13467888999999999999999999765 345679999999999999999999999987
Q ss_pred hhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHH
Q 000124 793 LKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838 (2138)
Q Consensus 793 ~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~ 838 (2138)
..+ ......|...+++. +..++.+|..+|..
T Consensus 866 ~~~-------------~~a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 PGD-------------PAARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred CCC-------------HHHHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 321 23567788888644 44569999988863
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-13 Score=142.20 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=84.9
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
+|.|+|+|++|.||. +..|..||||++++..| +++||+|+++++||+|||+|.|.+..... ...|.|+||+++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 589999999999994 56689999999998433 34579999999999999999998753323 468999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+..+ .-+...+|.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9976 7799999999987 4446677777776
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=133.06 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCCCCCcccc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNTFGKSTLG 2089 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~~~k~~~g 2089 (2138)
|.|+|++|.||... |..||||++.+ +|. .++||++++ .||.|||+|+|.+...=.+ ..|.|++|++++++++ .|
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~-~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~-~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSL-DQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD-IV 77 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEE-CCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe-eE
Confidence 78999999999887 99999999999 454 457999999 9999999999987543112 4678888998877542 45
Q ss_pred eEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
...+.|+..-..+....+|+|.+..++....+.+.++++
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 555666666668889999999886444445565556664
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=132.83 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=88.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.+++.+.++|++++++.||.|||+|.|.+.++ ..+.+.++||+++.+++ +.+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 68999999999 344578899999999433335799999999999999999998766 67899999999999864 589
Q ss_pred ceEEEEecceeecceecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|++.+.++++...+.+..++.|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCC
Confidence 9999999999998899999999876
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-12 Score=141.36 Aligned_cols=97 Identities=24% Similarity=0.402 Sum_probs=84.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----------------------------CccccccccCCCCCccc
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----------------------------PRQTKVVSHSISPEWKE 2058 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----------------------------~~~t~~~~~~~~p~w~~ 2058 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+. .++|+|+++++||+|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 35699999999999 5667999999999995432 24699999999999999
Q ss_pred cceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeec
Q 000124 2059 GFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2059 ~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+|.|.+.++ .++.|.|+||+++ .+.+|++.|.++++... .+..+|.|
T Consensus 107 ~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred EEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999876 5899999999998 78999999999999954 47888876
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=135.61 Aligned_cols=113 Identities=19% Similarity=0.378 Sum_probs=89.1
Q ss_pred eEEEEEeccccc-ccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2011 CLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
-|.|+|.+|+.+ .+..|+.||||++.++ |. .++|+++++++||+|||+|+|.+. .++.|.|+||+++.++ .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVD-GQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEEC-CcccEEeeeeCCCCCCccccEEEEEeC---CCCEEEEEEEeCCCCCCCcE
Confidence 489999999855 3445889999999994 55 667999999999999999999975 4689999999999885 578
Q ss_pred cceEEEEecceeec--cee---cceeecCCCCC-CCCCccceEEEE
Q 000124 2088 LGKVTIQIDKVVTE--GVY---SGLFNLNHDNN-KDSSSRTLEIEI 2127 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~--~~~---~~~~~l~~~~~-~~~~~~~~~~~~ 2127 (2138)
+|++.|+|+++..+ |.+ .+.|.|...++ .-++.|.+++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999864 444 34688875521 114456666665
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-07 Score=119.94 Aligned_cols=745 Identities=14% Similarity=0.155 Sum_probs=407.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCC-CChh
Q 000124 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLS-DDHV 162 (2138)
Q Consensus 85 gVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~n-kd~~ 162 (2138)
.+..|+.-|.+++.+++..|-..+.++...+. ..+.|..++.. +|+++|.-|+-.+..++..-.+ -+.+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 45667777788888999999999988754332 56888888887 7999999999999888753111 1222
Q ss_pred hHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
.+.. +-..|+..+.... .+.++....+++..+.+.. +..|.. .++.|.+...++++..|+.+..+|+
T Consensus 76 ~~~s-----iks~lL~~~~~E~--~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 76 VQQS-----IKSSLLEIIQSET--EPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILS 143 (1075)
T ss_pred HHHH-----HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHH
Confidence 2333 4455666666544 4568888888888888764 223443 4678888889999999999999999
Q ss_pred HHHhhcCCCcchhhccchHHHHHHHhc---cCCCHhHHHHHHHHHHHHhhcCH---HHHHHHHhcCCHHHHHHhhcCCch
Q 000124 242 RLMLAFGDSIPTVIDSGAVKALVQLVG---QNNDISVRASAADALEALSSKSI---KAKKAVVAADGVPVLIGAIVAPSK 315 (2138)
Q Consensus 242 nLs~~~~e~r~~l~~~GaL~~LL~LL~---s~sd~~vr~~Aa~aL~nLs~~s~---e~Rk~i~e~ggL~~LI~LL~s~s~ 315 (2138)
.+....+.. ..+.++.+..++. .+.+..+|..+..++..++..++ ..++.+. .-+|.++..+.....
T Consensus 144 s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 144 SLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQ 216 (1075)
T ss_pred hhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhh
Confidence 988433221 2234444555543 13344599999999998877542 3333333 345555555433110
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhcCchhHHH-Hh-------hhhcCCCCchhhH----HHHHHHHHHH-HHHhhcCCCCC
Q 000124 316 ECMQGQRGQALQGHATRALANIYGGMPALVV-YL-------GELSQSPRLAAPV----ADIIGALAYA-LMVFEQKSGVD 382 (2138)
Q Consensus 316 e~mq~~~~~alqe~Al~ALanIsGgis~LI~-~L-------~elL~~~~ss~~~----A~~L~aLa~~-l~~l~q~~~~~ 382 (2138)
. +..+....+..+|.-+.+..+.++. .+ .+.-.+.+....+ ..++..+... ..... .
T Consensus 217 ~-----~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-----~ 286 (1075)
T KOG2171|consen 217 D-----GDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-----K 286 (1075)
T ss_pred c-----cchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-----h
Confidence 0 0111223355666655544444321 11 1112222221111 1111111110 00000 0
Q ss_pred CcccchhhHHHHHHHHcCCCChh---------------HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHH
Q 000124 383 DEPFDARQIEDILVMLLKPHDNK---------------LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD 447 (2138)
Q Consensus 383 ~~~~~~~~Ie~~LV~LL~s~~~e---------------~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~e 447 (2138)
...+-+ .+.+.+...+....++ .....+.+++-.++.+-.-. ..-...++.+-.++.+.+..
T Consensus 287 ~~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 287 LALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred chhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHH
Confidence 001111 1223333333221111 12233334443333221100 00012245566688999999
Q ss_pred HHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 448 VREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 448 vq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
.+..+..+|..++.+..+.-.... ...++..+..++++++.||..|+.+++.++.+-...-..-.....++.|+..+.+
T Consensus 364 ~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 364 ERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 999999999999877544432221 3456778888899999999999999999987433333444455677788888887
Q ss_pred C-CHHHHHHHHHHHHHHhcCChh--HHHHHHHcCCcc-hhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHH
Q 000124 528 G-SQKAREVAAHVLWILCCHSED--IRACVESAGAVP-AFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQ 596 (2138)
Q Consensus 528 ~-d~~vre~Aa~aL~nLs~~sd~--~r~~I~e~GaI~-aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~ 596 (2138)
. ++.++..|+.++.|+....+. +...+ .+.+. .|..+..++.+.+++.++.+++..+.... ...+|.
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 6 889999999999999764322 11110 22333 33456678899999999999999987754 245677
Q ss_pred HHHHhcCCC----cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh---hcCCCHHHHHHHHHHHHHHhhc--
Q 000124 597 LLALLLGDS----PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV---LNSSNEENQEYAASVLADLFSM-- 667 (2138)
Q Consensus 597 Li~LL~~~d----~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L---Lks~s~evre~Aa~ALanL~s~-- 667 (2138)
|.+.|...+ ...+..+.+|++.+..-.....+.... ...+..+..+ -.+.+...+..-....+++|..
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg 597 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILG 597 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhc
Confidence 777776544 234556677777665332222221110 1112222222 1111333344444444444431
Q ss_pred ---------------------------------------------------------------------------Chhhh
Q 000124 668 ---------------------------------------------------------------------------RQDIC 672 (2138)
Q Consensus 668 ---------------------------------------------------------------------------~~e~r 672 (2138)
-.+..
T Consensus 598 ~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 598 DDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred hhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 00000
Q ss_pred hhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCc----ccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHH
Q 000124 673 GSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKT----KTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVA 746 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~----~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ 746 (2138)
..- -...++..+..+ -.-...+|+.|+.++..+.++... .+. ...-.-.++.+.++.-+.. .+.++....+.
T Consensus 678 ~pY-ve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~-~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~ 755 (1075)
T KOG2171|consen 678 APY-VEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE-YLKQLWEAIRPALIKALEEEPETEVLSEILE 755 (1075)
T ss_pred hhH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 000 001111111222 234567888888888777641100 001 1112234466666666665 45666666666
Q ss_pred HHHHhhC-------CchHHHHHHh---cCcHHHHHH-------------------HHhCCCHHHHHHHHHHHHHhhhcCC
Q 000124 747 ALANLLS-------DPDIAAEVLL---EDVVSALTR-------------------VLAEGTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 747 ALaNLa~-------~~e~r~~Ii~---~g~L~~LV~-------------------LL~~~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
.+++... +++..+.+.. ........+ .+.+.+..+..++..++..+.....
T Consensus 756 ~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k 835 (1075)
T KOG2171|consen 756 SFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALK 835 (1075)
T ss_pred HHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcc
Confidence 6666521 2222222111 111111111 1112233456677777777776431
Q ss_pred CchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHH
Q 000124 798 VGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPL 877 (2138)
Q Consensus 798 ~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~v 877 (2138)
..+. ..-.+..+.++.++...+. .. +.=|+..++.+.. .+....+ .....-++.+..++.+..|++
T Consensus 836 --~~f~--p~f~~~~p~iv~~l~~~~~-~~-r~~av~~~~d~ie---~~~~a~~-----~~~~~~~p~~~~~~~d~~pEV 901 (1075)
T KOG2171|consen 836 --GSFL--PFFENFLPLIVKLLKSKKT-VA-RQWAVCIFDDLIE---GCGEASA-----KYKERFLPLVLEALQDSDPEV 901 (1075)
T ss_pred --cccc--HHHHHHHHHHHHHHhcCCc-HH-HHHHHHHHHHHHH---hcccccc-----hHHHHHHHHHHHHcCCCCHHH
Confidence 1111 1115577788888864432 22 6666666665553 1111110 012345888999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 000124 878 QDKAIEILSRLCGDQ 892 (2138)
Q Consensus 878 q~~AieiL~~L~~~~ 892 (2138)
|+.|.+.+.-++...
T Consensus 902 RqaAsYGiGvlaq~~ 916 (1075)
T KOG2171|consen 902 RQAAAYGMGVLAQFG 916 (1075)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999887644
|
|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-12 Score=136.58 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=78.0
Q ss_pred CceEEEEEecccccc--ccc-CCCCceEEEEecCC--CCccccccccCCCCCcccccee-eecCC-CCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK--QTM-GTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTW-AFDVP-PKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~-~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~-~~~~~-p~~~~l~~~~~~~~ 2081 (2138)
.+.|+|+|++|.||. +.. |..||||++.+..+ .++||||+++++||+|||+|.| .++.- .....|+++||+++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 468999999999994 444 78899999998533 3447999999999999999999 34321 13457999999999
Q ss_pred CC-CCcccceEEEEecceeec--ceecce
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE--GVYSGL 2107 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~--~~~~~~ 2107 (2138)
.| +.+.+|++.|.|.++-.. |+.+-+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 123 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVS 123 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEE
Confidence 88 467899999999998654 544433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.4e-09 Score=133.46 Aligned_cols=437 Identities=15% Similarity=0.127 Sum_probs=301.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~ 120 (2138)
+...++.|..+. .+-.++..+..-....+.... .--+.+...|.+.+.+....++.+|..+.........
T Consensus 5 ~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l 74 (503)
T PF10508_consen 5 INELLEELSSKA----ERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSL 74 (503)
T ss_pred HHHHHHHHhccc----chHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH
Confidence 556666665542 234444444443322221111 2234477888888888888999999777654433333
Q ss_pred HHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 121 v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
..+..+.+...|.++++.+|..+++.|.++..+ +....+.+.+.+.++.++..+.+++ ..+...|..+|.+
T Consensus 75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPLIIQCLRDPD---LSVAKAAIKALKK 145 (503)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 346678888999999999999999999999863 3444677888999999999998754 4689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
++..+.+. ..+...+++..|..++...++.+|..+..++.+++..+++......+.|.++.++..+.. +|.-++..+.
T Consensus 146 l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnal 223 (503)
T PF10508_consen 146 LASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNAL 223 (503)
T ss_pred HhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHH
Confidence 99977655 567788889999999998888999999999999998888877888899999999999984 8889999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
..+..++. .+...+.+.+.|.++.|.+++.+...+. .
T Consensus 224 ell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~----------------------------------------- 260 (503)
T PF10508_consen 224 ELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R----------------------------------------- 260 (503)
T ss_pred HHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c-----------------------------------------
Confidence 99999999 5888899999999999999887644221 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHh-hhchHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVS-HAEAKKVLIG 439 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~-e~~gI~~LV~ 439 (2138)
....+-. +...+ .++++.... ...+. -...+..+..
T Consensus 261 ---------------------~~~~~l~-g~~~f--------------------~g~la~~~~-~~v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 261 ---------------------LSSLLLP-GRMKF--------------------FGNLARVSP-QEVLELYPAFLERLFS 297 (503)
T ss_pred ---------------------ccchhhh-hHHHH--------------------HHHHHhcCh-HHHHHHHHHHHHHHHH
Confidence 0000000 00001 111111000 00000 0123445667
Q ss_pred HHccCCHHHHHHHHHHHHHhhhccchhhHHh-hhch-h----HHHHHHHhcCCchhhHHHHHHHHHHHhhcCch---h--
Q 000124 440 LITMATADVREYLILSLTKLCRREVGIWEAI-GKRE-G----IQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---S-- 508 (2138)
Q Consensus 440 LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I-~e~g-g----Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e---~-- 508 (2138)
++.+.+...+..|..+|+.++... +-+..+ ...+ . +........++..++|..++.+|.++-....+ +
T Consensus 298 ~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 298 MLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 788899999999999999999774 444444 3332 3 33344455677788999999999999432221 1
Q ss_pred ---HHHHH---hcCCch-HHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh---hHHHHH
Q 000124 509 ---KWAIT---AAGGIP-PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP---KGQDAS 578 (2138)
Q Consensus 509 ---r~~I~---~aGaIp-~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~---evq~~A 578 (2138)
....+ ..+... .+..+++.+-+++|..+...|..|+.+.-..+.+....|.+.-|+.--...+. +.++..
T Consensus 377 ~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~i 456 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDI 456 (503)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHH
Confidence 11111 223333 56777888889999999999999998777777777777777666643333333 455556
Q ss_pred HHHHHHH
Q 000124 579 AMALTKL 585 (2138)
Q Consensus 579 a~AL~nL 585 (2138)
+.+|.+.
T Consensus 457 i~~l~~~ 463 (503)
T PF10508_consen 457 IKALAKS 463 (503)
T ss_pred HHHHHhc
Confidence 6555543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-12 Score=134.99 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=87.2
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCC---CCCeEEEEEeecCCCC
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNTFG 2084 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~~~ 2084 (2138)
.|.|+|++|+||. +..|..||||++.+++-.+++|++++ .+.||+|||+|.|.+.++. -.+.|.++||+++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999994 45689999999999443667799986 4899999999999998763 2799999999999865
Q ss_pred -CcccceEEEEecceeeccee-----cceeecCCC
Q 000124 2085 -KSTLGKVTIQIDKVVTEGVY-----SGLFNLNHD 2113 (2138)
Q Consensus 2085 -k~~~g~~~~~~~~v~~~~~~-----~~~~~l~~~ 2113 (2138)
.+.||++.|.+.++..+++- ...|.|.+.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~ 115 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP 115 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC
Confidence 46899999999999998864 467999875
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=134.77 Aligned_cols=89 Identities=18% Similarity=0.358 Sum_probs=74.5
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCC---CccccccccCCCCCccccceeeecCCCCCCe----EEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP---PRQTKVVSHSISPEWKEGFTWAFDVPPKGQK----LHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~----l~~~~~~~~ 2081 (2138)
-|-|+|+|++|.||. ..|..||||++.+.-++ ++||+|.++++||.|||+|.|-+ | ..+. |++.||+.|
T Consensus 13 ~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v--~-~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 13 KAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPL--P-EEESLDGTLTLTLRCCD 88 (118)
T ss_pred CCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeC--C-HHHhCCcEEEEEEEeCC
Confidence 588999999999998 44889999999995432 33599999999999999999954 4 5555 999999999
Q ss_pred CCC-CcccceEEEEecceeec
Q 000124 2082 TFG-KSTLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2082 ~~~-k~~~g~~~~~~~~v~~~ 2101 (2138)
.|| .+.+|+|.+.+.+|-..
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred CCCCCceEEEEEEccccccCC
Confidence 995 46699999999987443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-12 Score=134.99 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=85.0
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEe--cCCCCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~~~~ 2083 (2138)
+-|+|+|++|.|| .+..|..||||++.+ .++.++||||+++ .||+|||+|.|. +... ..+..|++.||+++.|
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 6799999999999 455578899999776 3344557999988 999999999997 4322 2467899999999999
Q ss_pred C-CcccceEEEEecceeecceecceeecCC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
+ .+.+|.+.|.|.++-.++....+|.|.|
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 6 6679999999999999999999999875
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-12 Score=136.34 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=79.5
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecC------CCCccccccccCCCCCccccceeeecCCC---CCCeEEEEEe
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGN------GPPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICK 2078 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~ 2078 (2138)
+.|+|+|++|.||. +..|..||||++.+.. ...+||+|+++|+||+|||+|.|.+.... .+..|+|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 67999999999994 4458999999999953 34567999999999999999999987642 4678999999
Q ss_pred ecCCCC-CcccceEEEEecceeecc
Q 000124 2079 SKNTFG-KSTLGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2079 ~~~~~~-k~~~g~~~~~~~~v~~~~ 2102 (2138)
+++.++ .+.+|++.|.|+++...+
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCccc
Confidence 999987 789999999999987543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-12 Score=138.55 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=85.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ .+++|+++++++||+|||+|.|.+..+-+. ..|.|+||+++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 47899999999999 455588999999999532 234699999999999999999987543222 37999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.||+ +.+|+|.|.+.. ...+++.+|.+...
T Consensus 94 ~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~ 124 (136)
T cd08402 94 RIGKNDPIGKVVLGCNA--TGAELRHWSDMLAS 124 (136)
T ss_pred CCCCCceeEEEEECCcc--CChHHHHHHHHHhC
Confidence 9987 679999999975 46678888999888
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-12 Score=131.53 Aligned_cols=80 Identities=30% Similarity=0.623 Sum_probs=66.1
Q ss_pred EEEEEecccccccccCCCCceEEEEecC-C---CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec-------
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-G---PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK------- 2080 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~------- 2080 (2138)
|.|+|++|+||+ |..||||+|.+.. | +..|||++++|+||+|||+|+|.++. .+.|.+.||++
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccccc
Confidence 689999999996 5699999998843 2 23479999999999999999999863 67999999998
Q ss_pred CCCCC-cccceEEEEecc
Q 000124 2081 NTFGK-STLGKVTIQIDK 2097 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~ 2097 (2138)
+.+|+ +-+|+..|+|+.
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 45666 557888888754
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-12 Score=134.36 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~ 2081 (2138)
|.|+|+|++|.||. +.-|..||||++.+-.++ +|||||+++++||.|||+|.|.+..-= .+-.|++.||+++
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 58999999999993 344789999999975444 446999999999999999999763211 4578999999999
Q ss_pred CC-CCcccceEEEEecceeec-ceecceeec
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE-GVYSGLFNL 2110 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~-~~~~~~~~l 2110 (2138)
.+ ..+.||.|.|.|+++-.. +.+..+|.|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 88 467799999999999554 457777765
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-12 Score=136.95 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=88.3
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~ 2082 (2138)
|.|.|+|++|.||. +..|..||||++.+..+. .++|++++++.||.|||+|.|.+..+.+ ++.|.|+||+++.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 78999999999994 446899999999995542 3479999999999999999999865532 6899999999998
Q ss_pred C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|++.|.++. .......+|.|.++
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 6 55789999999999 67778999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-12 Score=132.76 Aligned_cols=89 Identities=16% Similarity=0.360 Sum_probs=78.0
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCC-ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~ 2086 (2138)
+|.|+|++|+|| .+..|..||||++.+++... +||++++++.||+|||+|.|.+..| .++.|.|+||+++.+ ..+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 589999999999 46778999999999955444 3699999999999999999998765 789999999999998 468
Q ss_pred ccceEEEEecceee
Q 000124 2087 TLGKVTIQIDKVVT 2100 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~ 2100 (2138)
.+|++.|+|+++.-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-12 Score=136.03 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=81.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCC-eEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~ 2081 (2138)
-|.|.|+|++|.|| .+..|..||||++++..|. +|||+|++++.||+|||+|.|.+......+ .|.|+||+++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 38899999999999 4556899999999984443 457999999999999999999985444444 6999999998
Q ss_pred CC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+ +.+.+|+|.|....+= ..+...+|.+.+.
T Consensus 93 ~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 87 6788999986542221 2235667777776
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-12 Score=135.07 Aligned_cols=102 Identities=16% Similarity=0.267 Sum_probs=82.1
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~ 2082 (2138)
|.|.|+|++|.|| .+..|..||||++.+..+ .++||+|+++++||.|||+|.|.+...... ..|.++||+++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 7899999999999 445589999999999532 345799999999999999999987543333 469999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+| .+.+|+|.|.+. . ....+..+|.++..
T Consensus 94 ~~~~~~IG~~~l~~~-~-~~~~~~~w~~~~~~ 123 (134)
T cd08403 94 VGHNELIGVCRVGPN-A-DGQGREHWNEMLAN 123 (134)
T ss_pred CCCCceeEEEEECCC-C-CCchHHHHHHHHHC
Confidence 97 577999999987 2 23345677888777
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=130.01 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=84.1
Q ss_pred EEEeccccc--ccccCCCCceEEEEecCCC------CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC---
Q 000124 2014 VTIKRGNNL--KQTMGTTNAFCRLTIGNGP------PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT--- 2082 (2138)
Q Consensus 2014 v~v~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~--- 2082 (2138)
.-.++|+|| .+..|..||||++.+..++ .+||+|+++|+||+|||+|.|.+..+ ..+.|.++||++++
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcC
Confidence 345788999 5666899999999995544 36799999999999999999987644 67899999999997
Q ss_pred -C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 -F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 -~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|+|.+++.++.........|+|.+.
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 5 567899999999999988888889999665
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-08 Score=128.86 Aligned_cols=389 Identities=18% Similarity=0.171 Sum_probs=277.9
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
.+...+...+.+.+ ..++..|..+......... ..+..+.+...+.+.++.++.-++..+.++..++......+.+.
T Consensus 42 ~lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 35555665555534 4555666666544332222 34556788889999999999999999999998876667777888
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
+.++.++.++.+++..+...|+.+|.+++.+ +.....+...+.+..|..++...++.+|..+.+++.+++..+++....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999984 555566778888999999998889999999999999999999999999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcch---H---HHHHHHHHHHH
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSS---K---AHVIKVLGHVL 620 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~~d~~V---~---~~A~~AL~~La 620 (2138)
+.+.|.++.++..++++|.-+|.++...|..|+..+ +.++++.|..++.+.+.+- . .......++++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999998753 3678899999997543332 1 11123444444
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhh-hhC-CCH----HHHHHHhccCCHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL-ATD-EIV----NPCMRLLTSNTQM 694 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~I-ve~-GaV----~~Lv~LL~dgs~~ 694 (2138)
.. .+..+... -+..+..|..++.+.+...+..|..+++.+++ +.+....+ ... +.+ ..+-...+.++.+
T Consensus 278 ~~--~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 278 RV--SPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred hc--ChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33 22222211 13356677778888899999999999999998 66776666 443 343 3444455678889
Q ss_pred HHHHHHHHHHHhcCCCCcccchhh-----h---HHhcCChh-hHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh-c
Q 000124 695 VATQSARALGALSRPTKTKTTNKM-----S---YIAEGDVK-PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL-E 764 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~-----~---I~~~G~V~-~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~ 764 (2138)
+|..+..|++++.......+..+. . ....+-.. .++.+++.+=+++|..+...|..|+.++-....+.. +
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~ 432 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSP 432 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCc
Confidence 999999999999652221001111 1 11223333 567777777799999999999999998876666654 4
Q ss_pred CcHHHHHHHHhCCCHHH---HHHHHHHHHH
Q 000124 765 DVVSALTRVLAEGTSEG---KKNASRALHQ 791 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~V---r~~Aa~AL~n 791 (2138)
|.+..++.=-.+.+.+. |...+.+|.+
T Consensus 433 gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 433 GFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred cHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 44444433222233333 4444444443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-12 Score=134.88 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=81.8
Q ss_pred hhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCC-CCCeEEE
Q 000124 2005 LHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHI 2075 (2138)
Q Consensus 2005 ~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~ 2075 (2138)
|+..| +.|+|+|++|.|| .+..|..||||++.+-.++ +|||+|+++++||+|||+|.|.+...= ....|.|
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~ 87 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRV 87 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEE
Confidence 34443 6799999999999 4445889999999994332 447999999999999999999875332 3456999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+||+++.| +.+.+|+|.|-... ....+..++.+..+
T Consensus 88 ~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 88 TVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred EEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 99999877 66889999996543 33445666667766
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=130.39 Aligned_cols=95 Identities=24% Similarity=0.437 Sum_probs=78.3
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCCC----CccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~ 2080 (2138)
+|.|.|+|++|.||. +..|..||||++.+..+. .++|+++++++||.|||.|.|. +... ..++.+.|+||++
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 478999999999993 445789999999984333 3469999999999999999995 3211 1357999999999
Q ss_pred CCCCCcccceEEEEecceeecce
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~ 2103 (2138)
++|+.+.+|++.+.|+++...+.
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999886543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-07 Score=124.40 Aligned_cols=504 Identities=20% Similarity=0.199 Sum_probs=325.3
Q ss_pred HHHHHHhcC--CHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 88 LFISILRSG--TPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 88 ~LV~LLks~--~~evr~~Aa~-~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.+.+.+.+. +..-+..++. ++.....+.+.. .+.+.+++++.+++.+.++-+--++..+... ++. .
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~-~ 76 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPE-L 76 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHH-H
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chh-H
Confidence 344555554 5544444443 444444433322 6788999999989999999988888888852 332 1
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
-.+ ++..+.+-+.+++ +.++..|+++|.+++. ..+.+. .++.+..++.++++.+|..|+.++.++.
T Consensus 77 ~~l----~~n~l~kdl~~~n---~~~~~lAL~~l~~i~~------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 77 LIL----IINSLQKDLNSPN---PYIRGLALRTLSNIRT------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp HHH----HHHHHHHHHCSSS---HHHHHHHHHHHHHH-S------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHhhcCCC---HHHHHHHHhhhhhhcc------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 111 5677777777654 6789999999999985 233322 4778888999999999999999999999
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhh
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQ 324 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~ 324 (2138)
..+++.. ... .++.+..++. +.+..++..|..++..+ ..+++....+ ++.++
T Consensus 143 ~~~p~~~---~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~~~-----~~~~~----------------- 194 (526)
T PF01602_consen 143 RKDPDLV---EDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYKSL-----IPKLI----------------- 194 (526)
T ss_dssp HHCHCCH---HGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHTTH-----HHHHH-----------------
T ss_pred ccCHHHH---HHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhhhh-----HHHHH-----------------
Confidence 7655432 222 6888888886 57788888888888777 2212211000 01111
Q ss_pred hhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCCh
Q 000124 325 ALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404 (2138)
Q Consensus 325 alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~ 404 (2138)
+.|..++...++
T Consensus 195 --------------------------------------------------------------------~~L~~~l~~~~~ 206 (526)
T PF01602_consen 195 --------------------------------------------------------------------RILCQLLSDPDP 206 (526)
T ss_dssp --------------------------------------------------------------------HHHHHHHTCCSH
T ss_pred --------------------------------------------------------------------HHhhhcccccch
Confidence 111111122222
Q ss_pred hHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc
Q 000124 405 KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 405 e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
+ .+..+++.+..++....... .....++.+..++.+.++.+...++.++..+..... .-...++.|.+++.
T Consensus 207 ~-~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 207 W-LQIKILRLLRRYAPMEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLS 277 (526)
T ss_dssp H-HHHHHHHHHTTSTSSSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHhcccCChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhh
Confidence 2 33333333333322211000 003456677777778888888899988887776532 23466889999999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+.++.+|..++..|..++... ...+. .....+..+. +.+..+|..+...|..++. ....+. .++.|
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~------Il~eL 344 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKE------ILDEL 344 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHH------HHHHH
T ss_pred cccchhehhHHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc-ccchhh------HHHHH
Confidence 999999999999999998743 22222 2333344555 7799999999999999985 222222 45667
Q ss_pred hhcc-ccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 564 LWLL-KSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 564 v~LL-kS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
...+ ...+++.+..++..++.++..-. ...++.+++++....+.+...+...+..+....+. . ....+
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~------~~~~l 416 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--L------REKIL 416 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--T------HHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--h------hHHHH
Confidence 7777 44588899999999999986532 45788999999988888877777777776543221 1 11247
Q ss_pred hHHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 640 RSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 640 ~aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
..|+.++.+ .+++.+..++|.++..+...++ .. .-...+..+.......++.+|.....++..+....+.. ..+
T Consensus 417 ~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~-~~~- 491 (526)
T PF01602_consen 417 KKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN-EVQ- 491 (526)
T ss_dssp HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-THH-
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-hhH-
Confidence 888888876 5788999999999998764322 00 11234455566666778889999999999998633320 111
Q ss_pred hHHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHh
Q 000124 719 SYIAEGDVKPLIKLAK--TSSIDAAETAVAALANL 751 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~--s~s~~Vr~eAl~ALaNL 751 (2138)
..+...+..+.. +.+.+||..|...+.-|
T Consensus 492 ----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 ----NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ----HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 135666777777 78999999999887755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-12 Score=135.61 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=83.7
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~ 2082 (2138)
+-|+|+|++|.|| .+ .|..||||++.|.-+ .+|||||+++++||.|||+|.|.+...++. ..|+|+||+++.
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 6799999999999 45 588999999999544 355799999999999999999999766666 589999999987
Q ss_pred C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|+|.|.....-..-++..++.+...
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 7 556899999886544444456667777666
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-12 Score=134.11 Aligned_cols=103 Identities=12% Similarity=0.256 Sum_probs=84.2
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.+.|+|+|++|.|| .+..|..||||++.+..+. ++||+|+++++||+|||+|.|.+...-. +..|.|+||+++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 47899999999999 4556899999999995443 3479999999999999999998754322 456889999999
Q ss_pred CCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.++ .+.+|+|.|.+.. ....+..+|.|.+.
T Consensus 94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 984 6799999999998 34457778888765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-08 Score=130.01 Aligned_cols=360 Identities=20% Similarity=0.220 Sum_probs=246.3
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.+.+..++.+.+.. ++..++.++..+..++.... -.-...+..|..++...++-.|..+...|..++..++.....
T Consensus 154 ~~~l~~lL~d~~~~-V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~-- 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPS-VVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK-- 229 (526)
T ss_dssp HHHHHHHTTHSSHH-HHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--
T ss_pred HHHHhhhccCCcch-hHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--
Confidence 35566666555543 66667776766612221111 011123445555667888999999999999988765444311
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
...++.+..++.+.++.+...++.++..+... .. ....+++.|..+|.+.++++|..+...|..++... .
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~ 299 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---P 299 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---H
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---c
Confidence 45678888899989999999999999988763 22 23457899999999999999999999999998744 1
Q ss_pred HHHHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHH
Q 000124 552 ACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAAD-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~~~d~ 628 (2138)
..+. .....+..+ .+.++.++..+...|.++++..+ ..+++.|.+.+ ...+++++..+..+++.++..-...
T Consensus 300 ~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-- 374 (526)
T PF01602_consen 300 PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-- 374 (526)
T ss_dssp HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--
T ss_pred hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--
Confidence 2221 122223334 48889999999999999987654 45778899999 4557789999999999886542211
Q ss_pred HHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 000124 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALS 707 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa 707 (2138)
..-.++.++.+++.+++.+...+...+.++...+++.+.. ++..|++.+.+ .++.++..++|.++..+
T Consensus 375 ------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~ 443 (526)
T PF01602_consen 375 ------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYG 443 (526)
T ss_dssp ------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccC
Confidence 1125889999999887888888888899988766655443 37788888876 67789999999999987
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Cc--hHHHHHHhcCcHHHHHHHHh--CCCHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP--DIAAEVLLEDVVSALTRVLA--EGTSEGK 782 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~--e~r~~Ii~~g~L~~LV~LL~--~~~~~Vr 782 (2138)
...+ . .. .....++.+.+.....+..++...+.++.-+.. +| +.+. ..++.+..+.. +.++++|
T Consensus 444 ~~~~---~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 444 ELIE---N--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp HHHT---T--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHH
T ss_pred Cccc---c--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHH
Confidence 5111 1 00 112245556666666778899999999998864 33 2222 34455666777 7799999
Q ss_pred HHHHHHHHHh
Q 000124 783 KNASRALHQL 792 (2138)
Q Consensus 783 ~~Aa~AL~nL 792 (2138)
+.|.+.+.=|
T Consensus 513 ~Ra~~y~~ll 522 (526)
T PF01602_consen 513 DRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877533
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-11 Score=129.57 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=79.3
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC--------CCCeEEEEEeecC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP--------KGQKLHIICKSKN 2081 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--------~~~~l~~~~~~~~ 2081 (2138)
|.|+|++|.|| .+..|..||||++.+ .+.++||++++++.||.|||+|.|.+-..| ....|.|+||+++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSF-LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEE-CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 78999999999 677799999999999 577888999999999999999999743321 1257999999999
Q ss_pred CCCC-cccceEEEEec-ceeec---ceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQID-KVVTE---GVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~-~v~~~---~~~~~~~~l~~~ 2113 (2138)
++|+ +.+|++.|... .+-.+ .....+|.|...
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG 118 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC
Confidence 9976 69999997432 22211 345577777644
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=126.83 Aligned_cols=490 Identities=15% Similarity=0.069 Sum_probs=294.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHh-ccCchhHHHHHhcCChHH
Q 000124 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL-CKDEDLRLKVLLGGCIPP 129 (2138)
Q Consensus 53 ~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~L-s~~e~~r~~v~~~G~Ip~ 129 (2138)
.+++....+..-..++....+..+.-+.+ .|+++.|..++... .++.+...+.++..+ +.+.+....+...+-++.
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik-~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIK-LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhh-hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 45666677777788887776666665555 79999999999875 456666677777544 577788889999999999
Q ss_pred HHHhhccCC-HHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000124 130 LLSLLKSES-TDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2138)
Q Consensus 130 Lv~LL~sed-~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r 208 (2138)
++++|.+.| ..+++..++.+.++..... ...-.........++.+..++.-.. +.....-.....++|+.. .+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~--~q~~~~s~~~~sIi~~~s~l~s~~l---k~~~~l~~~~~a~~s~~~-~h 173 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSK--YQDKKMSLHLKSIIVKFSLLYSIEL---KYISRLDVSRAAHLSSTK-DH 173 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhccc--ccccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhhhccccccc-hh
Confidence 999999977 8899999999999986421 1111122223335555555444122 122333344445555555 55
Q ss_pred hHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH---HHHhhcCCCcchh----hccchHHH-HHHHhccCCCHhHHHHHH
Q 000124 209 WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA---RLMLAFGDSIPTV----IDSGAVKA-LVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 209 ~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~---nLs~~~~e~r~~l----~~~GaL~~-LL~LL~s~sd~~vr~~Aa 280 (2138)
+..+.++|..+.+.-++...+-..|..+...+. ++...++.....+ .+.|+.+. .+..+..+.+...+..+.
T Consensus 174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl 253 (678)
T KOG1293|consen 174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL 253 (678)
T ss_pred hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence 567777888888887777777889999988888 5554444433332 34555553 344444355666777777
Q ss_pred HHHHHHhhcC--HHHHHH--HHhcCCHHHHHH-----hhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhh
Q 000124 281 DALEALSSKS--IKAKKA--VVAADGVPVLIG-----AIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2138)
Q Consensus 281 ~aL~nLs~~s--~e~Rk~--i~e~ggL~~LI~-----LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~el 351 (2138)
.++.++...+ .+++-. +..+.|-..+.. ++.+|-.. .-+++-...+-++.+ .+.
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s------~l~~~~~l~c~~a~~-----------~sk 316 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLS------TLDHTNVLFCILARF-----------ASK 316 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCcee------ehhhhhhhHHHHHHH-----------HHh
Confidence 7777776543 122111 111111111111 11111100 000000011111110 011
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHh
Q 000124 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVS 429 (2138)
Q Consensus 352 L~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~ 429 (2138)
++.+.-.......+..+-....-+. .+.++.+.-++... ..+...+.+ .++++.+.
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~------------a~~~~~~~i~l~e~----------~i~~~~~~~~~i~~~k~~l 374 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLA------------ASDEKYRLILLNET----------LILNHLEYGLEISLKKEIL 374 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHh------------hcchhhhHHHhhhh----------hhhhhhhhhcchhHHHHHH
Confidence 1110000000000000000000000 00001110000000 000111111 24445555
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
+......+..+....+.++...++.++.+++..-...+..+....++.+|++++..++..++..++++|+|+...=...+
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k 454 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK 454 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH
Confidence 55445555555566778888888888888887655555556677899999999999999999999999999998656788
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..+.+.|+|..+...+.+.++.+|..+.|+|+++..+.++.+...-. .=.-..+..+..++++.+|+++-..|.|+.+.
T Consensus 455 skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 455 SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999876654433222 22334556788899999999999999999876
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-11 Score=154.21 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=89.7
Q ss_pred CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecc
Q 000124 2027 GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSG 2106 (2138)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~ 2106 (2138)
+..||||+|.+++....||||++++.||+|||+|+|.+.+| ...|++.|||++.||.+.+|++.|.+.++.....+.+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEE
Confidence 57799999999442223799999999999999999999986 3589999999999999999999999999999889999
Q ss_pred eeecCCCCCCCCCc-cceEEEEEecCC
Q 000124 2107 LFNLNHDNNKDSSS-RTLEIEIIWSNR 2132 (2138)
Q Consensus 2107 ~~~l~~~~~~~~~~-~~~~~~~~w~~~ 2132 (2138)
+|.|.+++.|+=+. .++.+++|..+-
T Consensus 153 Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 153 WFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred EEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999997665544 366688888764
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=122.79 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=90.1
Q ss_pred eEEEEEeccccccc----ccCCCCceEEEEecC-----CCCccccccccCC-CCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2011 CLTVTIKRGNNLKQ----TMGTTNAFCRLTIGN-----GPPRQTKVVSHSI-SPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~t~~~~~~~-~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
.|+|+|++|+||.. ..|..||||++.+.. +.+++|++++++. ||+|||+|.|.+..| ..+.|.++||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 58999999999953 358899999999942 2334799999886 999999999999955 567899999999
Q ss_pred CCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
+.++.+.+|++.+.|+++ .+|. ..|+|.+..++.-.-+.+.+++.
T Consensus 82 ~~~~~~~iG~~~~~l~~l-~~g~--~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 82 DSGDDDFLGQACLPLDSL-RQGY--RHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred CCCCCcEeEEEEEEhHHh-cCce--EEEEecCCCCCCCcceeEEEEEE
Confidence 988899999999999987 4453 57999887343223355666553
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-11 Score=123.35 Aligned_cols=86 Identities=20% Similarity=0.373 Sum_probs=71.1
Q ss_pred EEEEeccccc--ccccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecCC
Q 000124 2013 TVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2013 ~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~ 2082 (2138)
.+..++|.|| .+..|+.||||++.+.... .++|+|+++++||+|| +|.|..++.. .+++|.|+||+++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456689999 5667899999999984332 2479999999999999 7998866432 36899999999999
Q ss_pred CCC-cccceEEEEeccee
Q 000124 2083 FGK-STLGKVTIQIDKVV 2099 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~ 2099 (2138)
+|| +.+|++.++++++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 976 78999999999998
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-08 Score=123.45 Aligned_cols=497 Identities=15% Similarity=0.048 Sum_probs=297.7
Q ss_pred hcCCHHHHHHHHHHHHHhc-cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc
Q 000124 94 RSGTPLAKVNVAATLSVLC-KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2138)
Q Consensus 94 ks~~~evr~~Aa~~L~~Ls-~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea 170 (2138)
-..+++....+.....++. .+++.+..+...|+++.++.++..+ +++.....+..+..+..+ ++.....+.+.
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~----eqd~v~svL~~ 94 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLG----EQDKVDSVLRI 94 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhh----ccchHHHHHHH
Confidence 3456666677777777764 5677888889999999999999774 677777777788888763 55667889999
Q ss_pred CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc--hhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000124 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG--YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~--r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~ 248 (2138)
+.++.|++++.+++ ...+.+..+++++++-..... ......+..-+..+..++.-+.......-+....+++ ..+
T Consensus 95 ~~ll~Ll~LLs~sD--~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~ 171 (678)
T KOG1293|consen 95 IELLKLLQLLSESD--SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STK 171 (678)
T ss_pred hhHHHHHHHhcCcc--hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccc
Confidence 99999999998765 235788999999999877532 2222222233455544444233444444444444444 334
Q ss_pred CCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHH---HHhhcCHHHHHHHHh---cCCHH---HHHHhhcCCchhhhh
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE---ALSSKSIKAKKAVVA---ADGVP---VLIGAIVAPSKECMQ 319 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~---nLs~~s~e~Rk~i~e---~ggL~---~LI~LL~s~s~e~mq 319 (2138)
+.+....+.|+.+.+.-++. ......|..+...+. .+..+++.....++. .+|+. .+..+..++...
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~-~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s--- 247 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLM-YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS--- 247 (678)
T ss_pred hhhheeccccchhhHHHHHH-hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc---
Confidence 55555667788777766665 334578888888888 676755544443322 33333 344444444422
Q ss_pred hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHH--H
Q 000124 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILV--M 397 (2138)
Q Consensus 320 ~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV--~ 397 (2138)
.+..+..||-+++.+-.. .++-.-...+.+-+- ..++ .
T Consensus 248 ------~~l~sl~cl~~~~~~s~~---------------------------------~d~l~~~~~~~dmgd-~~i~q~~ 287 (678)
T KOG1293|consen 248 ------ERLRSLECLVPYLRKSFN---------------------------------YDPLPWWFIFFDMGD-SLIVQYN 287 (678)
T ss_pred ------HHHHHHHHHHHHHhcccc---------------------------------ccccccceeeccCch-HHHHHHh
Confidence 233444454444321100 011111111211110 0000 0
Q ss_pred HcCC-CChhHHHHHHHHHHHHh-hc-CchhHHHHhhhchHHHHHHHHc------cCCHHHHHHHHH---HHHHhhhcc-c
Q 000124 398 LLKP-HDNKLVQERVLEAMASL-YG-NIFLSQWVSHAEAKKVLIGLIT------MATADVREYLIL---SLTKLCRRE-V 464 (2138)
Q Consensus 398 LL~s-~~~e~vr~~Aa~AL~~L-~~-n~~~~~~L~e~~gI~~LV~LL~------sss~evq~~Aa~---aL~~Ls~~s-~ 464 (2138)
.+.. .++......+...+..+ ++ -+.++....+....+..+.++. .+.++.+.-++. .+..++... .
T Consensus 288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 0000 11111111111112111 11 1122222333344444444432 233333333321 112222221 2
Q ss_pred hhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHh
Q 000124 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2138)
Q Consensus 465 ~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs 544 (2138)
+.+..+.+.-....+.......+...+..|+.++.++++....-|..+-...+..+|+++|..++..++..+.++|+||.
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 33444444444444555555667778888888888887754555555666788999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~ 624 (2138)
.+-...+..+.+.|+|..+..++.+.++.++..+.|+|.++....+. ..+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---------------~~k~~------------- 499 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---------------EEKFQ------------- 499 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---------------HHHHH-------------
Confidence 98888899999999999999999999999999999999999765321 11110
Q ss_pred chHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 625 ~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
..++. ....++.+.++++++++|.+...|.|+..+..+....+.+
T Consensus 500 ---~~~ki-----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 500 ---LLAKI-----PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred ---HHHHh-----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 11111 3456778888999999999999999998754444444433
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-08 Score=123.61 Aligned_cols=380 Identities=15% Similarity=0.143 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHh
Q 000124 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2138)
Q Consensus 100 vr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~L 179 (2138)
....|..+|.+|+.+...-.+++....+..|++.|...+.+........|..||..+ +++..+.+.|.|..|+++
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-----eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-----ENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-----cchHHHHhccHHHHHHHh
Confidence 344566777999999999999999999999999999988999999999999999753 347789999999999999
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccch
Q 000124 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGA 259 (2138)
Q Consensus 180 L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~Ga 259 (2138)
+.... +.++...+..|.|++-+.- ....|++.|-+|.+..+|.++. -...|+..|+.++ .+.+.+..+....+
T Consensus 354 fp~~h---~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S-~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 354 FPIQH---PDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLS-CDDDAKAMFAYTDC 426 (791)
T ss_pred cCCCC---HHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhc-cCcHHHHHHHHHHH
Confidence 97644 5688899999999988654 4488999999999999998863 2355788888888 45556666777889
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHhh
Q 000124 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIY 338 (2138)
Q Consensus 260 L~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanIs 338 (2138)
++.+.+.+-.+.+..+-..-.....|++. +..+.+.+.+.+|++.|.+.... .+.-.| ..++.++.--
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLm----------K~vRniSqHe 495 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLM----------KVVRNISQHE 495 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHH----------HHHHHhhhcc
Confidence 99999888656665665444444567777 46666778888999999985544 222112 1222222222
Q ss_pred cCchh-HHHH---hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCC-CcccchhhHHHHHHHHcCCC-ChhHHHHHHH
Q 000124 339 GGMPA-LVVY---LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD-DEPFDARQIEDILVMLLKPH-DNKLVQERVL 412 (2138)
Q Consensus 339 Ggis~-LI~~---L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~-~~~~~~~~Ie~~LV~LL~s~-~~e~vr~~Aa 412 (2138)
|.... .|.+ |.......++..-....+|.++..- + ++-. ...+.....+|++...+.+. +.++.....+
T Consensus 496 g~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~--v---~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v 570 (791)
T KOG1222|consen 496 GATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLK--V---TDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV 570 (791)
T ss_pred chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcc--c---CCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence 21211 2333 3344555555444455555554321 0 1111 23345556779998888775 3344778888
Q ss_pred HHHHHhhcCchhHHHHhhhchHHHHHHHHcc--CCHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHHHHhcCCchh
Q 000124 413 EAMASLYGNIFLSQWVSHAEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 413 ~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s--ss~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV~LL~s~d~~ 489 (2138)
.+++.++++.++...+...+.+..++.++.. .+.+...+.+..+..+..+ ...+..++ +...-..++.++...+..
T Consensus 571 i~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~e 649 (791)
T KOG1222|consen 571 IACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAE 649 (791)
T ss_pred HHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHH
Confidence 8899999999988888899999999999975 4567777777778888877 34444444 444455699999999999
Q ss_pred hHHHHHHHHHHHhhcCchh
Q 000124 490 HQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
+|+.+-.+|-.++.++.+-
T Consensus 650 iRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 650 IRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 9999999998888865443
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=125.17 Aligned_cols=115 Identities=14% Similarity=0.252 Sum_probs=89.4
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeec-CCC----C
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK-NTF----G 2084 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~-~~~----~ 2084 (2138)
.|.|.|.+|.+|-- +.||||.|.+ .|... +|+|+.++.||.|+|+|+|. ++|.=..+.|.|+.. +.+ +
T Consensus 12 sL~v~V~EAk~Lp~---~~~~Y~~i~L-d~~~vaRT~v~~~~~nP~W~E~F~f~--~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPP---KKRYYCELCL-DKTLYARTTSKLKTDTLFWGEHFEFS--NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCC---cCCceEEEEE-CCEEEEEEEEEcCCCCCcceeeEEec--CCCcccEEEEEEEEccCccccccC
Confidence 48999999999943 3489999999 55554 79999999999999999994 343346799999533 444 4
Q ss_pred CcccceEEEEecceeecceecceeecCCCCCCC--------CCccceEEEEEecC
Q 000124 2085 KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKD--------SSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~w~~ 2131 (2138)
-+.+|+|.|.+++|.....+..+|+|.+.+.+. +...+|.|.+++.+
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 479999999999999888899999999995443 22344556666654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-11 Score=127.75 Aligned_cols=103 Identities=16% Similarity=0.275 Sum_probs=77.7
Q ss_pred CceEEEEEecccccccc----cCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCC-CCeEEEEEee
Q 000124 2009 PGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKS 2079 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~ 2079 (2138)
-|-|+|+|++|.||... .+..||||++.+..+..| ||+|+++++||+|||.|.|.+...=+ +-.|.++||+
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 47799999999999332 256899999999665433 79999999999999999997542211 4579999999
Q ss_pred cCCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.|| .+.+|+|.+.+.. ...+...+..+..+
T Consensus 94 ~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred CCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 99996 5689999999864 22233444444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-11 Score=127.60 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=82.6
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCC-CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~-p~~~~l~~~~~~~ 2080 (2138)
.|-|+|+|++|.||. +.-|..||||++.+..++ +|||+|++++.||+|||+|.|.+..- .....|++.||++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 388999999999994 444789999999995432 45799999999999999999987532 2456899999999
Q ss_pred CCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+ .++.+|.|.|.+...- .++...+|.+...
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~ 126 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKES 126 (138)
T ss_pred CCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhC
Confidence 877 6678999999886432 3345677888766
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-07 Score=115.51 Aligned_cols=657 Identities=15% Similarity=0.139 Sum_probs=351.6
Q ss_pred CcHHHHHHHHh---cCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh---ccCCHHHHHHHHHHHHHhhcCCC
Q 000124 84 QAMPLFISILR---SGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL---KSESTDTRKAAAEALYEVSSGGL 157 (2138)
Q Consensus 84 GgVp~LV~LLk---s~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL---~sed~eVr~aAa~AL~nLS~~~~ 157 (2138)
.|+..+.++|+ |++++++.++...|-.+-..++-. -.|+=+| ++++..+|..|--.|.|=-..+.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfn---------nYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFN---------NYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchh---------ceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 46777777776 468888888888876663333211 1111122 23466666666666665443322
Q ss_pred CCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHH-HHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHH
Q 000124 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGAL-RNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSN 235 (2138)
Q Consensus 158 nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL-~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~ 235 (2138)
+........+++..+++.+ .. .++-++ ...+.+ ..+.+.. -..| ..+++.|+.+|.+++...++.
T Consensus 81 ~~~~~~~~~yiKs~~l~~l----gd---~~~lIr-~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d~n~~Eg 147 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGL----GD---ASPLIR-ATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPDYNTCEG 147 (885)
T ss_pred cCCChHHHHHHHHHHHhhc----cC---chHHHH-hhhhheeeeeecccccccc-----hhHHHHHHHHhcCCcccccch
Confidence 2122222333343333322 11 122222 222222 2222211 1112 236899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcch-hhc---cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhc
Q 000124 236 AASLLARLMLAFGDSIPT-VID---SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2138)
Q Consensus 236 A~~aL~nLs~~~~e~r~~-l~~---~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~ 311 (2138)
|..+|+.+|.++.+.-.. ..+ .-.+|.+++.+++ +++.+|..|..++-......+..- ...-+.-++.+..+-.
T Consensus 148 A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalan 225 (885)
T KOG2023|consen 148 AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALAN 225 (885)
T ss_pred hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHcc
Confidence 999999999543322111 001 1368889999985 467999999888877655322111 1111334555555555
Q ss_pred CCchhhhhhhhhhhhHHHHHHHHHHhhcCchh-HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhh
Q 000124 312 APSKECMQGQRGQALQGHATRALANIYGGMPA-LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390 (2138)
Q Consensus 312 s~s~e~mq~~~~~alqe~Al~ALanIsGgis~-LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~ 390 (2138)
+++++ ++.+...+|..+-...+. +++ .-.+
T Consensus 226 D~~~e---------VRk~vC~alv~Llevr~dkl~p----------------------------------------hl~~ 256 (885)
T KOG2023|consen 226 DEDPE---------VRKNVCRALVFLLEVRPDKLVP----------------------------------------HLDN 256 (885)
T ss_pred CCCHH---------HHHHHHHHHHHHHHhcHHhccc----------------------------------------chHH
Confidence 66555 556666665554321110 000 0113
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh--chHHHHHH----------HHccC--------------
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIG----------LITMA-------------- 444 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~--~gI~~LV~----------LL~ss-------------- 444 (2138)
+++++.......+.. +-..|+.-...++..+.+...+... ..++.|+. |+.+.
T Consensus 257 IveyML~~tqd~dE~-VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk 335 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDEN-VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIK 335 (885)
T ss_pred HHHHHHHHccCcchh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhcc
Confidence 333443333333332 4444444444444444222222211 12222222 11100
Q ss_pred --------------------------------CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHH
Q 000124 445 --------------------------------TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQE 492 (2138)
Q Consensus 445 --------------------------------s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~ 492 (2138)
+...|+..+.+|--++.-- +..+. .-.+|.|.+.|.+++..+|+
T Consensus 336 PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL-~~l~PlLk~~L~~~~W~vrE 411 (885)
T KOG2023|consen 336 PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELL-PILLPLLKEHLSSEEWKVRE 411 (885)
T ss_pred chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHH-HHHHHHHHHHcCcchhhhhh
Confidence 0124444444444433210 00110 12356666777788889999
Q ss_pred HHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCCcchhhhccc
Q 000124 493 YAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLK 568 (2138)
Q Consensus 493 ~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~--sd~~r~~I~e~GaI~aLv~LLk 568 (2138)
.++-+|+.++.+.-+ -++. ...+|.|+.+|.+..+-+|..+||+|+..+.. .+...+.+ ...+..|++.+-
T Consensus 412 agvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~ll 486 (885)
T KOG2023|consen 412 AGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLL 486 (885)
T ss_pred hhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHh
Confidence 999999999863211 1111 13577888899999999999999999998762 11111111 112333444455
Q ss_pred cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC--------CCcchHHHHHHHHHHHHhh----hcchHHHHhhhccc
Q 000124 569 SGGPKGQDASAMALTKLIRAADSATINQLLALLLG--------DSPSSKAHVIKVLGHVLTM----ALQEDLVQKGSAAN 636 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~--------~d~~V~~~A~~AL~~La~~----~~~~d~v~~~l~~~ 636 (2138)
+++..+|+.|+.++.-+-..+..+.+|.|-.+|.. ...+. .-...|++.|+.. .+++..++..
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiL---- 561 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQIL---- 561 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHh----
Confidence 78999999999999998877666666665555431 11111 1134566666533 2334333332
Q ss_pred chhhHHHH---hhcCC-------------------------CHHHHHHHHHHHHHH----hhc-----------------
Q 000124 637 KGLRSLVQ---VLNSS-------------------------NEENQEYAASVLADL----FSM----------------- 667 (2138)
Q Consensus 637 GaI~aLV~---LLks~-------------------------s~evre~Aa~ALanL----~s~----------------- 667 (2138)
+++|++ +++++ .+++-..+.+.+.+- ...
T Consensus 562 --mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~s 639 (885)
T KOG2023|consen 562 --MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVS 639 (885)
T ss_pred --ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEe
Confidence 344433 22222 244444555554422 110
Q ss_pred -----------ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC
Q 000124 668 -----------RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2138)
Q Consensus 668 -----------~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~ 736 (2138)
.......+.+.+...-+...+.|..++||..|-.-|+.++...++ ..+- .-+..++.|-.-++..
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p--~~~~fl~~lg~Nl~~~ 715 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIP--NLADFLPILGANLNPE 715 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccc--hHHHHHHHHhhcCChh
Confidence 011112234556677777888999999999888888888863222 1111 1122333333334456
Q ss_pred CHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhH
Q 000124 737 SIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav 812 (2138)
...+..+|++|++-++. ..+....+ ...+..|+..++.. ...+-++.+-.+++|+...| +.+. ... ...+
T Consensus 716 ~isv~nNA~WAiGeia~k~g~~~~~~v--~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P--e~vA-p~l-~~f~ 789 (885)
T KOG2023|consen 716 NISVCNNAIWAIGEIALKMGLKMKQYV--SPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP--EEVA-PHL-DSFM 789 (885)
T ss_pred hchHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH--Hhcc-hhH-HHHH
Confidence 67888999999999975 22322222 22455555555544 35688999999999998764 3332 222 3345
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 813 LTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 813 ~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
.+-...++.-+++ ..+..|.+-+.++-.
T Consensus 790 ~pWc~sl~~i~Dn-eEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 790 RPWCTSLRNIDDN-EEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHHhcccccc-hhHHHHHHHHHHhee
Confidence 5555666544333 458889998888775
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-05 Score=104.16 Aligned_cols=490 Identities=17% Similarity=0.135 Sum_probs=267.4
Q ss_pred CChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHH-ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI-TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 402 ~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL-~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
..+..+|++++.+++.+..+.. .+...+-...|.-++ +.+++-.+..|+.++..++...-..-..-.-..+++.+.
T Consensus 581 d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 3344599999999988744321 111111122233333 235677889999999988876433321112245678888
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
+.++......|.....++-.|..+..+.-..-.-.-.+..+-.++...+..+-..|...|..+.......- .-.....+
T Consensus 658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL 736 (1233)
T KOG1824|consen 658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPIL 736 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhH
Confidence 88887777778777777777665321111000001122223334445577788888888888876433221 22335567
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHh----hchhh-HHHHHHHhcCCCcc-----hHHHH----HHHHHHHHhhhcch
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRA----ADSAT-INQLLALLLGDSPS-----SKAHV----IKVLGHVLTMALQE 626 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~----~e~~a-I~~Li~LL~~~d~~-----V~~~A----~~AL~~La~~~~~~ 626 (2138)
+.++.+++|+ -++..+..++.++... ...+. ...+..++.....+ ...++ +.|.+.|....+.
T Consensus 737 ~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~- 813 (1233)
T KOG1824|consen 737 DEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQ- 813 (1233)
T ss_pred HHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccc-
Confidence 7788888764 5566666666666543 11111 55566666643322 22233 3344433322111
Q ss_pred HHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa 704 (2138)
. .......|++=++++ +..+|-.|.-.|+.+....+. ....+.-..+++.+.+.+++++.+|+.||+
T Consensus 814 -~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 814 -K------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred -c------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 0 011244455544433 566777888888887663111 112234446778889999999999999999
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhC----CC
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAE----GT 778 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~----~~ 778 (2138)
+++.++-+ ..++-++....+.. .-+.--+..|-.... ..+ .....++.+..+|.. ..
T Consensus 883 sl~vgnl~-----------~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 883 SLAVGNLP-----------KYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred hhhcCchH-----------hHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccch
Confidence 99873322 25566666665532 112222222222111 011 112234445554432 24
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccccccc
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2138)
+..|.-.++||+.|+...| ....++|-..++++.... +.-++.+..+.-+. .+..++ .-
T Consensus 946 egtR~vvAECLGkL~l~ep-----------esLlpkL~~~~~S~a~~~--rs~vvsavKfsisd--~p~~id------~~ 1004 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEP-----------ESLLPKLKLLLRSEASNT--RSSVVSAVKFSISD--QPQPID------PL 1004 (1233)
T ss_pred hhhHHHHHHHhhhHHhCCh-----------HHHHHHHHHHhcCCCcch--hhhhhheeeeeecC--CCCccC------HH
Confidence 5568889999999998653 557788888887665443 44444443333221 223332 00
Q ss_pred CCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH--Hhccc
Q 000124 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI--CAAKE 936 (2138)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i--~a~k~ 936 (2138)
...-+..+...+.+++..+|+-|+.++.....+.| .+|..|...++---..|..+.. -+| .=...
T Consensus 1005 lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-----------slIrDllpeLLp~Ly~eTkvrk--elIreVeMGP 1071 (1233)
T KOG1824|consen 1005 LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-----------SLIRDLLPELLPLLYSETKVRK--ELIREVEMGP 1071 (1233)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-----------hHHHHHHHHHHHHHHHhhhhhH--hhhhhhcccC
Confidence 12246678888999999999999999999887766 4556666555422222211111 111 12334
Q ss_pred chhhHHHHHhhcCCcHHHHHHHHH
Q 000124 937 HKKQSMDALDLSGYLKPLIYALVD 960 (2138)
Q Consensus 937 ~~~~~~~~L~~~g~~~~~i~~Lv~ 960 (2138)
|.-+.=++|+.-.++=.-++.|+|
T Consensus 1072 FKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1072 FKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ccccccchHHHHHHHHHHHHHHHH
Confidence 544555555444444444454443
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=113.79 Aligned_cols=80 Identities=30% Similarity=0.568 Sum_probs=70.9
Q ss_pred EEEEEeccccccc--ccCCCCceEEEEecCCCC--ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|+|++|.||.. ..+..||||++.+...+. ++|++++.+.+|.|||+|.|.+..++..+ |+|+||+++.++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-LSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-EEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-eEEEEEECCCCCCCC
Confidence 7899999999944 558999999999966665 67999999999999999999998886666 999999999998 88
Q ss_pred ccceEE
Q 000124 2087 TLGKVT 2092 (2138)
Q Consensus 2087 ~~g~~~ 2092 (2138)
.+|+|.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 899873
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-07 Score=111.23 Aligned_cols=372 Identities=14% Similarity=0.144 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
.-.-|..-|.+++.+-.....+.....+.+|+..+..++.+...-....|..++-- .+++..+.+.|.+..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC
Confidence 33455566788888888878888889999999999999999888888999999887 57888888899999999999999
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
+++.+...+..|-|++. +...|..++..|.+|.|+.+|.+... ...|...|..+++ ++..+.++....+|+.+.+.
T Consensus 358 h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 67889999999999999999977533 3457788888887 56778888999999999865
Q ss_pred ccc-CChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhcccc
Q 000124 567 LKS-GGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSAANK 637 (2138)
Q Consensus 567 LkS-~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d~v~~~l~~~G 637 (2138)
+-+ .+.++-........|++.... -..+..|++..-...+- .....++++++... ....+- +
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fi------d 504 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFI------D 504 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHH------H
Confidence 443 344554444445557765421 22344444443222222 23344555554322 111111 2
Q ss_pred hhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCccc
Q 000124 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 638 aI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--s~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
.+..|...++.. +++--..+.+.|+||...+-+-...+-+...+|-+-..|..+ .++......-+++.+++ ..
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~-- 580 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL-- 580 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh--
Confidence 466677777666 445566788999999875566666666678888888888765 33456666666677665 21
Q ss_pred chhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcC-cHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 715 TNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLED-VVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g-~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
....-+..+++|+.|+.+|+. .+++..-+...++..+..+...|..++++. .-..++.+|++.+.++|+-+-.+|--
T Consensus 581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344445678899999999987 566777778888888887877777776655 45668899999999999998888877
Q ss_pred hhhcC
Q 000124 792 LLKHF 796 (2138)
Q Consensus 792 L~~~~ 796 (2138)
++.+.
T Consensus 661 iae~d 665 (791)
T KOG1222|consen 661 IAEHD 665 (791)
T ss_pred HHHhh
Confidence 77653
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=116.77 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=78.4
Q ss_pred CCceEEEEEecccccccc--cCCCCceEEEEecCCC----CccccccccCC-CCCccccceeeecCCCCCC-eEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP----PRQTKVVSHSI-SPEWKEGFTWAFDVPPKGQ-KLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~t~~~~~~~-~p~w~~~f~~~~~~~p~~~-~l~~~~~~ 2079 (2138)
.+|-|+|+|++|-||.-. -+..||||++.+-.+. +|||+|+++++ +|.|||+|.|.+..+ ..+ .|.|+||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~-~~~v~l~v~v~d 90 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ-EHGIQFLIKLYS 90 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch-hheeEEEEEEEe
Confidence 578999999999999542 2556999999774322 34699999997 589999999999754 444 78999999
Q ss_pred cCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.+ ++|.+|+|.+-.+.. .......+.....+
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~ 124 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN 124 (135)
T ss_pred CCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence 9876 677899999988753 22234555555554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-09 Score=106.69 Aligned_cols=92 Identities=28% Similarity=0.558 Sum_probs=78.9
Q ss_pred eEEEEEecccccccc--cCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-C
Q 000124 2011 CLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-K 2085 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k 2085 (2138)
.|.|+|+.++|+... .+..||||++.+... ..++|+++.++.||.|||+|.|.+..+. ++.|.|+||+++.++ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCC
Confidence 378999999999544 247999999999544 3678999999999999999999998775 999999999998885 8
Q ss_pred cccceEEEEecceeecce
Q 000124 2086 STLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~ 2103 (2138)
..+|++.|.++++..+.+
T Consensus 80 ~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 80 DFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred ceeEEEEEEHHHcccCcc
Confidence 899999999998876554
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00018 Score=94.02 Aligned_cols=736 Identities=13% Similarity=0.107 Sum_probs=358.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
..+..++++|.+.+.+++..|.++|+-|.+ -.+.+.+ -.+..|+.-+-++-...|.-+.-.|...-.+- ++
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl-~P--- 118 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANL-PP--- 118 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcC-CC---
Confidence 468899999999999999999999998862 2222211 12344443332322333333333332222110 00
Q ss_pred hHHHHHHcCcHHHHHHhhCCCC-C--CChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKN-K--QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s-~--ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~a 239 (2138)
....+....+.+.+...+.... . ....++..++..+.-+-+.--+-..- .+.+-...++.-+.+....++..++.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 0112233344555554443321 0 11224444444444433322111111 233445556666677778899999999
Q ss_pred HHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhh
Q 000124 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319 (2138)
Q Consensus 240 L~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq 319 (2138)
|..++... ....-.+.+..|++-|.+......-+.-..+|..++. ....|..-.-...++.+.+++..-..
T Consensus 198 l~~la~~~----~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r-~ag~r~~~h~~~ivp~v~~y~~~~e~---- 268 (1233)
T KOG1824|consen 198 LGHLASSC----NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR-QAGHRFGSHLDKIVPLVADYCNKIEE---- 268 (1233)
T ss_pred HHHHHHhc----CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH-HhcchhhcccchhhHHHHHHhccccc----
Confidence 99998432 2233445777777777643332222222333333333 12223222335678888888833211
Q ss_pred hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHc
Q 000124 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL 399 (2138)
Q Consensus 320 ~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL 399 (2138)
..+.+++.++++|...-..-+. +.+.+. .+-.--.+..+.| ||......- ++.....+-.-=
T Consensus 269 --~dDELrE~~lQale~fl~rcp~------ei~p~~--pei~~l~l~yisY-------DPNy~yd~~-eDed~~~~ed~e 330 (1233)
T KOG1824|consen 269 --DDDELREYCLQALESFLRRCPK------EILPHV--PEIINLCLSYISY-------DPNYNYDTE-EDEDAMFLEDEE 330 (1233)
T ss_pred --CcHHHHHHHHHHHHHHHHhChh------hhcccc--hHHHHHHHHHhcc-------CCCCCCCCc-cchhhhhhhccc
Confidence 1122778888776553211110 000000 0000111112222 122111100 001111111000
Q ss_pred ------CCCC----hhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccc----
Q 000124 400 ------KPHD----NKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV---- 464 (2138)
Q Consensus 400 ------~s~~----~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~---- 464 (2138)
...+ .+.+|+.++.++..+ ..+.+.-..+... .-+.++.-+....+.++.....++..+-.+.+
T Consensus 331 Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~ 409 (1233)
T KOG1824|consen 331 DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIALLKQTRPVIE 409 (1233)
T ss_pred cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc
Confidence 0011 134788888888766 3333322222221 11334555555455555555544443332211
Q ss_pred --------------hhhHHhhhc--hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhh
Q 000124 465 --------------GIWEAIGKR--EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLE 526 (2138)
Q Consensus 465 --------------~~~~~I~e~--ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLk 526 (2138)
...+.+.+. ..+..+-+.+++.+...+..+...|..+....++. ..+ ...+|.+...|.
T Consensus 410 ~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~---l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 410 VLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA---LAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred cccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch---hhhcccccchhhhhhcC
Confidence 111111100 01222333445555556666666666665533221 111 234666666675
Q ss_pred hC--CHHHHHHHHHHHHHHh-cCChhHHHHHHHcCCcchh----hhccccCChhHHHHHHHHHHHHHHhh----------
Q 000124 527 AG--SQKAREVAAHVLWILC-CHSEDIRACVESAGAVPAF----LWLLKSGGPKGQDASAMALTKLIRAA---------- 589 (2138)
Q Consensus 527 s~--d~~vre~Aa~aL~nLs-~~sd~~r~~I~e~GaI~aL----v~LLkS~~~evq~~Aa~AL~nLs~~~---------- 589 (2138)
+. +...+..+...|.++- .++.+ .+ +.-+++| +....+.-+.+...|..++..+...-
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~--~f---hp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d 561 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPE--VF---HPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFD 561 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChh--hc---ccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCC
Confidence 44 5666777776666653 33221 11 2223333 33334455667777777776666431
Q ss_pred ---c-hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 590 ---D-SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 590 ---e-~~aI~~Li~LL~--~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
. ...+..-++.|+ +.|++|++.+..|++.+...-. |..+.. -+..++.+++-+ +++-+|-.|++|+.-
T Consensus 562 ~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D~l~~e--L~~~L~il~eRl--~nEiTRl~AvkAlt~ 635 (1233)
T KOG1824|consen 562 ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--DFLGNE--LPRTLPILLERL--GNEITRLTAVKALTL 635 (1233)
T ss_pred CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hhhhhh--hHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 0 123344455554 5677899999999988765433 222221 112344444433 588899999999999
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
++...-..-..-+-..+++.+...++......|.....++-.|..+... .......+ -++..+..|+...+..+.+.
T Consensus 636 Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~--~~~~~~~e-~vL~el~~Lisesdlhvt~~ 712 (1233)
T KOG1824|consen 636 IAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSD--SIPAELLE-AVLVELPPLISESDLHVTQL 712 (1233)
T ss_pred HHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHH-HHHHHhhhhhhHHHHHHHHH
Confidence 9874333222333345778888888887777787777777776652111 11111111 13444556666677788888
Q ss_pred HHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCH------------------------------------------HH
Q 000124 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS------------------------------------------EG 781 (2138)
Q Consensus 744 Al~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~------------------------------------------~V 781 (2138)
|...|+.+...+.....-.....++.++.++++.-- .+
T Consensus 713 a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l 792 (1233)
T KOG1824|consen 713 AVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGL 792 (1233)
T ss_pred HHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccch
Confidence 888888886543322222222233333333322211 11
Q ss_pred ----HHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccc
Q 000124 782 ----KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALA 857 (2138)
Q Consensus 782 ----r~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~ 857 (2138)
-...+.|.+.|+..++ + .....+.+|+.-+.+.+.....+.-|+-.+|.+.+-+... .
T Consensus 793 ~kqa~~siA~cvA~Lt~~~~--~------~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~------- 854 (1233)
T KOG1824|consen 793 HKQAYYSIAKCVAALTCACP--Q------KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---P------- 854 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcc--c------cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---c-------
Confidence 1112233333333221 0 0123455555555555544444555555555555321110 0
Q ss_pred cCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 858 EVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 858 ~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
.+..-..+++.+.+++..++.+|..+|.++..++
T Consensus 855 -~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 855 -QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred -chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 1223346788999999999999999999987755
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-08 Score=115.46 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=156.7
Q ss_pred cccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 634 AANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+++.++.|+.+|+.. ++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.++++.+|..|..||.|++.. .
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--D 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--h
Confidence 4566789999999864 89999999999999887 788999999999999999999999999999999999999862 2
Q ss_pred ccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
+++..+.. .+..+++...+ -+.+++..++.+|.||+..++.+..+.. .++.+.+++..|+..+|..+.++|.
T Consensus 86 --en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 86 --ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred --hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444332 56666665544 3678999999999999988777766644 8999999999999999999999999
Q ss_pred HhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 791 QLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 791 nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
||+.+. .....+....+...++.+++. +.+......++....++..
T Consensus 160 nLS~np----~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 160 NLSENP----DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred HhccCH----HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 999974 444555555688899999964 4444556777777777764
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=112.91 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=160.9
Q ss_pred cchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch
Q 000124 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 386 ~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
+....+ +.|+.+|+...++.+++.+..++++.+..+..+..+.+.|++..+..++..+++.++..|..+|.+++.+ .+
T Consensus 9 l~~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 334344 6788888877666799999999999999999999999999999999999999999999999999999987 56
Q ss_pred hhHHhhhchhHHHHHHHhcCC--chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH
Q 000124 466 IWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL 543 (2138)
++..|. ..++.+.+...+. +..+|..++.+|.||+. ..+++..+ .+.++.++.+|.+|+..+|.++.++|.||
T Consensus 87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 666653 3566666644433 67899999999999987 34555554 34799999999999999999999999999
Q ss_pred hcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHh
Q 000124 544 CCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~ 588 (2138)
+.+.+..++++. .+++..++.++... +.+....+.+...|+..+
T Consensus 162 S~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 996666666655 67899999998775 678899999999999876
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-09 Score=129.21 Aligned_cols=106 Identities=25% Similarity=0.424 Sum_probs=90.0
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEec---CCCCcc-ccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG---NGPPRQ-TKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~-t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
----.|+|+|++|.|| .+-+|-.||||++.+- +++.|| ||.++.++||+|||+|+|-+-..-+.-+|.|||||-
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3455799999999999 8999999999999883 445554 999999999999999999999888889999999998
Q ss_pred C-CCCCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 N-TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~-~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
| |.+.+.||....-|.....+. .+|+|.|...
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ 289 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence 4 668999999999998877654 4677777654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-05 Score=98.21 Aligned_cols=655 Identities=15% Similarity=0.124 Sum_probs=333.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHH-h-ccCchhHHHHHhc---
Q 000124 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-L-CKDEDLRLKVLLG--- 124 (2138)
Q Consensus 52 s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~-L-s~~e~~r~~v~~~--- 124 (2138)
++|.-.+..|-..|..++..+ -.+.+..|.+.|... ++..|..|.-.|+| | ++++..+......
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~n---------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQN---------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 456666788888888887766 134667777777654 45666666666655 4 3444444433321
Q ss_pred ------CChH-HHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHH
Q 000124 125 ------GCIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVT 195 (2138)
Q Consensus 125 ------G~Ip-~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~--ed~~V~e~Al 195 (2138)
.-|+ .+++.|++..+.....|++++..++....+ .+.-|-|+..|.+... +...+++..+
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-----------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-----------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-----------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1122 344677766677778888888888864322 1233444444432211 1124788999
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHh-hcCCCcchhhccch-HHHHHHHhccCC
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLML-AFGDSIPTVIDSGA-VKALVQLVGQNN 271 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s--~s~evq~~A~~aL~nLs~-~~~e~r~~l~~~Ga-L~~LL~LL~s~s 271 (2138)
.+|+.+|.+-+.....-.....+-.++..+.. ++..+|..+.++|++=.. .......+. +..+ +...+..- +++
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~-ern~iMqvvcEat-q~~ 229 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM-ERNYIMQVVCEAT-QSP 229 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh-hhceeeeeeeecc-cCC
Confidence 99999999865541111122346667776654 467899999999987441 110111111 1111 11222222 367
Q ss_pred CHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhh
Q 000124 272 DISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2138)
Q Consensus 272 d~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~el 351 (2138)
+.+++..|..+|..+-+-.-+.-+......-...-+..+.+++.+ +...+++-=++++. ..
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de---------ValQaiEFWstice---EE------- 290 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE---------VALQAIEFWSTICE---EE------- 290 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHHH---HH-------
Confidence 889998888888877663111111111122222233333332222 11111221112221 00
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch---hhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHH
Q 000124 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA---RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWV 428 (2138)
Q Consensus 352 L~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~---~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L 428 (2138)
.++.... ..+. ++........|.. ..+.|.|..+|...+++ + +.
T Consensus 291 ----------iD~~~e~--~e~~-d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~-------------~-d~------ 337 (859)
T KOG1241|consen 291 ----------IDLAIEY--GEAV-DQGLPPSSKYFARQALQDVVPVLLELLTKQDED-------------D-DD------ 337 (859)
T ss_pred ----------HHHHHHH--HHHh-hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC-------------c-cc------
Confidence 0000000 0000 0000000111111 12234444433332211 0 00
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchh
Q 000124 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 429 ~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+...-+.|..+|.-++... +..|+ ...+|-+-+-++++|..-|+.|+.+++.+-......
T Consensus 338 ---------------DdWnp~kAAg~CL~l~A~~~---~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 338 ---------------DDWNPAKAAGVCLMLFAQCV---GDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred ---------------ccCcHHHHHHHHHHHHHHHh---cccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 01122334444444433321 11122 133444555677889999999999999988766667
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH-HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR-ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r-~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
+......+++|.++.++.+++--++..++|.|+.++.+..+.. ....-...++.+++-+. +.|.+-.+++|++.+|+.
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 7777778999999999998888899999999999976432110 00011222333333333 468899999999999985
Q ss_pred hhchhhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC---CCHHHHHHHHHHHH
Q 000124 588 AADSATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---SNEENQEYAASVLA 662 (2138)
Q Consensus 588 ~~e~~aI~~Li~LL~~~--d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks---~s~evre~Aa~ALa 662 (2138)
.... -..+. .+.....-.. .+..|++.... ...+.|..|-.+|.
T Consensus 478 a~~e--------A~~s~~qt~~~t~~y~~-----------------------ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 478 AAYE--------AAVSNGQTDPATPFYEA-----------------------IIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred HHHH--------hccCCCCCCccchhHHH-----------------------HHHHHHhhccccccchhhHHHHHHHHHH
Confidence 4210 00000 0000000000 01222221111 01233444444444
Q ss_pred HHhhcChhhhhhhhhCC---CHHHHHH-----HhccCC----HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHH
Q 000124 663 DLFSMRQDICGSLATDE---IVNPCMR-----LLTSNT----QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLI 730 (2138)
Q Consensus 663 nL~s~~~e~r~~Ive~G---aV~~Lv~-----LL~dgs----~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv 730 (2138)
.|....++.+-.++..- +...|-+ .+...+ .+++..-+.+|..+.+.... ..+. ....++..++
T Consensus 527 ElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~--~~d~iM~lfl 602 (859)
T KOG1241|consen 527 ELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIRE--VSDQIMGLFL 602 (859)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchh--HHHHHHHHHH
Confidence 44333333222221110 0011111 111111 12444444555555442111 1111 1223455666
Q ss_pred hhhhc-CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHH-hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 731 KLAKT-SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVL-AEGTSEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 731 ~LL~s-~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL-~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
.++.+ .+.-+.++|..+++.|+. .+...+.+ +...|.|..-| +..+..+...|+...+.|++.= .+++. .
T Consensus 603 ri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL--~~~i~--p 676 (859)
T KOG1241|consen 603 RIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL--EDDIL--P 676 (859)
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH--Hhhhh--h
Confidence 77777 556677788888888765 23323332 23556666656 4456789999999999999742 12222 2
Q ss_pred hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 807 QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
-|.+....|++.|.+...++.++-..+...|.++.
T Consensus 677 y~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 677 YCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHHHHHHHHHHccCccccccccchHHHHHHHHHH
Confidence 24778899999999888888889889988888874
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-06 Score=109.47 Aligned_cols=470 Identities=13% Similarity=0.059 Sum_probs=289.8
Q ss_pred HHHHHHcCCCChhHHHHHHHHHH-HHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAM-ASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL-~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.-|...|.+.+.. .+..+++.+ ..+..+.++.. ...-++.++.+.+..+++-+--+|.+.+..+++...
T Consensus 35 ~ELr~~L~s~~~~-~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal--- 104 (746)
T PTZ00429 35 AELQNDLNGTDSY-RKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL--- 104 (746)
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH---
Confidence 3455566666554 344454433 44433333322 234466688888888888888888888876554321
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
-.+..+.+=+.+.|+.+|..|++.++++.. ++.- .-.++++.+.|.+.++.+|+.|+-++..+-..+.
T Consensus 105 --LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--- 172 (746)
T PTZ00429 105 --LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--- 172 (746)
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---
Confidence 246778888889999999999999988765 2211 1245667788888999999999999999865333
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~ 625 (2138)
+.+.+.+-++.|.+++.+.++.++.+|..+|..+..... ...+..|+..+.+-++-.+....+.|... ...+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ-RPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCc
Confidence 233446677888899999999999999999999975421 23344455555554554555555555331 11112
Q ss_pred hHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000124 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2138)
Q Consensus 626 ~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~-~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa 704 (2138)
.+. ...+..+...+++.++.+...|++++.++.... ++....+ -.....+++.++ ++++.+|-.+.+.|.
T Consensus 252 ~e~-------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 252 ESA-------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIH 322 (746)
T ss_pred HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHH
Confidence 111 235778888899999999999999999987532 2221111 112336677764 567789988888887
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
-+....+. +... -+..+....++ +..++...+..|..|+.... ... .+..|..+..+.+.+.+++
T Consensus 323 ~i~~~~P~-------lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~N-v~~-----IL~EL~eYa~d~D~ef~r~ 387 (746)
T PTZ00429 323 ALLVIFPN-------LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVTPSV-APE-----ILKELAEYASGVDMVFVVE 387 (746)
T ss_pred HHHHHCHH-------HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcCccc-HHH-----HHHHHHHHhhcCCHHHHHH
Confidence 77652221 2222 13333333343 45689999999999985433 233 3356888888999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccC-------------------
Q 000124 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQG------------------- 845 (2138)
Q Consensus 785 Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~------------------- 845 (2138)
++.++++++...+ .. ....+..|+++++...+ ...+++.++..+-+.-+.
T Consensus 388 aIrAIg~lA~k~~---~~-----a~~cV~~Ll~ll~~~~~---~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~ 456 (746)
T PTZ00429 388 VVRAIASLAIKVD---SV-----APDCANLLLQIVDRRPE---LLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEE 456 (746)
T ss_pred HHHHHHHHHHhCh---HH-----HHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccH
Confidence 9999999997542 11 14567778888864322 244566666666431111
Q ss_pred CcccCCccccccc---C---CCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHH-hccC
Q 000124 846 LNFTYPPWAALAE---V---PSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRI-MHSS 918 (2138)
Q Consensus 846 ~~~i~~~~~~~~~---~---~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~i-l~s~ 918 (2138)
..+..-.|..++= . +.-++.++.-..++++.+|...+....+++...|. + ....+..++... -+++
T Consensus 457 ~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~---~----~~~~l~~vL~~~t~~~~ 529 (746)
T PTZ00429 457 EAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ---G----MEPQLNRVLETVTTHSD 529 (746)
T ss_pred HHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH---H----HHHHHHHHHHHHHhcCC
Confidence 0111124555441 1 11222333333456677887888888877776652 0 112233444333 3455
Q ss_pred Cceeehhhh
Q 000124 919 SLEVRVGGA 927 (2138)
Q Consensus 919 ~~ev~~~~~ 927 (2138)
+.+||==+-
T Consensus 530 d~DVRDRA~ 538 (746)
T PTZ00429 530 DPDVRDRAF 538 (746)
T ss_pred ChhHHHHHH
Confidence 667765554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-06 Score=104.34 Aligned_cols=619 Identities=17% Similarity=0.142 Sum_probs=331.1
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc--------CcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE--------GVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 125 G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea--------G~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
.++|.|..+|.++|....+.|..+|..+|.. . ..+.+. -.+|.+++..++++ +.++.+|+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcED-----s---a~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~ 196 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICED-----S---AQFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVG 196 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhh-----h---HHHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHh
Confidence 4578999999999989999999999999963 1 122222 26888999988765 678999998
Q ss_pred HHHHHhcCCCchhHHHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 197 ALRNLCGDKDGYWRATLEA-GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 197 aL~nLcs~~e~r~~aI~e~-GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
++-..--.... ..+.+- .-++.+..+-...++++|.+.|++|.-|....++...... .+.+.+.+..-+ +.+..+
T Consensus 197 cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tq-d~dE~V 272 (885)
T KOG2023|consen 197 CVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQ-DVDENV 272 (885)
T ss_pred hhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHcc-CcchhH
Confidence 88766543221 122211 1244444555667899999999999999966554332221 357777777766 567788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHh--cCCHHHHHHhhcCCchhh----------hhhhhhhhhHHHHHHHHHHhhcCchh
Q 000124 276 RASAADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKEC----------MQGQRGQALQGHATRALANIYGGMPA 343 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~e--~ggL~~LI~LL~s~s~e~----------mq~~~~~alqe~Al~ALanIsGgis~ 343 (2138)
...|+.....++.. +..+..+.. ..-+|.|+.-+.-...+. ......+.++-+-...=....+....
T Consensus 273 ALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 273 ALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 88999999888884 555554433 455566655442211110 00000000000000000000000000
Q ss_pred HHHHhhhhcCCCCc-----hhh-HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 000124 344 LVVYLGELSQSPRL-----AAP-VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2138)
Q Consensus 344 LI~~L~elL~~~~s-----s~~-~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~ 417 (2138)
-=..-.+-..+.+. -++ .|..+..++... ..+.+ ..+.|.|...+.+ +...+|+..+-++|.
T Consensus 352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---------~~elL--~~l~PlLk~~L~~-~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---------GDELL--PILLPLLKEHLSS-EEWKVREAGVLALGA 419 (885)
T ss_pred cccccccccccccccccccHhhccHHHHHHHHHhh---------HHHHH--HHHHHHHHHHcCc-chhhhhhhhHHHHHH
Confidence 00000000000000 011 123333333211 00111 1233566666655 456689999999998
Q ss_pred hhcCc--hhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc--chhhHHhhhchhHHHHHHHhcCCchhhHHH
Q 000124 418 LYGNI--FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLGLSSEQHQEY 493 (2138)
Q Consensus 418 L~~n~--~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s--~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~ 493 (2138)
++++- ..-..+. ..+++++.++.+..+-+|.-.+++|...+..- .+....+ ...+..|++.+-+++..+|+.
T Consensus 420 IAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHH
Confidence 86431 1111111 35788999999999999999999998877531 1111111 234455566666789999999
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh----------CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA----------GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 494 Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks----------~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
|+.++..+-... . ...+|.|-.+|.+ .+--+.-.|.++|..=..+.-..++.+ .-.+|+|
T Consensus 496 AcsAfAtleE~A-~-------~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPL 565 (885)
T KOG2023|consen 496 ACSAFATLEEEA-G-------EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPL 565 (885)
T ss_pred HHHHHHHHHHhc-c-------chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHH
Confidence 999988775421 1 1223333333321 233445556666655432211112211 2247777
Q ss_pred h---hccccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh-cCCC--------cchHHHHHHHHH
Q 000124 564 L---WLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL-LGDS--------PSSKAHVIKVLG 617 (2138)
Q Consensus 564 v---~LLkS~~~evq~~Aa~AL~nLs~~~e--------------~~aI~~Li~LL-~~~d--------~~V~~~A~~AL~ 617 (2138)
+ .+++++++++- --..+|..++..-. -..+....+++ +... .+.-.-+...++
T Consensus 566 i~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 566 IEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 7 36666665431 11222222222110 11122112222 1111 111111334444
Q ss_pred HHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh----ccCCH
Q 000124 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL----TSNTQ 693 (2138)
Q Consensus 618 ~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL----~dgs~ 693 (2138)
.|+..... ++...+..++....+.+.+++..+++|+.+...|+.++....+.. . +-+..++.++ ....-
T Consensus 645 GLaegLg~--~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v----~-p~~~~fl~~lg~Nl~~~~i 717 (885)
T KOG2023|consen 645 GLAEGLGS--HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV----I-PNLADFLPILGANLNPENI 717 (885)
T ss_pred HHHHHhhh--chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc----c-chHHHHHHHHhhcCChhhc
Confidence 44432111 233345566777778888899999999999999999986432221 1 2223333333 23344
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHH
Q 000124 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSAL 770 (2138)
Q Consensus 694 ~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~L 770 (2138)
.+..+|.||++.++.... ......-..++..|+..++. .+..+.++.+-+++.|.. +|+.-.-..+ ..+.+-
T Consensus 718 sv~nNA~WAiGeia~k~g----~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~-~f~~pW 792 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIALKMG----LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD-SFMRPW 792 (885)
T ss_pred hHHHHHHHHHHHHHHHhc----hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH-HHHHHH
Confidence 688899999999986221 11112222345555556665 345677788888888876 5553222111 123333
Q ss_pred HHHHh-CCCHHHHHHHHHHHHHhhhcCCC
Q 000124 771 TRVLA-EGTSEGKKNASRALHQLLKHFPV 798 (2138)
Q Consensus 771 V~LL~-~~~~~Vr~~Aa~AL~nL~~~~~~ 798 (2138)
..-++ -++.+-|+.|-+-++++....|.
T Consensus 793 c~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 793 CTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHhcccccchhHHHHHHHHHHheeeCch
Confidence 32233 34677899999999999876653
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-05 Score=102.03 Aligned_cols=503 Identities=13% Similarity=0.075 Sum_probs=305.6
Q ss_pred cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000124 170 EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGD 249 (2138)
Q Consensus 170 aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e 249 (2138)
.|=+..|-+.|.+.+ ...-++...+++.++..+.+-. .+.+.+++++.+.+.+++.-+.-.+.+.+..+++
T Consensus 31 kge~~ELr~~L~s~~--~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTD--SYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence 344556666665543 1223445555677776664422 1566777888888888888887777777643332
Q ss_pred CcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHH
Q 000124 250 SIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGH 329 (2138)
Q Consensus 250 ~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~ 329 (2138)
. ..-++..+.+=+. ++++.+|..|..++.++-.. +.-..+ ++.+.+.+.++++. ++..
T Consensus 102 l-----alLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~~--~i~e~l-----~~~lkk~L~D~~pY---------VRKt 159 (746)
T PTZ00429 102 K-----ALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRVS--SVLEYT-----LEPLRRAVADPDPY---------VRKT 159 (746)
T ss_pred H-----HHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCcH--HHHHHH-----HHHHHHHhcCCCHH---------HHHH
Confidence 1 1235666666666 46778998888877776552 222222 24455556666544 6677
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~ 409 (2138)
|.-|+.+++... + +.+...+..+.|..++...+.. +..
T Consensus 160 Aalai~Kly~~~-------------------------------------p----elv~~~~~~~~L~~LL~D~dp~-Vv~ 197 (746)
T PTZ00429 160 AAMGLGKLFHDD-------------------------------------M----QLFYQQDFKKDLVELLNDNNPV-VAS 197 (746)
T ss_pred HHHHHHHHHhhC-------------------------------------c----ccccccchHHHHHHHhcCCCcc-HHH
Confidence 777777765211 1 1122334456677777776654 788
Q ss_pred HHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchh
Q 000124 410 RVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 410 ~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~ 489 (2138)
.|+.+|..+...... ..-...+.+..++..+..-++-.|......|....-. .... ....+..+...+++.|+.
T Consensus 198 nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~---~~~e--~~~il~~l~~~Lq~~N~A 271 (746)
T PTZ00429 198 NAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS---DKES--AETLLTRVLPRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC---CcHH--HHHHHHHHHHHhcCCCHH
Confidence 888888888543211 1111233345566666666777788888777553222 1111 124567778888899999
Q ss_pred hHHHHHHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc
Q 000124 490 HQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk 568 (2138)
|...|+.++.++....+ +....+. ....++|+.+ .++++++|-.+...+..+.... ...+.. -+..+....
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf~~--~~~~Ff~~~- 343 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLLRT--NLDSFYVRY- 343 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHHHH--HHHhhhccc-
Confidence 99999999999986322 2111111 1123666766 4568899998888777776532 223322 133333333
Q ss_pred cCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhc
Q 000124 569 SGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN 647 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLk 647 (2138)
++...++......|..+++..+ ..++..|.+.+.+.+.+....+.++++.++...+. . ...++..|+.+++
T Consensus 344 ~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~------a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 344 SDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--V------APDCANLLLQIVD 415 (746)
T ss_pred CCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--H------HHHHHHHHHHHhc
Confidence 3344689999999999986654 34678888888888888999999999998743221 1 2236888999997
Q ss_pred CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcC
Q 000124 648 SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2138)
Q Consensus 648 s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL---~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G 724 (2138)
.+.+ ....++.++.+|....|+. ..+..|+..+ .-.++..|....|.|+..+...+. ...
T Consensus 416 ~~~~-~v~e~i~vik~IlrkyP~~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---------a~~ 478 (746)
T PTZ00429 416 RRPE-LLPQVVTAAKDIVRKYPEL-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---------GKD 478 (746)
T ss_pred CCch-hHHHHHHHHHHHHHHCccH-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---------HHH
Confidence 6544 4445788899997754432 1344555433 225677888889999998752211 112
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-h-CCCHHHHHHHHHHH
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-A-EGTSEGKKNASRAL 789 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~-~~~~~Vr~~Aa~AL 789 (2138)
.+..+++-....+..||.+.+.+..-+.. .|...+ ..+..+...+ . +.++++|..|..-.
T Consensus 479 ~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~-----~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 479 IIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME-----PQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 33334443445778999988888887754 443211 1233455333 3 46889999986443
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-09 Score=101.70 Aligned_cols=98 Identities=24% Similarity=0.454 Sum_probs=82.3
Q ss_pred EEEEEeccccccc--ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cccc
Q 000124 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KSTL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~~ 2088 (2138)
|.|.|++|.++.. .-+..||||++.+......+|+++.++.||.|||.|.|.+... ..+.++|+|++++.++ .+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 5799999999943 3367899999999432556799999999999999999999875 7899999999998886 8899
Q ss_pred ceEEEEeccee-ecceecceeec
Q 000124 2089 GKVTIQIDKVV-TEGVYSGLFNL 2110 (2138)
Q Consensus 2089 g~~~~~~~~v~-~~~~~~~~~~l 2110 (2138)
|++.+++.++. .++....+|+|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 56666555543
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-08 Score=100.50 Aligned_cols=118 Identities=27% Similarity=0.322 Sum_probs=105.9
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 674 ~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
.+++.|+++.++++++++++.++..++++|++++...+ ..+..+.+.|+++.|++++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999997432 566677888999999999999999999999999999998
Q ss_pred Cc-hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 754 DP-DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 754 ~~-e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
++ ..+..+.+.|+++.|++++.+++..+++.++++|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 66 456678889999999999999999999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=101.24 Aligned_cols=117 Identities=32% Similarity=0.394 Sum_probs=109.3
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
+.+.|+++.+++++.+++..++..++.+|++++...++.+..+.+.|+++.++++|.++++.++..++++|++|+.+...
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55789999999999999999999999999999997788888888999999999999999999999999999999998777
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHH
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
.+..+.+.|.++.|++++.+.+.++++.++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888888999999999999999999999999999986
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-05 Score=96.33 Aligned_cols=605 Identities=13% Similarity=0.110 Sum_probs=315.2
Q ss_pred cCcHHHHHHHHhc----C-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCC
Q 000124 83 AQAMPLFISILRS----G-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157 (2138)
Q Consensus 83 aGgVp~LV~LLks----~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~ 157 (2138)
+-|||.|+.+|++ . +.+.|.-+.++...++.-......-...+.+..+-+.|.+++..+|..++.+|..|+...
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa- 584 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA- 584 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc-
Confidence 4467777777754 2 445555566665554321110000011122334445556678889999999999988642
Q ss_pred CCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHH
Q 000124 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237 (2138)
Q Consensus 158 nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~ 237 (2138)
.+-+.+.|-. ++..||+=...+. ++. ...-+.+++.||..-+..-......-.+-.+..=..+++++.+...+
T Consensus 585 --~Pygie~fDs--VlkpLwkgir~hr--gk~-laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 585 --TPYGIEQFDS--VLKPLWKGIRQHR--GKE-LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred --CCcchHHHHH--HHHHHHHHHHHcc--ChH-HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHH
Confidence 2233444433 6677777666544 222 33556677777766554333333222345555666678889999999
Q ss_pred HHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH-----HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA-----DALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 238 ~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa-----~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
..+.+.|.. ...-........++.+...+-. ++.|. ..+...+. +..+.+--...+..++.-+.+
T Consensus 658 KVv~qcc~t-~Gv~~~y~r~dilp~ff~~fw~------rrmA~drr~ykqlv~ttv---~ia~KvG~~~~v~R~v~~lkd 727 (1172)
T KOG0213|consen 658 KVVKQCCAT-DGVEPAYIRFDILPEFFFSFWG------RRMALDRRNYKQLVDTTV---EIAAKVGSDPIVSRVVLDLKD 727 (1172)
T ss_pred HHHHHHhcc-cCCCHHHHhhhhhHHHHhhhhh------hhhhccccchhhHHHHHH---HHHHHhCchHHHHHHhhhhcc
Confidence 999988832 2222444555667777665531 11111 00111111 011111111222333333333
Q ss_pred CchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000124 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2138)
Q Consensus 313 ~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s-s~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~I 391 (2138)
.++. .+.-+.+...++.+.+.. .+. .+.....+..++|+...
T Consensus 728 e~e~---------yrkm~~etv~ri~~~lg~-----------~diderleE~lidgil~Afqe----------------- 770 (1172)
T KOG0213|consen 728 EPEQ---------YRKMVAETVSRIVGRLGA-----------ADIDERLEERLIDGILYAFQE----------------- 770 (1172)
T ss_pred ccHH---------HHHHHHHHHHHHHhcccc-----------ccccHHHHHHHHHHHHHHHHh-----------------
Confidence 3321 223334444444321111 000 11112223333333321
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh------hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc--
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH------AEAKKVLIGLITMATADVREYLILSLTKLCRRE-- 463 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e------~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s-- 463 (2138)
....+.+-... ++ .+.+.+.. ...+..++..|.+.++.++++|+..+..++.--
T Consensus 771 ---------qtt~d~vml~g---fg------~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt 832 (1172)
T KOG0213|consen 771 ---------QTTEDSVMLLG---FG------TVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT 832 (1172)
T ss_pred ---------cccchhhhhhh---HH------HHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 11111110000 01 11111111 012344566788899999999998888776421
Q ss_pred chhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH
Q 000124 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 464 ~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL 543 (2138)
..--..+...|. .|...+....+++.-..+.+++.+.....-.+...--.+.+|.|.-+|++...++++++...++.+
T Consensus 833 c~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 833 CGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred ccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 111112222222 466777788888887777777777653333333333468899999999999999999999999999
Q ss_pred hcCChh---HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 544 CCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 544 s~~sd~---~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+....+ .|+.+. .---|+++|++++.++++.+..+++.++..-- .+++..|+.=|+..+...+.-..-+++..
T Consensus 911 adrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIV 987 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV 987 (1172)
T ss_pred HhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhh
Confidence 875443 333322 12237788999999999999999999985421 22333333333332222111111112211
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+. ...--..+++|..=-+.++..+|.....+|+.++..-.+....- -..+.|-|-..|.|.+..-|.-|
T Consensus 988 aE----------~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY-iyav~PlleDAlmDrD~vhRqta 1056 (1172)
T KOG0213|consen 988 AE----------TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY-IYAVTPLLEDALMDRDLVHRQTA 1056 (1172)
T ss_pred hh----------hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH-HHHhhHHHHHhhccccHHHHHHH
Confidence 10 00011235666655566788899988888888876321111110 01233445556677788888899
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-------cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-------TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR 772 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-------s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~ 772 (2138)
+.++.+++-+.+. .|....++.||+ ..++.+...-..++-.+. ..+.-...+....+
T Consensus 1057 ~~~I~Hl~Lg~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r------~~Lg~~~~~~Y~~Q 1120 (1172)
T KOG0213|consen 1057 MNVIKHLALGVPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR------VALGPQAMLKYCLQ 1120 (1172)
T ss_pred HHHHHHHhcCCCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH------HHhchHHHHHHHHH
Confidence 9999999874222 344555555544 356777775555544332 11212223444555
Q ss_pred HHhCCCHHHHHHHHHHHHHh
Q 000124 773 VLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 773 LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
-|++....||+.-..+.-++
T Consensus 1121 GLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1121 GLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred hccCcHHHHHHHHHHHHHhH
Confidence 56666667776554444333
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00085 Score=83.98 Aligned_cols=364 Identities=12% Similarity=0.094 Sum_probs=204.4
Q ss_pred chHHHHHHHHccCC-------HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc
Q 000124 432 EAKKVLIGLITMAT-------ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2138)
Q Consensus 432 ~gI~~LV~LL~sss-------~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~ 504 (2138)
+.++.|++|+...+ ...-..|..+|.-++... ...|.+. .+.-+-+-+++++..-|+.|+.+++..-..
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 56777888886532 335566666666555431 1122211 333344456788888999999999988764
Q ss_pred CchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc---cCChhHHHHHHHH
Q 000124 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---SGGPKGQDASAMA 581 (2138)
Q Consensus 505 s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk---S~~~evq~~Aa~A 581 (2138)
..+....-+-..++|.+...+.+..--++..++|+++.++. .....+...|.++..+..+- .+.|...-++.|.
T Consensus 397 p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 397 PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 33333333345678888888877777789999999999975 33344444566666553222 2457778889999
Q ss_pred HHHHHHhhc--------------hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh
Q 000124 582 LTKLIRAAD--------------SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2138)
Q Consensus 582 L~nLs~~~e--------------~~aI~~Li~LL~--~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L 645 (2138)
..|+..+-. ..++..|++-.. .++.+.+.....+|+.|....++ .+ .+.+..+
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d--~V---------~~~~a~~ 542 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD--AV---------SDILAGF 542 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch--hH---------HHHHHHH
Confidence 999986611 012222222211 22233344444444443221111 10 1111111
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCC
Q 000124 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2138)
Q Consensus 646 Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~ 725 (2138)
..- ...-.+.+..++.++-.. +.+ + ..++++.+-...|..+.+..+. ..+. .....
T Consensus 543 ~~~-~~~kl~~~isv~~q~l~~--eD~--------------~---~~~elqSN~~~vl~aiir~~~~--~ie~--v~D~l 598 (858)
T COG5215 543 YDY-TSKKLDECISVLGQILAT--EDQ--------------L---LVEELQSNYIGVLEAIIRTRRR--DIED--VEDQL 598 (858)
T ss_pred HHH-HHHHHHHHHHHhhhhhhh--HHH--------------H---HHHHHHHHHHHHHHHHHHhcCC--Cccc--HHHHH
Confidence 100 000011122222222110 000 0 0234555555566665552222 1111 11124
Q ss_pred hhhHHhhhhcCC-HHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhh
Q 000124 726 VKPLIKLAKTSS-IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKG 804 (2138)
Q Consensus 726 V~~Lv~LL~s~s-~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~ 804 (2138)
+..++.+|.+.+ .-+......++.+|+.+=+-+=+--.+..+|.+.+-|+..+..+...|+..++.|+..- +.++.
T Consensus 599 m~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl--~~df~- 675 (858)
T COG5215 599 MELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL--GTDFN- 675 (858)
T ss_pred HHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh--hhhHH-
Confidence 555677777753 44455677788888765444444445678899999888888999999999999998742 22222
Q ss_pred hhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 805 NAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 805 ~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+-+.-....|++.+++...+...+-..+...+.++.
T Consensus 676 -~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 676 -IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred -HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHH
Confidence 223556788999999887788888888888887774
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=112.64 Aligned_cols=262 Identities=17% Similarity=0.173 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hcHHHHH-HHhhhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAK-AKKEARL-LIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~-~~d~ak~-lI~~~aGgVp~LV~LLks~-~~evr~~Aa~~L~~Ls 112 (2138)
+.-+++.++++.|+..+ ++..+.+++..|+.+.. .+++.-. .-. .-.||.|+.+|+.+ +.+++..||++|..||
T Consensus 164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv--~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPV--KSLVPVLVALLSHEHNFDIMLLACRALTYLC 240 (1051)
T ss_pred cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34468888998887654 55556777777776543 2322222 222 24799999999975 7999999999999998
Q ss_pred cC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhH
Q 000124 113 KD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVV 190 (2138)
Q Consensus 113 ~~-e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V 190 (2138)
.. +.+...+++.++||.|+.=|-. +=.++-++++.+|..|++. + -+.+.++|++...+..++--+ -.+
T Consensus 241 evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~----H---~~AiL~AG~l~a~LsylDFFS---i~a 310 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR----H---PKAILQAGALSAVLSYLDFFS---IHA 310 (1051)
T ss_pred hhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh----c---cHHHHhcccHHHHHHHHHHHH---HHH
Confidence 54 7888889999999999955544 7788999999999999972 2 358899999999998887544 347
Q ss_pred HHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh---cCCCcchhhccchHHHHHHH
Q 000124 191 QGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA---FGDSIPTVIDSGAVKALVQL 266 (2138)
Q Consensus 191 ~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~---~~e~r~~l~~~GaL~~LL~L 266 (2138)
+..|+.+-.|+|..- ..-...+.+ .+|.|..+|...+..+.+.++-++.+++.. .++.-+.+...|.+....++
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qL 388 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQL 388 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHH
Confidence 889999999999873 222244544 799999999999999999999999999853 33444556678888888888
Q ss_pred hccC---CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 267 VGQN---NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 267 L~s~---sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
+.-. -+..+.......+..+++.++..+..+++.+....|..++..
T Consensus 389 lsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 389 LSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 8521 123445556677778888888889888888888888887754
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.8e-05 Score=93.92 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=179.7
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCC--hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHS--EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~s--d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
.+...++.|++.++++|.+|+..++.++.-- ..-.+.+...|. .|.+-+....|++.-....++..+.+..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 3455677899999999999999999886411 111122222332 3557778888999888888887776652
Q ss_pred ---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 590 ---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 590 ---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
-.+.+|.|...|+...+.|++.....++.++...+.--..++.++ .--.|+.+|++.+.++|.+|...+..|+.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 357889999999999999999988888887754433222222211 12347888888999999999999998876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHH
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ 746 (2138)
. +--++++..|+.=|+...-..|....-|++-.+..... ..+++.|++=-..+...||+-.+.
T Consensus 955 a-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 955 A-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred h-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHH
Confidence 2 11223444444444444444455445555544431111 125667776667788999999999
Q ss_pred HHHHhhCCch--HHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhh
Q 000124 747 ALANLLSDPD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSL 819 (2138)
Q Consensus 747 ALaNLa~~~e--~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL 819 (2138)
+|+.+...-. .+..+-. ..|.|...|.+.+.--|+.|+.++.+|+-+.+ ...|..+.-+|++++
T Consensus 1018 alsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~-------g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP-------GTGCEDALIHLLNLI 1083 (1172)
T ss_pred HHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC-------CcCcHHHHHHHHHHh
Confidence 9999975322 2233332 66777888889999999999999999988642 122334455555555
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0011 Score=86.04 Aligned_cols=499 Identities=15% Similarity=0.119 Sum_probs=288.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHHHH
Q 000124 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKA 296 (2138)
Q Consensus 218 I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2138)
++.|.. .-++++.++..|-.-|-+++..+- .+++..|.+.|.+. +....|..|-..|.|-....+..++.
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444444 445567888888777777763221 23566666667533 45567777777777754432333332
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000124 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2138)
Q Consensus 297 i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~ 376 (2138)
-+. +.=+. + + .+ .-+.++.++..+|... .++.....+..++.++...
T Consensus 75 ~~~----qRWl~-l--~-~e-----~reqVK~~il~tL~~~----------------ep~~~s~Aaq~va~IA~~E---- 121 (859)
T KOG1241|consen 75 QYQ----QRWLQ-L--P-AE-----IREQVKNNILRTLGSP----------------EPRRPSSAAQCVAAIACIE---- 121 (859)
T ss_pred HHH----HHHHc-C--C-HH-----HHHHHHHHHHHHcCCC----------------CCCccchHHHHHHHHHHhh----
Confidence 220 11110 0 0 00 0011333333332110 1222223344455554332
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHc--cCCHHHHHHHH
Q 000124 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLI 453 (2138)
Q Consensus 377 q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~--sss~evq~~Aa 453 (2138)
-|..... +....|+..........+|+.++.++|-+|.+-+-....... +.+..++.-.+ .++..+|..|.
T Consensus 122 -lP~n~wp-----~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~ 195 (859)
T KOG1241|consen 122 -LPQNQWP-----ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAAL 195 (859)
T ss_pred -CchhhCH-----HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHH
Confidence 1211111 333555555555444458999999999998775433222222 33444444333 35678888888
Q ss_pred HHHHHhhh------ccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 454 LSLTKLCR------REVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 454 ~aL~~Ls~------~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
.+|.+--. +++..+..| ++...+.-.+++.+++..|..+|..+..-..+....-+....++.-+..+++
T Consensus 196 ~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks 270 (859)
T KOG1241|consen 196 NALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS 270 (859)
T ss_pred HHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88875322 111222222 3445556678899999999999999987544444443444455556667888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC---
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATINQLLALLLG--- 603 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~--- 603 (2138)
.++++.-++.+.=++++. +++.-.+.-.+.+ ..+. |...+.+..++. ..+|.|+++|..
T Consensus 271 ~~deValQaiEFWstice--EEiD~~~e~~e~~-------d~~~~p~~~~fa~~a~~--------~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 271 DNDEVALQAIEFWSTICE--EEIDLAIEYGEAV-------DQGLPPSSKYFARQALQ--------DVVPVLLELLTKQDE 333 (859)
T ss_pred CcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-------hcCCCchhhHHHHHHHh--------HhhHHHHHHHHhCCC
Confidence 999999999998888875 3332222111111 1111 233445555543 456888888863
Q ss_pred ----CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 604 ----DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 604 ----~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
++.+....+.-||..++....+ +.+. -.++.+-+-++++++.-|+.|+-++..+..+....+..-.-.+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~------~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGD-DIVP------HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcc-cchh------hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 1223455566677766544322 1222 1344444466788999999999999999987777777777788
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-----
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD----- 754 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~----- 754 (2138)
+++.++.++.|.+-.++..++|++++++...++ ..-........++.|+.-|++ .+.+..++++++.+|+..
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e--~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE--AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchh--hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986554 222223334455566666654 578889999999999731
Q ss_pred chH-HHHHHhcCcHHHHHH-HH---h--CC-CHHHHHHHHHHHHHhhhcCC
Q 000124 755 PDI-AAEVLLEDVVSALTR-VL---A--EG-TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 755 ~e~-r~~Ii~~g~L~~LV~-LL---~--~~-~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+ ...... ...+.++. ++ . ++ ....|..|-.+|..|..+.+
T Consensus 484 ~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 484 VSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred cCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 111 001111 23333443 22 2 22 34689999999999998765
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00044 Score=90.20 Aligned_cols=617 Identities=13% Similarity=0.106 Sum_probs=330.3
Q ss_pred CcHHHHHHhhCCCC-------CCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC----------C---H
Q 000124 171 GVVPTLWDQLNPKN-------KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD----------N---A 230 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s-------~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~----------s---~ 230 (2138)
-|-|.|++.+.-.. ++...+...|...-..-|.++.-+.+.++..||++.|...++.- + .
T Consensus 1375 AGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav 1454 (2235)
T KOG1789|consen 1375 AGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAV 1454 (2235)
T ss_pred CcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchh
Confidence 47788887664221 12213444555555555555556678899999999999887651 1 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhc-cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHh
Q 000124 231 AAQSNAASLLARLMLAFGDSIPTVID-SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGA 309 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~~l~~-~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~L 309 (2138)
.+..+.++++...+ ..+++++.+.+ ...+.-++++++-++-+.+...+..++..++.+ ...+..+.++|.+=.|+-.
T Consensus 1455 ~vc~~v~~c~SVaa-QFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~ 1532 (2235)
T KOG1789|consen 1455 RVCIHVCDCFSVAA-QFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPH 1532 (2235)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHH
Confidence 34556666666555 33444555554 357778888887555566777788888888885 7888888999999999888
Q ss_pred hcCCc-----------hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH--H-----
Q 000124 310 IVAPS-----------KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY--A----- 371 (2138)
Q Consensus 310 L~s~s-----------~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~--~----- 371 (2138)
+..-+ .+..+....+.+...+..||+++.|-.... +.+.....+.+.+.++.+ .
T Consensus 1533 Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE--------~~TP~N~T~~~sL~alLTPyiAr~Lk 1604 (2235)
T KOG1789|consen 1533 LFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADE--------ENTPDNDTVQASLRALLTPYIARCLK 1604 (2235)
T ss_pred HhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccc--------ccCCCChhHHHHHHHhccHHHHHHHH
Confidence 85422 111122223334455667777766522110 011112223333333321 0
Q ss_pred ----HHHhhc--CCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHH-H---HhhcC----chhHHH----------
Q 000124 372 ----LMVFEQ--KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-A---SLYGN----IFLSQW---------- 427 (2138)
Q Consensus 372 ----l~~l~q--~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL-~---~L~~n----~~~~~~---------- 427 (2138)
.+.++. .+-.....+=+.+.-.-|..+++. ++++++- + ..++. +...+.
T Consensus 1605 ~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~-------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1605 LETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVER-------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHH-------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 000000 000000111111111111111111 1111100 0 00000 000000
Q ss_pred --------Hhhhch-HHHHHHHHcc----------------------------------CCHHHHHHHHHHHHHhhhccc
Q 000124 428 --------VSHAEA-KKVLIGLITM----------------------------------ATADVREYLILSLTKLCRREV 464 (2138)
Q Consensus 428 --------L~e~~g-I~~LV~LL~s----------------------------------ss~evq~~Aa~aL~~Ls~~s~ 464 (2138)
+.+... -..|++.+.+ ..++-.+-+..+|.|+...++
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nP 1757 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANP 1757 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCc
Confidence 000000 0112221111 012233456688999888777
Q ss_pred hhhHHhhh----chhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHH
Q 000124 465 GIWEAIGK----REGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2138)
Q Consensus 465 ~~~~~I~e----~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~a 539 (2138)
+....... -|..+.++.++.+ ++++++.-|+..+..++. +.+.-..+...|.+..|+.+|.+ -|..|+.+..+
T Consensus 1758 dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1758 DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence 65543322 2455677777764 567899999999888776 56666677788888888888866 56778899999
Q ss_pred HHHHhcCChhHHHHHHHcCCcchhhhc-cccCChhHHHHHHHHHHHHHHhhchh--hH--------HHHHHHhcCCCcch
Q 000124 540 LWILCCHSEDIRACVESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAADSA--TI--------NQLLALLLGDSPSS 608 (2138)
Q Consensus 540 L~nLs~~sd~~r~~I~e~GaI~aLv~L-LkS~~~evq~~Aa~AL~nLs~~~e~~--aI--------~~Li~LL~~~d~~V 608 (2138)
|..|+...+-.++. .+.|++.-+..+ +.+..+..+..++..|+.+..++-.| +- ..++..++++.
T Consensus 1836 LYAL~S~~~i~keA-~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P--- 1911 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEA-LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP--- 1911 (2235)
T ss_pred HHHHhcCcHHHHHH-HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH---
Confidence 99999866555555 457777777654 45667889999999999998764211 11 22333333331
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhc---ccchhhHHHH-hhcC--C----CHHHHHHHHHHHHH----HhhcChhhhhh
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSA---ANKGLRSLVQ-VLNS--S----NEENQEYAASVLAD----LFSMRQDICGS 674 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~---~~GaI~aLV~-LLks--~----s~evre~Aa~ALan----L~s~~~e~r~~ 674 (2138)
+.+.+++-. -...++.+....- -.+.+..++. +.+. + ++++-|..+. ... +..+..-.|.-
T Consensus 1912 -EAaVH~fE~---T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~F 1986 (2235)
T KOG1789|consen 1912 -EAAVHMFES---TSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREF 1986 (2235)
T ss_pred -HHHHHHHhc---cCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHH
Confidence 122222110 0111111110000 0111222221 1110 0 1112221111 000 00000111122
Q ss_pred hhhC------------CCHHHHHHHhccCCHHH--HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 675 LATD------------EIVNPCMRLLTSNTQMV--ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 675 Ive~------------GaV~~Lv~LL~dgs~~V--k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
+.+. +.+..++.++...+++. -.--..|+-.|.+..| ...+.+-.-|.++.++..+...+...
T Consensus 1987 i~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP---~LADqip~LGylPK~~~Am~~~n~s~ 2063 (2235)
T KOG1789|consen 1987 VVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP---NLADQLPSLGYLPKFCTAMCLQNTSA 2063 (2235)
T ss_pred hhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc---chhhhCCCccchHHHHHHHHhcCCcC
Confidence 2222 33445555565544432 1122233444444333 45556667889999998887666566
Q ss_pred HHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 741 AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 741 r~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
-..|+.+|-.|+.+.-....+....++.+++..|...-.-+ --|+++|.++.... .+++.++....|.++-|+.+|+
T Consensus 2064 P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~-GLA~EalkR~~~r~--~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2064 PRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLM-GLAAEALKRLMKRN--TGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHH-HHHHHHHHHHHHHh--HHHHHHHHhccCcHHHHHHHhc
Confidence 67899999999998888888888888888998776553322 28899999988743 3667777777889999999997
Q ss_pred c
Q 000124 821 A 821 (2138)
Q Consensus 821 s 821 (2138)
.
T Consensus 2141 ~ 2141 (2235)
T KOG1789|consen 2141 S 2141 (2235)
T ss_pred c
Confidence 3
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00091 Score=86.62 Aligned_cols=268 Identities=17% Similarity=0.179 Sum_probs=200.7
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhc
Q 000124 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLC 112 (2138)
Q Consensus 35 ~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls 112 (2138)
+....+|..+.+.+.. ++-.++|..|++.|..+++ .+|..++ +.|+++|+..|+.. +++....++.++.++.
T Consensus 18 ~s~aETI~kLcDRves-sTL~eDRR~A~rgLKa~sr---kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVES-STLLEDRRDAVRGLKAFSR---KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred ccHHhHHHHHHHHHhh-ccchhhHHHHHHHHHHHHH---HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4666778888777744 4566889999999988876 4677776 47999999999874 8899999999998886
Q ss_pred cCc-------hhH----------HHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHH-HcCcH
Q 000124 113 KDE-------DLR----------LKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV-TEGVV 173 (2138)
Q Consensus 113 ~~e-------~~r----------~~v~~-~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Iv-eaG~I 173 (2138)
..+ +.+ ..+.. .+-|..++..+...|..||..+.+.|.++-++ +....++.+. -.-+|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~---r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC---RPTELQDALLVSPMGI 168 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc---CCHHHHHHHHHCchhH
Confidence 443 222 12222 37789999999888999999999999999874 3344455554 45699
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCC
Q 000124 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN----AAAQSNAASLLARLMLAFGD 249 (2138)
Q Consensus 174 p~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s----~evq~~A~~aL~nLs~~~~e 249 (2138)
..++.+|.+.. ..++..++-.|..|..++...++.+.=.+..+.|..++.... .-+.+-|+..|.||...+..
T Consensus 169 S~lmdlL~Dsr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 169 SKLMDLLRDSR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred HHHHHHHhhhh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 99999998765 358889999999999998888888877888999999997642 24789999999999999999
Q ss_pred CcchhhccchHHHHHHHhccC--CCHhH----------HHHHHHHHHHHhhc-C-----HHHHHHHHhcCCHHHHHHhhc
Q 000124 250 SIPTVIDSGAVKALVQLVGQN--NDISV----------RASAADALEALSSK-S-----IKAKKAVVAADGVPVLIGAIV 311 (2138)
Q Consensus 250 ~r~~l~~~GaL~~LL~LL~s~--sd~~v----------r~~Aa~aL~nLs~~-s-----~e~Rk~i~e~ggL~~LI~LL~ 311 (2138)
++..+.+.+.++.|.++|... .+.++ -..+..+++.+..- | ..+.+.+...++++.|+.++.
T Consensus 246 NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 246 NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 999999999999999887521 11111 12233333333211 1 244456777899999999887
Q ss_pred CCc
Q 000124 312 APS 314 (2138)
Q Consensus 312 s~s 314 (2138)
++.
T Consensus 326 ~~~ 328 (970)
T KOG0946|consen 326 HPG 328 (970)
T ss_pred CCC
Confidence 763
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=103.30 Aligned_cols=360 Identities=16% Similarity=0.081 Sum_probs=234.7
Q ss_pred HHhcCChhHHHHHHHcCCcchhhhccccCCh--hHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000124 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLG 617 (2138)
Q Consensus 542 nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~--evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~ 617 (2138)
.++.+.+.....+.+.+....+..+....+. -.-......+.|++.-.. .+.-+.+.++..+..+++.......-+
T Consensus 376 y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n~~ 455 (748)
T KOG4151|consen 376 YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLNWG 455 (748)
T ss_pred hhccccchhhhhccccchHHHHHhhhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccccc
Confidence 5555555555566666777777777666543 222335666777765422 245566777776655554332111111
Q ss_pred HHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000124 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2138)
Q Consensus 618 ~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~ 697 (2138)
+. +.-..+ .....|..+......++.+....+..+ + .....+...++.|+...|+++...+++..+.
T Consensus 456 ~v-----~~~r~r-k~~~~~~~~~~~svakt~~~~~~E~~a------A-~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl 522 (748)
T KOG4151|consen 456 NV-----HMSRAR-KRLSLDEDPSCESVAKTVSWAKNEYLA------A-KEKYERAKKIKPGGYEALLRLGQQQFEEAKL 522 (748)
T ss_pred hH-----HHHHHH-HhhccCcchhhhHHHHHHHHHHHHHHh------h-hhHHhcCccccccHHHHHHHHHHHhchHHHH
Confidence 11 000011 123344455555554443333333333 2 2566678889999999999999999999999
Q ss_pred HHHHHHH-HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHH-HHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH
Q 000124 698 QSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE-TAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2138)
Q Consensus 698 ~AA~ALa-nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~-eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL 774 (2138)
.+..+|. .+.. + ..+ ...+++++.+.++........ +++.+|.||++ +...|.++.++.+++.+..++
T Consensus 523 ~~~~aL~~~i~f--~---~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~ 593 (748)
T KOG4151|consen 523 KWYHALAGKIDF--P---GER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM 593 (748)
T ss_pred HHHHHHhhhcCC--C---CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh
Confidence 9999998 3332 2 333 245788888888776544444 79999999998 556688899999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcc
Q 000124 775 AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPW 853 (2138)
Q Consensus 775 ~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~ 853 (2138)
.++++..|+.+.+.+.||.... ..+...+.....-.++++.+... ..+....+...+++.++. ..+.|..+.
T Consensus 594 ~ee~~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~--- 666 (748)
T KOG4151|consen 594 TEENPALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRIL--- 666 (748)
T ss_pred hcccHHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHH---
Confidence 9999999999999999999864 33444444433334566655433 455567777777776665 334454332
Q ss_pred cccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHh
Q 000124 854 AALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICA 933 (2138)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a 933 (2138)
+...|.+.++....++.+.+||+++.+..|+...- ..++..++.++.+++..+-.+.=-..
T Consensus 667 ----~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~---------------~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 667 ----ELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL---------------FEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ----HhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH---------------HHHHHHhccchHHHHHHHHHHhhhhh
Confidence 34568999999999999999999999999966543 57888899998888888777663333
Q ss_pred cccchhhHHHHHhhcC
Q 000124 934 AKEHKKQSMDALDLSG 949 (2138)
Q Consensus 934 ~k~~~~~~~~~L~~~g 949 (2138)
.|.-+++.+..-..-|
T Consensus 728 ~~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 728 KREDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhhHHHHHHHhh
Confidence 4444555444443333
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=115.42 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=94.8
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCCC--CccccccccCCCCCccccceeeecCC-CCCCeEEEEEeecC
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP--PRQTKVVSHSISPEWKEGFTWAFDVP-PKGQKLHIICKSKN 2081 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~p~w~~~f~~~~~~~-p~~~~l~~~~~~~~ 2081 (2138)
+-...|+|+|++|.|| .++-|.+||||++.+-.-. ++||||.++++||.|||+|.|-+..- =.+..|++.||+-|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3457899999999999 5543568999999984332 33699999999999999999984222 24789999999999
Q ss_pred CC-CCcccceEEEEecceeecceecceeecCCCCCCCCCc-cceEEEEEecC
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS-RTLEIEIIWSN 2131 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~w~~ 2131 (2138)
.| +.+-+|.|.|.|+.|=..+....++.|...+-...+. +.+.+-|..-|
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeec
Confidence 99 7788999999999998888777788888862111111 35555555444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.8e-06 Score=104.46 Aligned_cols=244 Identities=17% Similarity=0.076 Sum_probs=180.8
Q ss_pred chhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 473 REGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 473 ~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+++.++..+. ..+..++..++.++..... ..++..|++.|.+.++.++..++.+|+.+..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 346788888884 5566666655555422111 1137889999999999999999999987754
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++.+.|+.++++.++.++..+..+++... ....+.++.+|++.++.++..+.++|+.+-
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------- 175 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR----HDPGPALEAALTHEDALVRAAALRALGELP----------- 175 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc----cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----------
Confidence 456778889999999999998887777642 235678999999999999999999998752
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~ 711 (2138)
....++.|...+.+.++.+|..|+.++..+.. .+++.++..+...........++..++....
T Consensus 176 ---~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~--- 238 (410)
T TIGR02270 176 ---RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG--- 238 (410)
T ss_pred ---cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHhccCccHHHHHHHHHHhCCc---
Confidence 23467788888999999999999999988754 3455677775555444444444444443311
Q ss_pred cccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 712 TKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 712 ~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..++..|..+++++. ++..++.+|+.+. ....++.|+..+.+.. +++.|.+++.+
T Consensus 239 -----------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ 293 (410)
T TIGR02270 239 -----------PDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSL 293 (410)
T ss_pred -----------hhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHH
Confidence 137888999998754 8999999999554 5678999999886543 99999999999
Q ss_pred hhhc
Q 000124 792 LLKH 795 (2138)
Q Consensus 792 L~~~ 795 (2138)
++.-
T Consensus 294 ItG~ 297 (410)
T TIGR02270 294 ITGM 297 (410)
T ss_pred hhCC
Confidence 9874
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-05 Score=96.88 Aligned_cols=249 Identities=16% Similarity=0.123 Sum_probs=191.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hhhccchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~-Ls~~s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
|..+-..+++..|.+++.-|+. +...+.+.-..+.-.-.+|.|+.+|+. .+.+++..|+++|.+|+..-+.....+++
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 3334444578888888766654 455555555555556678999999975 47899999999999999988888889999
Q ss_pred cCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c-
Q 000124 515 AGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D- 590 (2138)
Q Consensus 515 aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e- 590 (2138)
.++||.|++-|. -...++-+++..+|-.++.. . ...+.+.|++.+.+..+.--+-.+|+.|..+-.|+|..- +
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H-~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--H-PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--c-cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999997665 45789999999999999863 2 334567999999888877777789999999999999762 1
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHH
Q 000124 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVL 661 (2138)
Q Consensus 591 ----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~-~~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~AL 661 (2138)
.+++|.|..+|...+...-+.++-|+..++.. ...++..+. +...|.+.-..+|+.-. +..+....++.|
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-HhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 46889999999998888888888888888754 344444443 56778888888877543 445666777888
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhc
Q 000124 662 ADLFSMRQDICGSLATDEIVNPCMRLLT 689 (2138)
Q Consensus 662 anL~s~~~e~r~~Ive~GaV~~Lv~LL~ 689 (2138)
..++++.+-......+.++...|..+|.
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 8888877888888888888877777764
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=100.26 Aligned_cols=244 Identities=19% Similarity=0.117 Sum_probs=179.9
Q ss_pred CCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 558 GAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 558 GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
.+++.++..+ .++++++...++.+|... .+..++..|++.|.+.++.++..+.++|+.+ ...
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------------~~~ 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---EDALDLRSVLAVLQAGPEGLCAGIQAALGWL--------------GGR 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---CChHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------------Cch
Confidence 4677777777 456677777666555322 2334589999999999998999998888753 234
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+....|+.++++.++.+|..++.++.... ....+++..+|++.++.++..|+++|+.+.. .
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--~----- 177 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR--R----- 177 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--c-----
Confidence 46788999999999999998887766622 2345789999999999999999999999864 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..++.|...+.+.++.|+..|+.+|..+.. ..++..+..+........+..++.++.....
T Consensus 178 -------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-- 238 (410)
T TIGR02270 178 -------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-- 238 (410)
T ss_pred -------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHhCCc--
Confidence 266778888999999999999999976642 3355666764444444444444445543321
Q ss_pred CCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChH
Q 000124 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPP 876 (2138)
Q Consensus 797 ~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~ 876 (2138)
...+..|..++++. .++..++.+|+.+. .+..++.|+..+.+..
T Consensus 239 ------------~~a~~~L~~ll~d~----~vr~~a~~AlG~lg------------------~p~av~~L~~~l~d~~-- 282 (410)
T TIGR02270 239 ------------PDAQAWLRELLQAA----ATRREALRAVGLVG------------------DVEAAPWCLEAMREPP-- 282 (410)
T ss_pred ------------hhHHHHHHHHhcCh----hhHHHHHHHHHHcC------------------CcchHHHHHHHhcCcH--
Confidence 24678888888643 26899999999877 4557888888887654
Q ss_pred HHHHHHHHHHHhhccC
Q 000124 877 LQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 877 vq~~AieiL~~L~~~~ 892 (2138)
+++.|.+++.++.+-.
T Consensus 283 ~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 283 WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998754
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.6e-07 Score=95.75 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=74.8
Q ss_pred EEEEEeccccc--ccc--cCC--CCceEEEEecCC-CCc-cccccccCCC--CCccccceeeecCCCCC-----------
Q 000124 2012 LTVTIKRGNNL--KQT--MGT--TNAFCRLTIGNG-PPR-QTKVVSHSIS--PEWKEGFTWAFDVPPKG----------- 2070 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~--~~~--~~~~~~~~~~~~-~~~-~t~~~~~~~~--p~w~~~f~~~~~~~p~~----------- 2070 (2138)
|.|+|-++.|+ ... .|. .||||+..+... +.| +|.|-.+++| |.||+.|-|.|+.||..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999995 332 454 999999999432 344 4999999999 99999999999998865
Q ss_pred -----------CeEEEEEeecCCC-CCcccceEEEEecceeec
Q 000124 2071 -----------QKLHIICKSKNTF-GKSTLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2071 -----------~~l~~~~~~~~~~-~k~~~g~~~~~~~~v~~~ 2101 (2138)
-+|+|.||++|.| ..+.+|.+.++|......
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 5689999999998 578999999999876543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00026 Score=92.00 Aligned_cols=432 Identities=15% Similarity=0.133 Sum_probs=269.8
Q ss_pred HHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhH
Q 000124 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2138)
Q Consensus 397 ~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggI 476 (2138)
.=|++++.. +.--|+.++++++..+-.+ +..+-+.+++...++.+++.|+.+..++-...++....+ +
T Consensus 114 nDL~s~nq~-vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~ 181 (866)
T KOG1062|consen 114 NDLNSSNQY-VVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----V 181 (866)
T ss_pred hhccCCCee-ehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----h
Confidence 334444443 4456666777765443222 223446678888999999999999999888877665544 5
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh---------------CCHHHHHHHHHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLW 541 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks---------------~d~~vre~Aa~aL~ 541 (2138)
+....+|.+.+..+...++..+..++..+++.-....+ .++.|+..|+. .+|-++......|+
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 66777888888888888888888888765554333333 66677777652 26788999999999
Q ss_pred HHhcCChhHHHHHHHcCCcchhhhccc------cCChhHHHHHHHHHHHHHHhh--chhhHHHHHHHhcCCCcchHHHHH
Q 000124 542 ILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAA--DSATINQLLALLLGDSPSSKAHVI 613 (2138)
Q Consensus 542 nLs~~sd~~r~~I~e~GaI~aLv~LLk------S~~~evq~~Aa~AL~nLs~~~--e~~aI~~Li~LL~~~d~~V~~~A~ 613 (2138)
-|+.++.+..+.+.+ .|-+++. .-...+.+.++.++..+-... ..-+++.|-++|...+.+++..+.
T Consensus 260 iLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 260 ILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 998876555444321 1222222 122456777777775553221 134678888888888888888888
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~ 693 (2138)
..|..+....+. .+++ -=.++++.+++.+..+|..|...+..|.. ..+.+. .++.|+.+|...++
T Consensus 335 n~L~r~V~~d~~--avqr------Hr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 335 NMLLRVVQQDPT--AVQR------HRSTILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDE 399 (866)
T ss_pred hhHHhhhcCCcH--HHHH------HHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccH
Confidence 887776543222 2222 13678889999999999999999998886 223322 35678899988899
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--chHHHHHHhcCcHHHHH
Q 000124 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALT 771 (2138)
Q Consensus 694 ~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e~r~~Ii~~g~L~~LV 771 (2138)
+.|...+.-+..++..+.+ ..+. .+..+.+.+.....-|+..+...|..|..+ ++........ ....+.
T Consensus 400 ~~k~~~as~I~~laEkfaP--~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r-Ly~a~~ 470 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAP--DKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR-LYLALS 470 (866)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH-HHHHHh
Confidence 9999999888888864433 4444 456666666665555555555555555331 2221111100 000011
Q ss_pred -H-HHhCCCHHHHHHHHHHHHHhhhc--CCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCc
Q 000124 772 -R-VLAEGTSEGKKNASRALHQLLKH--FPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLN 847 (2138)
Q Consensus 772 -~-LL~~~~~~Vr~~Aa~AL~nL~~~--~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~ 847 (2138)
. ++....+.+.+-|.||++.-+.- .+.++.-........++..|.+++.....+..++..|+-||..|..--..+
T Consensus 471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~- 549 (866)
T KOG1062|consen 471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS- 549 (866)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-
Confidence 1 12233456688999999876621 111111111222356778888888877777788889999888887421111
Q ss_pred ccCCcccccccCCCchHHHH-HhhhcCChHHHHHHHHH
Q 000124 848 FTYPPWAALAEVPSSIEPLV-CCLAEGPPPLQDKAIEI 884 (2138)
Q Consensus 848 ~i~~~~~~~~~~~~~L~~Lv-~ll~~~~~~vq~~Aiei 884 (2138)
.+ -+..|+ ....+.+..+|++|++-
T Consensus 550 -----------~~-ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 550 -----------SE-RIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred -----------HH-HHHHHHHHhcccccHHHHHHHHHH
Confidence 11 133333 34445666799999874
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-07 Score=119.41 Aligned_cols=117 Identities=25% Similarity=0.371 Sum_probs=100.5
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
|-|.|.++.|+|| -+.+|..||||++.+ ||+ -.||||+||++||.|||+|+-.+..- ..|-+.|-|.|-+.. ..
T Consensus 1040 G~l~I~~~~~~nl~~~d~ng~sDpfv~~~l-n~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFL-NEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred CcEEEEEeccCCCcccccCCCCCceEEEEe-cceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccCCCc
Confidence 7899999999999 778888999999999 887 56899999999999999999998866 899999999998776 45
Q ss_pred cccceEEEEecceeecceecceeecCCCC--CCCCCccceEEEEEecCCC
Q 000124 2086 STLGKVTIQIDKVVTEGVYSGLFNLNHDN--NKDSSSRTLEIEIIWSNRI 2133 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~w~~~~ 2133 (2138)
+.+|++.|.|..+-.+|.+|..-.|++-. +.+|. ++..|.-++
T Consensus 1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~-----~~~~~~~r~ 1162 (1227)
T COG5038 1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGT-----LHPGFNFRS 1162 (1227)
T ss_pred cccccccccHhhcCcCCccceeeeccCcceEecccE-----eecceecch
Confidence 78999999999999999999999998874 33333 556665543
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=97.24 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=156.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChH
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIP 128 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~~v~~~G~Ip 128 (2138)
..+.+.++++.|+..|..++..-|++..++. -||.+.++..+++.+..+|..|+.+|+.... ++.+++.+.+.|+.+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4577889999999999999999989988885 4888888889999999999999999988875 578999999999999
Q ss_pred HHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc
Q 000124 129 PLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG 207 (2138)
Q Consensus 129 ~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~ 207 (2138)
.|+..|.++ +..+|..|+.++..+-.+ ...|...|...++...|...+.+++ .+..++..++..+..+...+..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn----~~~g~~~fl~~~G~~~L~~vl~~~~-~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRN----NKPGQDEFLKLNGYQVLRDVLQSNN-TSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhc----CcHHHHHHHhcCCHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHhhhh
Confidence 999999984 777889999999999983 5678899999999999999999876 4566788999999999887765
Q ss_pred hhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 208 YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 208 r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
....+...+-...+..+....+.++++.++.++..+.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 5454444455555566666667788888877776655
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00035 Score=88.49 Aligned_cols=347 Identities=16% Similarity=0.119 Sum_probs=221.8
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhHH-HHHhc-----CChHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 000124 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRL-KVLLG-----GCIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2138)
Q Consensus 84 GgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~~r~-~v~~~-----G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2138)
..+..++.+|+. ..+++..+.+.++..|..+...+. .+.+. +-..+++++|.++|.-+...|+..|..+..++
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 457788888875 578999999999988876654443 34432 45778889998889999999999999998754
Q ss_pred CCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHH
Q 000124 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQS 234 (2138)
Q Consensus 157 ~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~ 234 (2138)
.. ...+. ...-.+.-|.+.+..+.. ...+..++.+|..|...++-| ..+.+.+|++.|..+|+.. +-+.+.
T Consensus 133 ~~-~~~~~---~l~~~~~~l~~~l~~~~~--~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 133 LA-KMEGS---DLDYYFNWLKEQLNNITN--NDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred cc-ccchh---HHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHH
Confidence 32 11111 111133455666654432 235667789999999988777 5666777999999999864 357889
Q ss_pred HHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCH------HHHHHHHhcCCHHHHHH
Q 000124 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLIG 308 (2138)
Q Consensus 235 ~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~------e~Rk~i~e~ggL~~LI~ 308 (2138)
.++-+++-|+...+ ....+...+.++.++.++.......+-+-+..++.|+...+. .....+++. +++.++.
T Consensus 206 ~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~ 283 (429)
T cd00256 206 QSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQ 283 (429)
T ss_pred HHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHH
Confidence 99999999985433 344556678999999999866667888889999999988531 122234433 3444455
Q ss_pred hhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 000124 309 AIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA 388 (2138)
Q Consensus 309 LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~ 388 (2138)
.+....- .++. ..+.|..+. +.|. ..+..+
T Consensus 284 ~L~~rk~------~Ded----L~edl~~L~-----------e~L~---------~~~k~l-------------------- 313 (429)
T cd00256 284 SLEQRKY------DDED----LTDDLKFLT-----------EELK---------NSVQDL-------------------- 313 (429)
T ss_pred HHhcCCC------CcHH----HHHHHHHHH-----------HHHH---------HHHHHc--------------------
Confidence 4433110 0000 111111111 1000 000000
Q ss_pred hhHHHHHHHHcCCC--------ChhHHHHHHHHHHHHhhcCchhHHHHhhhc--hHHHHHHHHc-cCCHHHHHHHHHHHH
Q 000124 389 RQIEDILVMLLKPH--------DNKLVQERVLEAMASLYGNIFLSQWVSHAE--AKKVLIGLIT-MATADVREYLILSLT 457 (2138)
Q Consensus 389 ~~Ie~~LV~LL~s~--------~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~--gI~~LV~LL~-sss~evq~~Aa~aL~ 457 (2138)
...+++...+.... ++.-.++. ...+.+.+ .++.|+.++. +.++.+...|+.-++
T Consensus 314 tsfD~Y~~El~sg~L~WSp~H~se~FW~EN--------------~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 314 SSFDEYKSELRSGRLHWSPVHKSEKFWREN--------------ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred CCHHHHHHHHhcCCccCCCCCCCchHHHHH--------------HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 01112222221111 00002221 12233333 3677888884 567888888899999
Q ss_pred HhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhh
Q 000124 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2138)
Q Consensus 458 ~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~ 503 (2138)
.++...|..+..+.+.|+=..+++++.++|+++|..|+.++..|-.
T Consensus 380 e~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999877778787778888889999999999999999999988754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00014 Score=91.86 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=215.0
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhc-CchhHHHHhh-----hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSH-----AEAKKVLIGLITMATADVREYLILSLTKLCRRE 463 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~-n~~~~~~L~e-----~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s 463 (2138)
.....++.++.....+++...++.-+..+.. ++.....+.+ .+....++.++...+..++..++..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456777777776666677777776776643 3443444443 245677888998888899999999999887653
Q ss_pred chhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHH
Q 000124 464 VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2138)
Q Consensus 464 ~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL 540 (2138)
..........--.+.+...+++. +...+..++.+|..|.. .++.|..+.+.++++.|+.+|+.. +...+-.++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 32211111111234455666544 46678888899999988 588999999999999999999864 457788999999
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhc----h---------hhHHHHHHHhcC---
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----S---------ATINQLLALLLG--- 603 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e----~---------~aI~~Li~LL~~--- 603 (2138)
+-|+.+.+ ........+.|+.|+++++.. ...+.+-+..+|.|+..... . ..++.+++.|..
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998554 444556688999999998764 46788899999999987531 1 023444555543
Q ss_pred CCcchHHHHHHHHHHHHhh----hc-------------------c--hHHHHhh---hccc--chhhHHHHhhcC-CCHH
Q 000124 604 DSPSSKAHVIKVLGHVLTM----AL-------------------Q--EDLVQKG---SAAN--KGLRSLVQVLNS-SNEE 652 (2138)
Q Consensus 604 ~d~~V~~~A~~AL~~La~~----~~-------------------~--~d~v~~~---l~~~--GaI~aLV~LLks-~s~e 652 (2138)
.|+++.... +.|...... .+ + +.+.++- +.+. ..++.|++++.. .++.
T Consensus 291 ~DedL~edl-~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDDL-KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 334332211 111111100 00 1 1122111 1122 247889999954 4677
Q ss_pred HHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 653 NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 653 vre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+..-|+.=++.++...|..+..+.+.|+=..+++++.+.++++|.+|..|+..|..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888998999999999999999999999988753
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0018 Score=85.24 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH---HHHHHhhhcCcHHHHHHHHhcC-------CHHHHHHHHHH
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKE---ARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAAT 107 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~---ak~lI~~~aGgVp~LV~LLks~-------~~evr~~Aa~~ 107 (2138)
...+.+|+..|+.+. | ..|-.++-.+.+++...+. .++.|.+ +=|.+-+-++|+++ ....+.-+..+
T Consensus 4 ~~~l~~c~~lL~~~~-D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD-D-TERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred hHHHHHHHHHhccCC-c-HHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 356889999998865 4 4588889889999887663 3456776 77889999999983 45678889999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSEST-DTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 108 L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~-eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
|..+|.+++....-...+.||.|++++.+.+. ++...|..+|..++. .+.|++.+++.|+++.|.+.+.+++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-----~~~G~~aLl~~g~v~~L~ei~~~~~-- 153 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-----SPEGAKALLESGAVPALCEIIPNQS-- 153 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-----CcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence 99999988776444445889999999988655 999999999999996 5789999999999999999998743
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHHhCc----HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC-cchhhcc----
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGG----VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDS-IPTVIDS---- 257 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG----I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~-r~~l~~~---- 257 (2138)
...+.+..+|.+++......... .+.-+ ++.+...........+-..+..|..+....+.. .......
T Consensus 154 --~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 154 --FQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --chHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 35788999999998865421100 11122 333444444444556677788888777433211 1122222
Q ss_pred chHHHHHHHhccCCCHhHHHHHHHHHHHHh
Q 000124 258 GAVKALVQLVGQNNDISVRASAADALEALS 287 (2138)
Q Consensus 258 GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs 287 (2138)
.....+..++++......|..+......+.
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 233344455554444455555544444443
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.025 Score=74.76 Aligned_cols=335 Identities=15% Similarity=0.191 Sum_probs=200.2
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
+.+..+++......++.-++..+..+..+.++.+.+.+.+.+..|+.++.+ -+..+..+...|..++++ +...+.-.+
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHh
Confidence 555666666656568899999888888888888888888888888888876 566788999999999988 455555567
Q ss_pred chhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchH-HHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 473 REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPP-LVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 473 ~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~-LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
.||+.-+..++ .+.++++|..++..|.++.... ..-|-.|.--..+|. ++..++++ | +.+..++..-+.+
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-P---EAaVH~fE~T~En--- 1924 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-P---EAAVHMFESTSEN--- 1924 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-H---HHHHHHHhccCCC---
Confidence 88877777655 5667888999999999997631 111111111111111 12222221 1 2333332222111
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh----h-----------ch----------hhHHH--HHHHhc
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA----A-----------DS----------ATINQ--LLALLL 602 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~----~-----------e~----------~aI~~--Li~LL~ 602 (2138)
|-|++ ++..+......+..+... . +. -.+.. +-.++.
T Consensus 1925 -----------PELiW-----n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~ 1988 (2235)
T KOG1789|consen 1925 -----------PELIW-----NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVV 1988 (2235)
T ss_pred -----------ccccc-----CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhh
Confidence 11111 111111111111111110 0 00 00000 000111
Q ss_pred CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH--HHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000124 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE--ENQEYAASVLADLFSMRQDICGSLATDEI 680 (2138)
Q Consensus 603 ~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~--evre~Aa~ALanL~s~~~e~r~~Ive~Ga 680 (2138)
+.... ..++..+ -.|.+..+.+++...++ ..-+.-..++..|....|.....+-..|-
T Consensus 1989 ~P~f~---------------LR~Pk~F-----L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1989 GPGFN---------------LRHPKLF-----LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred CCCCc---------------ccCHHHH-----HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence 11000 0011000 12245666666655433 34445556667777778888888888899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHH
Q 000124 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIA 758 (2138)
Q Consensus 681 V~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r 758 (2138)
+|.++..+...+...-..|.+.|..|+. ++ -+...+.....+.++++.++.. .+...-|+++|-.+.. ..+.-
T Consensus 2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lse--n~--~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLV 2123 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSE--NQ--FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELV 2123 (2235)
T ss_pred hHHHHHHHHhcCCcCcHHHHHHHHHHhh--cc--HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999887777777889999999986 33 5666777888888888888754 3344578888888865 34455
Q ss_pred HHHHhcCcHHHHHHHHhCC
Q 000124 759 AEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 759 ~~Ii~~g~L~~LV~LL~~~ 777 (2138)
....+.|.+|.|.++|...
T Consensus 2124 AQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2124 AQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccCcHHHHHHHhccc
Confidence 6677899999999998654
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.012 Score=76.89 Aligned_cols=222 Identities=16% Similarity=0.164 Sum_probs=171.3
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCC----
Q 000124 85 AMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGL---- 157 (2138)
Q Consensus 85 gVp~LV~LLks~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~---- 157 (2138)
-|+.|+.-..+. -.+-|..|++.|..+++ ..|..++ ..|.+++++.|.. .|++....++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 466666666554 46788999999998864 4555554 4667999999987 499999999999999998753
Q ss_pred ---CC--Chhh---HHH-HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc--hhHHHHHhCcHHHHHHhhc
Q 000124 158 ---SD--DHVG---MKI-FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG--YWRATLEAGGVDIIVGLLS 226 (2138)
Q Consensus 158 ---nk--d~~g---re~-IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~--r~~aI~e~GGI~~Lv~lL~ 226 (2138)
++ ++.| .+. +...+-|..|+..+...+ -.|+..++..|.++-++... +...+...-||..++.+|.
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D---F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD---FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc---hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 11 1111 122 345678899999887654 56899999999999777543 2233555779999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC--CC-HhHHHHHHHHHHHHhhcCHHHHHHHHhcCCH
Q 000124 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN--ND-ISVRASAADALEALSSKSIKAKKAVVAADGV 303 (2138)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~--sd-~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL 303 (2138)
...+-+|..++-.|..|..+++..++.+.=..+...|+.++... .+ .-+...+...+.||..+|..+.+.|.+.+-+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98889999999999999988888888887788999999999632 22 2456778888889999888999999999999
Q ss_pred HHHHHhhcC
Q 000124 304 PVLIGAIVA 312 (2138)
Q Consensus 304 ~~LI~LL~s 312 (2138)
+.|.+++..
T Consensus 257 ~rL~klL~~ 265 (970)
T KOG0946|consen 257 PRLLKLLSV 265 (970)
T ss_pred HHHHhhcCc
Confidence 999988754
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00082 Score=84.54 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=176.4
Q ss_pred chHHHHHhhhCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-------
Q 000124 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA------- 588 (2138)
Q Consensus 518 Ip~LV~LLks~d~~vre~Aa~aL~nLs~~--sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~------- 588 (2138)
+...+.+|++..+++|..|+...+.|+.- +..-.+.+...|. .|.+-+....|++.-....++..+.+.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44456678999999999999988888541 0000122222332 245666777888888777777766544
Q ss_pred -hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 589 -ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 589 -~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
+-.+++|.|...|+...+.+.......++.++...+.--..++.++ .--.|+.+|++-+.++|.+|...+..++..
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 2367889999999998888888877777777654433222222211 123477888889999999999999888752
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~A 747 (2138)
+--++++..|+.=|+...-..|...+-|++-.+...- -..++|.|++=-..+...||+-.+.+
T Consensus 761 -------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----------pfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 761 -------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----------PFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred -------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----------chhhHHHHHhcccCchhHHHHhHHHH
Confidence 2223445555555555555555555555555543111 12256666666667889999999999
Q ss_pred HHHhhCCchH--HHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 748 LANLLSDPDI--AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 748 LaNLa~~~e~--r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
++.+...-.. +..+- ...|.|...|.+.++--|+.|..++.+|.-+++.- ....+.-+|++++=
T Consensus 824 m~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNllw 889 (975)
T COG5181 824 MCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHhh
Confidence 9998753222 22232 25677777888999999999999999999875421 11234455666663
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=111.44 Aligned_cols=122 Identities=14% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCceEEEEEeccccccc---------------------ccCCCCceEEEEecCCCCccccccccC-CCCCccccceeeec
Q 000124 2008 LPGCLTVTIKRGNNLKQ---------------------TMGTTNAFCRLTIGNGPPRQTKVVSHS-ISPEWKEGFTWAFD 2065 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~p~w~~~f~~~~~ 2065 (2138)
|=|.|-|||.+|.+|.. + +.++|||-+.+++..--+|+|+++. .||+|||.|.--+.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGK-GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCC-CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 45999999999998742 2 4569999999954333379999885 69999999999888
Q ss_pred CCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCc-cceEEEEEecCC
Q 000124 2066 VPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS-RTLEIEIIWSNR 2132 (2138)
Q Consensus 2066 ~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~w~~~ 2132 (2138)
-+ . ..+++.||+.+.||-+-+|++.|...+++...+++++|.+.+++.|-=+. -++.+.+|..+-
T Consensus 85 h~-~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 85 HM-A-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cC-c-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 76 3 78999999999999999999999999999998999999999995442211 245577777664
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=90.74 Aligned_cols=250 Identities=26% Similarity=0.272 Sum_probs=185.7
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
..++.+.+.+.+.+..+|..+...++.+.. ..+++.+..+|.+.++.+|..++.+|+.+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 457788899999999999999999877765 3478999999999999999999999988864
Q ss_pred HHHcCCcchhhhccc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc------------hHHHHHHHHHHHH
Q 000124 554 VESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS------------SKAHVIKVLGHVL 620 (2138)
Q Consensus 554 I~e~GaI~aLv~LLk-S~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~------------V~~~A~~AL~~La 620 (2138)
..+++.|+.++. +++..++..++++|+.+. +...+.+++..+.++... ++..+..+++.+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~---~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~- 176 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLG---DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL- 176 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC---chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc-
Confidence 457888898888 688999999999999886 445688899999887622 333333333332
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSA 700 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA 700 (2138)
.....+..+..++++.+..+|..|+.+|..+...+ ..+...+...+.+.+..++..++
T Consensus 177 -------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 177 -------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred -------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 33445788888888888888888888888887632 34557778888888888888888
Q ss_pred HHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHH
Q 000124 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSE 780 (2138)
Q Consensus 701 ~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~ 780 (2138)
.+|+.+.. ...+..++..+.+.+..++..+..++..+- .......+...+.+....
T Consensus 235 ~~l~~~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 290 (335)
T COG1413 235 LALGEIGD--------------EEAVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLIDEANA 290 (335)
T ss_pred HHhcccCc--------------chhHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhhcchhh
Confidence 88877753 125677888888877777776666555111 123455566667777778
Q ss_pred HHHHHHHHHHHhhhc
Q 000124 781 GKKNASRALHQLLKH 795 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~ 795 (2138)
++..+...+......
T Consensus 291 ~~~~~~~~l~~~~~~ 305 (335)
T COG1413 291 VRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888877766654
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00019 Score=88.92 Aligned_cols=275 Identities=27% Similarity=0.290 Sum_probs=205.9
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
.....++.++.+.+..++..++..+..+.. ...++.+..++.+.++.+|..++.+|+++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 456778888888888888888877554432 3468899999999999999999999888875
Q ss_pred HHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCC----------h--hHHHHH
Q 000124 512 ITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG----------P--KGQDAS 578 (2138)
Q Consensus 512 I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~----------~--evq~~A 578 (2138)
...++.|+.+|. +.+..+|..++.+|+.+.. ..++..++..+.+.. + .++..+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 247899999999 5899999999999999964 334666777666644 2 467777
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHH
Q 000124 579 AMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2138)
Q Consensus 579 a~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa 658 (2138)
...|+.+. +...++.+..++.+.+..++..+..+|+.+.... ......+...+.+.+..+|..++
T Consensus 170 ~~~l~~~~---~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGELG---DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHcC---ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 77777664 5678899999999999999999998888764221 13467788889999999999999
Q ss_pred HHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCH
Q 000124 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738 (2138)
Q Consensus 659 ~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~ 738 (2138)
.+|..+.. ...+..+...+.+.+..++..+..++...-. ......+...+.+...
T Consensus 235 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~ 289 (335)
T COG1413 235 LALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGALDL--------------AEAALPLLLLLIDEAN 289 (335)
T ss_pred HHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------------hhhHHHHHHHhhcchh
Confidence 99888765 4567889999999999888877766662211 1245677777888888
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 739 DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 739 ~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
.++..+..++.... .......+.....+++..++..+...+
T Consensus 290 ~~~~~~~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 290 AVRLEAALALGQIG----------QEKAVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hHHHHHHHHHHhhc----------ccchHHHHHHHhcCCchhhHHHHHHHH
Confidence 88888888887554 334444555555566666665555444
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-06 Score=106.79 Aligned_cols=117 Identities=16% Similarity=0.318 Sum_probs=87.9
Q ss_pred CceEEEEEecccccc--------cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2009 PGCLTVTIKRGNNLK--------QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--------~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
+..|+|+|+.|+.+. +...-.||||++.+ -|- +++||+|++|.||+|||+|+|.+..|- =..|.+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i-~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYI-VGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEE-eccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEE
Confidence 578999999999872 11112489999999 563 346999999999999999999998873 357999
Q ss_pred EEeecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2076 ICKSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2076 ~~~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|+++|.++ .+.+|...|.++..-.--| ..+|-+..++.=..-.|.++|+|.
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~~a~Llv~f~~~ 599 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLKNVRLLMRFIFV 599 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCCCEEEEEEEEeC
Confidence 999999886 4568999999987655444 567765534332234678888874
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-06 Score=107.21 Aligned_cols=89 Identities=22% Similarity=0.451 Sum_probs=70.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCCCC-eEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~ 2081 (2138)
-|-|+|.|++|-|| .+.-|..||||++++..+.+| ||.+.++++||.|||+|.|-+...=+.+ -|.|+||+++
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d 376 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD 376 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence 48899999999999 344356669999999888744 5999999999999999999443222233 5789999999
Q ss_pred CCCCc-ccceEEEEecc
Q 000124 2082 TFGKS-TLGKVTIQIDK 2097 (2138)
Q Consensus 2082 ~~~k~-~~g~~~~~~~~ 2097 (2138)
++|+. .+|+|.+-...
T Consensus 377 ~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 377 TLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccceeeEEEecCCC
Confidence 99665 69988876654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=102.14 Aligned_cols=117 Identities=27% Similarity=0.462 Sum_probs=98.6
Q ss_pred CCceEEEEEeccccc----ccccCCCCceEEEEecCCCCccccccccCCCCCccc-cceeeecCCCCC-CeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL----KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKE-GFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~-~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.||-|-|.|+.|.+| +.+ ..||+||.+.| ..-+-||.|..|++||.||- -|.|-+||.-+. +.|.|.+.+||
T Consensus 1 mpgkl~vki~a~r~lpvmdkas-d~tdafveik~-~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKAS-DLTDAFVEIKF-ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCCcceeEEEeccCCccccccc-ccchheeEEEe-cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 599999999999999 334 67999999999 56677999999999999995 589999988765 46999999999
Q ss_pred CC-CCcccceEEEEecceeec----------ceecceeecCCCCCCCCCccceEEEEE
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE----------GVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
|+ -.+-+|+|.|.|+-...+ -.|+++|++-+. -+|--+.+++-.|
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt--ihgirgeinvivk 134 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT--IHGIRGEINVIVK 134 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee--cccccceeEEEEE
Confidence 99 789999999999987765 358999999888 7776665555443
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-06 Score=103.90 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=87.2
Q ss_pred CceEEEEEecccccc-------cccCCCCceEEEEecCCCCc-----cccccccCCCCCccccceeeecCCCCCCeEEEE
Q 000124 2009 PGCLTVTIKRGNNLK-------QTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHII 2076 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~ 2076 (2138)
+..|+|+|+.|+.+- +.....||||++.+ -|-+. +|+|.+++.||.|||+|+|.+-.| -=-.|.++
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI-~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISI-AGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEE-eeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 678999999999761 22234689999999 66433 588889999999999999999887 55679999
Q ss_pred EeecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2077 CKSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2077 ~~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
|+++|.++ .+.+|...|.+.-.-.-=| ..+|-+..++.=.+-+|.++|+|+
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~~ 537 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKWS 537 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEeC
Confidence 99999885 5677999999876533222 235554433332346788999995
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-06 Score=86.17 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=68.3
Q ss_pred EEEEEeccccc--cc---ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2012 LTVTIKRGNNL--KQ---TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
|+|+|+.+-|| .+ +-+.++|||.+-.+.-++-+||+ ++||+|||+|.|.+| ++--+.+.||+|+.----
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 68999999999 34 45788999999997777668998 599999999999997 578899999999655444
Q ss_pred ccceEEEEecceeec
Q 000124 2087 TLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~ 2101 (2138)
-+|-.=|.|+|++-+
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 566666777776654
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=86.96 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
-+..+..-|-.+..+-++...+...+|..+++..+.+++..+|..|+..++....+++..+..+.+.|+.+.|+.++.+.
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 45666666666677888889999999999999999999999999999999999999999999999999999999999755
Q ss_pred c-hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh--CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 487 S-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 487 d-~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks--~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+ ..+|..|+.+++.|-++.+.....+...+++..|...|++ .+...+..++..+.+|.......+..+...+....+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 4578999999999999888888888889999999999998 478889999999999987554445555556666666
Q ss_pred hhccccCChhHHHHHHHHHHHHH
Q 000124 564 LWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 564 v~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
..+..+.+.++.+.+..++..+.
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHH
Confidence 66777777888888887776554
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=100.23 Aligned_cols=111 Identities=19% Similarity=0.443 Sum_probs=89.9
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC------
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF------ 2083 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~------ 2083 (2138)
+++||.-|+.| +++-|+.||||....+|. +|+||.+-.++||+|||.|.|-+-.. .|++.|.||+.+.-
T Consensus 297 itltvlcaqgl~akdktg~sdpyvt~qv~kt-krrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT-KRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eEEeeeecccceecccCCCCCCcEEEeeccc-chhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcccHHHHHH
Confidence 67888888888 999999999999998432 34599999999999999999988765 79999999998543
Q ss_pred ------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEE
Q 000124 2084 ------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2084 ------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
..+.+|.-.|...- ..|+..-+|.|...+.|+..++-+.+|+
T Consensus 374 qkl~resddflgqtvievrt--lsgemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRT--LSGEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred HHhhhcccccccceeEEEEe--cccchhhhcchhhccchhhccceEEEEE
Confidence 56789998887543 3799999999998877865555544554
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=106.81 Aligned_cols=146 Identities=20% Similarity=0.345 Sum_probs=108.8
Q ss_pred hhhHHHHHHHh-----------CCCchhhhhhhhhhc----CCceEEEEEecccccccc----cCCCCceEEEEecCCCC
Q 000124 1982 AIPILQMLMKT-----------CPPSFHERADSLLHC----LPGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNGPP 2042 (2138)
Q Consensus 1982 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~~~ 2042 (2138)
+||-|--+++. -|-+|.=-.+.++-- ==|++-|+|.+|+++++. .|.-|||+.++|..-..
T Consensus 393 ~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~ 472 (1227)
T COG5038 393 AIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVI 472 (1227)
T ss_pred cCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccC
Confidence 67777666654 344554444444322 238999999999999544 47889999999833333
Q ss_pred ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-cccceEEEEecceeecceecc-eeecCCCCCCCCCc
Q 000124 2043 RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSG-LFNLNHDNNKDSSS 2120 (2138)
Q Consensus 2043 ~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~ 2120 (2138)
-||||++.+.||+|||+|--++.. .+|+|-|+|||++.|.+ .-+|++.|.|.....++.... .|++.-. .|+ -
T Consensus 473 gkT~v~~nt~nPvwNEt~Yi~lns--~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~-~k~--v 547 (1227)
T COG5038 473 GKTRVKKNTLNPVWNETFYILLNS--FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN-TKN--V 547 (1227)
T ss_pred CccceeeccCCccccceEEEEecc--cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc-Ccc--c
Confidence 389999999999999999888883 79999999999888755 468999999999888766655 8887655 222 2
Q ss_pred cceEEEEEecCC
Q 000124 2121 RTLEIEIIWSNR 2132 (2138)
Q Consensus 2121 ~~~~~~~~w~~~ 2132 (2138)
+.|.-+++|=|.
T Consensus 548 GrL~yDl~ffp~ 559 (1227)
T COG5038 548 GRLTYDLRFFPV 559 (1227)
T ss_pred eEEEEeeeeecc
Confidence 456688888775
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.064 Score=70.80 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=125.0
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000124 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2138)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~ 557 (2138)
.++++|++.|..+|+.|.+.+..|.. ..|-.. .+..|+..|.+.+++.+...+..+..++..-..-+..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W---- 422 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW---- 422 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh----
Confidence 45677778888888888888777775 233222 2345667777777777777777777765422111111
Q ss_pred CCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc
Q 000124 558 GAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G 637 (2138)
-+..+...++....-+ ..++++.++.++....++...++...|..-...
T Consensus 423 -~idtml~Vl~~aG~~V---------------~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~--------------- 471 (866)
T KOG1062|consen 423 -HIDTMLKVLKTAGDFV---------------NDDVVNNLLRLIANAFQELHEYAVLRLYLALSE--------------- 471 (866)
T ss_pred -HHHHHHHHHHhccccc---------------chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhh---------------
Confidence 1222333332222111 234455556666555444444433333221100
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhc-----ChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCC
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSM-----RQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~-----~~e~r~~Ive~GaV~~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~ 710 (2138)
.- ++..+.+.....+.|++..-... +.+.-..+.+..++..+-+++.. .+..+|..|..||.+|+.-.
T Consensus 472 ----~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 472 ----DT-LLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred ----hh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 00 11223445566788887765421 11222234456778888888754 34678899999999998632
Q ss_pred CcccchhhhHHhcCChhhHHh-hhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh
Q 000124 711 KTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDPDIAAEVLL 763 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~-LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~ 763 (2138)
+. .. .-++.|+. ...+.+.++|..|.+-=.-+..+...|+.|.+
T Consensus 547 ~s-~~--------~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe 591 (866)
T KOG1062|consen 547 HS-SS--------ERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILE 591 (866)
T ss_pred cc-cH--------HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 01 12344443 33457888888887765555555666655544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0086 Score=75.84 Aligned_cols=328 Identities=14% Similarity=0.103 Sum_probs=190.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhcc--chhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s--~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
+..++.++++.+++++..|+...+.++.-- ..--..+...|. .|.+-+....+++.-..+.+++.+.....-....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 456777899999999999998777665320 111112222222 3556666777888777777777776532222222
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~---~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.-..|.+|.|.-+|++...++..+....++.++..+.+ .|+.+. .---|+++|++.+.+++++|..+++.++..
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 22468999999999999999999999999999876544 333322 122367889999999999999999999854
Q ss_pred h-chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 589 A-DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 589 ~-e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
- ..+++..|+.=|+..+...+.-..-+++..+ +...--..++.|..=-.+++..+|.....+++.++..
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVA----------EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhH----------hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 2 1233344444343332222211111222211 0001112355555555566788999888888887752
Q ss_pred Chhh-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh----cCCHHHHH
Q 000124 668 RQDI-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK----TSSIDAAE 742 (2138)
Q Consensus 668 ~~e~-r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~----s~s~~Vr~ 742 (2138)
-.+. +..+ .-+.|-|-..|.|.++.-|.-|+..+.+|+-..+. ....++.-.|+++|- .+++.+..
T Consensus 831 ig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g-------tg~eda~IHLlNllwpNIle~sPhvi~ 901 (975)
T COG5181 831 IGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG-------TGDEDAAIHLLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHhhhhccCCCcHHHH
Confidence 1111 1111 12334444566778888888899999998763221 112223344555543 35666666
Q ss_pred H---HHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 743 T---AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 743 e---Al~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
. ++.++.+..+... ....+.+-|+..+..+|. +-|...|....
T Consensus 902 ~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 902 SFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHH-HHHHHHhhhhh
Confidence 4 4455544332111 223444556666666664 55666666553
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00094 Score=81.66 Aligned_cols=274 Identities=16% Similarity=0.147 Sum_probs=187.1
Q ss_pred hHHhhhchhHHHHHHHhcCCchh--hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHH
Q 000124 467 WEAIGKREGIQLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWIL 543 (2138)
Q Consensus 467 ~~~I~e~ggIp~LV~LL~s~d~~--Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nL 543 (2138)
+..|...||+..|++++..++.. +|..+...|-.+.. .+|+..+...| +..++.+-+.. .++..+..+++|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34566789999999999988765 58899999988875 57788887776 55555554443 788899999999999
Q ss_pred hcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 544 CCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
-.|+++...-+++.|++..++-.++..+|.+.++++-+|+|+.-+.- ..
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~---------------~a---------------- 298 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG---------------QA---------------- 298 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhch---------------hH----------------
Confidence 99998888888889999999999999999999999999999974310 11
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH--HHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM--VATQSAR 701 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~--Vk~~AA~ 701 (2138)
+++.+.+..+-..|.-+..+.++-.|..|+-+.+-|+. +.+.-..+.+.|.+..+-.++.+-++. .|..
T Consensus 299 -----~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~--- 369 (832)
T KOG3678|consen 299 -----VQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRFARDA--- 369 (832)
T ss_pred -----HHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchhhhhh---
Confidence 12223344456777777777788899999999999988 777777777777654443444333332 1110
Q ss_pred HHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch--H-HHHHHhcCcHHHHHHHHhCCC
Q 000124 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD--I-AAEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 702 ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e--~-r~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
..-+.+ ...+.++.|+-+|.+..-+.+.-++.-|+.=+.-.. . -+.+.+-|+|..|-++..+.+
T Consensus 370 --hd~aQG-----------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d 436 (832)
T KOG3678|consen 370 --HDYAQG-----------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD 436 (832)
T ss_pred --hhhhcc-----------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch
Confidence 111110 123367778888886654444433333332222111 1 123445678888888888777
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000124 779 SEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..-...|.++|.-++..-
T Consensus 437 ~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 437 EVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 766777888887776543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.5e-05 Score=98.29 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=85.1
Q ss_pred CceEEEEEeccccc--------ccccCCCCceEEEEecCCCC-----ccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2009 PGCLTVTIKRGNNL--------KQTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
+..|.|+|+.|+++ .++....||||++.+ -|-+ ++||+|++|.||.|||+|+|.+-.| -=-.|.+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei-~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGI-AGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEE-eccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEE
Confidence 36799999999874 112134588999999 4433 4699999999999999999999886 4579999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|+++|.+ +.+.+|..+|.++..-.-=| .-+|-+..+..=..-+|.+|++|.
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~~ 581 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEFV 581 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEeC
Confidence 99999876 56789999999876533222 224444433322334788898884
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=82.72 Aligned_cols=379 Identities=15% Similarity=0.162 Sum_probs=230.8
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
++..+.+...++.++.++...+.. -........++.+++++..+.+.+..+|-.||+.|.|++.-... ....--+...
T Consensus 50 d~a~s~~~n~rkGgLiGlAA~~ia-Lg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iF 127 (675)
T KOG0212|consen 50 DYAYSPHANMRKGGLIGLAAVAIA-LGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIF 127 (675)
T ss_pred HhccCcccccccchHHHHHHHHHH-hccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHH
Confidence 344566666666555555443321 11112225678899999999999999999999999999762100 0000012223
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhh----c-hhhHHHHHHHhc----CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAA----D-SATINQLLALLL----GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----e-~~aI~~Li~LL~----~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
..+.++..+.+..++. ++..|-.+..+. . +=-++.++.+|+ .-++..+.....=+..|- ..+.-+++.-
T Consensus 128 dvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~y 205 (675)
T KOG0212|consen 128 DVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISY 205 (675)
T ss_pred HHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhc
Confidence 3455666666666554 444455554431 1 113455555554 456666666665555542 2222233222
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc---ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM---RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~---~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
-...++.|..++.++++++|..+-.+|.++... .|..- --...++.++.-+.+.++.++..|..=+..+..
T Consensus 206 ---l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 206 ---LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred ---chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 244678889999999999998777766665431 22211 224567888888899999999988777776664
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCH-HHHHHHHHH---HHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAA---LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~-~Vr~eAl~A---LaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
. +. ...-..-.|+...++.++.+... .+++.+... |..+.+.+....++--...+..+.+++.++..+.|-.
T Consensus 280 i-~g---~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~ 355 (675)
T KOG0212|consen 280 I-PG---RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIA 355 (675)
T ss_pred C-CC---cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHH
Confidence 2 21 11223345666666777766544 344433332 2233333333323322346778888999999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchH
Q 000124 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIE 864 (2138)
Q Consensus 785 Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~ 864 (2138)
+..-+..|-...|. +.+.- -.....-|+..|.+.++ .+...++..++.++.+.+.+... ..+.
T Consensus 356 ~L~Wi~~l~~~~p~-ql~~h---~~~if~tLL~tLsd~sd--~vvl~~L~lla~i~~s~~~~~~~-----------~fl~ 418 (675)
T KOG0212|consen 356 VLNWIILLYHKAPG-QLLVH---NDSIFLTLLKTLSDRSD--EVVLLALSLLASICSSSNSPNLR-----------KFLL 418 (675)
T ss_pred HHHHHHHHHhhCcc-hhhhh---ccHHHHHHHHhhcCchh--HHHHHHHHHHHHHhcCcccccHH-----------HHHH
Confidence 98888777766542 21110 14456667777765444 45888999999999765544322 2578
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 865 PLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 865 ~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.|.++...+...++.+|.-|+.++|-
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 88899999888899999988888876
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=88.97 Aligned_cols=219 Identities=20% Similarity=0.181 Sum_probs=146.2
Q ss_pred cHHHHHHHHhc--CCHHHHHHHHHHHHHhccCchhHHHHHhc-------CChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 000124 85 AMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLG-------GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 85 gVp~LV~LLks--~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-------G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
.+..++.+|+. .++++..+++.++..|..++..+...... ..+.++++++.++|..++..|+.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 36677777764 58899999999998887665544443322 3578999988889999999999999999976
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCC-CChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhh------cc-
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNK-QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL------SS- 227 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~-ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL------~s- 227 (2138)
+..+.. -...+.++.+++.+.+... .+..++..++.+|.+|...++-| ..+.+.+|++.+...+ .+
T Consensus 136 ~~~~~~-----~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R-~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 136 GPKRSE-----KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR-QVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp TTT--H-----HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH-HHHHTHHHHHHHHHHHH--------
T ss_pred CCcccc-----chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH-HHHHhcCcHHHHHHHHHhhcccCCC
Confidence 432111 1114567778777764221 12335678899999999876555 6777799999999999 22
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-HHHHHHhcCCHHHH
Q 000124 228 DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKKAVVAADGVPVL 306 (2138)
Q Consensus 228 ~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-~Rk~i~e~ggL~~L 306 (2138)
...+.+..++.++|.|+. +++....+...+.++.|+.+++....+.+-+-+..++.|+.....+ ....|+..|+++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 246788999999999994 3444456677779999999998667778899999999999986443 66677766655555
Q ss_pred HHhh
Q 000124 307 IGAI 310 (2138)
Q Consensus 307 I~LL 310 (2138)
-.+.
T Consensus 289 ~~L~ 292 (312)
T PF03224_consen 289 QNLS 292 (312)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.27 Score=62.71 Aligned_cols=576 Identities=14% Similarity=0.090 Sum_probs=289.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChH----HHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 89 FISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIP----PLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 89 LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip----~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.+..|++..|.....|+.++..++.-+ .-.+..| .|++-...+ ...++..+..++.+.|... ++
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~---~P-- 167 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE---AP-- 167 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc---CH--
Confidence 345566777777777777776664311 1123344 444444443 5667888899999999632 22
Q ss_pred HHHHHHcCcH--HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-hCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 164 MKIFVTEGVV--PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 164 re~IveaG~I--p~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
...+...+.+ ......++.. .+..++..++++|.+-+..-.++...=.+ .--++..+..-..++.+++..+..+|
T Consensus 168 e~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 1222223332 2222333332 45678888999988733211111000001 11356677777778899999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.++..-.-..-+...+.-......+.+.+ .+.++...+..-...++.. +.--.+. +..+-. .+. |
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeE--eid~~~e--------~~~~pe-~p~--q- 310 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEE--EIDGEME--------DKYLPE-VPA--Q- 310 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHH--HhhhHHH--------Hhhccc-Cch--h-
Confidence 88873211111222222222233334443 3446666666555444432 1100000 000000 000 0
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
...-|..+ +++ +.|.|.+||.
T Consensus 311 -----n~~fa~aa---------------------------v~d---------------------------vlP~lL~LL~ 331 (858)
T COG5215 311 -----NHGFARAA---------------------------VAD---------------------------VLPELLSLLE 331 (858)
T ss_pred -----hcchHHHH---------------------------HHH---------------------------HHHHHHHHHH
Confidence 00001000 111 2233333332
Q ss_pred CC------ChhHHHHHHHHHHH---HhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 401 PH------DNKLVQERVLEAMA---SLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 401 s~------~~e~vr~~Aa~AL~---~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.. +++.+...+..+|- .+.++. +. +....+.-.-+++.+..-++.++.+++..-.+.......-.
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~ 405 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----IM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI 405 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhhhH-----hH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence 21 11222223333221 111111 11 11222223334566777788888888887665443333323
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHHhcCCh
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWILCCHSE 548 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nLs~~sd 548 (2138)
-...+|.+..++.++.--++..++|+++.++.+-. ..+-..|-++..+..+--| .+.+-.++.|...||..|-.
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 35667777777776666789999999999987532 2333457777777665444 67777888999999976422
Q ss_pred hHHH----HHHH--cCCcchhhhcc--ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 549 DIRA----CVES--AGAVPAFLWLL--KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 549 ~~r~----~I~e--~GaI~aLv~LL--kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
..-+ .+.. ...+..|+... ...+...|...-.+|+.|.. ...+.|.. .+..+.
T Consensus 483 ~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~---------------~~~d~V~~----~~a~~~ 543 (858)
T COG5215 483 KAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL---------------ICPDAVSD----ILAGFY 543 (858)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh---------------hcchhHHH----HHHHHH
Confidence 1100 0000 01122222111 11222344444444444432 22222211 111111
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MV 695 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~-~V 695 (2138)
..... .+ ...+..+-+.+... .++++.+-+.+|..+....+...+.+ +.-.+.-++++|.+..+ .+
T Consensus 544 ~~~~~------kl--~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~ 614 (858)
T COG5215 544 DYTSK------KL--DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTA 614 (858)
T ss_pred HHHHH------HH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchh
Confidence 11000 00 00122222222222 35677777777777765433332222 22345667777776533 34
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHH
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRV 773 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~L 773 (2138)
-...-.++.+++.+. +.+....-...+|.|.+-|+..+..+...|+...+.|+. ..+.+ +........|+++
T Consensus 615 ~~dV~~aIsal~~sl----~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~--~y~d~~ms~LvQ~ 688 (858)
T COG5215 615 FGDVYTAISALSTSL----EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN--IYADVLMSSLVQC 688 (858)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHH
Confidence 455567777887643 334445566789999999988888898999999998875 22222 2233456788888
Q ss_pred HhCC--CHHHHHHHHHHHHHhhh
Q 000124 774 LAEG--TSEGKKNASRALHQLLK 794 (2138)
Q Consensus 774 L~~~--~~~Vr~~Aa~AL~nL~~ 794 (2138)
+.+. +.++|-....+.+.++.
T Consensus 689 lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 689 LSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred hcChhhccccchHHHHHHHHHHH
Confidence 8776 45667666666666654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.002 Score=81.17 Aligned_cols=345 Identities=15% Similarity=0.170 Sum_probs=218.2
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 431 AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 431 ~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.+.+++.+..+...+..++.+|+..+.+++.-.... ....-......+.++....+..+|. +++.|-.+-..-...+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccc
Confidence 456788888999999999999999999988642111 1111222334555565555655554 44555444331111111
Q ss_pred HHHhcCCchHHHHHhh----hCCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLE----AGSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLk----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nL 585 (2138)
..-.++.++.+|+ ..++..|......|..|-...+ .+++.- ....+-|+.++.+.+++++.-+-.+|+++
T Consensus 161 ---~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 161 ---STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ---cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0223555555554 4589999999998888855322 222211 34556678899999999998888888877
Q ss_pred HHh----hc----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH-HHHHH
Q 000124 586 IRA----AD----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEY 656 (2138)
Q Consensus 586 s~~----~e----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~-evre~ 656 (2138)
-.. +. .+.++.++.-+.+.++.++..+..=+..+..... ++.. .--+|.+..+...+.+..+ ..++.
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l---~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLL---LYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchh---hhhhhhhhhcccCCCCCccccHHHH
Confidence 543 22 3567778888888888888776555544433221 1121 1234555666666655444 34554
Q ss_pred HHH---HHHHHhhcChhhhhhhhhC-CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh
Q 000124 657 AAS---VLADLFSMRQDICGSLATD-EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2138)
Q Consensus 657 Aa~---ALanL~s~~~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L 732 (2138)
+.. .|..+++ .+..... ++. .++..+.+.+.++..+.|..+..=+..+-...+ .............|++-
T Consensus 312 a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 312 AQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHh
Confidence 433 3445554 2322222 333 467888899999999999988877777765322 23334456678889999
Q ss_pred hhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 733 AKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 733 L~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
|.+.+++|...++..+++++.++..... -..+..|.++..++..-++..+.-++.+||.-
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999986654311 12344466666777777888888888888863
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=83.53 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=138.0
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCcc
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
...+++.++.+++.-++..|+..|..+....+....... .+.++.++..+++ .+...+..|.++|.++.+ ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~- 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK- 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc-
Confidence 477888888889999999999999999875444333322 5667788887765 334567889999999987 33
Q ss_pred cchhhhHHhcCChhhHHhhh-----hc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHH
Q 000124 714 TTNKMSYIAEGDVKPLIKLA-----KT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNA 785 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL-----~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~A 785 (2138)
..|..+++.++++.|..++ .+ .+..++-+++.++..|+-+++....+...+.++.|+++++.. .+++-+-+
T Consensus 182 -~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 182 -EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp -HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred -hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 7899999999999999999 33 335566689999999999999999999999999999998865 68999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
..++.|+....+ +.+...+. ...+.++++.|...+..+..-.+-+..|
T Consensus 261 la~l~Nl~~~~~--~~~~~~mv-~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 261 LAILRNLLSKAP--KSNIELMV-LCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHTTSSSS--TTHHHHHH-HH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccH--HHHHHHHH-HccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998653 22333333 3456778888877777665566655544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.3e-05 Score=96.35 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=84.7
Q ss_pred CCceEEEEEeccccc-----c---cccCCCCceEEEEecCCCC-----ccccccccCCCCCccccceeeecCCCCCCeEE
Q 000124 2008 LPGCLTVTIKRGNNL-----K---QTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLH 2074 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~-----~---~~~~~~~~~~~~~~~~~~~-----~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~ 2074 (2138)
-+..|+|+|+.|+++ + ++-.-.||||++.+ -|.+ |+|||++++.||.|||+|.|.+-.| -=-.|.
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei-~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllR 544 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGI-AGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLR 544 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEE-EECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEE
Confidence 367899999999986 1 11123599999999 6655 4699999999999999999999986 567999
Q ss_pred EEEeecCCC-CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2075 IICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2075 ~~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
++|++++.. +.+.+|..+|.++..-.-=| ..+|-+..+..=..-+|.++|+|.
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~~ 598 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEFV 598 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEeC
Confidence 999999886 55679999999886543222 123333311111234677787773
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0068 Score=80.01 Aligned_cols=433 Identities=16% Similarity=0.164 Sum_probs=238.8
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh---hhhhhhhCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhc
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSN-------TQMVATQSARALGALS 707 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e---~r~~Ive~GaV~~Lv~LL~dg-------s~~Vk~~AA~ALanLa 707 (2138)
.+...+.++++.+++-|-.+...+.+++..++. .++.+.+.=+.+-+-++|+.+ ....+.-|...|+.++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 366778888888877788888888888875443 334577776678889999873 3456667777777777
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~-~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa 786 (2138)
+ ++ +....-.--+-||.|++.+...+. .+...|..+|..++.+|+.+..+.+.|+++.|.+.+.+ ++..++.|.
T Consensus 86 ~--~~--~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 R--DP--ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred C--Ch--hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 6 32 222111223468999999988776 99999999999999999999999999999999998877 788899999
Q ss_pred HHHHHhhhcCCCchhhhhhhhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHH
Q 000124 787 RALHQLLKHFPVGDVLKGNAQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 787 ~AL~nL~~~~~~~d~i~~~i~~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
.++.+++..... +........ ...+..+-......+ ...+.+.+..|+.+-...+... ......+.|+..
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~~------~~~~~~~~W~~~ 231 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPILP------LESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCccc------cccCChhhhHHH
Confidence 999999886431 111111111 223344444443322 3447777777776664431110 011124567766
Q ss_pred HHHh----hhcCC-hHHHHHHHHHHHHhhccCCc--hhhhhhhcccccHHH-----------HHHHHhccCCceeehhhh
Q 000124 866 LVCC----LAEGP-PPLQDKAIEILSRLCGDQPA--VLGDFLMARSSSIGA-----------LADRIMHSSSLEVRVGGA 927 (2138)
Q Consensus 866 Lv~l----l~~~~-~~vq~~AieiL~~L~~~~~~--~~~~~~~~~~~~i~~-----------La~~il~s~~~ev~~~~~ 927 (2138)
+... +.++- +..|..|+...+.++..... ...+...+.+++..- .+..++++...+.... +
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~-~ 310 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPE-K 310 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHH-H
Confidence 6443 33333 44677787777777665421 222222233333322 2223333333333222 2
Q ss_pred HHHHHhcccchhhHHHHH-----------------hhcCCcHHHHHHHHHHhhhhccCCC--CC-----ccccc----CC
Q 000124 928 ALLICAAKEHKKQSMDAL-----------------DLSGYLKPLIYALVDMMKQNSSCSS--LD-----IEVRT----PR 979 (2138)
Q Consensus 928 ~~~i~a~k~~~~~~~~~L-----------------~~~g~~~~~i~~Lv~l~~~~~~~~~--~d-----~~~~~----~~ 979 (2138)
...+++...-=...|.-| ...+.+..-+...++..++..-... |+ ||+-. ..
T Consensus 311 ~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe 390 (543)
T PF05536_consen 311 QRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC
Confidence 222211111111111111 2222222223333333333322211 21 22200 00
Q ss_pred Cccccccc----cccccC-----CcCCCCccchhhHHHH---HHHHHhccCCCCcchheeccchHHHHHHhhcc--CCCC
Q 000124 980 GYMERTAF----QEADDF-----DVPDPATILGGTVALW---LLLIISSFLRNNNVTVMEAGALEALSDKLASY--TSNP 1045 (2138)
Q Consensus 980 ~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~a~~---ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~--~~~~ 1045 (2138)
-+.-|+.. |-+.++ ....|.+.++.-.--| -|++|......-|+.+ .-|+-..|.++|... ...+
T Consensus 391 ~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~-~~~g~~~l~~~l~~~~~~~~~ 469 (543)
T PF05536_consen 391 TSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILL-SNGGWKLLCDDLLKILQSPSG 469 (543)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHH-hCCcHHHHHHHHHHHHHhccc
Confidence 00012222 111111 1111222222222223 3456666666656554 469999999998655 2234
Q ss_pred ccccccchhhhH---HHHHHHHHccCCcc-ccchhhh-chHHHHHH
Q 000124 1046 QAEFEDTEGIWI---SALFLAILFQDANI-VLSPATM-RIIPALAL 1086 (2138)
Q Consensus 1046 q~~~e~~~~~~~---~~~ll~~lf~~~~~-~~~~~~~-~~~~~l~~ 1086 (2138)
.++.++..+.|+ |..||+++-..|+. ++.++++ ..++.|+.
T Consensus 470 ~~~~~~~~~~~l~~~c~illNl~~~e~~~~~~~~~~f~~ll~~l~~ 515 (543)
T PF05536_consen 470 DDDAEDSAEMALVTACGILLNLVVTEPKMDVEEEATFIELLKALLQ 515 (543)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 445555555566 78899999999998 6666655 45566665
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.033 Score=75.23 Aligned_cols=569 Identities=15% Similarity=0.099 Sum_probs=314.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 000124 88 LFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKI 166 (2138)
Q Consensus 88 ~LV~LLks~~~evr~~Aa~~L~~Ls~~-e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~ 166 (2138)
.+..-++..+..-+.+...-+.+++.- ...+. ....+|.+.... ++..++...++.-+.++...-. -..
T Consensus 86 ~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~ 155 (759)
T KOG0211|consen 86 VLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPE 155 (759)
T ss_pred HHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chh
Confidence 333334444445555566666555321 11111 234567777777 5667788888888888775311 111
Q ss_pred HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHh
Q 000124 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN-AAAQSNAASLLARLML 245 (2138)
Q Consensus 167 IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s-~evq~~A~~aL~nLs~ 245 (2138)
+ ..-..+.+-.+.. . ++..+++++...+...+......... . -.-.++..+...+ -..+..+|.+++..+-
T Consensus 156 ~-~~~ll~~le~l~~-~--eet~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~~~sr~sacglf~~~~~ 227 (759)
T KOG0211|consen 156 Y-AHMLLPPLELLAT-V--EETGVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDWFQSRLSACGLFGKLYV 227 (759)
T ss_pred H-HHHhhHHHHhhhH-H--HHHHHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhhhhcchhhhhhhHHhcc
Confidence 1 1112222222222 1 23457788888887776655433110 0 1112222222221 2245566666666552
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~a 325 (2138)
..++ ...+. -+.....-+.++.+..+|..++.-+.+++.. ..+.....+.++.++++..+... .
T Consensus 228 ~~~~---~~vk~-elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddqd---------s 291 (759)
T KOG0211|consen 228 SLPD---DAVKR-ELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQD---------S 291 (759)
T ss_pred CCCh---HHHHH-HHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchh---------h
Confidence 2111 11111 2333444444466678888888777777664 22356667777888887776441 2
Q ss_pred hHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000124 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2138)
Q Consensus 326 lqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e 405 (2138)
+++.|..++.++.+- +.... .. ...+.+.++.......-
T Consensus 292 Vr~~a~~~~~~l~~l-----------~~~~~----------------------------d~-~~~~~~~l~~~~~d~~~- 330 (759)
T KOG0211|consen 292 VREAAVESLVSLLDL-----------LDDDD----------------------------DV-VKSLTESLVQAVEDGSW- 330 (759)
T ss_pred HHHHHHHHHHHHHHh-----------cCCch----------------------------hh-hhhhhHHHHHHhcChhH-
Confidence 777788877665421 11000 00 01222444444444432
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhc
Q 000124 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
.++.........++..- ........-.+....++.....+.+..++.-...++.. +.+....+.....+|.+..+..
T Consensus 331 ~v~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAV--GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred HHHHHHhhhhhhHHHHh--ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence 23333333333332211 01111122345566677776677676666555555543 2233344555555788888888
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
+.+..++...+....++....+..+ .-.-..|.+...+++..+.++.+..+.+..+-..++..........-++.+.
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~~---ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~ 485 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKER---TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV 485 (759)
T ss_pred cccchHHHHHhccccccCccCCcCc---CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh
Confidence 9999999888887776654222110 0123456666777888999999988877777655555444455566788888
Q ss_pred hccccCChhHHHHHHHHHHHHHHhhchhh-HHHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAADSAT-INQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~e~~a-I~~Li~L----L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
.+..+....++....+.+.-++.....+. .+.+..+ +.+...+++..+...+..+............ .+
T Consensus 486 el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~------~i 559 (759)
T KOG0211|consen 486 ELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE------EI 559 (759)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH------hh
Confidence 88777666666666666665554422111 1223233 3344556777777777766544333222222 35
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhh
Q 000124 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2138)
Q Consensus 640 ~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~ 719 (2138)
+.+......++.-.|...+.++..++. -.-..+.....++.+..+..|..+.+|..++..|..+...... .
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~------~ 630 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE------S 630 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch------H
Confidence 666666655556666666555554432 2223455667789999999999999999999999988762222 2
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 720 I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
..+..+.+.+..+-.+.+.+++..|..+++.+
T Consensus 631 ~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 631 VRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 33444556666677778888888777776655
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.36 Score=61.63 Aligned_cols=288 Identities=13% Similarity=0.086 Sum_probs=133.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+.|-.++.+..+-++.+++.++..++..+- ..... ...+..|..+|++.....|-.|.+.|..|+...++. -.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~--- 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VS--- 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-ee---
Confidence 456667777778888899988888876641 11111 235677888888888889999999999888743321 00
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhH
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
-+=+.+-.+..+.+..+-..|...|..-+. .+...+++. -|+.++.=+.++-.-+.-.|.+.|++++-......+
T Consensus 340 -vcN~evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv~---~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l 414 (898)
T COG5240 340 -VCNKEVESLISDENRTISTYAITTLLKTGT-EETIDRLVN---LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL 414 (898)
T ss_pred -ecChhHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHHH---HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH
Confidence 011122222223333333333222222211 111111110 111221111111112222233333333322222223
Q ss_pred HHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhh
Q 000124 595 NQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673 (2138)
Q Consensus 595 ~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~ 673 (2138)
.-|...|. .+.-+-+.++.+++.-+.... ++... .++..|..+.++. +--+-+++.|.-|....|....
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~--p~skE------raLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMEND--PDSKE------RALEVLCTFIEDC--EYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhC--chHHH------HHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC
Confidence 33333332 222233444444443332211 11100 1233333333221 1112233333333321111100
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 674 ~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
-...+..+..-+--.+.-+|..|..||..++-.... . .....+...|..++++.+++||..|..+|.++-.
T Consensus 485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~----~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--V----VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--c----ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 011233333333334667899999999888762221 1 1122355678889999999999999999999863
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=91.89 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=85.6
Q ss_pred CceEEEEEeccccc-----cc---ccCCCCceEEEEecCCCCc-----cccccccCCCCCc-cccceeeecCCCCCCeEE
Q 000124 2009 PGCLTVTIKRGNNL-----KQ---TMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEW-KEGFTWAFDVPPKGQKLH 2074 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w-~~~f~~~~~~~p~~~~l~ 2074 (2138)
+..|+|+|+.|+.+ .+ .....||||++.+ -|-+. +||+++++.||.| ||+|+|.+..|- =-.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei-~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGI-AGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEE-EecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEE
Confidence 55799999999986 11 1122688999998 55432 6999999999999 999999999874 45999
Q ss_pred EEEeecCCCCCc-ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2075 IICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2075 ~~~~~~~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.|++.+.++++ .+|...|.++.. ..|-- ..+|-+..++.=..-+|.+|+.-.+.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~L-r~GYR--~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPEL-KSGVR--AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHh-hCCee--EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999987555 559999999876 33311 23554442332234568888876554
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.003 Score=74.01 Aligned_cols=245 Identities=18% Similarity=0.155 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS 569 (2138)
-|-.|+..|.|+... . .+..+.+...+++...+...+..|+... ...+++.|+..+.+
T Consensus 21 ~r~rALf~Lr~l~~~--~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~d 78 (289)
T KOG0567|consen 21 NRFRALFNLRNLLGP--A---------AIKAITKAFIDDSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLD 78 (289)
T ss_pred HHHHHHHhhhccCCh--H---------HHHHHHHhcccchhhhccchhhhhhhhc-----------cchhhHHHHHHhcc
Confidence 344566666666541 1 1233333333333344444444444443 25678888876654
Q ss_pred --CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH------H--HHhhh-cccch
Q 000124 570 --GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED------L--VQKGS-AANKG 638 (2138)
Q Consensus 570 --~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d------~--v~~~l-~~~Ga 638 (2138)
..|.+|..|+.+|+.+. +....+.+.+..++...+|++.+..|+..+--...... . +.... ...+-
T Consensus 79 esq~pmvRhEAaealga~~---~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ss 155 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIG---DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSS 155 (289)
T ss_pred cccchHHHHHHHHHHHhhc---chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCcccccc
Confidence 45778888888888887 34556667777766666777665555555421100000 0 00000 01112
Q ss_pred hhHHHHhhcCCC-HH-HHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 639 LRSLVQVLNSSN-EE-NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 639 I~aLV~LLks~s-~e-vre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+..|-..+.+.+ +. -|+.|.-.|.|+.. +..|.+++.-+.+++.-.|..++.+++.|-. +.
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~~---- 218 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAFVFGQLQS--PA---- 218 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc--hh----
Confidence 444444444332 22 34555556666544 4567888999999999999999999999964 32
Q ss_pred hhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 717 KMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.|+.|.+.|.+ ..+-||.+|+.||+.++ ++.+++.|.+++.+..+-+++.+.-+|.-+-.
T Consensus 219 --------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 219 --------AIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred --------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68888888866 67889999999999666 56788999999999999999999888865443
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=92.41 Aligned_cols=116 Identities=22% Similarity=0.355 Sum_probs=89.1
Q ss_pred eEEEEEeccccc-ccccCC------CCceEEEEecCCCCc-----ccc-ccccCCCCCccccceeeecCCCCCCeEEEEE
Q 000124 2011 CLTVTIKRGNNL-KQTMGT------TNAFCRLTIGNGPPR-----QTK-VVSHSISPEWKEGFTWAFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~-----~t~-~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~ 2077 (2138)
.|.|.|..|++. .+. ++ .||||.+.+ .|-|. +|| |-+++-||.|+|+|+|.+-.| -=-+|.++|
T Consensus 617 tL~IkI~sGq~~~~~~-~~~~~~~~~dP~v~VeI-~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDF-GKTKFGEISDPDVYVEI-AGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCC-CCCcccccCCCCEEEEE-cccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEE
Confidence 699999999966 222 33 489999998 88776 699 556779999999999999988 668999999
Q ss_pred eecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2078 KSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2078 ~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
++.+.-| .+..|..+|.+.....-=| -.+|-+-.++.=.+-+|.++++|.++
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~~ 746 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVER 746 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEecC
Confidence 9999887 7778999999987543211 12333332344456789999999874
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=92.54 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=99.5
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCccc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~ 2088 (2138)
.|.|.|-+|.|| +|--|..||||-+.+..-|-=+|++|-|++.|-|.|+|+| +-||.=.-|-+.|||+|-...+-+
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~--~iP~~F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYF--EIPRTFRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEE--ecCcceeeEEEEEecccccccccc
Confidence 478999999999 8888999999999997766668999999999999999986 568999999999999994466779
Q ss_pred ceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
|+|-|+=++.-+---+..+|+|.+-..-.-.-|.+++|++-+.-
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 99999999998877889999997753333233344488876654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.03 Score=75.60 Aligned_cols=413 Identities=17% Similarity=0.124 Sum_probs=261.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+..-.+.....+.++..++.-+.+++..- .......+.++.++++..+....+|..|...+.++...-...- =..
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~ 314 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVV 314 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhh
Confidence 44455667777888888888888877542 2255567778889999999999999999999888875211110 122
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
....+.+++..++++..++.........|...-.. ......-++....++++...+.+...+.-...++...
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 35678888888888888888777777666431110 1111233555667777777777777776666665432
Q ss_pred ----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 590 ----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 590 ----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
...++|.+..+..+..++++...+.....+....+.+..+ .-.++.+...+++..+.++.+....+..+-
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti------~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI------SELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc------cccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 2446688888888999988876555444433222221111 123566777888888999999888776665
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
..+.........+..++.+..+-.+....++.+....+..++.... ..+.+....+.+..-+.+....+++.|+
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG------VEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh------hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5445555555666777888888888888888888888888775221 2223333333344446666778899888
Q ss_pred HHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCC
Q 000124 746 AALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2138)
Q Consensus 746 ~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~ 823 (2138)
..|..++. +.++. ....++.+.....+++-..|.....++.-++. .+...+.+....+.+.++..+..
T Consensus 540 ~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~------v~g~ei~~~~Llp~~~~l~~D~v 609 (759)
T KOG0211|consen 540 RNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE------VLGQEITCEDLLPVFLDLVKDPV 609 (759)
T ss_pred HHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH------HhccHHHHHHHhHHHHHhccCCc
Confidence 88887764 22332 12245556655555567778777777775553 33344555667777888776554
Q ss_pred CCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhh
Q 000124 824 MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLC 889 (2138)
Q Consensus 824 ~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~ 889 (2138)
.+ .+..++..|..+.+--.. . .....-++.++.+..+.+..++.+|..+..-+.
T Consensus 610 an--VR~nvak~L~~i~~~L~~-~---------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 610 AN--VRINVAKHLPKILKLLDE-S---------VRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hh--hhhhHHHHHHHHHhhcch-H---------HHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 44 488888887766632111 0 001222444555555666668888877766543
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=75.30 Aligned_cols=409 Identities=14% Similarity=0.046 Sum_probs=241.0
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
.+..++.-+..+++.+|+....+|.-+....... ......+.+.+++...+..-+..+++.++.+..+. .-..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhh
Confidence 3567777888889999999888887776522111 01234567778888888888899999999887532 22334
Q ss_pred HHcCCcchhhhccccCChhHHHH-HHHHH----HHHHHhhchhhHHH---HHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDA-SAMAL----TKLIRAADSATINQ---LLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~-Aa~AL----~nLs~~~e~~aI~~---Li~LL~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
.+.+.+..|.+..++......+. +.-+. .+|...-+...++. +..-..+..+.++..+.++...+....+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 45667777777777665544443 22211 12222223334444 444444666778888877777665432221
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
.++. .++.++.-+....+..+..++..+..+... ....-...-..++|.+.+.|.|..+.+|..+..++.++
T Consensus 251 -aVK~------llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 251 -AVKL------LLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -hhhH------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1111 356666655555889999999999998884 44445556678999999999999999999999999999
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC----CchHHHHHHhcCcHHHHHHHHhCCCHHHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS----DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~----~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr 782 (2138)
+..... +... -.++.|++.+.+++..+.+ +...|..=.- ++.... -.+|-|-+-+.+.+..++
T Consensus 323 ~svidN-~dI~------~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 323 GSVIDN-PDIQ------KIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHhhcc-HHHH------HHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhh
Confidence 872221 1111 2577788888776544333 3333332110 111010 123444466777888999
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCc
Q 000124 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862 (2138)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~ 862 (2138)
+.++.+..|+|.--+-..++...+ ....+.|-..+.+. ...+|..+.++|+.+-+......+. ..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~-----------d~ 454 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFD-----------DL 454 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccc-----------cc
Confidence 999999999997432112221111 22344444444444 3467999999997766432111111 12
Q ss_pred hHHHHHhhhcCChH-HHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH
Q 000124 863 IEPLVCCLAEGPPP-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2138)
Q Consensus 863 L~~Lv~ll~~~~~~-vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2138)
++-+.+........ -+..++..|...+.... ++.-.+|+.++...+.+....+...+|-.+++
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLG------VEKVEDILPEILANASSVLIDERIRDGVIWLF 518 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhccc------chHHHHHHHHHHHHHhhccchhhhccCeeehh
Confidence 33333333332222 36667777777777542 23344566666665555555544444444443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=75.78 Aligned_cols=369 Identities=17% Similarity=0.110 Sum_probs=212.6
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
..+..-+..+.. .+|+....+|..+.-... ........+.+..++...+-..+..++..+..+..+.. ...+.+
T Consensus 99 ~~~~~~~~tps~-~~q~~~~~~l~~~~~~~~---~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~ 172 (569)
T KOG1242|consen 99 EILLEELDTPSK-SVQRAVSTCLPPLVVLSK---GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKE 172 (569)
T ss_pred HHHHHhcCCCcH-HHHHHHHHHhhhHHHHhh---ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhhh
Confidence 444444444433 477777666655421111 11122345667788888888888888888888877632 234445
Q ss_pred chhHHHHHHHhcCCchhhHHH-HHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHHhcCCh
Q 000124 473 REGIQLLISLLGLSSEQHQEY-AVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSE 548 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~-Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nLs~~sd 548 (2138)
.+.+..+.......+...+.. +..+.-....+-.. ..+-..++.+-.+| .+....+|..+..+...+...-+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 566777777776665444332 33332222221111 11223344444444 34577888888777766643211
Q ss_pred hHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000124 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2138)
Q Consensus 549 ~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~ 621 (2138)
.. .-...++.++.-+.+.....+..+...|+.+..+.. ..++|.+.+.|.+.+++++..+.+++-.+..
T Consensus 249 ~~----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 249 AY----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred cc----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 10 001123444433334466778888889988876642 5689999999999999999999999999988
Q ss_pred hhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC----HHHHHHHhccCCHHHHH
Q 000124 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI----VNPCMRLLTSNTQMVAT 697 (2138)
Q Consensus 622 ~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga----V~~Lv~LL~dgs~~Vk~ 697 (2138)
..++++. +. .++.|+..+.+++..+.+ +...|..-. .... ++.-. ++.|.+-+.+.+...++
T Consensus 325 vidN~dI-~~------~ip~Lld~l~dp~~~~~e-~~~~L~~tt-----FV~~-V~~psLalmvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 325 VIDNPDI-QK------IIPTLLDALADPSCYTPE-CLDSLGATT-----FVAE-VDAPSLALMVPILKRGLAERSTSIKR 390 (569)
T ss_pred hhccHHH-HH------HHHHHHHHhcCcccchHH-HHHhhccee-----eeee-ecchhHHHHHHHHHHHHhhccchhhh
Confidence 8777774 33 378888888766544443 222222211 1111 12222 34444455666778999
Q ss_pred HHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC
Q 000124 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 698 ~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~ 777 (2138)
.++..+.|++.-.++ .....-.-...++.|-..+.+..+++|..+..+|+.+..+-..+.. .+.+|.+.+.+.+.
T Consensus 391 ~t~~IidNm~~LveD--p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVED--PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSE 465 (569)
T ss_pred hHHHHHHHHHHhhcC--HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccc
Confidence 999999999973221 2222111122344444455566899999999999888653332222 55667666666544
Q ss_pred CHH-HHHHHHHHHHHhhh
Q 000124 778 TSE-GKKNASRALHQLLK 794 (2138)
Q Consensus 778 ~~~-Vr~~Aa~AL~nL~~ 794 (2138)
... -+.-++..|+..+.
T Consensus 466 k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 466 KSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred hhhhhhHHHhhhHHHHHh
Confidence 322 24444445544443
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.071 Score=66.36 Aligned_cols=351 Identities=15% Similarity=0.097 Sum_probs=216.2
Q ss_pred CcHHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhHHHHHhc-------CChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 000124 84 QAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLG-------GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 84 GgVp~LV~LLks~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-------G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
..+-+++.++... .++....++..+-.|-.....+..+.+. -.-.+.+++|.+.+.-..+...+++..++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4577888888764 5778888888887765555544444321 2367889999998888888899999999987
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHH
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQ 233 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq 233 (2138)
|.. .-.+.+.-+-. ..|-.++++....+ -...+.++|-.+...++-| -.+....|+..++..+.+. +-++|
T Consensus 145 g~~-~~~~~e~~~~~---~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 145 GNC-KMELSELDVYK---GFLKEQLQSSTNND--YIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred ccc-cccchHHHHHH---HHHHHHHhccCCCc--hHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHH
Confidence 652 11111222222 33444455433223 4567889999998887665 5566688999999988432 45788
Q ss_pred HHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCH------HHHHHHHhcCCHHHHH
Q 000124 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLI 307 (2138)
Q Consensus 234 ~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~------e~Rk~i~e~ggL~~LI 307 (2138)
-..+.+++.|+. ++...+.+...+.++.|..++..+....+-+-...++.|+..+.+ +....++..+ ++.-+
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTL 295 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHH
Confidence 889999999983 444446666778999999999866666777888888999988643 2222333333 33333
Q ss_pred HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 000124 308 GAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387 (2138)
Q Consensus 308 ~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~ 387 (2138)
+.+.... +. + +--...+.++. +.|. .-.-.++..+++..
T Consensus 296 ~~L~~rk-----ys-D----EDL~~di~~L~-----------e~L~---------~svq~LsSFDeY~s----------- 334 (442)
T KOG2759|consen 296 QSLEERK-----YS-D----EDLVDDIEFLT-----------EKLK---------NSVQDLSSFDEYKS----------- 334 (442)
T ss_pred HHHHhcC-----CC-c----HHHHHHHHHHH-----------HHHH---------HHHHhhccHHHHHH-----------
Confidence 3332211 00 0 00111111111 0000 00000000000000
Q ss_pred hhhHHHHHHHHcCCCC----hhHHHHHHHHHHHHhhcCchhHHHHhhh--chHHHHHHHHccCC-HHHHHHHHHHHHHhh
Q 000124 388 ARQIEDILVMLLKPHD----NKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIGLITMAT-ADVREYLILSLTKLC 460 (2138)
Q Consensus 388 ~~~Ie~~LV~LL~s~~----~e~vr~~Aa~AL~~L~~n~~~~~~L~e~--~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls 460 (2138)
+..-+.|.-.. ..-.++ +...+.+. ..++.|+.++..++ +.....|+.-++...
T Consensus 335 -----El~sG~L~WSP~Hk~e~FW~e--------------Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 335 -----ELRSGRLEWSPVHKSEKFWRE--------------NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV 395 (442)
T ss_pred -----HHHhCCcCCCccccccchHHH--------------hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence 00000010000 000111 11223333 35778899988755 777888889999999
Q ss_pred hccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhh
Q 000124 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~ 503 (2138)
+..|..+..+.+.||=+.++++++++|+++|.+|+.++..|-.
T Consensus 396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9989999999999999999999999999999999999877754
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=4.5e-05 Score=96.50 Aligned_cols=93 Identities=20% Similarity=0.382 Sum_probs=75.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc--------cccccccCCCCCccccceeeec-CCCC--CCeEEEEEe
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR--------QTKVVSHSISPEWKEGFTWAFD-VPPK--GQKLHIICK 2078 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~t~~~~~~~~p~w~~~f~~~~~-~~p~--~~~l~~~~~ 2078 (2138)
|.|-|..|.|+ -|.+|-.||||++.+ +|++ ||||+++++||+++|.|.|.+- +||. +-|+|..|+
T Consensus 949 L~veVlhA~diipLD~NGlSDPFVviEl--~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDSNGLSDPFVVIEL--IPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred hhhhhhccccccccCCCCCCCCeEEEEe--ccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 67788888888 788999999999998 5655 6999999999999999999874 5666 889999999
Q ss_pred ecCCC-CCcccceEEEEecceeecceecc
Q 000124 2079 SKNTF-GKSTLGKVTIQIDKVVTEGVYSG 2106 (2138)
Q Consensus 2079 ~~~~~-~k~~~g~~~~~~~~v~~~~~~~~ 2106 (2138)
|||-. ..+.-|..-+-|.+|-.-+++.+
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vpGva~~~~ 1055 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPGVAATGG 1055 (1103)
T ss_pred ccceecccccchHHHHhhCCCCCcccCCC
Confidence 99655 44555666666777777776654
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.021 Score=70.77 Aligned_cols=316 Identities=14% Similarity=0.113 Sum_probs=207.1
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHh-------hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVS-------HAEAKKVLIGLITMATADVREYLILSLTKLCRR 462 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~-------e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~ 462 (2138)
.....++.|+.+.+.++....+..-+..+.....-+..+. +...-.+.+.++...+.-+.......+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 3446677777776665565666555555544332221111 123356788899888888888777777777654
Q ss_pred cchhhHHhhhch-hHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHH
Q 000124 463 EVGIWEAIGKRE-GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAH 538 (2138)
Q Consensus 463 s~~~~~~I~e~g-gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~ 538 (2138)
....-.. .+.. -...|...+.+ .+......++.+|..+.. .++.|..++.++++..++..+.+. +-.++-+...
T Consensus 145 g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 3221110 0011 12334555554 677788899999999998 589999999999999999998543 7788889999
Q ss_pred HHHHHhcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhc-----h--------hhHHHHHHHhcC-
Q 000124 539 VLWILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD-----S--------ATINQLLALLLG- 603 (2138)
Q Consensus 539 aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e-----~--------~aI~~Li~LL~~- 603 (2138)
+++-|+.+ +...+.+..-+.++.|..++++. ...+.+-++.++.|+....+ . .-++.-++.|..
T Consensus 223 ciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999984 44445567788999999999865 45788888889999986541 0 112333444432
Q ss_pred --CCcchHHHH---HHHHHHHHhhhcc---------------------hHHHHhh---hc--ccchhhHHHHhhcCCC-H
Q 000124 604 --DSPSSKAHV---IKVLGHVLTMALQ---------------------EDLVQKG---SA--ANKGLRSLVQVLNSSN-E 651 (2138)
Q Consensus 604 --~d~~V~~~A---~~AL~~La~~~~~---------------------~d~v~~~---l~--~~GaI~aLV~LLks~s-~ 651 (2138)
+|+++.... .+-|..=.+..+. +++.+.- +. .-..++.|+.++++++ +
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 233221111 1111110110111 0111110 11 1234788999998875 6
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+-..|+.=+.......|+.+..+.+.|+=..+++++.+.+++||.+|..|+..|..
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 677778888888888899999999999999999999999999999999999988754
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=1.7 Score=63.13 Aligned_cols=985 Identities=16% Similarity=0.101 Sum_probs=451.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHhccCchhHHHHHhcCCh
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCI 127 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks--~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~I 127 (2138)
.+..+....++|..++...+...+...+.+. ..-|..++..+.. ++.+.+..+..+-..++.++..++.+ ...+|
T Consensus 131 sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~--~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~i 207 (2710)
T PRK14707 131 SKNLDSGRCERAVARLARHLRREDKARQTLN--AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGV 207 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHhccccchhhhhc--cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHH
Confidence 3444445577777777766665544444332 2346666666643 46777777777778888877666555 55778
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000124 128 PPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 128 p~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~ 205 (2138)
..++..+.. ++++.+..+...-..|+. +..-+..+-. .+|...++.|..=. +...+..+..+|..=...+
T Consensus 208 a~~lNa~sKWp~~~~c~~aa~~la~~l~~-----~~~l~~~~~~-q~va~~lN~lsKwp--~~~~C~~a~~~lA~rl~~~ 279 (2710)
T PRK14707 208 ATVLNALCKWPDTPDCGNAVSALAERLAD-----ESRLRNELKP-QELGNALNALSKWA--DTPVCAAAASALAERLVDD 279 (2710)
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcC-----cHHHHHhCCh-HHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhhh
Confidence 888888877 467776666555555664 2222344433 34444555553222 1234556665555433322
Q ss_pred CchhHHHHHhCcHHHHHHhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHH
Q 000124 206 DGYWRATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2138)
Q Consensus 206 e~r~~aI~e~GGI~~Lv~lL~s-~s-~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL 283 (2138)
.+. ..-...-.+.-.+..|+. ++ +.++..+..+-..|.+ +++.++.+ +.-.+...++.|..=.+..+-..|...|
T Consensus 280 ~~l-~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~L 356 (2710)
T PRK14707 280 PGL-RKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSAL 356 (2710)
T ss_pred HHH-HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 222 111222234444444443 22 3345555555555553 44444333 3334455555554333334433444444
Q ss_pred -HHHhhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHhhcCchhH--------HHHhhhhcC
Q 000124 284 -EALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPAL--------VVYLGELSQ 353 (2138)
Q Consensus 284 -~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanIsGgis~L--------I~~L~elL~ 353 (2138)
..+.. .++.|+.+- ..|+...++.+.. |... ....+..+|+.-..+...+ +.+...-+.
T Consensus 357 A~rl~~-d~~l~~~l~-~q~~a~~lNalsKWp~~~---------~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnals 425 (2710)
T PRK14707 357 AERLVA-DPELRKDLE-PQGVSSVLNALSKWPDTP---------VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALA 425 (2710)
T ss_pred HHHhcc-CHhhhcccc-hhHHHHHHhhhhcCCCch---------HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhh
Confidence 34444 467776654 5667777776655 3322 2233445554422222221 111111122
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHH-HHhhcCchhHHHHhhhc
Q 000124 354 SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-ASLYGNIFLSQWVSHAE 432 (2138)
Q Consensus 354 ~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL-~~L~~n~~~~~~L~e~~ 432 (2138)
.=.....|.....+++.-+.+ ....+..+..-++...|-.+-+=++.+.. ..++..| ..|..+.++.+.+.-.+
T Consensus 426 KWPd~~~C~~aa~~lA~~la~----d~~l~~~~~p~~va~~LnalSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q~ 500 (2710)
T PRK14707 426 KWPDLPICGQAVSALAGRLAH----DTELCKALDPINVTQALDALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQE 500 (2710)
T ss_pred cCCcchhHHHHHHHHHHHHhc----cHHHHhhcChHHHHHHHHHhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHHH
Confidence 111122333333344332221 11223445555666666666666666533 3334444 34455556655555445
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH-HhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS-LLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~-LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
....|-.|-+-.+......++..|..-..........+. ...+..++. +-+..+....+.++..|..+....+..+..
T Consensus 501 ~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~ 579 (2710)
T PRK14707 501 VVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD 579 (2710)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh
Confidence 555555555555555555555444332222122222222 222333333 334555556666666666654433333333
Q ss_pred HHhcCCchHHHHHhhh-C-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHH-HHH
Q 000124 512 ITAAGGIPPLVQLLEA-G-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTK-LIR 587 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks-~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~n-Ls~ 587 (2138)
.....+..++..|.. + ....+..+.+.-..+.. ....+..+. ...+..++. +-|..+....+.++..|.. +..
T Consensus 580 -L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~-~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~ 656 (2710)
T PRK14707 580 -LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD-PVDVTNVLNALSKWPGTEVCAEVARLLAGRLVG 656 (2710)
T ss_pred -hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhh
Confidence 334456666666543 3 33444444444444443 333322222 222233332 3344444444555444432 221
Q ss_pred hh------chhhHHH-HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHH
Q 000124 588 AA------DSATINQ-LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAAS 659 (2138)
Q Consensus 588 ~~------e~~aI~~-Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ 659 (2138)
+. +...+.- |-.|=+-.+.+....+..+|+... ...++.. ..+ ....+..+++ +-|-++...-..++.
T Consensus 657 ~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rL--a~~~~Lr-~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~ 732 (2710)
T PRK14707 657 DRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL--AADPGLR-KEL-NPVDVANALNALSKWPRTPVCAAVAS 732 (2710)
T ss_pred chhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHH--hcChhhH-hhc-CHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence 11 1112222 222223334444445555554321 2222221 111 2233444444 334444444444555
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-HhcCCCCcccchhhhHHhcCChhhHHhhhhc-C-
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-S- 736 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa-nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~- 736 (2138)
.|+.-....+..+..+-.+++-..|-.+-+=.....-..|+.+|+ .++. . +..+..+. ..-+...++-|.. +
T Consensus 733 ~LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~--~~Lr~aL~-pQ~vAn~LNALSKWPe 807 (2710)
T PRK14707 733 ALAARVVAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLR--E--PDVRDVLK-PREMTNALNALSKWPD 807 (2710)
T ss_pred HHHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--C--cchhhhcC-HHHHHHHHHHhhcCCC
Confidence 555544446666655444444444444334344444455555554 3443 1 13332211 1122223333332 3
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHH
Q 000124 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV 816 (2138)
.+.++..|...=..+..++..+..+-.+++-..|-.+-+=.+...++.|+.+|..-.... ..++..+..++... .+
T Consensus 808 ~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e---~~LR~aL~~Qevan-tL 883 (2710)
T PRK14707 808 TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE---PELRHTLTAHGVVI-VL 883 (2710)
T ss_pred chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC---hhhhhccchHHHHH-HH
Confidence 344554444444456678888877655555555555555567788888888887544332 23333333332222 22
Q ss_pred HhhccCCCC-chhHHHHHHHHHH-HhhcccCCcccCCcccccccCCCchHHHHHhhh-cCChHHHHHHHHHHHHhhccCC
Q 000124 817 DSLNAMDMN-GTDVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA-EGPPPLQDKAIEILSRLCGDQP 893 (2138)
Q Consensus 817 ~LL~s~~~~-~~~~~~AL~ALa~-La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~-~~~~~vq~~AieiL~~L~~~~~ 893 (2138)
+-|+ ++. ...-..|..+|+. |.....-+.... ++.+...+.-+. =+.......|+..|..-+...+
T Consensus 884 NALS--KWPd~~~C~~AA~aLA~rL~~d~~Lrqal~---------aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~ 952 (2710)
T PRK14707 884 NALS--KWPNVPVCAAAASALAERLADEPELRKALS---------AHRVATALNALSKWPDIPVCATAASALAERLSDDP 952 (2710)
T ss_pred hhhc--cCCCcHHHHHHHHHHHHHHhcCHHHHhhcc---------HHHHHHHHhhhccCCCchHHHHHHHHHHHHhccCh
Confidence 2221 222 2224444444442 221111111111 111111111111 1112234444444444443322
Q ss_pred c--------hhhhhhhccccc---------HHHHHHHHhccCCce--eehhhhHHHH-----HhcccchhhHHHHH-h--
Q 000124 894 A--------VLGDFLMARSSS---------IGALADRIMHSSSLE--VRVGGAALLI-----CAAKEHKKQSMDAL-D-- 946 (2138)
Q Consensus 894 ~--------~~~~~~~~~~~~---------i~~La~~il~s~~~e--v~~~~~~~~i-----~a~k~~~~~~~~~L-~-- 946 (2138)
. -+.+.++.=||| ...|+.+|.....+. .---+....+ --+...|.+++..| .
T Consensus 953 ~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL 1032 (2710)
T PRK14707 953 DLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL 1032 (2710)
T ss_pred hhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh
Confidence 1 222333333444 223444543222111 0000111111 00222333333333 0
Q ss_pred --h----cCCcHHHHHHHH-HHhhhhccCCCCCcccccCCCcccccccccccc----------CCcC------------C
Q 000124 947 --L----SGYLKPLIYALV-DMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD----------FDVP------------D 997 (2138)
Q Consensus 947 --~----~g~~~~~i~~Lv-~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~------------~ 997 (2138)
. -++-...+.+.+ .+|| =|| ...+|.+...+.. -+.| =
T Consensus 1033 a~ep~L~~amdaQ~lan~LNALSK------WPd-------e~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707 1033 SNDPGLCKALSSQGLTTVLNALCK------WPE-------MPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred ccCHhhhhhcchHHHHHHHHhhcc------CCC-------chhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcC
Confidence 0 112222233322 3332 244 1112222211111 1111 1
Q ss_pred CCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCccccccchhhhHHHHHHHHHccCCccc-----
Q 000124 998 PATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV----- 1072 (2138)
Q Consensus 998 ~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~~~~~~~~~~ll~~lf~~~~~~----- 1072 (2138)
|+.+-....++.|..+|+ ++....--|.+-++-.+..-| |.-|+++.=.. ..-.|-+-|-.+++++
T Consensus 1100 P~~~~Cr~Aa~~LA~rL~--~~~~l~~~fd~q~vA~~LNAL---SKWp~~~~cr~----Aa~~LA~RL~~d~~Lr~a~~~ 1170 (2710)
T PRK14707 1100 PDSPVCAAAASALAKRLT--DDAGLRHVFDPINVSQALNAL---SKWPGTQACES----AIDVLAATLANAPGLRNALSA 1170 (2710)
T ss_pred CCcHHHHHHHHHHHHHhc--cccchhccCCHHHHHHHHHHH---hcCCCchHHHH----HHHHHHHHhccchhhhhhcCH
Confidence 899999999999999996 444555566766666666666 34455443333 1223334456666663
Q ss_pred --------------cchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcch
Q 000124 1073 --------------LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGI 1114 (2138)
Q Consensus 1073 --------------~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~ 1114 (2138)
+.|+.++++-+|+..|-+++.-=|-|..+.||.+-=--||.+
T Consensus 1171 Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sRl~ 1226 (2710)
T PRK14707 1171 QGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSRLS 1226 (2710)
T ss_pred HHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999877543334443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0062 Score=74.82 Aligned_cols=274 Identities=16% Similarity=0.139 Sum_probs=179.0
Q ss_pred HHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 119 LKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 119 ~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
..+...|++..|++++..+ ...+|..|++.|..+.. .++++.++.-| .-.++.+-+.. +.........+
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~------aeN~d~va~~~-~~~Il~lAK~~--e~~e~aR~~~~ 244 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV------AENRDRVARIG-LGVILNLAKER--EPVELARSVAG 244 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh------hhhhhHHhhcc-chhhhhhhhhc--CcHHHHHHHHH
Confidence 3456679999999999885 44569999999999875 34577777766 44444444332 23457888999
Q ss_pred HHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH-hhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM-LAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 197 aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs-~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
.|.+|-.+++..+..++..||++.++-.....++.+..+|+-+|.|.. ....+.++.+++..+-..|.-+-. ..|.-.
T Consensus 245 il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~-skDel~ 323 (832)
T KOG3678|consen 245 ILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAF-SKDELL 323 (832)
T ss_pred HHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhc-chHHHH
Confidence 999999999999999999999999999999999999999999999887 455556677778777777766654 457788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCC
Q 000124 276 RASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSP 355 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~ 355 (2138)
|..|+.+..-+.. +.+....+.+.|.+..+--++...++. .++.....+ .-|.-+.-+.+|..+|++.
T Consensus 324 R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~----~FARD~hd~-------aQG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 324 RLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPG----RFARDAHDY-------AQGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcc----hhhhhhhhh-------hccCChHHHHHhhhhhhcc
Confidence 9999999988888 466666666666655444444433321 111100000 0122233445556666644
Q ss_pred CchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHh
Q 000124 356 RLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL 418 (2138)
Q Consensus 356 ~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L 418 (2138)
+...++..+. .+|..-. ++ ........|.+-+.+..|..+..+++.. .-..+.++|.-+
T Consensus 392 R~EAq~i~AF-~l~~EAa-IK-s~Q~K~kVFseIGAIQaLKevaSS~d~v-aakfAseALtvi 450 (832)
T KOG3678|consen 392 RLEAQCIGAF-YLCAEAA-IK-SLQGKTKVFSEIGAIQALKEVASSPDEV-AAKFASEALTVI 450 (832)
T ss_pred hhhhhhhHHH-HHHHHHH-HH-HhccchhHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHh
Confidence 4333332222 1221111 11 1234566788888888888888866542 334555555544
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.074 Score=63.68 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCch-----hHHHHHhcCChHHHHHhhc
Q 000124 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-----LRLKVLLGGCIPPLLSLLK 135 (2138)
Q Consensus 61 AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~-----~r~~v~~~G~Ip~Lv~LL~ 135 (2138)
+..+|..|....+.+. ++ .+.+|.|-.-|..++..++.-+|+.++.+..+.+ ....++..|..+.++.+..
T Consensus 63 cVscLERLfkakegah-la---pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAH-LA---PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccchh-hc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 5566666655442221 11 1235555555666788899999999877755432 3344556799999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH--HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH
Q 000124 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW--DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213 (2138)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll--~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~ 213 (2138)
.+|.+|-.+|.+.+..++. -+.+.+.+++......+- .+-...+ ..++......+..+.+-+.......-
T Consensus 139 geddeVAkAAiesikrial-----fpaaleaiFeSellDdlhlrnlaakcn---diaRvRVleLIieifSiSpesaneck 210 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL-----FPAALEAIFESELLDDLHLRNLAAKCN---DIARVRVLELIIEIFSISPESANECK 210 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccCChHHHhHHHhhhh---hHHHHHHHHHHHHHHhcCHHHHhHhh
Confidence 9999999999999999996 466677777766554332 2211111 23455667777777776654444555
Q ss_pred HhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc-cCCCHhHHHHHHHHHHHHhh
Q 000124 214 EAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADALEALSS 288 (2138)
Q Consensus 214 e~GGI~~Lv~lL~s~-s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~-s~sd~~vr~~Aa~aL~nLs~ 288 (2138)
..|-++.|..=|..+ +.-++.+++.....|+ ...+.++.+...|.++.+..++. .++++..+-.+......+..
T Consensus 211 kSGLldlLeaElkGteDtLVianciElvteLa-eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 211 KSGLLDLLEAELKGTEDTLVIANCIELVTELA-ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred hhhHHHHHHHHhcCCcceeehhhHHHHHHHHH-HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 667778777777663 4557888888888888 44556677778899999988884 33444444445444444433
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.48 Score=60.55 Aligned_cols=286 Identities=19% Similarity=0.112 Sum_probs=167.4
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
.|.|-..+++.-+.+...++++++.++..+-. ...+ ...+..|-.+|++.....|..|.++|..|+...... +
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e-
Confidence 45566677777788999999999988763311 1111 224566667788888899999999999998743221 0
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHH----HhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA----LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~----LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.-+=+.+-.+..+.+..+-..|..+|..-. ..+.|..|++ ++.+-++.-+.-+.++++.|+..-+.+..
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLKTG---t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--- 411 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLKTG---TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--- 411 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHHcC---chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH---
Confidence 001111223344555555555555554332 2223333333 33333344344445555555433222110
Q ss_pred hhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 632 GSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 632 ~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
..+.-|.. +++.+.-+-+..++.++..+....|+.++.+ +..|..++.|.. -...+.+.|+-|++..
T Consensus 412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence 12444554 3345577788888888888887777666543 445666665532 2234567777777643
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
|..+.- ...|+.+.+-+--.+.-+|..|+.||...+.+.+. ....+.....|-+++.+.++++|..|+..|.
T Consensus 480 P~a~~P------~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~ 551 (898)
T COG5240 480 PRAKTP------GKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--VVSPQSVENALKRCLNDQDDEVRDRASFLLR 551 (898)
T ss_pred CCCCCc------chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--cccHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 431110 11455555555557788999999999887653210 1112233456778999999999999999999
Q ss_pred Hhhhc
Q 000124 791 QLLKH 795 (2138)
Q Consensus 791 nL~~~ 795 (2138)
++-..
T Consensus 552 ~~~~~ 556 (898)
T COG5240 552 NMRLS 556 (898)
T ss_pred hhhhh
Confidence 98653
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.19 Score=65.84 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=157.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
.-++.|+.++.+.+++.|+..+...+..-++.- ....|.|+.-|.++|+.++-.|+..+|.|++.++.+--
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 447889999999999999999998877645432 34578999999999999999999999999998777633
Q ss_pred cCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-hHHHHHHHHHHHH--HHh-h
Q 000124 515 AGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKL--IRA-A 589 (2138)
Q Consensus 515 aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-evq~~Aa~AL~nL--s~~-~ 589 (2138)
..-|.+.++|.+. +-=+.......+++|+--.....+ ..+++|.++++++.. .+.+.|..+.... +.. +
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 3456677777655 333444556777777664443332 357778888877653 4455555544322 111 1
Q ss_pred c-hh----hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 590 D-SA----TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 590 e-~~----aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
+ .. .+..|-.++.+.|++.+...+-|++.++ ..++..++.- -..++..|.+.++.+|..|...|..+
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~--ktHp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL--KTHPKAVQAH------KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh--hhCHHHHHHh------HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1 11 2344555667888888777777776654 2344444332 45667788888999999999999888
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 000124 665 FSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALS 707 (2138)
Q Consensus 665 ~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa 707 (2138)
.+ .++...+ ++.|+..+.. .....|..-+.-+..++
T Consensus 364 Vs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 364 VS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred hh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 86 4444433 4455554432 22344544444444443
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.12 Score=67.88 Aligned_cols=339 Identities=17% Similarity=0.157 Sum_probs=187.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre 165 (2138)
|..+-+-|+++++.+|.-|+++|..+- ..++.--.+-.+-++..+.++.||+.|+.++-.|.+-+. + -+.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e--~k~ 179 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--E--QKD 179 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--h--hHH
Confidence 444455566667777777777776551 111100001122245556799999999999999987532 1 122
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 166 ~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
. .+..+-.+|.+.+ +.|...|..+...+|.+. ...+ ++--..+|.+|...++=-|...+.+|.+-+.
T Consensus 180 q-----L~e~I~~LLaD~s---plVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 180 Q-----LEEVIKKLLADRS---PLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHHHhcCCC---CcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 2 2333445555544 458889999999998853 1222 2346778888877665566667777766652
Q ss_pred ---hcCCC-----------c----------chhhccchHHHHHH----HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHH
Q 000124 246 ---AFGDS-----------I----------PTVIDSGAVKALVQ----LVGQNNDISVRASAADALEALSSKSIKAKKAV 297 (2138)
Q Consensus 246 ---~~~e~-----------r----------~~l~~~GaL~~LL~----LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i 297 (2138)
..|.. + ......--+..|++ +++ +.+..+-..++.+...++.. .+..
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~-~~~~--- 321 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPK-NQVT--- 321 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCH-HHHH---
Confidence 11100 0 00000111222222 222 34445555566666665553 1111
Q ss_pred HhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhc
Q 000124 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377 (2138)
Q Consensus 298 ~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q 377 (2138)
+....|+.++.++.. .|...+++++.++..
T Consensus 322 ---~i~kaLvrLLrs~~~----------vqyvvL~nIa~~s~~------------------------------------- 351 (968)
T KOG1060|consen 322 ---KIAKALVRLLRSNRE----------VQYVVLQNIATISIK------------------------------------- 351 (968)
T ss_pred ---HHHHHHHHHHhcCCc----------chhhhHHHHHHHHhc-------------------------------------
Confidence 123455555554331 233333333333211
Q ss_pred CCCCCCcccchhhHHHHHHHH-cCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHH
Q 000124 378 KSGVDDEPFDARQIEDILVML-LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2138)
Q Consensus 378 ~~~~~~~~~~~~~Ie~~LV~L-L~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL 456 (2138)
++.-.+|.+..+ +.+.++..++.+=+..|++|.....+...+ +-+...+.+.+..+-..++.++
T Consensus 352 ---------~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL------rE~q~YI~s~d~~faa~aV~Ai 416 (968)
T KOG1060|consen 352 ---------RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL------RELQTYIKSSDRSFAAAAVKAI 416 (968)
T ss_pred ---------chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH------HHHHHHHhcCchhHHHHHHHHH
Confidence 122334555554 345566667777777788876544333322 2345566777776666777888
Q ss_pred HHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 457 TKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 457 ~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
+.++...... ...++.-|++++++.+..+...++..+..|...++.... ..+..|.+++.+
T Consensus 417 GrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldt 477 (968)
T KOG1060|consen 417 GRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDT 477 (968)
T ss_pred HHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhh
Confidence 8777653322 345678899999999999999999999999875443221 234556666643
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.19 Score=66.33 Aligned_cols=437 Identities=15% Similarity=0.140 Sum_probs=228.9
Q ss_pred HHHHHcCCCChhHHHHHHHHH-HHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 394 ILVMLLKPHDNKLVQERVLEA-MASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~A-L~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
-|+.+|++..+. .+..|..- ++-++.+.+.... .+..+....+.+.++++-.--.|...+...++..
T Consensus 39 dL~~lLdSnkd~-~KleAmKRIia~iA~G~dvS~~------Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA----- 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-LKLEAMKRIIALIAKGKDVSLL------FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA----- 106 (968)
T ss_pred HHHHHHhccccH-HHHHHHHHHHHHHhcCCcHHHH------HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----
Confidence 466777776554 44444433 3444555443322 2445666677778887777777777776644321
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.=.|..+-+-|+++|+.+|..|+++|..+-.. ++.-=.+-.+-++..+.++.+|..|+.++-.|=.-..+.+.
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 12467788889999999998888887655331 11111122233444567899999999999888442222222
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDL 628 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~-~~~~d~ 628 (2138)
.+ +..+-.++.+.+|-+...|+.+.-.++-+.- .+-...+.+++.+-++=-+....+.|..-+.. ...+..
T Consensus 180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 22 2334467889999999999988877763310 11112333333332221122222222222211 011100
Q ss_pred HHhh--------------------hcccch----hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHH
Q 000124 629 VQKG--------------------SAANKG----LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684 (2138)
Q Consensus 629 v~~~--------------------l~~~Ga----I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~L 684 (2138)
.... +....- ++..-.++.+.++.+-..++.+++.++-.+ ...+++++|
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaL 327 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKAL 327 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHH
Confidence 0000 000111 233334677788999999999999987521 123568999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChh-hHHhhh-hcCC-HHHHHHHHHHHHHhhCCchHHHHH
Q 000124 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK-PLIKLA-KTSS-IDAAETAVAALANLLSDPDIAAEV 761 (2138)
Q Consensus 685 v~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~-~Lv~LL-~s~s-~~Vr~eAl~ALaNLa~~~e~r~~I 761 (2138)
+++|++.. .+|.-..++++.++...+ +... .+.+.. .+.| ..++.-=+..|.||+......
T Consensus 328 vrLLrs~~-~vqyvvL~nIa~~s~~~~------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~--- 391 (968)
T KOG1060|consen 328 VRLLRSNR-EVQYVVLQNIATISIKRP------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS--- 391 (968)
T ss_pred HHHHhcCC-cchhhhHHHHHHHHhcch------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH---
Confidence 99988743 344444455555543111 1222 233322 2233 344445667777776422211
Q ss_pred HhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 762 i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
..++.|..+.++.+-.+-..|+.+|++-+...- .+ ...+...|+.++++.++.. ..+|...+..|-.
T Consensus 392 ---~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~---sv-----~~tCL~gLv~Llsshde~V--v~eaV~vIk~Llq 458 (968)
T KOG1060|consen 392 ---EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG---SV-----TDTCLNGLVQLLSSHDELV--VAEAVVVIKRLLQ 458 (968)
T ss_pred ---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---ch-----hhHHHHHHHHHHhcccchh--HHHHHHHHHHHHh
Confidence 133445666666666666666666666555321 11 1335566777776544332 5555555444432
Q ss_pred cc-------------------cCCcccCCccccccc-------CCCchHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 842 TK-------------------QGLNFTYPPWAALAE-------VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 842 ~~-------------------~~~~~i~~~~~~~~~-------~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.+ ....+....|..+.- .|..+..+.....++.++++-..++.-.++.-
T Consensus 459 ~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 459 KDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred hChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 11 111122234544432 23334444555556666676666666665543
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00098 Score=70.74 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 435 KVLIGLI-TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 435 ~~LV~LL-~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
+.|++-+ ...+.+.++....-|++++.+ |.++..+.+.+.+..++..+...|+...+.++.+|||+|. +..+...|.
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ 96 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHH
Confidence 3344433 346788899999999999999 8899999999999999999999999999999999999998 688889999
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
+++++|..+..+.++...+...++.++..|+.....-+..+.
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 999999999999999999999999999999875544444444
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=8.9e-05 Score=93.91 Aligned_cols=173 Identities=19% Similarity=0.391 Sum_probs=122.1
Q ss_pred ccchhhhhHHHhhhccchhHhhhhHHHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcC
Q 000124 1929 EAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008 (2138)
Q Consensus 1929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2008 (2138)
+.|-..|-|-+| -.|-|+-||+.+- -+++.....|+|=- +++|= .-+.-||+.-
T Consensus 62 ~ealytvl~~~g--~~d~e~~~e~l~s---y~~~~fg~~~~eh~--------~~~e~---v~~~k~P~~~---------- 115 (1103)
T KOG1328|consen 62 VEALYTITHKLG--QGDVEESQESLYK---YVRNAFGGDAAEHN--------ALMEK---VKQNKPPSVL---------- 115 (1103)
T ss_pred hhhHHhhhHhhc--CCcchhhhhHHHH---HHHHHhCCCHhHhh--------hcccc---ccCCCCCcHH----------
Confidence 455666677777 5566888887653 45677777666531 12221 1233455543
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCC---------------------------c--c-ccccccCCCCCc
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP---------------------------R--Q-TKVVSHSISPEW 2056 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------------~--~-t~~~~~~~~p~w 2056 (2138)
|-|.+.+|.|+ ++.+|-.||||.+-|--|-+ | | |.|-+|++||.|
T Consensus 116 ---l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 116 ---LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred ---HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 44556688888 88888899999876532211 1 3 889999999999
Q ss_pred cccceeeecCCCCCCeEEEEEeecCCC-------------------------------------CCcccceEEEEeccee
Q 000124 2057 KEGFTWAFDVPPKGQKLHIICKSKNTF-------------------------------------GKSTLGKVTIQIDKVV 2099 (2138)
Q Consensus 2057 ~~~f~~~~~~~p~~~~l~~~~~~~~~~-------------------------------------~k~~~g~~~~~~~~v~ 2099 (2138)
+|.|+|.+||- --|.+|+.+||||-= -.+.||-+.|.+..|=
T Consensus 193 ~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 193 SEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999998 789999999999531 1578999999999887
Q ss_pred ecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2100 TEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2100 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
..| ...+|+|.+.+.|+-..|...+.+.-|-+
T Consensus 272 ~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 272 PDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cch-HHHHhccCcccccccccceEEEEEEEeee
Confidence 777 46799999998886555555466655443
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00068 Score=90.00 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=88.5
Q ss_pred CCceEEEEEecccccccccC-------CCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNLKQTMG-------TTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
|-|.|-|||.+|.-+.+.+. +.+|||-+.+++..--+| +++-||+|+|.|.--+.-+ ....+++.||+
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-
Confidence 34999999999975533211 229999999944332257 6677999999999988866 54478999988
Q ss_pred CCCCCcccceEEEEecceeecce-ecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGV-YSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
|-+-+|++.|...+++.-+. +.++|.+.+++.|--+--++.+.+|..+-
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 67889999999999988656 99999999995442222366678887764
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.1 Score=62.62 Aligned_cols=355 Identities=16% Similarity=0.158 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhhcCch---hHHH--HhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHH--
Q 000124 406 LVQERVLEAMASLYGNIF---LSQW--VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL-- 478 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~---~~~~--L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~-- 478 (2138)
.++.-++..++.+..+.+ +... +...+..+.++..+...+.++-..|...+..++.. +..-..|.+..-...
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHH
Confidence 478888888888866543 2222 33667788999999999999999999999999887 455556665554433
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~ 557 (2138)
+..+...-+.-+|......+..+.+-+++.-......|.+..|..-|+. .|.-++..+.+....|+. -+..++++.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhhcchh
Confidence 3333334455677788888888887677776667778888887777776 477778888888888875 45567888889
Q ss_pred CCcchhhhccc--cCChhHHHHHHHHHHHHHHhh------c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 558 GAVPAFLWLLK--SGGPKGQDASAMALTKLIRAA------D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 558 GaI~aLv~LLk--S~~~evq~~Aa~AL~nLs~~~------e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
|.|..++.+.. +.+|--+..+....+.+.... + .-.|+...++...+|++....+..++|.+.+.
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 98888887764 345655565665555554331 1 12345566777888999999999999988765
Q ss_pred hcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000124 623 ALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2138)
Q Consensus 623 ~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ 701 (2138)
....+.+.+. .......++. ........-++.+..+|.+++.....-.+.+ .||....+. +
T Consensus 335 teGadlllkT--gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi-------------tDgkaeerl---r 396 (524)
T KOG4413|consen 335 TEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI-------------TDGKAEERL---R 396 (524)
T ss_pred cchhHHHhcc--CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc-------------cccHHHHHH---H
Confidence 5554443322 0111222222 2222233445667777777765211111111 122121111 1
Q ss_pred HHH--HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh-cCcHHHHHHHHhCC-
Q 000124 702 ALG--ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEG- 777 (2138)
Q Consensus 702 ALa--nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~g~L~~LV~LL~~~- 777 (2138)
++. ..+++.. -.-...+...+..+.++++-.+..++..++..|=....|.. ++.+...+.---+.
T Consensus 397 clifdaaaqstk-----------ldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEha 465 (524)
T KOG4413|consen 397 CLIFDAAAQSTK-----------LDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHA 465 (524)
T ss_pred HHHHHHHhhccC-----------CChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhH
Confidence 111 1111111 11223355667778899999999999999988776666654 44443333221111
Q ss_pred --CHHHHHHHHHHHHH
Q 000124 778 --TSEGKKNASRALHQ 791 (2138)
Q Consensus 778 --~~~Vr~~Aa~AL~n 791 (2138)
..+-|.+.+.++++
T Consensus 466 KaakdAkYeccKAiae 481 (524)
T KOG4413|consen 466 KAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 12345566666654
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0028 Score=67.44 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
..|+.-+....+.+.|+.+..-|+|.+.++.++..+.+.+.+...++-+...++...+.++..|+++|-+ +.+...|.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~e 97 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHH
Confidence 4455545555555688999999999999999999999999999999999999999999999999999998 788899999
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL 525 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL 525 (2138)
.+|+|.++..+.++.+.+...++..+..|+......|..+.. |++++.+
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 999999999999999999999999999999865555555533 4555544
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.41 Score=63.68 Aligned_cols=427 Identities=19% Similarity=0.164 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh
Q 000124 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134 (2138)
Q Consensus 55 ~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL 134 (2138)
.+-|.-.--+|.+.+...+..- -+++..++.=..++++.+|..|.+.++.+--+.-. .-.+.+|.+++
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l 130 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCL 130 (734)
T ss_pred chHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhc
Confidence 3434444444555554432211 24567777777788999999999888777322211 12358999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH
Q 000124 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE 214 (2138)
Q Consensus 135 ~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e 214 (2138)
+++++.+|..++-....+-.. +.+.+...|.++.|.+++.+.+ +.+..+|+.+|..+...+.+.......
T Consensus 131 ~d~~~yvRktaa~~vakl~~~-------~~~~~~~~gl~~~L~~ll~D~~---p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDI-------DPDLVEDSGLVDALKDLLSDSN---PMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcC-------ChhhccccchhHHHHHHhcCCC---chHHHHHHHHHHHHHHhCCCCCccccc
Confidence 999999999999888888752 2467888999999999998543 568889999999998766431010000
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHH
Q 000124 215 AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAK 294 (2138)
Q Consensus 215 ~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~R 294 (2138)
.--+..++..+..-++=-| +.+|-+++...+....+ ....+..+...+++.+ ..+...+...+.++...-+. .
T Consensus 201 ~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~n-~avvlsavKv~l~~~~~~~~-~ 273 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSRE--AEDICERLTPRLQHAN-SAVVLSAVKVILQLVKYLKQ-V 273 (734)
T ss_pred HHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchh--HHHHHHHhhhhhccCC-cceEeehHHHHHHHHHHHHH-H
Confidence 0012222222222211122 23333444222221111 1123444444455433 34555555555555543222 2
Q ss_pred HHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 000124 295 KAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMV 374 (2138)
Q Consensus 295 k~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~ 374 (2138)
....-...-+.++.++..++ + +| ..+|.|+. ....+
T Consensus 274 ~~~~~~K~~~pl~tlls~~~-e-~q-----------yvaLrNi~-------------------------------lil~~ 309 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSSES-E-IQ-----------YVALRNIN-------------------------------LILQK 309 (734)
T ss_pred HHHHHHHhcccceeeecccc-h-hh-----------HHHHhhHH-------------------------------HHHHh
Confidence 22221223334444444433 1 11 12333332 11111
Q ss_pred hhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHH
Q 000124 375 FEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2138)
Q Consensus 375 l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~ 454 (2138)
.+ +.+.. ...+-+.+..++--++..=..++..++...-+.+.+ .-+......-+.+....++.
T Consensus 310 ~p-------~~~~~----~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl------~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 310 RP-------EILKV----EIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVL------AELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred Ch-------HHHHh----HhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHH------HHHHHhhhhhCHHHHHHHHH
Confidence 00 01100 111112223333234444444455444333222211 11223334457788889999
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHH
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAR 533 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vr 533 (2138)
++++++..-++. .+.|+.|+++++..-.-+...++..++.+.+..+..-..+ ++.+..-+.+ .+|+.|
T Consensus 373 aig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~epeak 441 (734)
T KOG1061|consen 373 AIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQEPEAK 441 (734)
T ss_pred Hhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccCChHHH
Confidence 999988763322 5678999999987766677777788888887555443322 2222222333 378888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 534 EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 534 e~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..-.|.++.-+..-++.-. -+..+++-.++...++|..-..+...++-.
T Consensus 442 ~amiWilg~y~~~i~~a~e------lL~~f~en~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 442 AALIWILGEYAERIENALE------LLESFLENFKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred HHHHHHHhhhhhccCcHHH------HHHHHHhhcccchHHHHHHHHHHHHHHHhc
Confidence 8888888877653222211 233344555666777877777777666544
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.33 Score=63.67 Aligned_cols=322 Identities=12% Similarity=0.095 Sum_probs=188.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
+-++.|+.+..+. +|..|+..+..++-. ++ .-+.+.+-|+.-|...++.++-.|+..++.|++.+|.+.-.+
T Consensus 147 ~Dv~tLL~sskpY-vRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY-VRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHhcCchH-HHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 4456677777665 888888888776422 22 113456778999999999999999999999999988877655
Q ss_pred hchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHH-HHHHHHHHHH--HHhcCC
Q 000124 472 KREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQK-AREVAAHVLW--ILCCHS 547 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~-vre~Aa~aL~--nLs~~s 547 (2138)
-|.+..++.+. |.=+....+..+++|+.-.+.-. ...+++|..++++.... +.-.|..++- ++....
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 37788877644 44466677788888887444322 34688999998876432 2222222111 232211
Q ss_pred -hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 548 -EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 548 -d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
+..... .-++..|-.++.+.++.+++-.+-+++.+..... ..--..++++|.+.|++++..+.+.|..+....
T Consensus 291 ~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 291 SDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred CCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 111111 1245666678889999999999999999886522 122356788999999999999888887765322
Q ss_pred cchHHHHhhhcccchhhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC-CHHHHHHHhcc-CCHHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDE-IVNPCMRLLTS-NTQMVATQSA 700 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G-aV~~Lv~LL~d-gs~~Vk~~AA 700 (2138)
.+.. .++.|..-+ .++....|...+.-+-.+|+ ..+-..+.+-. .+..|+.+.+- ++..+..-+.
T Consensus 368 ----Nl~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS--~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~e 435 (877)
T KOG1059|consen 368 ----NLME------IVKTLMKHVEKAEGTNYRDELLTRIISICS--QSNYQYITDFEWYLSVLVELARLEGTRHGSLIAE 435 (877)
T ss_pred ----hHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHHHhccccchhhHHHH
Confidence 2222 144444433 33333555555555555554 12222222221 23445555542 3444444333
Q ss_pred HHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-----------CHHHHHHHHHHHHHhhCC
Q 000124 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-----------SIDAAETAVAALANLLSD 754 (2138)
Q Consensus 701 ~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-----------s~~Vr~eAl~ALaNLa~~ 754 (2138)
+ +.+++. |..-+....|.....++.+. -.+|-.+|+|+++-.+..
T Consensus 436 Q-i~Dv~i--------RV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ 491 (877)
T KOG1059|consen 436 Q-IIDVAI--------RVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEF 491 (877)
T ss_pred H-HHHHhe--------echhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHH
Confidence 2 233332 11112223344444444321 246666788888877653
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00051 Score=91.30 Aligned_cols=145 Identities=24% Similarity=0.293 Sum_probs=107.1
Q ss_pred hhhhhHHHhhhccchhHhhhhHHHHHHHHhhhcCCCcHHHH-hHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCc
Q 000124 1932 TLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVA-KSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010 (2138)
Q Consensus 1932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 2010 (2138)
|+--|-|..-=|-|+-+--|+ ++.|+.-|-+|+ +-+ +-++-=-|
T Consensus 1480 TFFhpllrDe~~~gsp~~~~~--------~~~ps~~p~~iggqV~---------------------------LsIsY~~~ 1524 (1639)
T KOG0905|consen 1480 TFFHPLLRDEKKEGSPAIKES--------KGMPSRNPGEIGGQVK---------------------------LSISYNNG 1524 (1639)
T ss_pred eeechhhhhhhhcCCcccccc--------ccCCCCCccccCceEE---------------------------EEEEEcCc
Confidence 444455555444454433332 577888887776 222 22233379
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCCC----CeEEEEEeec
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKG----QKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~----~~l~~~~~~~ 2080 (2138)
.|+|.|+-+.+| -+----+||||+..+.--+.| |||||.|++||-+||..-|. .=|++ -.|.+.|||+
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~--g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD--GFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec--CCchhhhhhheeeeeeecc
Confidence 999999999998 233267899999999555444 69999999999999987664 33444 3689999999
Q ss_pred CCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+++ -+..||-|+|.|.+|=.-.+--++|.|-..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 888 778999999999999999888899998665
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0068 Score=77.74 Aligned_cols=294 Identities=15% Similarity=0.121 Sum_probs=184.8
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC------hh
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS------ED 549 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s------d~ 549 (2138)
...|+.+..+.+..+|..|+.+|..|+....-.+ -.....++++.+.+.++|..|...++-.+... +.
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3448888889999999999999988876222111 13456678888999999999876666554421 11
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh------
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA------ 623 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~------ 623 (2138)
.+..+ ...+...++..+.+.+..++-.|+.+|+.+....+.=+...|-+=+-++... +..+-+.=..+.+..
T Consensus 274 ~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR-kr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 274 EEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR-KRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh-hhhcccchHHHHhcCCcccCc
Confidence 11111 1345667788888999999999999999887654321111221111110000 000000000010000
Q ss_pred --------cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHH
Q 000124 624 --------LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695 (2138)
Q Consensus 624 --------~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~V 695 (2138)
...|.-...+..+|+-.++|.-++++--++|++|+..++.|+.++|.... ..+.-|+.++.|.-+.+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 00111112356788888889888877889999999999999987776543 35678999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~ 775 (2138)
|..|..+|..++.+.. +++.-++.+++.|.+.+.++|++.-..|++.--.+...-.+.-.+.+.-|..
T Consensus 427 RL~ai~aL~~Is~~l~---------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k--- 494 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA---------IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK--- 494 (823)
T ss_pred HHHHHHHHHHHHHHhe---------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh---
Confidence 9999999999986321 2345678889999999999999888888876433322222221122222222
Q ss_pred CCCHHHHHHHHHHHHHhhhcC
Q 000124 776 EGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 776 ~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
-|+-|...-.|+.+++++.
T Consensus 495 --yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 495 --YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred --CCCCcHHHHHHHHHHhccC
Confidence 2334455666777777765
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.057 Score=71.38 Aligned_cols=433 Identities=16% Similarity=0.158 Sum_probs=242.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcC
Q 000124 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
++......+-+.++-.-..+.+-+...++.. .+.+..++.=.++.++.+|..|++.++.+... .. -.-
T Consensus 54 vvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i-----~ey 121 (734)
T KOG1061|consen 54 VVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KI-----TEY 121 (734)
T ss_pred HHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HH-----HHH
Confidence 4555566666666666677777776655432 34567777777888999999998887776542 11 123
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc------
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------ 590 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------ 590 (2138)
...++.+.+++.++.+|..++-...++-.. ..+...+.|.++.|-+++.+.+|.+..+|..+|..+.....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 567889999999999999999998888543 24456678999999999999999999999999999986642
Q ss_pred --hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 000124 591 --SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2138)
Q Consensus 591 --~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~ 668 (2138)
...+..++..+..-.+--+....+++.. ..+.++ . .....+..+...+++.+..+...+..++.++....
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~---y~p~d~--~---ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAE---YVPKDS--R---EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cCCCCc--h---hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1234445555544333333333333332 211111 0 01123566666777778877777888877776633
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
+. .....-...-++|+.++.... .++--|.+-+.-+..+.+. +.....-.-+++. .+...++.+=+.++
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-------~~~~~~~~Ff~ky--nDPiYvK~eKleil 339 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-------ILKVEIKVFFCKY--NDPIYVKLEKLEIL 339 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-------HHHhHhHeeeeec--CCchhhHHHHHHHH
Confidence 33 233333455567777777666 5555444433333322221 1111110001111 12345666666666
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchh
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~ 828 (2138)
..++.+....+ .+.-+..+..+.+.+.-+++++|+++++...+ + ..+.+..|++++....+..
T Consensus 340 ~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e--~-------~~~cv~~lLell~~~~~yv-- 402 (734)
T KOG1061|consen 340 IELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE--Q-------SNDCVSILLELLETKVDYV-- 402 (734)
T ss_pred HHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh--h-------hhhhHHHHHHHHhhcccce--
Confidence 66664433222 44456666666677777777777777776421 0 0345666777776433332
Q ss_pred HHHHHHHHHHHhhc--c-----------------cCCcccCCcccccc---cCCCc---hHHHHHhhhcCChHHHHHHHH
Q 000124 829 VADALEVVALLART--K-----------------QGLNFTYPPWAALA---EVPSS---IEPLVCCLAEGPPPLQDKAIE 883 (2138)
Q Consensus 829 ~~~AL~ALa~La~~--~-----------------~~~~~i~~~~~~~~---~~~~~---L~~Lv~ll~~~~~~vq~~Aie 883 (2138)
..++...+..+-+- . +...+..-.|..+. +.+.+ ++.+++-..+++..+|-.=+.
T Consensus 403 vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLt 482 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLT 482 (734)
T ss_pred eeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHH
Confidence 33333333333320 0 00000011233322 12333 334444444555556655555
Q ss_pred HHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhh
Q 000124 884 ILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926 (2138)
Q Consensus 884 iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~ 926 (2138)
+.-+++...|. +++..+-..|..++-.++..++|--|
T Consensus 483 a~ik~Fl~~p~------~tq~~l~~vL~~~~~d~~~~dlrDr~ 519 (734)
T KOG1061|consen 483 AAIKLFLKKPT------ETQELLQGVLPLATADTDNPDLRDRG 519 (734)
T ss_pred HHHHHHhcCCc------cHHHHHHHHHhhhhccccChhhhhhH
Confidence 55555555442 23334445566666677776766544
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00055 Score=90.32 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
.-|...+|+++|+ |.+.|||..+.. =|++- ||-..++++||+||++-.|.++.--.|= .|+.||+++.| ..
T Consensus 52 ~~~~~~~~~~~~~-----~~~~~~~~~~~~-~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE-----MKFKDKWLACVS-FGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHL-ARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh-----hccCCcEEEEEE-ecceeeeeccccccCCcccchhhceEeccCCcce-EEEEEEecCCCCHH
Confidence 3578899999988 788899877665 46554 7999999999999999999999877776 59999999999 55
Q ss_pred cccceEEEEecceeec--ceecceeecCCCCCCCCCc
Q 000124 2086 STLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSS 2120 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~ 2120 (2138)
+..|+|.+.|++.... .++.+-|.+.|. +++|++
T Consensus 125 ~lv~~~e~~~t~f~~kqi~elkeaF~lfD~-dgdG~i 160 (644)
T PLN02964 125 TLVGYCELDLFDFVTQEPESACESFDLLDP-SSSNKV 160 (644)
T ss_pred HhhhheeecHhhccHHHHHHHHHHHHHHCC-CCCCcC
Confidence 5678999999998874 557888998888 677764
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=1.9 Score=57.62 Aligned_cols=281 Identities=15% Similarity=0.088 Sum_probs=159.1
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
.+.+-.++++..+.+...++.+++++...... . + ..++..|--++.++....|..|..+|..++......-.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--- 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--- 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 34455677788888999999999988763221 1 1 12555566667788889999999999998763221000
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh---cCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALL---LGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL---~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.+=.-|-.+..+.+-.+-..|..+|..=..... ...+.+...++ .++..-+...+.++|+... +.+
T Consensus 319 --~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~k----- 388 (865)
T KOG1078|consen 319 --VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PRK----- 388 (865)
T ss_pred --ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cHH-----
Confidence 000011122223333333333333322211100 11122222222 2333333344444444322 111
Q ss_pred hhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 632 GSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
..+.+..|..+|+. +.-+-+...+.++..+...+++.++ -++..|+.+..|..- ..-+.+.|+-|+...
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~--~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEF--TQIAVRILHLLGKEG 458 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccc--hHHHHHHHHHHhccC
Confidence 12235666666654 3556677777777777665555443 355667777766432 234566777777633
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
|.. ..-...++.+.+.+.-.+.-+|.+|+.+|+++.. ++.. .+.....+.+++.+.++++|+.|...|
T Consensus 459 P~a------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 459 PKA------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred CCC------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 321 1123356667777777888999999999999973 3322 234455677899999999999999999
Q ss_pred HHhhhc
Q 000124 790 HQLLKH 795 (2138)
Q Consensus 790 ~nL~~~ 795 (2138)
.++-..
T Consensus 528 ~~l~~~ 533 (865)
T KOG1078|consen 528 KNLEEK 533 (865)
T ss_pred HHhhhh
Confidence 988743
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=74.82 Aligned_cols=216 Identities=11% Similarity=0.100 Sum_probs=114.3
Q ss_pred hhhccccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh--cchHHHHhhhcccch
Q 000124 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA--LQEDLVQKGSAANKG 638 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~--~~~d~v~~~l~~~Ga 638 (2138)
|..+..+.++.++.+|+.+|..|.+.-. .......++++.+++..|+..|.+.+......- +.+......-....+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 4445555666666666666655554211 123455666667776667666666555544321 111110111111234
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh----------------------------------------------
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC---------------------------------------------- 672 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r---------------------------------------------- 672 (2138)
...+...+.+.+..+|-.|+.+|..+..-..+..
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~ 362 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEED 362 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhc
Confidence 5566666666666666666666665533211111
Q ss_pred ----hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 673 ----GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 673 ----~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
..++..|+..+++.-|.|.=-+||++|...++.|+.+.|. .. ...+.-|+++++++..+||..|..+|
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA-----~~aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FA-----VRALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233344444455444444445777777777777664333 11 12456667777777677777777777
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..++.+ ..+++.-++.+...+.+.++++|+..-..|++
T Consensus 435 ~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 435 TMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666543 12233445566666666677776665555544
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.057 Score=67.36 Aligned_cols=275 Identities=16% Similarity=0.126 Sum_probs=143.8
Q ss_pred ccCCHHHHHHHHHHHHHhhhc-----cchhhHHhhhchhHHHH-------HHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 442 TMATADVREYLILSLTKLCRR-----EVGIWEAIGKREGIQLL-------ISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 442 ~sss~evq~~Aa~aL~~Ls~~-----s~~~~~~I~e~ggIp~L-------V~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
....+.++.+++..+..+... .++.++.-...+..... -..+.+..+..+...+.++.+++.....+
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~- 383 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN- 383 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-
Confidence 456788899988887765432 22222211112211110 01233444556667777777776421110
Q ss_pred HHHHhcCCchHHHHHhhh----CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHH
Q 000124 510 WAITAAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks----~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nL 585 (2138)
...|--.....++.. .+.-++..|...+..+..|..-.....--..+...+...+.+..-..|.+++|+++|+
T Consensus 384 ---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 384 ---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred ---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 011111111122211 1222444455555555444332222222233444445555666677889999999998
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhh---cCCCHHHHHHHHHHHH
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL---NSSNEENQEYAASVLA 662 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LL---ks~s~evre~Aa~ALa 662 (2138)
+.. |.++.+.++..+.++.+.+. ..+++.. ...+..++.++.++|.
T Consensus 461 TdA------------L~~~~Ps~~s~~eR~sg~ll-------------------~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 461 TDA------------LIVNMPTPDSFQERFSGLLL-------------------LKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHH------------HHcCCCCchHHHHHHHHHHH-------------------HHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 733 44455666666666655432 2222222 2247889999999999
Q ss_pred HHhhcChhh----hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CC
Q 000124 663 DLFSMRQDI----CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2138)
Q Consensus 663 nL~s~~~e~----r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s 737 (2138)
|+...-... -..+.+....+-+....-.+.-.||-+|+.+++||..+ +.. .....-+..-+.+.|..|+.+ .+
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-~a~-~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN-PAL-PLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC-ccc-cccCCCchHHHHHHHHHHHHHhcc
Confidence 987631111 11112222222223334456778999999999999872 110 111111223355667777765 67
Q ss_pred HHHHHHHHHHHHHhhC
Q 000124 738 IDAAETAVAALANLLS 753 (2138)
Q Consensus 738 ~~Vr~eAl~ALaNLa~ 753 (2138)
..||..|+.+|.--..
T Consensus 588 FKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 588 FKVRIRAAAALSVPGK 603 (728)
T ss_pred ceEeehhhhhhcCCCC
Confidence 8899999999976554
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.045 Score=65.63 Aligned_cols=287 Identities=17% Similarity=0.116 Sum_probs=164.0
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e 556 (2138)
..++.++.+.++.+|..|+..+..++.. +.....-.....++.+.++++...+ -+.|+.+|.|++. +...++.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 4578899999999999999999998874 2111111233456778888877666 6788999999998 4555666555
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchh----------hHHHHHHHhc---CCCcc---hHHHHHHHHHHHH
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA----------TINQLLALLL---GDSPS---SKAHVIKVLGHVL 620 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~----------aI~~Li~LL~---~~d~~---V~~~A~~AL~~La 620 (2138)
. .+..++..+.+....+-...+..|.|++..++.- .-..++++.. +.+.. -..+.+..+.++.
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 6667777777777778888899999998764200 0022333332 22111 1223333444443
Q ss_pred hhhcchHHHHhhhcccc--hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 621 TMALQEDLVQKGSAANK--GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~G--aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+... -+..+.+.. ..+.+..+-..++.--|...++.|.|.|. +..+...+...+ +.-|..+
T Consensus 161 ~~~~----gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~e~-~~lLp~i----------- 223 (353)
T KOG2973|consen 161 QFEA----GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLDES-INLLPAI----------- 223 (353)
T ss_pred hhhh----hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc-cchhHHHHhcch-HHHHHHH-----------
Confidence 3222 222222222 23444444442333345578889999888 555555544422 2222221
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-----cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-----s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~L 773 (2138)
|.-++.. .+.++.- ..-++.=+++|. .++++++..-+++|..|+.....|+.+...|+-|.+-.+
T Consensus 224 ----LlPlagp-ee~sEEd-----m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilREl 293 (353)
T KOG2973|consen 224 ----LLPLAGP-EELSEED-----MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILREL 293 (353)
T ss_pred ----HhhcCCc-cccCHHH-----HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHH
Confidence 2223220 0101111 112222225554 368999999999999999888888777665555544443
Q ss_pred H-hCCCHHHHHHHHHHHHHhhhc
Q 000124 774 L-AEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 774 L-~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
- ...++++++.+-.....|...
T Consensus 294 hk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 294 HKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhc
Confidence 2 234666666655555545543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0023 Score=63.43 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=71.6
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHH
Q 000124 681 VNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2138)
Q Consensus 681 V~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~ 759 (2138)
++.|++.| ++.++.+|..|+++|+++.. ..+++.|+.+++++++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57889988 88999999999999996632 136899999999999999999999999773
Q ss_pred HHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHH
Q 000124 760 EVLLEDVVSALTRVLAEG-TSEGKKNASRALH 790 (2138)
Q Consensus 760 ~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~ 790 (2138)
.+.+++.|.+++.++ +..+|..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 456899999988876 5667999998874
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0024 Score=63.29 Aligned_cols=86 Identities=30% Similarity=0.404 Sum_probs=70.7
Q ss_pred hhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 639 LRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 639 I~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
++.|++.+ +++++.+|..++.+|.++.. ..+++.|+.++++.++.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 46788888 77899999999999996643 3568999999999999999999999998852
Q ss_pred hhHHhcCChhhHHhhhhcC-CHHHHHHHHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAKTS-SIDAAETAVAALA 749 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s~-s~~Vr~eAl~ALa 749 (2138)
...++.|.+++.++ +..++..|+.+|+
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23789999988774 5667889998885
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=2 Score=57.40 Aligned_cols=460 Identities=13% Similarity=0.082 Sum_probs=241.4
Q ss_pred HHHHHHHHHhhcCchhHHHHhhhch---HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 409 ERVLEAMASLYGNIFLSQWVSHAEA---KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 409 ~~Aa~AL~~L~~n~~~~~~L~e~~g---I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
..|...|.+|..=-.-+..+.+.++ .-.+..++++.+...++..-.++..++.-.++... +...+..-...
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii------vtsslmkD~t~ 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII------VTSSLMKDMTG 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh------hhHHHHhhccC
Confidence 5566666666321111122333333 33355677888888777777777777765333211 23344444555
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh----hCCHHHHHHH-HHHHHHHhcCChhHHHHHHHcCCc
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----AGSQKAREVA-AHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk----s~d~~vre~A-a~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
.++..|-.|++.|+.+... +-+...-+.++ +..+.+...| +..+..|....+..++... ++.
T Consensus 112 ~~d~yr~~AiR~L~~I~d~-----------~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~n--eiq 178 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDG-----------TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWAN--EVQ 178 (865)
T ss_pred CCcchhHHHHHHHHhhcCc-----------chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHH--hhh
Confidence 6777899999999988763 22222233333 2233333322 3445555554444444422 111
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHH-HHH-hhhcchHHHHhhhcccch
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLG-HVL-TMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~-~La-~~~~~~d~v~~~l~~~Ga 638 (2138)
+ -..+.+..+|+++...|+.+-.++. -++..++..+..+. ++...+.++. ... ...... .....-.
T Consensus 179 e----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-----~~~~s~~ 246 (865)
T KOG1078|consen 179 E----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-----QQADSPL 246 (865)
T ss_pred h----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-----ccchhhH
Confidence 1 1234455789999999988854422 23344444333311 1111111111 111 111110 0011123
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
.+.+-.++++..+.+...|++++.++...+.... ..++..|-.++++.....|-.|.+.|..++...|.-...+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l-----~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL-----APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc-----chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 4445556777889999999999998865332221 12778888899999999999999999999875444100000
Q ss_pred -----hHHhc---CChhhHHhhhhcCCHHHHHH----HHHHHHHhhCCc------hHHHH-----HHhcCcHHHHHHHHh
Q 000124 719 -----SYIAE---GDVKPLIKLAKTSSIDAAET----AVAALANLLSDP------DIAAE-----VLLEDVVSALTRVLA 775 (2138)
Q Consensus 719 -----~I~~~---G~V~~Lv~LL~s~s~~Vr~e----Al~ALaNLa~~~------e~r~~-----Ii~~g~L~~LV~LL~ 775 (2138)
.+-+. =....+--+|+.+...-... .....++++..- ..+.. -...+.+..|-++|+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 00000 01122233344433222221 222222222100 00000 112334555555554
Q ss_pred C-CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccc
Q 000124 776 E-GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWA 854 (2138)
Q Consensus 776 ~-~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~ 854 (2138)
+ |.-+-++....++..+....+ -....+...|.....+- .-...+.+.|..|.... .+..
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~p--------dsKe~~L~~LCefIEDc----e~~~i~~rILhlLG~Eg---P~a~---- 462 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENP--------DSKERGLEHLCEFIEDC----EFTQIAVRILHLLGKEG---PKAP---- 462 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCc--------chhhHHHHHHHHHHHhc----cchHHHHHHHHHHhccC---CCCC----
Confidence 3 345666677777766655321 12244455555555322 22445566666666421 1111
Q ss_pred ccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhc
Q 000124 855 ALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAA 934 (2138)
Q Consensus 855 ~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~ 934 (2138)
+...-+..+-....-.+..+|.+|+.+|.++....+.+ ...|-.+++|.++...+|||--+|..+-.+.
T Consensus 463 ---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--------LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--------cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11223455566666778889999999999987544322 2467899999999999999999998886443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.074 Score=62.84 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=133.6
Q ss_pred ccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 635 ANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
...+++.|+..+... .+-+|-.|+.+|.++.. .+.++.+-++.++....++.-+..|+..+-+....
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 344677777766554 45567777777777663 34455566666666666666666666655431000
Q ss_pred ------------ccchhhhHHhcCChhhHHhhhhcCCH--HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCC
Q 000124 713 ------------KTTNKMSYIAEGDVKPLIKLAKTSSI--DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 713 ------------~d~~r~~I~~~G~V~~Lv~LL~s~s~--~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
++.-. ...+-|..|-..|.+.+. --|..|+..|.|+.+ +..+..|+.-+..++
T Consensus 134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS 200 (289)
T ss_pred ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence 00000 011123334433433222 223357777776653 346777888888889
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccccccc
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2138)
...|..++.++++|-+. .+++.|...|...+++.=++.+|+.||+.++
T Consensus 201 alfrhEvAfVfGQl~s~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa------------------ 248 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA------------------ 248 (289)
T ss_pred HHHHHHHHHHHhhccch--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc------------------
Confidence 99999999999988764 3678888888888888889999999999988
Q ss_pred CCCchHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.+..++.|...+.++.+.++.....+|.-+-.
T Consensus 249 ~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 249 DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999998888876543
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0033 Score=54.09 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=38.1
Q ss_pred CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 754 DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 754 ~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
+++.+..+++.|++|+|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0025 Score=82.00 Aligned_cols=103 Identities=20% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCC----------CC--CCe--EEEEEeec-CCC-CCc
Q 000124 2027 GTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVP----------PK--GQK--LHIICKSK-NTF-GKS 2086 (2138)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~----------p~--~~~--l~~~~~~~-~~~-~k~ 2086 (2138)
|.-||||+++. .|+.| +||+.+|+.+|.|+|-|-|.+..+ |- ++| |.|++|+. +.+ ++.
T Consensus 149 ~~~dp~~~v~~-~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTL-CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEee-cccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 33699999999 77777 899999999999999999987644 11 144 56778883 444 699
Q ss_pred ccceEEEEecceeecceecceeecCCCCCC-----CCCccceEEEEEec
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNK-----DSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~w~ 2130 (2138)
.+|.|.+..+.--.......+|-|.+..++ .|-++.+-+....+
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 999999998887778889999999876333 34455555655544
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0035 Score=66.44 Aligned_cols=99 Identities=21% Similarity=0.402 Sum_probs=72.9
Q ss_pred EEEEEecccccccc----------c-----CCCCceEEEE--e-cCCCCccccccccCCCCCccccceeeec---CCCCC
Q 000124 2012 LTVTIKRGNNLKQT----------M-----GTTNAFCRLT--I-GNGPPRQTKVVSHSISPEWKEGFTWAFD---VPPKG 2070 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~----------~-----~~~~~~~~~~--~-~~~~~~~t~~~~~~~~p~w~~~f~~~~~---~~p~~ 2070 (2138)
|+|-|+||-.|+-- | =.-|+||.++ | .++|+|+||.|-+|-.|+++-.|+|.+. ..+-|
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46778887766210 0 1239999998 4 6788888999999999999999999765 22233
Q ss_pred -----------CeEEEEEeecCCC-----------CCcccceEEEEecceeecc-eecceeec
Q 000124 2071 -----------QKLHIICKSKNTF-----------GKSTLGKVTIQIDKVVTEG-VYSGLFNL 2110 (2138)
Q Consensus 2071 -----------~~l~~~~~~~~~~-----------~k~~~g~~~~~~~~v~~~~-~~~~~~~l 2110 (2138)
.-+.++||-.++. |.=-||+|.|.+.|.+.+. -|.|+|++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 4688999988554 2334899999999998843 47777764
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.6 Score=59.31 Aligned_cols=302 Identities=14% Similarity=0.096 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
.+.+..++-+++..+|..+.++++.+.. +.+.-..+.+.+.--.++.-|... +..-|++|...++.+....+..+.+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3444444445558999999999999987 456666666666555566666543 5667889999988886542222111
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-h----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHH
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-A----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~ 628 (2138)
..+.+.+++.+..+.+...+..|..+|..++-. + ..+++..|++.+.++..++.+....+ +.+..+.+..
T Consensus 106 --~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~---lL~lLd~p~t 180 (371)
T PF14664_consen 106 --PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDT---LLYLLDSPRT 180 (371)
T ss_pred --CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHH---HHHHhCCcch
Confidence 356677888888888899999999999999865 2 36888999999887655544444444 4444455544
Q ss_pred HHhhhcccchhhHHHHhhcC-------CCH--HHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhccCCHHHHHH
Q 000124 629 VQKGSAANKGLRSLVQVLNS-------SNE--ENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks-------~s~--evre~Aa~ALanL~s~~~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
.+-. ...-.+..++.-..+ ++. +.-..+..++..+..+-+...---... .+++.|+..|...++.+|..
T Consensus 181 R~yl-~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYL-RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhh-cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3221 111124444432211 122 344556667766655433322222222 57899999999999999999
Q ss_pred HHHHHHHhcCC-CCc-cc--chhhhHHhcCChhhHHhhhh----------c---CCHHHHH-HHHHHHHHhhCCchHHHH
Q 000124 699 SARALGALSRP-TKT-KT--TNKMSYIAEGDVKPLIKLAK----------T---SSIDAAE-TAVAALANLLSDPDIAAE 760 (2138)
Q Consensus 699 AA~ALanLa~s-~~~-~d--~~r~~I~~~G~V~~Lv~LL~----------s---~s~~Vr~-eAl~ALaNLa~~~e~r~~ 760 (2138)
....+..+.+- .+. .+ .........|-+..--++-. . ...+..+ ..+-. -..
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLl----------l~i 329 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALL----------LAI 329 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHH----------HHH
Confidence 88888887762 121 00 01111122222211111110 0 0011111 11111 124
Q ss_pred HHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhh
Q 000124 761 VLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2138)
Q Consensus 761 Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~ 794 (2138)
+++.|.++.|+++..+. ++.+..+|.-.|+.+..
T Consensus 330 li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 330 LIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 56899999999999887 88999999999987764
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.41 Score=57.86 Aligned_cols=198 Identities=18% Similarity=0.182 Sum_probs=120.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~-~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.-.++++|.+.+|.++..|...+..+... ..+..... ...++.+.+++...++ .+.|+.+|.|++. +..-+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-----~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-----KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-----hHHHH
Confidence 34688999999999999999999888765 33322222 2557888899987555 6788999999996 44557
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-----hCcHHHHHH-hhccCCH--HHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-----AGGVDIIVG-LLSSDNA--AAQSNA 236 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-----~GGI~~Lv~-lL~s~s~--evq~~A 236 (2138)
+++.+. .+..++..+.++. ..+...++..|.|+++.++.....+.. ..|+..+.. +.+.+-. .--...
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~---~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQ---SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcc---cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 777776 7777788777653 246778899999999977543222211 134444444 3333211 122444
Q ss_pred HHHHHHHHhhcCCCcchhhccc-hHHHHHHHhccCCCHhH-HHHHHHHHHHHhhcCHHHHHHHH
Q 000124 237 ASLLARLMLAFGDSIPTVIDSG-AVKALVQLVGQNNDISV-RASAADALEALSSKSIKAKKAVV 298 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~r~~l~~~G-aL~~LL~LL~s~sd~~v-r~~Aa~aL~nLs~~s~e~Rk~i~ 298 (2138)
+.++.+|+ ..+..|..+.+.. +...-+..+.. .+..+ |...+++|.|.+++ ...+..+.
T Consensus 153 A~vf~nls-~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd-~~~h~~lL 213 (353)
T KOG2973|consen 153 APVFANLS-QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFD-AKLHEVLL 213 (353)
T ss_pred HHHHHHHh-hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhcc-chhHHHHh
Confidence 56666766 3334444444433 22222233332 23333 34556777887775 44444444
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=10 Score=55.76 Aligned_cols=694 Identities=18% Similarity=0.158 Sum_probs=314.3
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHH-hcCCHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHH
Q 000124 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL-RSGTPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLL 131 (2138)
Q Consensus 54 s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LL-ks~~~evr~~Aa~~L-~~Ls~~e~~r~~v~~~G~Ip~Lv 131 (2138)
+....+.+...|......++..+..+- ..+|-.++..+ |.++.....+++..| ..++.+...+ .-....++-..+
T Consensus 177 ~~~~c~~aa~~la~~~~~~d~~~~~~~--~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~-~~~~~q~va~~l 253 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVASDDRLRSAMD--AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLR-NELKPQELGNAL 253 (2710)
T ss_pred CCchHHHHHHHHHHHhcCChhhhcccc--hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHH-HhCChHHHHHHH
Confidence 334567777777766666666666663 35666666555 455444455566666 5666664443 333456677777
Q ss_pred Hhhcc-CCHHHHHHHHHHH-HHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHH-HHHhcCCCch
Q 000124 132 SLLKS-ESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGAL-RNLCGDKDGY 208 (2138)
Q Consensus 132 ~LL~s-ed~eVr~aAa~AL-~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL-~nLcs~~e~r 208 (2138)
..|.. .+..+...|+.+| ..++. + .+..+-++.-.+...++.|..-. +..++..|...| ..|..+. .-
T Consensus 254 N~lsKwp~~~~C~~a~~~lA~rl~~-----~-~~l~~al~~q~vanalNalSKwp--d~~vc~~Aa~~la~rl~~d~-~l 324 (2710)
T PRK14707 254 NALSKWADTPVCAAAASALAERLVD-----D-PGLRKALDPINVTQALNALSKWA--DLPVCAEAAIALAERLADDP-EL 324 (2710)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhh-----h-HHHHHhcCHHHHHHHHhhhhcCC--CchHHHHHHHHHHHHHhccH-hh
Confidence 77766 4444444444444 44443 2 22223333333444444443222 222444444443 3443322 11
Q ss_pred hHHHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHH
Q 000124 209 WRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2138)
Q Consensus 209 ~~aI~e~GGI~~Lv~lL~s--~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nL 286 (2138)
..-.+.-++...+..|+. ++..++..+..+-..|+ .+++.++.+. ...+...++.+..=++..+-..++..|-.-
T Consensus 325 -~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~ 401 (2710)
T PRK14707 325 -CKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEH 401 (2710)
T ss_pred -hhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 111222356666666655 33455555555555666 3444444333 345666666665434444444444444333
Q ss_pred hhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHh-------hcCchh-HHHHhhhhcCC-CC
Q 000124 287 SSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANI-------YGGMPA-LVVYLGELSQS-PR 356 (2138)
Q Consensus 287 s~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanI-------sGgis~-LI~~L~elL~~-~~ 356 (2138)
.....+.++.+- ..++...++.+.. |... ....+..+|+-- +..+.+ .|......+.. |+
T Consensus 402 l~~d~~l~~~~~-~Q~van~lnalsKWPd~~---------~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd 471 (2710)
T PRK14707 402 VVDDLELRKGLD-PQGVSNALNALAKWPDLP---------ICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPD 471 (2710)
T ss_pred hccChhhhhhcc-hhhHHHHHHHhhcCCcch---------hHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCC
Confidence 333467776664 5566666666654 4422 222233333321 111222 12222222222 22
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhh----cCchhHHHHhhhc
Q 000124 357 LAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY----GNIFLSQWVSHAE 432 (2138)
Q Consensus 357 ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~----~n~~~~~~L~e~~ 432 (2138)
. ..|......|+..+.+ + ...+..|+...+...|-.|-+.++.. .|..++.-++ ........+...+
T Consensus 472 ~-p~c~~aa~~La~~l~~---~-~~l~~a~~~q~~~~~L~aLSK~Pd~~----~c~~A~~~lA~rl~~~~~l~~~~~~~~ 542 (2710)
T PRK14707 472 T-PICGQTASALAARLAH---E-RRLRKALKPQEVVIALHSLSKWPDTP----ICAEAASALAERVVDELQLRKAFDAHQ 542 (2710)
T ss_pred C-hhHHHHHHHHHHHhcc---c-HHHHhhcCHHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHhccchhhhhhhhhHH
Confidence 2 2233333333332221 1 12345666667777777777777653 3333443332 2223333333334
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc-CCchh-hHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
....+-.+-+..+......++..|..+..+.+.....+ ...+|..++..++ -++.. .+..+.+.-..+.. .++.+.
T Consensus 543 ~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~ 620 (2710)
T PRK14707 543 VVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRK 620 (2710)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhh
Confidence 44444445555666667777777776655544444444 3445666666554 33333 33333333333433 233222
Q ss_pred HHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHHH-HH
Q 000124 511 AITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKL-IR 587 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~nL-s~ 587 (2138)
.+ ....+..++.-| +-++....+.++..|..--..+...+..+. ...|..++. +-|-.+.+....++..|... ..
T Consensus 621 ~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~ 698 (2710)
T PRK14707 621 EL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTPVCAAAAGGMAERLAA 698 (2710)
T ss_pred hc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhc
Confidence 22 222333344433 333444445555444332221222222222 233444443 33445555666666666433 32
Q ss_pred hhc------hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHH
Q 000124 588 AAD------SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2138)
Q Consensus 588 ~~e------~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~A 660 (2138)
.+. ...+..++.-| +=.+......+...|+.-. ...++.. ..+...+.-..|=.+.|-.+.+.-..|+.+
T Consensus 699 ~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL--~~~p~l~-~a~~aQevANaLNALSKWPd~~~C~~AA~a 775 (2710)
T PRK14707 699 DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARV--VAEPRLR-KAFDAQQVATALNALSKWPDNQACAAAANT 775 (2710)
T ss_pred ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH--hcChhhh-hhcCHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 211 11222222222 2222223333333333221 1122111 122222223333334444444433334444
Q ss_pred HH-HHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CC
Q 000124 661 LA-DLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2138)
Q Consensus 661 La-nL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s 737 (2138)
|+ .+.. ++..+..+--+++-. .++-|+. .....-..|+.+|+.-... .. ..+.. .+...|...++-|.. ++
T Consensus 776 LA~rLa~-~~~Lr~aL~pQ~vAn-~LNALSKWPe~~~Cr~AA~~LA~rLa~-dp--~Lr~a-f~AQ~VANaLNALSKWPd 849 (2710)
T PRK14707 776 LAERQLR-EPDVRDVLKPREMTN-ALNALSKWPDTPACAAAASALAARVAD-DP--RLREA-FDVQHVATVLNAMSKWPD 849 (2710)
T ss_pred HHHHHhh-CcchhhhcCHHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHhc-Ch--hHHHh-cCHHHHHHHHHHhccCCC
Confidence 44 4444 555555443333322 2333332 3334444555555433221 11 33332 223334444444433 55
Q ss_pred HHHHHHHHHHHHH-hhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 738 IDAAETAVAALAN-LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 738 ~~Vr~eAl~ALaN-La~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
......|+.+|.- |..++..|..+-..+....|-.+-+=.+...+..|+.+|..-..
T Consensus 850 ~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~ 907 (2710)
T PRK14707 850 NAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA 907 (2710)
T ss_pred chHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh
Confidence 5666666666654 55677777776544444444444444566777777777765443
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.14 Score=64.80 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=138.0
Q ss_pred HHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHH
Q 000124 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTD 140 (2138)
Q Consensus 63 ~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~e 140 (2138)
..|..+.+..+.-|....- ...++.+..++-+++.+++..+.++++.+..+.+.-..+...+.---++..|.. ....
T Consensus 5 N~Lv~l~~~~p~l~~~~~~-~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVL-SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 4455555555544443332 234555555555556999999999999999999988888887765566677766 3566
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHH
Q 000124 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2138)
Q Consensus 141 Vr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~ 220 (2138)
-|++|.+.+..+..... +. ..+..|++..++....... ..++..++.+|+.++-.++ ..+.++||+..
T Consensus 84 ER~QALkliR~~l~~~~-----~~-~~~~~~vvralvaiae~~~---D~lr~~cletL~El~l~~P---~lv~~~gG~~~ 151 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKK-----GP-KEIPRGVVRALVAIAEHED---DRLRRICLETLCELALLNP---ELVAECGGIRV 151 (371)
T ss_pred HHHHHHHHHHHHHHhcC-----Cc-ccCCHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHhhCH---HHHHHcCCHHH
Confidence 79999999998886411 11 1235678888888887643 3589999999999998764 45789999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 221 Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
|.+.+.++..+..+..+.++..+. ++|..|+.+...--+..++..+.
T Consensus 152 L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 152 LLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhh
Confidence 999998876678888888888888 66777776655555666666654
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.9 Score=54.65 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHhhC--Cc---hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhh
Q 000124 736 SSIDAAETAVAALANLLS--DP---DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810 (2138)
Q Consensus 736 ~s~~Vr~eAl~ALaNLa~--~~---e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~g 810 (2138)
....|+..|.++|+|+.. ++ -.-.++++.....-+-...-.+.-.||-+|+.+++||..+..+. +...--...
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~--lq~~~wA~~ 573 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP--LQTAPWASQ 573 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc--ccCCCchHH
Confidence 456788899999999964 21 11122333222333333445567899999999999999985430 111111134
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000124 811 VVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 811 av~~LV~LL~s~~~~~~~~~~AL~ALa~La 840 (2138)
..+.|..++.+.. +-+.+..|+.+|.--+
T Consensus 574 ~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 574 AFNALTSLVTSCK-NFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHHhc-cceEeehhhhhhcCCC
Confidence 5667777776544 3466888888776544
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0059 Score=52.53 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=38.2
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+++++..+++.|++++|+++|+++++.++++|++||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.74 Score=64.85 Aligned_cols=299 Identities=14% Similarity=0.106 Sum_probs=155.8
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
...-|..|+.+++.++... ..+....-...||.|.+.=-+++..++.....+=..|..++...-.... ...++-|+.-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred hhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence 4456778888898888632 2222223345677777766677889988777766667664322111111 3455666767
Q ss_pred cccCChhHHHHHHHHHHHHHHhhch----hhHH----HHHHHhcCCCcchHHHHHHHHHHHHhh---hcchHHHHhhhcc
Q 000124 567 LKSGGPKGQDASAMALTKLIRAADS----ATIN----QLLALLLGDSPSSKAHVIKVLGHVLTM---ALQEDLVQKGSAA 635 (2138)
Q Consensus 567 LkS~~~evq~~Aa~AL~nLs~~~e~----~aI~----~Li~LL~~~d~~V~~~A~~AL~~La~~---~~~~d~v~~~l~~ 635 (2138)
+.+....+|+.+|-+|..|.+..+. +-+| .+.+.+.|=++.|++.+..+...++.. .-+. .+....
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~---~~~~~~ 1124 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV---TNGAKG 1124 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCcccH
Confidence 7788899999999999999887542 2222 233334444555665554444444322 1111 111111
Q ss_pred cchhhHHHHhhc-----CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH-HHHHHHHHHhcCC
Q 000124 636 NKGLRSLVQVLN-----SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA-TQSARALGALSRP 709 (2138)
Q Consensus 636 ~GaI~aLV~LLk-----s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk-~~AA~ALanLa~s 709 (2138)
...+..+..++- +.-+++|..+...+..|+.+.+..... .-...++.|++....-.+.+- .-++++ .|...
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~- 1201 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET- 1201 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH-
Confidence 122333333221 446899999999999998754332111 112456666666666544322 222222 11111
Q ss_pred CCcccchhhhHHh--------------------cCChhhHHhhhhcC-CHHHHHHHHHHHHHhhCC--chHHHHHHhcCc
Q 000124 710 TKTKTTNKMSYIA--------------------EGDVKPLIKLAKTS-SIDAAETAVAALANLLSD--PDIAAEVLLEDV 766 (2138)
Q Consensus 710 ~~~~d~~r~~I~~--------------------~G~V~~Lv~LL~s~-s~~Vr~eAl~ALaNLa~~--~e~r~~Ii~~g~ 766 (2138)
..-|..|..+.. ...++.+.++++.+ .-..+.-++..++.|+.. .+... .-...
T Consensus 1202 -ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKl 1278 (1702)
T KOG0915|consen 1202 -EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKL 1278 (1702)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHH
Confidence 001122221111 12344444444432 112222333333333220 00000 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+..+...+.+.++.+++.-+-+++.|....
T Consensus 1279 l~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 556666777889999999999999998754
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=11 Score=53.91 Aligned_cols=616 Identities=17% Similarity=0.158 Sum_probs=277.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----ccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 88 LFISILRSGTPLAKVNVAATLSVL----CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 88 ~LV~LLks~~~evr~~Aa~~L~~L----s~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.|...+.+.++..|...+-.|..+ +..++..... ........++|.++|+-++..|++-|.-+..-|+. .
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~--~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~--~-- 895 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLML--KEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS--S-- 895 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhcc--HHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--h--
Confidence 344555667888888777666444 2222221111 13336777888887777777776655443332221 1
Q ss_pred HHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000124 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243 (2138)
Q Consensus 164 re~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nL 243 (2138)
.+.+.+..|++-|..++.... .+... ..+.+.|. |+.+...-......=|++|
T Consensus 896 ----~k~~LV~sL~~tl~~Gkr~~~-----------~vs~e-----TelFq~G~-------Lg~Tp~Gg~isTYKELc~L 948 (1702)
T KOG0915|consen 896 ----LKKSLVDSLVNTLTGGKRKAI-----------KVSEE-----TELFQEGT-------LGKTPDGGKISTYKELCNL 948 (1702)
T ss_pred ----hHHHHHHHHHHHHhccccccc-----------eeccc-----hhcccCCc-------CCCCCCCCcchHHHHHHHH
Confidence 223456667776655431100 00110 11223232 2222112233344556666
Q ss_pred HhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000124 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2138)
Q Consensus 244 s~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~ 323 (2138)
+ ..+.+...+-.++++-.|.-...-+.-|+.-+..++.+. ..+-.-+-..-+|.|..+=.+|++..
T Consensus 949 A-------Sdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~V------ 1014 (1702)
T KOG0915|consen 949 A-------SDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKV------ 1014 (1702)
T ss_pred H-------hhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHH------
Confidence 6 233344556666666665433444555555555555532 11111112356677777777776542
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000124 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2138)
Q Consensus 324 ~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~ 403 (2138)
..|+..+|+.--..+.. .-+.+-+....+.|..+ .+ .
T Consensus 1015 ----q~aM~sIW~~Li~D~k~-------------------------------------~vd~y~neIl~eLL~~l-t~-k 1051 (1702)
T KOG0915|consen 1015 ----QDAMTSIWNALITDSKK-------------------------------------VVDEYLNEILDELLVNL-TS-K 1051 (1702)
T ss_pred ----HHHHHHHHHHhccChHH-------------------------------------HHHHHHHHHHHHHHHhc-cc-h
Confidence 12444555532111000 00011111111222222 11 2
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHccCCHHHHHHHH---HHHHHhhhccchh-----hHHhhhch
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLITMATADVREYLI---LSLTKLCRREVGI-----WEAIGKRE 474 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~sss~evq~~Aa---~aL~~Ls~~s~~~-----~~~I~e~g 474 (2138)
.+.+|+.++.||..|..+.+......+- +....+.+.+.+-.+.+|+.+- .+|..+|-...+. ...+ -..
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~-l~~ 1130 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA-LDI 1130 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH-HHH
Confidence 3457888888888886554322211111 1222333333433445555443 4455544321111 1111 112
Q ss_pred hHHHHHH--HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 475 GIQLLIS--LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 475 gIp~LV~--LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.+|.|+. ++ +.-+++|..++..+..|+.+.+. .-...-...+|.|......-++.+.. +++......
T Consensus 1131 iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s~lE~~vLn-------Yls~r~~~~-- 1199 (1702)
T KOG0915|consen 1131 ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNAYSELEPQVLN-------YLSLRLINI-- 1199 (1702)
T ss_pred HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHHccccchHHHH-------HHHHhhhhh--
Confidence 3444443 22 55677999999999999985433 11111223445555544443444332 222211110
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----~~aI~~Li~LL~~~d~-~V~~~A~~AL~~La~~~~~~d 627 (2138)
+..++..+-.-...+.|. - .++..+.+..| .+.+|.+.++++++-- ..+.-++..+..|..-... |
T Consensus 1200 ---e~ealDt~R~s~aksspm-m----eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~-e 1270 (1702)
T KOG0915|consen 1200 ---ETEALDTLRASAAKSSPM-M----ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS-E 1270 (1702)
T ss_pred ---HHHHHHHHHHhhhcCCcH-H----HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc-c
Confidence 111222221111112221 1 12222222222 3567888888886422 2334444444444322110 0
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh-hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD-ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e-~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..-.....+..++..+++.++.++..-+.++..|.....+ .....+ ..++..+-...+..+..++..+.++
T Consensus 1271 ---mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi-----e~~l~~~l~k~es~~siscatis~I 1342 (1702)
T KOG0915|consen 1271 ---MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI-----ETLLADLLGKDESLKSISCATISNI 1342 (1702)
T ss_pred ---cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH-----HHHHHHHhccCCCccchhHHHHHHH
Confidence 0001122477778888888999999999999888764333 333332 2233222222222224455555666
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh-----CCchHHHHHHhcCcHHHHH-HHHhCCCHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL-----SDPDIAAEVLLEDVVSALT-RVLAEGTSE 780 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa-----~~~e~r~~Ii~~g~L~~LV-~LL~~~~~~ 780 (2138)
+....+ ..+. ....+-||+-+-.... +++-.-|.|=. .....+..+.....+-.+. ....+..-.
T Consensus 1343 an~s~e--~Lkn---~asaILPLiFLa~~ee----~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~ 1413 (1702)
T KOG0915|consen 1343 ANYSQE--MLKN---YASAILPLIFLAMHEE----EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWK 1413 (1702)
T ss_pred HHhhHH--HHHh---hHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHH
Confidence 652221 1111 1224555554443322 23333333322 2222233323334444444 344445567
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc----cCCCCchhHHHHHHHHHHHh
Q 000124 781 GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN----AMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~----s~~~~~~~~~~AL~ALa~La 840 (2138)
++..++.++.-++.... ...+...+.++...+. .-.+++ +.+-+.+++...
T Consensus 1414 lr~q~Akai~~~a~~~s-------ss~~~p~ilkl~~~ll~~L~GRiwdG--Ke~iLKAl~~~~ 1468 (1702)
T KOG0915|consen 1414 LRKQAAKAIRVIAEGLS-------SSAPIPVILKLALSLLDTLNGRIWDG--KEEILKALASAF 1468 (1702)
T ss_pred HHHHHHHHHHHHccccc-------ccCChHHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHH
Confidence 88899988888776431 1112234444444443 333445 666666666443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.36 Score=60.42 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=157.4
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCC-CCCh----hhHHHHHHcCcHHHHHH
Q 000124 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL-SDDH----VGMKIFVTEGVVPTLWD 178 (2138)
Q Consensus 104 Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~-nkd~----~gre~IveaG~Ip~Ll~ 178 (2138)
.+.-+..++.-++....+++..+++.++.+|++++.++..+....|..|..... +.+. .-.+.+++.++++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 455566778888988899999999999999999999999999999999987521 1112 23456677788998887
Q ss_pred hhC---CCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCCcch
Q 000124 179 QLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDSIPT 253 (2138)
Q Consensus 179 LL~---s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~r~~ 253 (2138)
-+. .+.+++..=..+.+..+-|+..-.+.....+++.|-+.+|+..+... -..-...|..+|.-+...+.+++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 654 33333333345778888999998888888889998899999866553 2456788888888888666667777
Q ss_pred hhccchHHHHHHHhc----cC----CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 254 VIDSGAVKALVQLVG----QN----NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 254 l~~~GaL~~LL~LL~----s~----sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
.....++..+++-+. ++ ...+.-++-..+|+.+.. .+.+|..+.+..|++..+-+++.
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH
Confidence 777788888887764 22 133455677788888888 48999999999999988887765
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=7.7 Score=51.52 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=73.4
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
..+..|-+++.+....+|--|...++.|+.. +.....+... ...++..|+ ..|..+|+.+...|..++. . .+.+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~-~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-V-SNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-h-hhHH
Confidence 4566777788888888999999999999884 4444444333 677788888 4599999999999999874 2 2223
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
. .|.-|++-+.+.++.+|+..+.-..-|+.
T Consensus 404 ~-----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 404 Q-----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred H-----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3 34457777777888888776655555553
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.94 Score=56.96 Aligned_cols=268 Identities=14% Similarity=0.136 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccC------c----hhHHHHHhcCCh
Q 000124 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD------E----DLRLKVLLGGCI 127 (2138)
Q Consensus 58 re~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~------e----~~r~~v~~~G~I 127 (2138)
.....+-+..++..++-+-.++. .++|+.|+.+|.+.+.++-...+.+|..|... . .....++..+.+
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lve--ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVE--LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHH--hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 34556667777777766655553 68999999999999999999999999888532 1 223445566888
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000124 128 PPLLSLLKSE------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2138)
Q Consensus 128 p~Lv~LL~se------d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nL 201 (2138)
+.|++.+..= +.+....+...+.|+... .++-...+++.|.+.-|+.-+.....-+ .....+..+|.-+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~----r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLail 253 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEV----RPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAIL 253 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc----cHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHH
Confidence 9999888762 333455666777777753 4455677788888888887665543233 3567889999988
Q ss_pred hcCCCchhHHHHHhCcHHHHHHhhcc---CC---HHHHHHHHHHHHHHHh--hcCCCcchhhccchHHHHHHHhccCCCH
Q 000124 202 CGDKDGYWRATLEAGGVDIIVGLLSS---DN---AAAQSNAASLLARLML--AFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2138)
Q Consensus 202 cs~~e~r~~aI~e~GGI~~Lv~lL~s---~s---~evq~~A~~aL~nLs~--~~~e~r~~l~~~GaL~~LL~LL~s~sd~ 273 (2138)
-.++..+...+-.-.|++.+++-+.. .+ .+-++..-..+.+||. ..+.++..+....++.-..-+++. ..
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KK 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HH
Confidence 88887676777788899999987754 12 2344555555566653 556667777766665554444442 22
Q ss_pred hHHHHHHHHHHHHhhcCH--HHHHHHHhcCCHHHHHHhhc-CCchhhhhhhhhhhhHHHHHHHH
Q 000124 274 SVRASAADALEALSSKSI--KAKKAVVAADGVPVLIGAIV-APSKECMQGQRGQALQGHATRAL 334 (2138)
Q Consensus 274 ~vr~~Aa~aL~nLs~~s~--e~Rk~i~e~ggL~~LI~LL~-s~s~e~mq~~~~~alqe~Al~AL 334 (2138)
..+..+..+|-....+.+ .++..+++..|+..+..+.. .|++.+-...+....-++....|
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~sii 395 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSIL 395 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHH
Confidence 456667777777766533 67778888899998887554 34443333333332334433333
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.011 Score=76.67 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=72.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC------CccccccccCCCCCcc-ccceeeecCCCCCCeEEEEEe
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP------PRQTKVVSHSISPEWK-EGFTWAFDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~p~w~-~~f~~~~~~~p~~~~l~~~~~ 2078 (2138)
+|=-|+|.|..|-.| .|+ |..-|||.+.+ -|- .|.|+|+.+.+||.|| |.|+|-+-.| -=-.|..+|.
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr-~i~cPfVevEi-iGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGR-SIACPFVEVEI-IGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVY 1139 (1267)
T ss_pred cceEEEEEEeeccccccCCC-CccCCcEEEEE-eccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEe
Confidence 567899999999999 455 66669999987 443 2337888899999999 9999999988 6678999999
Q ss_pred ecCCC-CCcccceEEEEecc
Q 000124 2079 SKNTF-GKSTLGKVTIQIDK 2097 (2138)
Q Consensus 2079 ~~~~~-~k~~~g~~~~~~~~ 2097 (2138)
+.|.| .+..+|..+..++-
T Consensus 1140 eeDmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred cccccCCcceeeeeecchhh
Confidence 99999 56678998888764
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=9.2 Score=50.86 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=130.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHH
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPP 129 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~ 129 (2138)
..+...-.|+.|.-+|..|-+..++. +.. .+-...++.+|.+.+-.+...+..++-.+++....-.+....-++..
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spDl---~~~-~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~ 232 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPDL---VNP-GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSR 232 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCccc---cCh-hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHH
Confidence 33444444555655666665554332 211 34567788888777666666666666666644333333322233333
Q ss_pred HHHhhcc-------------CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 130 LLSLLKS-------------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 130 Lv~LL~s-------------ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
|.++... +.|..+...+++|.+.=. ..+...+..+.+ +...++...+.+.+....-..+|..
T Consensus 233 L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 233 LSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHH
Confidence 3333321 245566666666666522 223333444433 4444444444222111111111211
Q ss_pred ----HHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCC
Q 000124 197 ----ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNND 272 (2138)
Q Consensus 197 ----aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd 272 (2138)
-..++..+-+..-..+.+ ++..|.++|.+...++|.-++..++.|+.. +.....+.. -.+.++..|....|
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~--h~d~Ii~sLkterD 382 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKK--HQDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHH--HHHHHHHHhccccc
Confidence 122344433333233333 677888888888888898888888888843 222222222 26777888887889
Q ss_pred HhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 273 ISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 273 ~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
..+|..+.+.|-.++.. .+.+.++ .-|+..+.+
T Consensus 383 vSirrravDLLY~mcD~--~Nak~IV-----~elLqYL~t 415 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDV--SNAKQIV-----AELLQYLET 415 (938)
T ss_pred hHHHHHHHHHHHHHhch--hhHHHHH-----HHHHHHHhh
Confidence 99999999999888874 3444444 345555544
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.89 Score=56.47 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccC---
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD--- 114 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~--- 114 (2138)
...+.++|+.+..++ ...|+.++..+..+...+--...+-....-.++.+.+.++.|..+-+..|++++..++-.
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 345888888887755 678999999999988665322222111123578888888888887778888888777533
Q ss_pred chhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhh--CCCC------
Q 000124 115 EDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL--NPKN------ 184 (2138)
Q Consensus 115 e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL--~s~s------ 184 (2138)
.+....+. ....|.|.+++.+. ++.+|..|+.+|..++..+.. +.......++ .+..++... ..+.
T Consensus 120 g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 120 GEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELME--SLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHH--HHHHHHHHHhcCcCCCccccc
Confidence 12222222 35668888888873 677888888888887764322 2221221111 233222222 2111
Q ss_pred -CCChhHHHHHHHHHHHHhcCCCch-hHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 185 -KQDNVVQGFVTGALRNLCGDKDGY-WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 185 -~ed~~V~e~Al~aL~nLcs~~e~r-~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
..++.+...|+.+..-|...-+.. .... -...++.|..+|.+++.++|.+|-.+|+-|.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 112356777777666665544432 1211 1235899999999999999999998888776
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.69 Score=61.05 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=183.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
++.+...+.+....++++|+-++..+-..... .+ .++-+.+-..| ...++..+++|-..|...-. + |
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~---E-r--- 203 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDP---E-R--- 203 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCH---H-H---
Confidence 45555667778889999998777665544111 11 12222333333 46677788888766654432 1 1
Q ss_pred HhcCCchHHHHHhh---hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 513 TAAGGIPPLVQLLE---AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 513 ~~aGaIp~LV~LLk---s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
++.-|..... +-++..+-...+.++.-+..++..+ ..-++.+..+|.+.++.+.+.|+.+|.++++++
T Consensus 204 ----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 204 ----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred ----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 1222221111 1145555666666666665443322 234566788889999999999999999998775
Q ss_pred c--hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 590 D--SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 590 e--~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
. ..+...+++|+.+. +.+++.-...-|..+. ..+.... .|.+--++.++.+++-++|..+......|.+
T Consensus 275 ~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il------~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 275 TALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKIL------QGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHH------HHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 4 23445666766543 3345544444444332 1121111 3346667778888999999999998888876
Q ss_pred cChhhhhhhhhCCCHHHHHHHh-c------cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHH
Q 000124 667 MRQDICGSLATDEIVNPCMRLL-T------SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL-~------dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~ 739 (2138)
++ +.+. ++..|-+-+ + +++..-|..-..+++..+..+++ ..+.+|+.|++.+.+.++.
T Consensus 347 sr--Nved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--------~aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 347 SR--NVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--------VAATVVSLLLDFISDSNEA 411 (948)
T ss_pred hc--cHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--------HHHHHHHHHHHHhccCCHH
Confidence 31 1111 112222111 1 22334567777888888765554 3456899999999888766
Q ss_pred HHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-hCCCHHHHHHHHHHHHHhhhcC
Q 000124 740 AAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-AEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 740 Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.....+..+.-... .|..|..|+. .++.-+ +-...++.+.|.|.++..|...
T Consensus 412 aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 412 AASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 54444444433322 5666655533 444333 2356788999999999988753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.2 Score=67.65 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhhcCchhHHHHh----hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 408 QERVLEAMASLYGNIFLSQWVS----HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 408 r~~Aa~AL~~L~~n~~~~~~L~----e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
|.+=.+||--|.+--+++.|-. .-|..++.++||+++-.+.+...+..++.+-.-++..+.-+++.+|-..+++.+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4455555655554444444433 347789999999999999999999999886665477777888888888888877
Q ss_pred cC-C--chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000124 484 GL-S--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2138)
Q Consensus 484 ~s-~--d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~Ga 559 (2138)
.. . +++.|-.|+..|..++..-......-.+.+.+..=+..|.++ .+-.|.|.+-+|+.|=.+.++.|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 65 2 457888999999999885444444445556666556667775 6888999999999998877777776667889
Q ss_pred cchhhhccccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 560 I~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
...|+.++.+.-|++|..|..+|+.+..... ...+...+.+ ++..+ ..++.+.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l---~~~~~---------------~~E~~i~--- 702 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDL---DDERT---------------SIEDLII--- 702 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcc---hhhhh---------------hHHHHHH---
Confidence 9999999999999999999999998865310 1111111110 00000 0011111
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r 672 (2138)
.+...++.+++.+++-+|...+-+|..+..++..+.
T Consensus 703 ---~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 703 ---KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred ---hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 123567788888899999888888888877544433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=60.73 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=109.3
Q ss_pred hcCCHHHHHHHHHHHHHhccCc---hhHHHHHh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 000124 94 RSGTPLAKVNVAATLSVLCKDE---DLRLKVLL--GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV 168 (2138)
Q Consensus 94 ks~~~evr~~Aa~~L~~Ls~~e---~~r~~v~~--~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Iv 168 (2138)
.+.+-+.|..++.-|..+.... +....+.. ...+..+...+.+....+...|+.++..++..-. .+ -+.+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~--~~--~~~~- 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG--SH--FEPY- 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG--GG--GHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--Hh--HHHH-
Confidence 3456778888888887765433 22233221 1555677777777667788899999999986311 11 2222
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC--chhHHHHHhCc-HHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD--GYWRATLEAGG-VDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 169 eaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e--~r~~aI~e~GG-I~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
-...+|.|++.+.+++ +.++..|..+|..++.... .+ . ++.+...+.+.++.+|..++..|..+..
T Consensus 92 ~~~~l~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~~~~~--------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSK---KFIREAANNALDAIIESCSYSPK--------ILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--H--------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHCCcHHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3348899999998765 5789999999999998654 22 2 4566667788899999999999999885
Q ss_pred hcCCCcchhhcc----chHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 246 AFGDSIPTVIDS----GAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 246 ~~~e~r~~l~~~----GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
..+.....+... ..++.+...+. +.+.++|..|..++..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHH
Confidence 544222333333 35666666666 78889999999999988664
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.014 Score=71.53 Aligned_cols=138 Identities=20% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCchh--hhhhhhhhcCCce----EEEEEeccccc--cc-ccCCCCceEEEEecCC-CCc---cccccccCCCCCccccc
Q 000124 1994 PPSFH--ERADSLLHCLPGC----LTVTIKRGNNL--KQ-TMGTTNAFCRLTIGNG-PPR---QTKVVSHSISPEWKEGF 2060 (2138)
Q Consensus 1994 ~~~~~--~~~~~~~~~~~g~----l~v~v~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~---~t~~~~~~~~p~w~~~f 2060 (2138)
+|-|| -|+--.++|++|+ |-.+|.++.++ .+ . +|-|-|++++|--- ..+ ||+||+.+-.|.++|.|
T Consensus 345 ~Pkfhye~R~fq~v~~f~dl~d~elel~ivrg~~~pvp~gp-~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~f 423 (523)
T KOG3837|consen 345 APKFHYETRAFQQVAFFEDLKDQELELAIVRGQKNPVPGGP-MHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDF 423 (523)
T ss_pred CCcchhhhhhcchhhhccccchhHhHHHHhhcccCCCCCCc-hhHHhhhcccccccccccccCccceeeCCCCCCcccce
Confidence 56666 4666778999986 55677777666 55 5 88999999998311 122 69999999999999998
Q ss_pred eeeecCCC-CCC---------eEEEEEeecCCC--CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2061 TWAFDVPP-KGQ---------KLHIICKSKNTF--GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2061 ~~~~~~~p-~~~---------~l~~~~~~~~~~--~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
-...--+| .|. -+.+|+..|+.| ...-+|.|.|.|.+.=+.-+|-+.|.|.|. +.-.-++|++.++
T Consensus 424 klni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG--RK~vGGkLevKvR 501 (523)
T KOG3837|consen 424 KLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG--RKAVGGKLEVKVR 501 (523)
T ss_pred eeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc--ccccCCeeEEEEE
Confidence 87776644 333 267999999998 455689999999999999999999999998 6556678888887
Q ss_pred ecCCCC
Q 000124 2129 WSNRIS 2134 (2138)
Q Consensus 2129 w~~~~~ 2134 (2138)
-.+-.+
T Consensus 502 iR~Pi~ 507 (523)
T KOG3837|consen 502 IRQPIG 507 (523)
T ss_pred Eecccc
Confidence 766544
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.09 Score=61.74 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=112.8
Q ss_pred cCCchhhHHHHHHHHHHHhhcC--chhHHHHHh--cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC-hhHHHHHHHcC
Q 000124 484 GLSSEQHQEYAVQLIAILTEQV--DDSKWAITA--AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVESAG 558 (2138)
Q Consensus 484 ~s~d~~Vr~~Aa~aL~nLa~~s--~e~r~~I~~--aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s-d~~r~~I~e~G 558 (2138)
.+.+...|..++.-|..+...+ .+....+.. ...+..+...+.+....+...|+.++..++..- ...... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence 4567788888888888888754 222222221 145556666677767778888888888886521 112222 244
Q ss_pred CcchhhhccccCChhHHHHHHHHHHHHHHhhc--hhh-HHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhc
Q 000124 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--SAT-INQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSA 634 (2138)
Q Consensus 559 aI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--~~a-I~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d~v~~~l~ 634 (2138)
.+|.|++.+.+++..++..|..+|..+..... ... .+.+.....+.++.++..+++.+..+....+ ..........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 67889999999999999999999999987744 445 5667777888889999999998888765433 1111111100
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
-...++.+...+.++++++|+.|-.++..+....++
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 123578888899999999999999999998764333
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=18 Score=50.45 Aligned_cols=467 Identities=13% Similarity=0.101 Sum_probs=230.6
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCC-HHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
|..-+++.+.. ++-.++..++.+..... .-.....+...++++...+ ...--.++-+|+.++...-.....+ .
T Consensus 346 Lls~l~d~dt~-VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~ 419 (1133)
T KOG1943|consen 346 LLSALSDTDTV-VRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--E 419 (1133)
T ss_pred HHHhccCCcch-hhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--H
Confidence 33444555554 88899999999866543 1112234555666655433 5555677788888887532222111 2
Q ss_pred hhHHHHHHHhc--------CCchhhHHHHHHHHHHHhhcCchhHHH-HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH-
Q 000124 474 EGIQLLISLLG--------LSSEQHQEYAVQLIAILTEQVDDSKWA-ITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL- 543 (2138)
Q Consensus 474 ggIp~LV~LL~--------s~d~~Vr~~Aa~aL~nLa~~s~e~r~~-I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL- 543 (2138)
..+|.++.-+. +....+|..|+..++.+++........ +...=.-..|...+-+.+-..|+.|..++...
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 34566665552 224568999999999999854332111 11110111122233455667788777666544
Q ss_pred hcCC------------------------hhHHHHHHH-cCCcchhhhc-----cccCChhHHHHHHHHHHHHHHhh-c--
Q 000124 544 CCHS------------------------EDIRACVES-AGAVPAFLWL-----LKSGGPKGQDASAMALTKLIRAA-D-- 590 (2138)
Q Consensus 544 s~~s------------------------d~~r~~I~e-~GaI~aLv~L-----LkS~~~evq~~Aa~AL~nLs~~~-e-- 590 (2138)
+... ......+++ .|-...+++- +..-++.+++.++++|.+|+... +
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 2100 011222222 2333344421 33467899999999999987652 1
Q ss_pred -hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh----hhc-chHHHHhhhcccch---hhHHHH-hhcCC-CHHHHHHHHH
Q 000124 591 -SATINQLLALLLGDSPSSKAHVIKVLGHVLT----MAL-QEDLVQKGSAANKG---LRSLVQ-VLNSS-NEENQEYAAS 659 (2138)
Q Consensus 591 -~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~----~~~-~~d~v~~~l~~~Ga---I~aLV~-LLks~-s~evre~Aa~ 659 (2138)
....++++......+.+.+.-..-+.+.+.. ..+ -....+..+ +|. ++.+.. ....+ ..-.+.....
T Consensus 580 a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i--~~l~~ii~~~~~~~~~rg~~~lmr~~~~~ 657 (1133)
T KOG1943|consen 580 ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI--AGLLSIIPPICDRYFYRGQGTLMRQATLK 657 (1133)
T ss_pred cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh--hhhhhhccHHHHHHhccchHHHHHHHHHH
Confidence 2456777777666666554443333332221 110 000011111 111 111111 11112 1234445555
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-CH
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SI 738 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-s~ 738 (2138)
.+-++...........+.++--..+...+++.+ .+|..|..++..+.......|.... ...+...+.-+... +.
T Consensus 658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~----~~li~~~ls~~~~~~~~ 732 (1133)
T KOG1943|consen 658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE----APLITRYLSRLTKCSEE 732 (1133)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh----hHHHHHHHHHhcCchHH
Confidence 666665544444444444444344444454444 7888899999988762211111110 01223333333333 44
Q ss_pred HHHHHHHHHHHHhhC---CchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHH
Q 000124 739 DAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLT 814 (2138)
Q Consensus 739 ~Vr~eAl~ALaNLa~---~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~ 814 (2138)
.++.--..++.++-+ +-..++.+ ...+.....++ +++-|...+.++.+.+.... .......-......
T Consensus 733 ~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~---~~~~~~~~~k~~e~ 804 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEARQQNVKALAHVCKTVT---SLLFSESIEKFRET 804 (1133)
T ss_pred HHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHHHHHHHHHHHHHHHHHH---HhhccccHHHHHHH
Confidence 455444455555532 22223333 23333333334 67889999999988887531 00011111345666
Q ss_pred HHHhhcc------CCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHH-hhhcCC---hHHHHHHHHH
Q 000124 815 LVDSLNA------MDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC-CLAEGP---PPLQDKAIEI 884 (2138)
Q Consensus 815 LV~LL~s------~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~-ll~~~~---~~vq~~Aiei 884 (2138)
|++.+++ |+-+.-.+.+|+.++-.+...-...... .+..+.+++. ++...- +.+|+-|..+
T Consensus 805 LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~l---------d~~~i~~~~~~~vqQ~veKIdrlre~a~~~ 875 (1133)
T KOG1943|consen 805 LLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLL---------DEDSINRIIRYFVQQAVEKIDRLRELAASA 875 (1133)
T ss_pred HHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccc---------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777763 3333446788887777665321111111 1222333333 333332 3357777777
Q ss_pred HHHhhcc
Q 000124 885 LSRLCGD 891 (2138)
Q Consensus 885 L~~L~~~ 891 (2138)
+..+.-.
T Consensus 876 ~~qi~~~ 882 (1133)
T KOG1943|consen 876 LNQIVVH 882 (1133)
T ss_pred Hhceeec
Confidence 7776554
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.1 Score=58.38 Aligned_cols=180 Identities=20% Similarity=0.180 Sum_probs=121.3
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhh---------cc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcH
Q 000124 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLL---------KS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVV 173 (2138)
Q Consensus 104 Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL---------~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~I 173 (2138)
|+.+|+.++.+..+...+....++..|+++- .. .+.++...|+++|+|+-.. ++..|+.+++.|+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~----s~~aR~~~~~~~~~ 76 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL----SPSARQIFVDLGLA 76 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC----CHHHHHHHHHcCcH
Confidence 3556777788877777777777777777766 33 5899999999999999983 67889999999999
Q ss_pred HHHHHhhCCCCCC--ChhHHHHHHHHHHHHhcCCC-chhHHHHHhCcHHHHHHhhccC-----------------CHHHH
Q 000124 174 PTLWDQLNPKNKQ--DNVVQGFVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLSSD-----------------NAAAQ 233 (2138)
Q Consensus 174 p~Ll~LL~s~s~e--d~~V~e~Al~aL~nLcs~~e-~r~~aI~e~GGI~~Lv~lL~s~-----------------s~evq 233 (2138)
+.+++.|...... ...+.....+.|.-++.... .+...+-+.+|++.+...|... +....
T Consensus 77 ~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 77 EKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999999876311 34467788888888876544 4444455568888888766541 22345
Q ss_pred HHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhcc--------CCCHhHHHHHHHHHHHHhh
Q 000124 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ--------NNDISVRASAADALEALSS 288 (2138)
Q Consensus 234 ~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s--------~sd~~vr~~Aa~aL~nLs~ 288 (2138)
..++++++|+....+.... -.....++.++.++.+ .........+..+|.|+..
T Consensus 157 ~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl 218 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL 218 (446)
T ss_pred HHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh
Confidence 6778888888743333222 1233445555555431 1223455666666666643
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.034 Score=50.72 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 738 IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 738 ~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
+.+|..|+.+|++++........-.....++.|..++.++++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999986544333335667999999999999999999999999875
|
... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.037 Score=70.05 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=87.5
Q ss_pred CCce----EEEEEeccccc-ccccCCCCceEEEEecCCCC-----cc--ccccccCCCCCccccceeee--cCCCCCCeE
Q 000124 2008 LPGC----LTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPP-----RQ--TKVVSHSISPEWKEGFTWAF--DVPPKGQKL 2073 (2138)
Q Consensus 2008 ~~g~----l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~--t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l 2073 (2138)
-||. .+|.|..|||| -|.-|---|||.+++ -||. || ||--++|-.|-+||+|+|.+ |..|-+=.|
T Consensus 1119 hpgtgehkvtvkvvaandlkwqtsgmFrPFVEV~i-vGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL 1197 (1283)
T KOG1011|consen 1119 HPGTGEHKVTVKVVAANDLKWQTSGMFRPFVEVHI-VGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYEL 1197 (1283)
T ss_pred CCCCCcceEEEEEEecccccchhccccccceEEEE-ecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEE
Confidence 4664 78888999999 455588899999999 6652 23 99999999999999999998 678899999
Q ss_pred EEEEeecCCC--CCcccceEEEEecceeecceecceeecCCC
Q 000124 2074 HIICKSKNTF--GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2074 ~~~~~~~~~~--~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|+-|+|- -| -...+|--.|+|.+|+..|.+.-+|+|-..
T Consensus 1198 ~~~VKDY-CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1198 QFCVKDY-CFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred EEeehhh-eeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence 9999985 34 445789999999999999999999998644
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.18 E-value=8.7 Score=52.55 Aligned_cols=331 Identities=17% Similarity=0.121 Sum_probs=184.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcC
Q 000124 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
++....+.+.++++-.-..|...+...++.. + -.++.+..=++++|+.+|..|++.++.+-.. + + -..
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~--e----l-~~~ 127 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--E----L-LGN 127 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH--H----H-HHH
Confidence 3444446677777777778888887655221 1 2467777788899999999999998887541 1 1 124
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchh----
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA---- 592 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~---- 592 (2138)
.++++.+++.++++.+|+.|+-++.++=. ..+..+.+.|.+..+..++.+.+|.+..+|..+|..+-.....+
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~ 204 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLE 204 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHH
Confidence 68899999999999999999999999853 22455667888888999999999999999999998885431111
Q ss_pred ---hHHHHHHHhcCCC-cchHHHHHHHHHHHHhh-hcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 593 ---TINQLLALLLGDS-PSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 593 ---aI~~Li~LL~~~d-~~V~~~A~~AL~~La~~-~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.++.+.-+..... +-.+... +..|... ...++. ..+....+....++.++++-..++..+..+...
T Consensus 205 ~~~~i~~l~~~~~~~~~~~~~~~~---le~L~~~~~~~~~s------~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~ 275 (757)
T COG5096 205 VILRIPQLDLLSLSVSTEWLLLII---LEVLTERVPTTPDS------AEDFEERLSPPLQHNNAEVLLIAVKVILRLLVF 275 (757)
T ss_pred HHHHhhhccchhhhhhHHHHHHHH---HHHHHccCCCCCCc------HHHHHHhccchhhhCcHHHHHHHHHHHHHHhhh
Confidence 1111110000000 0011111 1111111 111110 011223333344556777777777766666553
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhh---hcCCHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA---KTSSIDAAETA 744 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL---~s~s~~Vr~eA 744 (2138)
-+.+... .-.-++++.++..+ +......++-+..+.- ..+.. .+....++. ...+.-+..+-
T Consensus 276 ~~~~~~~---~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l------~~~~k-----~~~~~~~~f~~~~~~~i~~~lek 340 (757)
T COG5096 276 LPSNNLF---LISSPPLVTLLAKP-ESLIQYVLRRNIQIDL------EVCSK-----LLDKVKKLFLIEYNDDIYIKLEK 340 (757)
T ss_pred hccccHH---HhhccHHHHHHcCC-HHHHHHHHHHhhHHHH------HhhHH-----HHHHHhhhhhhhccchHHHHHHH
Confidence 3332211 12234555555554 3333332222222211 01100 111112221 11223333445
Q ss_pred HHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC--CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 745 VAALANLLSDPDIAAEVLLEDVVSALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 745 l~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
...+..++.....-. .++.++.+..+ -+++.-+.+..+|+.+....+ ..-...+..+++++.
T Consensus 341 ~~~~t~l~~~~n~~~------~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~--------s~~~~~I~~~lel~~ 404 (757)
T COG5096 341 LDQLTRLADDQNLSQ------ILLELIYYIAENHIDAEMVSEAIKALGDLASKAE--------SSVNDCISELLELLE 404 (757)
T ss_pred HHHHhhcCCchhhHH------HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhh--------hhHHHHHHHHHHhcc
Confidence 555555554332222 56667777777 688889999999998887421 111446677777776
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=95.07 E-value=7.6 Score=50.34 Aligned_cols=357 Identities=18% Similarity=0.184 Sum_probs=196.9
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC-h
Q 000124 87 PLFISILRSGTP---LAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD-H 161 (2138)
Q Consensus 87 p~LV~LLks~~~---evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd-~ 161 (2138)
|.+...|.+.++ .....++.+|..+|.+.+.-+.+.- ..+..+...... .+.+.....+.+|..+........ +
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 667777766543 6677889999999988776555542 223333333332 256666777888887765321101 1
Q ss_pred hhHHHHHHcCcHHHHHHhhCCCCCC----ChhHHHHHHHHHHHHhcCCC-chhHHHHHhCcHHHHHHhhc----------
Q 000124 162 VGMKIFVTEGVVPTLWDQLNPKNKQ----DNVVQGFVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLS---------- 226 (2138)
Q Consensus 162 ~gre~IveaG~Ip~Ll~LL~s~s~e----d~~V~e~Al~aL~nLcs~~e-~r~~aI~e~GGI~~Lv~lL~---------- 226 (2138)
.......+...+|.+.++....... +..+...+.+.+..++..-+ ..++.+ +..+..+..
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCc
Confidence 2334555666889888877543211 23455556666666655533 222222 223333222
Q ss_pred cCC--HHHHHHHHHHHHHH-HhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCH
Q 000124 227 SDN--AAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGV 303 (2138)
Q Consensus 227 s~s--~evq~~A~~aL~nL-s~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL 303 (2138)
..+ ...+...+..+..+ +.-+++..-. .....+..++.+..+..+...+..+...+..+..+-+ +...+
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~-------~~~~l 227 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP-------DDDDL 227 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC-------ChhhH
Confidence 001 11223333333333 2223322211 2234777888887666667888888888877776511 01122
Q ss_pred HHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCc--------hhHHHHhhhhcCCCCchhhHHHHHHHHHHH-HHH
Q 000124 304 PVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGM--------PALVVYLGELSQSPRLAAPVADIIGALAYA-LMV 374 (2138)
Q Consensus 304 ~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgi--------s~LI~~L~elL~~~~ss~~~A~~L~aLa~~-l~~ 374 (2138)
+.+++...... ........+..+.+.+.|+..|. ...+..|.+++.+++....+++.++-+... ...
T Consensus 228 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 228 DEFLDSLLQSI----SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred HHHHHHHHhhh----cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHh
Confidence 22222221100 00001114456777777775321 235667777888877777777777776654 222
Q ss_pred hhcCCC------CCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHccCCHH
Q 000124 375 FEQKSG------VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLITMATAD 447 (2138)
Q Consensus 375 l~q~~~------~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~sss~e 447 (2138)
+..... +.++.|. .+.|.|+...+..+++ .|.....+|+.+..+-.-.-...+- ..++.++.-+...+.+
T Consensus 304 l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~ 380 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDAD 380 (415)
T ss_pred cCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 111011 1122221 3446777777776655 7888999999997764422222222 3578888888889999
Q ss_pred HHHHHHHHHHHhhhccc
Q 000124 448 VREYLILSLTKLCRREV 464 (2138)
Q Consensus 448 vq~~Aa~aL~~Ls~~s~ 464 (2138)
++..+..+|..+..+++
T Consensus 381 v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 381 VLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 99999999998887753
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1 Score=58.78 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=157.2
Q ss_pred HHHHhhcCchhHHHHhhhchHHHHHHHH----------ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 414 AMASLYGNIFLSQWVSHAEAKKVLIGLI----------TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 414 AL~~L~~n~~~~~~L~e~~gI~~LV~LL----------~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
+|--+.+++.....+....++..|..+- ...+..+..+|..+|+|....++..+....+.|+.+.++..+
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 3344455556666667777777777665 335688999999999999999999999999999999999999
Q ss_pred cCC-----chhhHHHHHHHHHHHhhcCchhHHHHHhc-CCchHHHHHhhhC-----------------CHHHHHHHHHHH
Q 000124 484 GLS-----SEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG-----------------SQKAREVAAHVL 540 (2138)
Q Consensus 484 ~s~-----d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a-GaIp~LV~LLks~-----------------d~~vre~Aa~aL 540 (2138)
+.. +.++.....+.|--++....+.+..+.+. +++..++..|... +......+..++
T Consensus 84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 84 KNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred HcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 866 67788888888888877667777777655 7777777765310 233456677888
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccc-------c--CChhHHHHHHHHHHHHHHh-------------------hchh
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLK-------S--GGPKGQDASAMALTKLIRA-------------------ADSA 592 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLk-------S--~~~evq~~Aa~AL~nLs~~-------------------~e~~ 592 (2138)
.|++.+...... -.....++.++.++. + .......++..+|.|+--. .+..
T Consensus 164 FNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~ 242 (446)
T PF10165_consen 164 FNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD 242 (446)
T ss_pred HHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence 999775433221 012344555544322 1 1235677888888877211 1123
Q ss_pred hHHHHHHHhcC-----CCcchHHHHHHHHHHHHhhhcchHHHHhh---------------hcc-cchhhHHHHhhcCCCH
Q 000124 593 TINQLLALLLG-----DSPSSKAHVIKVLGHVLTMALQEDLVQKG---------------SAA-NKGLRSLVQVLNSSNE 651 (2138)
Q Consensus 593 aI~~Li~LL~~-----~d~~V~~~A~~AL~~La~~~~~~d~v~~~---------------l~~-~GaI~aLV~LLks~s~ 651 (2138)
.+..|+.+|.. .+........-.|..|.......+..++. ..+ ...-..|+.++.+..+
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~ 322 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP 322 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence 45566666541 11111111222222222221111122222 112 2335679999988889
Q ss_pred HHHHHHHHHHHHHhh
Q 000124 652 ENQEYAASVLADLFS 666 (2138)
Q Consensus 652 evre~Aa~ALanL~s 666 (2138)
.+|..++..|..||.
T Consensus 323 ~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 323 QLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999986
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=65.89 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=129.8
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChh
Q 000124 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573 (2138)
Q Consensus 494 Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~e 573 (2138)
++..|..+++...--|..+.+....++|+++|.+++..+...+...++|+...-...++.+.+.|.+..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34444455554345566677788899999999998888888889999999888888999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHhhch---------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc----hhh
Q 000124 574 GQDASAMALTKLIRAADS---------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK----GLR 640 (2138)
Q Consensus 574 vq~~Aa~AL~nLs~~~e~---------~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G----aI~ 640 (2138)
+|.+..|.|.++....+. -.+..++.+..+.+..++.++...|+++......++..+....+.. ..+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999988755321 2456678888888899999999999999764333222222211111 234
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.|+..++..++-.-+..+-.|.+++..+.+.+..+.++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 45555555555444444556666665455555444433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.26 Score=66.58 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=125.4
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhccch
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
||-|+..+||.+...+ +|.-.+-..+.+ +-++.++..+.+.+|..+.+..+..+ +++.+.-++..|+.++.+-+-
T Consensus 512 GIFPYVLKLLQS~a~E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARE-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred chHHHHHHHhccchHh-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 6779999999998776 555444555565 56788888899988888888777652 357788888999999887555
Q ss_pred hhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHh
Q 000124 466 IWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs 544 (2138)
-+....+.+.+..-...++++ .+-.|+..+-+|+.|=...++.|+.=++.++-..|+.+|.++.+++|..|..+|+.+-
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 556666677777777777775 5778999999999998867888998889999999999999999999999999999986
Q ss_pred cC
Q 000124 545 CH 546 (2138)
Q Consensus 545 ~~ 546 (2138)
..
T Consensus 671 ~~ 672 (1387)
T KOG1517|consen 671 SN 672 (1387)
T ss_pred cc
Confidence 53
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.04 Score=50.31 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 651 ~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
+.+|..|+++|++++...++.... ....+++.|+.+|+|+++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988755554444 5568899999999999999999999999875
|
... |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.078 Score=44.82 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.7
Q ss_pred chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 755 ~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
++.+..+.+.|++++|++++.++++++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 456778889999999999999999999999999999987
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.1 Score=59.29 Aligned_cols=265 Identities=18% Similarity=0.159 Sum_probs=146.2
Q ss_pred hHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 475 GIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 475 gIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
...-|.+.|++. ++.+|..++-.|+-.+..+ .+ ......|-..|...+.-.-+.|.-+++-+.... ...+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS-a~------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt-~~~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS-AN------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT-ANQE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccc-cc------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCc-CcHH-
Confidence 456777777654 5566776666655433311 11 113445556666655555555554444443321 1111
Q ss_pred HHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 554 VESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
++.-++...... -..+++..+..+.-.......++-+-+.+++.+.++-.+..-.-+++ +.. .+
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~a--lAy--------~G 549 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLA--LAY--------VG 549 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHH--HHH--------hc
Confidence 222233333322 23444444443332322223344455555666665544332111111 110 01
Q ss_pred hcccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCC
Q 000124 633 SAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 633 l~~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~ 710 (2138)
-...++++.|.+. .++.++++|..|+.+|.-++..+|+.+ +..+.+|.+ -++.||-.||.||+-.+.+.
T Consensus 550 Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~---------~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 550 TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL---------PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc---------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 1345678888887 566799999999999999988666554 456667765 58999999999999887632
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
+.+. ++..|-.|..+...-||+-|+-+++.+.. ++....+. .+..+.+.+.+.+.+++.-.+
T Consensus 621 ----G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 621 ----GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred ----CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHHHH
Confidence 3332 34444455567778899999999887743 22222221 123445666777776654333
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.34 E-value=19 Score=46.76 Aligned_cols=347 Identities=17% Similarity=0.175 Sum_probs=177.1
Q ss_pred HHHHHccCCH---HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhH---
Q 000124 437 LIGLITMATA---DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSK--- 509 (2138)
Q Consensus 437 LV~LL~sss~---evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r--- 509 (2138)
++..+...+. ...+....+|..+|.+ ++....+.. .-+..+....+. .+.......+..|.++.....+..
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~-~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTS-PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCC-hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 4444444332 4566777888888877 333333321 222333333322 244555666667766654332222
Q ss_pred --HHHHhcCCchHHHHHhhhC-------CHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCCcchhh--------hccccCC
Q 000124 510 --WAITAAGGIPPLVQLLEAG-------SQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFL--------WLLKSGG 571 (2138)
Q Consensus 510 --~~I~~aGaIp~LV~LLks~-------d~~vre~Aa~aL~nLs~~s-d~~r~~I~e~GaI~aLv--------~LLkS~~ 571 (2138)
....+...++.+.+..... ++.+...+..++..+...- .+.+..+. ......+. ..-.+..
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-DELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHccccccCCCCcccccc
Confidence 1112233666666654322 1344455555554444322 22222221 11111111 0001111
Q ss_pred hhHHHHHHHHHHHHHHh--h------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHH
Q 000124 572 PKGQDASAMALTKLIRA--A------DSATINQLLALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSL 642 (2138)
Q Consensus 572 ~evq~~Aa~AL~nLs~~--~------e~~aI~~Li~LL~~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aL 642 (2138)
...+......+..+... + ..+.+..++++... +++..+..++++++.+..--...+.... .+..+
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~------~l~~~ 234 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE------FLDSL 234 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH------HHHHH
Confidence 11222222222222222 1 12355666666553 4466777788888877654222222211 23434
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc------cc
Q 000124 643 VQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK------TT 715 (2138)
Q Consensus 643 V~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~------d~ 715 (2138)
..-. .......+..+..++..++.+ --.|..-.....+..|+.++.+ +.+...|++++.-+....+.. ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 235 LQSISSSEDSELRPQALEILIWITKA-LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HhhhcccCCcchhHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 3333 233444455555555444431 1111111112345667777777 667788999998887631110 01
Q ss_pred ----hhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHH-HhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 716 ----NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEV-LLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 716 ----~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~I-i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
.|+++. ..+++.|++..+..+.+.+..-+.||.++..+-...... .-+..+|.+++.+.-.+++++..+..+|.
T Consensus 312 vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 312 VKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred hhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 122222 236778888888877778888999999998743321111 12447888999999899999999999999
Q ss_pred HhhhcC
Q 000124 791 QLLKHF 796 (2138)
Q Consensus 791 nL~~~~ 796 (2138)
.+..+.
T Consensus 391 ~~l~~~ 396 (415)
T PF12460_consen 391 MILEEA 396 (415)
T ss_pred HHHHcC
Confidence 999875
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.11 E-value=11 Score=47.47 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=141.4
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH--HH-HhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW--AI-TAAGGIPPLVQLLEAG--SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~--~I-~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs 544 (2138)
+...+.+..|+..+..-+.+.|+.++.+..++-....+.+. .+ .-..--|.++..|-.+ ++++--.+-..|+...
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 34456788899999888999999999999999886555543 11 1122324444444433 6777777778888887
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVI 613 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~~d~~V~~~A~ 613 (2138)
. .+...+.+.....+-.+++....++-++...|-.++..+..... ........+|+.+++.-.+.++.
T Consensus 152 k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 152 K-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp T-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 6 46666677778888889999999999999999888887654311 23456788899999999999999
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
.-|+.+.....+-....+-+.....+..+..++++.+..+|..|..++.-...
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 99999886666655555666777789999999999999999999998876665
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.19 Score=52.15 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh--hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE--AGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk--s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~G 558 (2138)
.|...+.+|+||+..+......+.+.|++|.++.... ..+|-+|+||..+++||+..+.++++.+.+-.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 3667889999999988999999999999999998764 44899999999999999999999999887543
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.073 Score=71.45 Aligned_cols=102 Identities=13% Similarity=0.267 Sum_probs=86.4
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
..|.|.+|-+| .|-+|..|||+.|.+||.... ++.-+.+++||+..+-|.+-+-.| ..-+|.|+|.++|.++ -+.
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeecccccch
Confidence 77999999999 677799999999999776655 599999999999999999999987 8889999999999995 788
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLE 2124 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 2124 (2138)
+|--+|.|. |-.|+.-++ ++|..++..
T Consensus 694 iget~iDLE--------nR~~T~~~a--~cglaq~y~ 720 (1105)
T KOG1326|consen 694 IGETTIDLE--------NRWLTRHRA--RCGLAQTYC 720 (1105)
T ss_pred hhceehhhh--------hcccCcCCc--ccCccceee
Confidence 898887764 345666666 777777665
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.16 Score=52.84 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc--CCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 449 q~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+...+..+++++.+++.++..+.+.||+|.++.... ..+|-+|+.|+.+++||+..+++++..+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 556778999999999999999999999999998774 557889999999999999988888876654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.26 Score=53.76 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=79.8
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccc-----cccccCCCCCccccceeeecCCC--CC-----CeEEEEEee
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQT-----KVVSHSISPEWKEGFTWAFDVPP--KG-----QKLHIICKS 2079 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-----~~~~~~~~p~w~~~f~~~~~~~p--~~-----~~l~~~~~~ 2079 (2138)
+.|+|++.+++-.. +-.+.+..++|+.+++ ++..++-.=.|||+|.+.+--.- .+ -.+++.|..
T Consensus 9 ~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 9 FDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 67899999988773 6777777878888632 23334445589999998764321 21 246677777
Q ss_pred cCCCCCc-ccceEEEEecceeec--ceecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2080 KNTFGKS-TLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2080 ~~~~~k~-~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
...-|+. .+|++.|+|++.+.. +.....|.|.+. +++ .-+|.|.++...-.+
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~-~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKS-NATLSISISLSELRE 139 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCC-CcEEEEEEEEEECcc
Confidence 6545554 999999999999995 689999999988 222 233556666555433
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.3 Score=59.14 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh------ch-----hhHHHH
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------DS-----ATINQL 597 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~------e~-----~aI~~L 597 (2138)
....|..|.+.|..|+..-+.--.+ ...+|-++.++.+..+++|..|..+|..+...- +. =..|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 5677888889998887643221111 346888899999999999999999998876441 11 145778
Q ss_pred HHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcc-----------------cch-------h-hHHHHhhcCCCH
Q 000124 598 LALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA-----------------NKG-------L-RSLVQVLNSSNE 651 (2138)
Q Consensus 598 i~LL~~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~-----------------~Ga-------I-~aLV~LLks~s~ 651 (2138)
-.|+.+ ....++..-+.+|+.|+..+..--.....+.. ... + +..+.++..+.+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 888888 55566766677777775432210000000000 001 1 222235555566
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHh
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~ 731 (2138)
-+|..-...+.-||..-. +.-.+.=++..|+.+|.|.+...|..--..+.-++. .. +.| -.+...+|.|..
T Consensus 593 ~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~V--G~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--FV--GWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhhccceEE--EE--eee--eHHHHHHHHHHH
Confidence 788877777777765311 011123367899999999988887644333333322 11 222 134556777777
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 732 LAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 732 LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
-|.++.+.|...|+.+|..|....-.++..+. +.+.....+|-..+.=+|+.++..+......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 88899999999999999998865444443221 2334444566677888999999988877654
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.97 Score=61.25 Aligned_cols=165 Identities=22% Similarity=0.230 Sum_probs=115.6
Q ss_pred cccCChhH-HHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH
Q 000124 567 LKSGGPKG-QDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2138)
Q Consensus 567 LkS~~~ev-q~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~ 644 (2138)
+.+.+... ....-.++..++...+ ....+.+++.....+.+++....-.+-..+...+ +... + ++..+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~l--L----avNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELAL--L----AVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHH--H----HHHHHHh
Confidence 34444433 3344455666665544 3345667777777777877766555554433222 1111 1 4677777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcC
Q 000124 645 VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2138)
Q Consensus 645 LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G 724 (2138)
=++++++.+|-.|.+.+..|-. ++. -..+++++.+++.++++.||+.|+-|+.++-+- .+....+.|
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~--~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l------d~~l~~~~g 166 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV--KEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL------DKDLYHELG 166 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh--HHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc------CHhhhhccc
Confidence 7888999999999999887754 222 234678999999999999999999999999762 223456778
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
.+..+..++.+.++.|..+|+.+|..+-
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 8999999999999999999999998874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.4 Score=58.94 Aligned_cols=290 Identities=16% Similarity=0.092 Sum_probs=175.3
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC---chhHH
Q 000124 435 KVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV---DDSKW 510 (2138)
Q Consensus 435 ~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s---~e~r~ 510 (2138)
.++...++. ...+.+..|...|..++....+ -.. -...+|-++.++.++...||..|+..|+.+.... +..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333333333 4567788899999988875321 111 2456899999999999999999999998875422 22333
Q ss_pred HHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHH---HHHHHcCCcchhhhcccc-CChhHHHH-HHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIR---ACVESAGAVPAFLWLLKS-GGPKGQDA-SAMALTK 584 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r---~~I~e~GaI~aLv~LLkS-~~~evq~~-Aa~AL~n 584 (2138)
.+.-+=.+|.|-.++.+ ....+|..-|..|..|+......- ..+...|..... .+ +.++.+.. -..+|..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~----nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDP----NSETAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCc----ccccccccccchHHHHHHH
Confidence 44455567888888887 456667777777777765221111 111112211111 11 11111111 1111111
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
. +-.....|+.+.++.|+....+.+.-|...-.... ...=.++.|+.+|++.++..|-.=..-+..+
T Consensus 578 ~-------V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLNDkDw~LR~aFfdsI~gv 644 (1431)
T KOG1240|consen 578 T-------VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLNDKDWRLRGAFFDSIVGV 644 (1431)
T ss_pred H-------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhcCccHHHHHHHHhhccce
Confidence 1 12335667778888888888888887765411110 0111378899999999888876444444433
Q ss_pred hhcChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 665 FSMRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 665 ~s~~~e~r~~I-ve~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
+.. .+.. +++..+|-|.+-|.|+.+.|...|.++|.-|..... .+ ...-..+++...-+|..++..+|..
T Consensus 645 si~----VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l----l~-K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 645 SIF----VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL----LR-KPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred EEE----EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc----cc-hHHHHHHHHhhhhheeCchHHHHHH
Confidence 321 1111 456778888889999999999999999998886211 11 1112234555566777899999999
Q ss_pred HHHHHHHhhC
Q 000124 744 AVAALANLLS 753 (2138)
Q Consensus 744 Al~ALaNLa~ 753 (2138)
++..+...+.
T Consensus 716 ~~~iI~~~~~ 725 (1431)
T KOG1240|consen 716 VLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHh
Confidence 9998887653
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.18 Score=42.57 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=35.5
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
++++..+.+.|++++|++++.++++.++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.55 Score=59.88 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=133.7
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~AL 703 (2138)
.+....+.++.+....+.|++++..++..+.-.+...++|+..--...+....+.+++..|+.++.+.++..+....|.+
T Consensus 418 rSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvl 497 (743)
T COG5369 418 RSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVL 497 (743)
T ss_pred HHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhh
Confidence 33445666778888899999999876666677778888888765556677788899999999999999999999999999
Q ss_pred HHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchH----HHHHH---hcC-cHHHHHHHHh
Q 000124 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDI----AAEVL---LED-VVSALTRVLA 775 (2138)
Q Consensus 704 anLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~----r~~Ii---~~g-~L~~LV~LL~ 775 (2138)
+++...... ..+......-++..++++-++++..|+.+....|.|+.++..- ..... ... ....|...+.
T Consensus 498 rHlmyncq~--~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e 575 (743)
T COG5369 498 RHLMYNCQK--NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE 575 (743)
T ss_pred hhhhhcCcc--hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH
Confidence 999874433 4555667777889999999999999999999999999874322 11111 111 3556777788
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhh
Q 000124 776 EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2138)
Q Consensus 776 ~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~ 808 (2138)
+.+|..-...+..|.+++... +.....+.+
T Consensus 576 ~~np~~i~~~~yilv~~aa~d---~~l~~~V~~ 605 (743)
T COG5369 576 ENNPMEILEGCYILVRNAACD---DTLDYIVQS 605 (743)
T ss_pred hcCchhhhhhHHHHHHHHhcc---chHHHHHHh
Confidence 888876666677777777653 344444444
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.3 Score=53.74 Aligned_cols=220 Identities=20% Similarity=0.131 Sum_probs=130.2
Q ss_pred hhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc--CChhHHHHHHHHHHHHHHhhc--------hhhHH
Q 000124 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAAD--------SATIN 595 (2138)
Q Consensus 526 ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS--~~~evq~~Aa~AL~nLs~~~e--------~~aI~ 595 (2138)
+.-++-++--|..+|.++....+.......+...-..++++++. +..++|++..-.++-++..+. .+.+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33355567778888888877544333333444455677777765 557899999999998886643 23445
Q ss_pred HHHHHhcCCCcchHHHHHH-HHHHHHhhh--cchHHHHhhhcccchhhHHHHhhc-CC--CHHHHHHHHHHHHHH-----
Q 000124 596 QLLALLLGDSPSSKAHVIK-VLGHVLTMA--LQEDLVQKGSAANKGLRSLVQVLN-SS--NEENQEYAASVLADL----- 664 (2138)
Q Consensus 596 ~Li~LL~~~d~~V~~~A~~-AL~~La~~~--~~~d~v~~~l~~~GaI~aLV~LLk-s~--s~evre~Aa~ALanL----- 664 (2138)
-|+++.+.. .++.+.+ |++.++... .+++.+...+..++ +.+-++.+. .+ +++.+...-..=..|
T Consensus 239 dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 239 DLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 566666543 2333222 344444332 33344444433333 344444443 32 455443322211111
Q ss_pred --hh----------c----Ch---------hhhhhhhhC--CCHHHHHHHhccCCHH-HHHHHHHHHHHhcCCCCcccch
Q 000124 665 --FS----------M----RQ---------DICGSLATD--EIVNPCMRLLTSNTQM-VATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 665 --~s----------~----~~---------e~r~~Ive~--GaV~~Lv~LL~dgs~~-Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
|. + +| .+...+.+. .+++.|.++++.+++. .-.-|+.-+..+.+..| +.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~ 391 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---EI 391 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---hH
Confidence 11 1 11 122223333 4678889999887775 33446666677766545 46
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+..+.+.|+=..+++++++++++|+-+|+.|+..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 677888999999999999999999999999998664
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.3 Score=55.10 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=162.1
Q ss_pred CCchHHHHHhhhC-CHHHHHHHHHHHHH--HhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hch
Q 000124 516 GGIPPLVQLLEAG-SQKAREVAAHVLWI--LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-ADS 591 (2138)
Q Consensus 516 GaIp~LV~LLks~-d~~vre~Aa~aL~n--Ls~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e~ 591 (2138)
+.+..|.+.|++. ++.++.-++-.|+- ++..+.++ ...+-+++..++.-.-+.|.-+.+-+.-. ...
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~ei---------Ye~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ 483 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEI---------YEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ 483 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHH---------HHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH
Confidence 4667888888877 56667766655544 33333222 22344556666655556666665544322 234
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHH-HhhcCCCHHHHHHHHHH--HHHHhhcC
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV-QVLNSSNEENQEYAASV--LADLFSMR 668 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV-~LLks~s~evre~Aa~A--LanL~s~~ 668 (2138)
+++..+........ .+...+.|+.=... . .....+.-..++ +++.+.++-.|...+-. ++....+
T Consensus 484 eaiedm~~Ya~ETQ---Heki~RGl~vGiaL---~-----~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg- 551 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQ---HEKIIRGLAVGIAL---V-----VYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG- 551 (929)
T ss_pred HHHHHHHHHhhhhh---HHHHHHHHHHhHHH---H-----HhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence 55555555544332 23333444321111 0 011122334444 46667788788765543 3333332
Q ss_pred hhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-cCCHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDAAETAVA 746 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~L-L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~ 746 (2138)
+.++|..|+.. .+|.+++||+.|.-||+-+....++ ..+..+.+|. +.++.||--++.
T Consensus 552 --------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------------~~~s~V~lLses~N~HVRyGaA~ 611 (929)
T KOG2062|consen 552 --------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------------QLPSTVSLLSESYNPHVRYGAAM 611 (929)
T ss_pred --------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------------hchHHHHHHhhhcChhhhhhHHH
Confidence 24567777777 5788999999999999988763332 4555666665 578999999999
Q ss_pred HHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCc
Q 000124 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2138)
Q Consensus 747 ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~ 826 (2138)
+|+.-+.....+. ++..|..+..+...-||+.|.-+++-+...+. +...- .-.+....+.....+.+++.
T Consensus 612 ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t--~~~~p--kv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 612 ALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT--EQLCP--KVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc--cccCc--hHHHHHHHHHHHhhhhhhHH
Confidence 9998876555443 44557777788888999999999988765432 11110 11345556666666666666
Q ss_pred hhHHHHHHHHHHHh
Q 000124 827 TDVADALEVVALLA 840 (2138)
Q Consensus 827 ~~~~~AL~ALa~La 840 (2138)
-.+.-|.-+-|.+-
T Consensus 682 ~aK~GAilAqGild 695 (929)
T KOG2062|consen 682 MAKFGAILAQGILD 695 (929)
T ss_pred HHHHHHHHHhhhhh
Confidence 56666655555543
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.6 Score=58.67 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=135.8
Q ss_pred HHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHH-HhccCchhHHHHHhcCChHHHHHhhccC-CHHHHHHHHHHHHHhh
Q 000124 76 RLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSE-STDTRKAAAEALYEVS 153 (2138)
Q Consensus 76 k~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~-~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se-d~eVr~aAa~AL~nLS 153 (2138)
+...++ .||...|+.+...+.+..+.....+|. .+.-.... ....++++.+.+... .-.-.-.++.++.||+
T Consensus 497 ~~~~Ik-~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIK-PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCcccc-ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 334444 699999999999998998888888886 22211100 013345555555432 2222346778888888
Q ss_pred cCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-hCcHHHHHHhhccCCHHH
Q 000124 154 SGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAA 232 (2138)
Q Consensus 154 ~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-~GGI~~Lv~lL~s~s~ev 232 (2138)
+. +...|+.+.++-+++.+-+.+...+ +.++..++..+.||..++.-..+.+.+ ..+.+....++....+..
T Consensus 571 s~----s~s~r~~i~ke~~~~~ie~~~~ee~---~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~ 643 (748)
T KOG4151|consen 571 SI----SESDRQKILKEKALGKIEELMTEEN---PALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKF 643 (748)
T ss_pred Cc----chhhHHHHHHHhcchhhHHHhhccc---HHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHH
Confidence 63 5566777888888887666655443 568899999999999988766666776 567888888888877778
Q ss_pred HHHHHHHHHHHHhhcCCCcch-hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 233 QSNAASLLARLMLAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 233 q~~A~~aL~nLs~~~~e~r~~-l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
..++++++..+.......+.. .........+..++. +.+..++........|+...
T Consensus 644 ~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 644 ELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred hhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHH
Confidence 888888888777555555553 223345566666666 45668888888887775443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=92.39 E-value=4 Score=50.80 Aligned_cols=188 Identities=22% Similarity=0.248 Sum_probs=105.3
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc--ChhhhhhhhhC
Q 000124 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM--RQDICGSLATD 678 (2138)
Q Consensus 601 L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~--~~e~r~~Ive~ 678 (2138)
+.+.....++.+.+.+..++......+.+... ....+..+...++.++.+-+..|++++.-++-. ..+....+.+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~--~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~- 128 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDR--RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE- 128 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-
Confidence 33333444555555554444332233333222 122467777788888776677777777766553 2233344333
Q ss_pred CCHHHHHHHhccCCH--HHHHHHHHHHHHhcC-CCCcccchhhhHHhcCChhhH--Hhhhh----------cCCHHHHHH
Q 000124 679 EIVNPCMRLLTSNTQ--MVATQSARALGALSR-PTKTKTTNKMSYIAEGDVKPL--IKLAK----------TSSIDAAET 743 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~--~Vk~~AA~ALanLa~-s~~~~d~~r~~I~~~G~V~~L--v~LL~----------s~s~~Vr~e 743 (2138)
...+.|.+.+.+++. ..|..++.||+-++. .....+.....+ ..+..+ ....+ .+++.+...
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 466788888888764 456677777776654 111100111000 011100 00111 123567788
Q ss_pred HHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 744 AVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 744 Al~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
|+.+-+.|.. -|...-.-.-...+|.|+.+|.+.+..||..|.++|+=|..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888877765 23322222234579999999999999999999999986654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.09 E-value=7.7 Score=47.44 Aligned_cols=265 Identities=10% Similarity=0.056 Sum_probs=146.0
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh-hchHHHHHHHHcc--CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH-AEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e-~~gI~~LV~LL~s--ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
++|.+++..-+. ..+..|++++.++.-.++-+..++. ..+-..++.+++. +..+.|.+..-++..++.+ +....-
T Consensus 152 eyLgkl~Q~i~~-lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDF-LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQD 229 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHH
Confidence 455555544433 3788888999998777766655443 3455667777765 4578888988888888887 333332
Q ss_pred hhh-chhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHH
Q 000124 470 IGK-REGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL 543 (2138)
Q Consensus 470 I~e-~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nL 543 (2138)
|-+ ..-+..|+++.+.. .+.+-+-++.++.|++...+ +.-..+...|-+.+-++.|... |.+++...-..=..|
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 221 23466677777643 45577778888888886322 3333344455555666666433 555544332222222
Q ss_pred hcCChhHHHHHHHcCCcchh-hhccccCChhHHH-HHHHHHHHHHHhhchhhHHHHHHHhcCCCcch-HHHHHHHHHHHH
Q 000124 544 CCHSEDIRACVESAGAVPAF-LWLLKSGGPKGQD-ASAMALTKLIRAADSATINQLLALLLGDSPSS-KAHVIKVLGHVL 620 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aL-v~LLkS~~~evq~-~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V-~~~A~~AL~~La 620 (2138)
........- -+ .-+.-| -.++....+.... .--.-+ .....++..++..|.++++.+.+++ -..|++=++.+.
T Consensus 310 ~~~~k~l~~--fD-~Y~~ELdsg~l~wSp~H~~~dFWs~N~-d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V 385 (432)
T COG5231 310 VQNTKKLCI--FD-NYLNELDSGRLEWSPYHHKKDFWSTNL-DMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLV 385 (432)
T ss_pred HhhhhhhhH--HH-HHHHHHhhCcccCCCcccccCchhhhH-HHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHH
Confidence 111110000 00 000001 0122221111110 000111 1122234567889999999888773 222344444443
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
... ++. ...+.+.|+=..+..+++++++++|-.|..++-.+.+
T Consensus 386 r~~--PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 386 RAS--PEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhC--chH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 322 222 2335678888899999999999999999998876654
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.05 E-value=73 Score=45.06 Aligned_cols=249 Identities=18% Similarity=0.185 Sum_probs=136.7
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 000124 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGT-PLAKVNVAATLSV 110 (2138)
Q Consensus 32 ed~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~-~evr~~Aa~~L~~ 110 (2138)
|.++.+...+.++++.+++ .+...|=.|++-+..+....+ +.++- ..|...++++.-.+ +..=-.+|-+|..
T Consensus 334 dv~eivE~vie~Lls~l~d--~dt~VrWSaAKg~grvt~rlp--~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSD--TDTVVRWSAAKGLGRVTSRLP--PELAD---QVIGSVIDLFNPAEDDSAWHGACLALAE 406 (1133)
T ss_pred ccHHHHHHHHHHHHHhccC--CcchhhHHHHHHHHHHHccCc--HHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHH
Confidence 3344444444555555544 444557778888888876654 34443 35677777665544 4555577888888
Q ss_pred hccC----chhHHHHHhcCChHHHHHhhccC--------CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH-
Q 000124 111 LCKD----EDLRLKVLLGGCIPPLLSLLKSE--------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW- 177 (2138)
Q Consensus 111 Ls~~----e~~r~~v~~~G~Ip~Lv~LL~se--------d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll- 177 (2138)
|+.. ++... ..+|.+++-|..+ ...+|.+|+-.+|.++..-. +...+.+.+ ...+.|+
T Consensus 407 LA~rGlLlps~l~-----dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays---~~~l~p~l~-~L~s~LL~ 477 (1133)
T KOG1943|consen 407 LALRGLLLPSLLE-----DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS---PSDLKPVLQ-SLASALLI 477 (1133)
T ss_pred HHhcCCcchHHHH-----HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC---hhhhhHHHH-HHHHHHHH
Confidence 8643 11112 3356666666442 35689999999999997422 211222222 1222222
Q ss_pred HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhcc
Q 000124 178 DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2138)
Q Consensus 178 ~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~ 257 (2138)
..+-+. +-.++..|..++-...+...+. .-|++.+. ..+..+-..+.+|-.-++.-....+..+..
T Consensus 478 ~AlFDr---evncRRAAsAAlqE~VGR~~n~------p~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~---- 543 (1133)
T KOG1943|consen 478 VALFDR---EVNCRRAASAALQENVGRQGNF------PHGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREP---- 543 (1133)
T ss_pred HHhcCc---hhhHhHHHHHHHHHHhccCCCC------CCchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHH----
Confidence 223222 2347778888888777653221 12555433 222222334555544444333233322222
Q ss_pred chHHHHHHH-hccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchh
Q 000124 258 GAVKALVQL-VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316 (2138)
Q Consensus 258 GaL~~LL~L-L~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e 316 (2138)
.+..++.. +. .-+..+|+.++.+|.+|+.. +.....+..++.|++....++..
T Consensus 544 -~f~~L~t~Kv~-HWd~~irelaa~aL~~Ls~~----~pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 544 -VFNHLLTKKVC-HWDVKIRELAAYALHKLSLT----EPKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred -HHHHHHhcccc-cccHHHHHHHHHHHHHHHHh----hHHhhcccchhhhhhhhcCCChH
Confidence 22233222 22 25789999999999998775 23344467788888877665543
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.84 E-value=63 Score=43.93 Aligned_cols=363 Identities=18% Similarity=0.185 Sum_probs=189.2
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCc
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~ 172 (2138)
|++++.-+|-..++.|+.|- +.-.....+|.+..+|.+.+..||+.|.-++..+.... + .++. +
T Consensus 108 LQHPNEyiRG~TLRFLckLk------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~---~-----~L~p-D- 171 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLK------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---E-----HLIP-D- 171 (948)
T ss_pred ccCchHhhcchhhhhhhhcC------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---h-----hhcC-C-
Confidence 44566677888888887772 22233466788899999999999999999998888631 1 1111 1
Q ss_pred HHHHH-HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC---CHHHHHHHHHHHHHHHhhcC
Q 000124 173 VPTLW-DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD---NAAAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 173 Ip~Ll-~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~---s~evq~~A~~aL~nLs~~~~ 248 (2138)
.|.|+ +.|... .|+....+|.-.|. ..++.+ ++..+.....+- ++..+...+..+...|..++
T Consensus 172 apeLi~~fL~~e--~DpsCkRNAFi~L~---~~D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 172 APELIESFLLTE--QDPSCKRNAFLMLF---TTDPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hHHHHHHHHHhc--cCchhHHHHHHHHH---hcCHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 23333 333332 24445555544444 334444 556665555443 36778888888888775433
Q ss_pred CCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHH
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQG 328 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe 328 (2138)
. .....+..+..+|.+. +..++-.|++.|..++.. +..-+.-. ..+++++.+.+..
T Consensus 239 ~-----~~~~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~-p~alk~Aa-----~~~i~l~~kesdn------------ 294 (948)
T KOG1058|consen 239 A-----EKARYIRCIYNLLSST-SSAVIFEAAGTLVTLSND-PTALKAAA-----STYIDLLVKESDN------------ 294 (948)
T ss_pred H-----HhhHHHHHHHHHHhcC-CchhhhhhcceEEEccCC-HHHHHHHH-----HHHHHHHHhccCc------------
Confidence 2 3445788888888854 568888888888888885 33322211 3344444332211
Q ss_pred HHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHH
Q 000124 329 HATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQ 408 (2138)
Q Consensus 329 ~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr 408 (2138)
+......+-+.++... ....+ .+-+ --...++.+++-+ ++
T Consensus 295 ---------------------------nvklIvldrl~~l~~~----------~~~il-~~l~-mDvLrvLss~dld-vr 334 (948)
T KOG1058|consen 295 ---------------------------NVKLIVLDRLSELKAL----------HEKIL-QGLI-MDVLRVLSSPDLD-VR 334 (948)
T ss_pred ---------------------------chhhhhHHHHHHHhhh----------hHHHH-HHHH-HHHHHHcCccccc-HH
Confidence 0000001111111100 00000 1011 1112344455444 55
Q ss_pred HHHHHHHHHhhcCc---hh----HHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH
Q 000124 409 ERVLEAMASLYGNI---FL----SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2138)
Q Consensus 409 ~~Aa~AL~~L~~n~---~~----~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~ 481 (2138)
..+......|...- ++ ++.+.+.... =...+...++..+.++...+.+-++.. ...|+.|++
T Consensus 335 ~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~------e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~ 403 (948)
T KOG1058|consen 335 SKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE------ESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLD 403 (948)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc------ccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHH
Confidence 55544433332111 11 1111110000 001123345666677777666655543 345789999
Q ss_pred HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHH----HH
Q 000124 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACV----ES 556 (2138)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I----~e 556 (2138)
.+.+.|+..-...+..+...-...+.-|..+ +..|++-+.. .+.++-+.++|+++.-+....+.+..+ ..
T Consensus 404 fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~s 478 (948)
T KOG1058|consen 404 FISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQS 478 (948)
T ss_pred HhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9988887665555555554444334444333 4444444432 366777888888888876555444421 22
Q ss_pred cCCcchhh
Q 000124 557 AGAVPAFL 564 (2138)
Q Consensus 557 ~GaI~aLv 564 (2138)
-|-+|.+.
T Consensus 479 lGEvp~~~ 486 (948)
T KOG1058|consen 479 LGEVPIVC 486 (948)
T ss_pred ccccceeh
Confidence 46666553
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.49 Score=48.90 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHH--hcCcHHHHHHH
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRV 773 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii--~~g~L~~LV~L 773 (2138)
|..+..+|+.++.+.+. . ..-.-..++++++..+.+.+..||..|+++|.|++.. .+..+. -......|.++
T Consensus 3 R~ggli~Laa~ai~l~~--~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK--D--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchH--h--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 44556666666553332 1 2223345899999999999999999999999999742 223332 34577888889
Q ss_pred HhCCCHHHHHHHHHHHHHhhh
Q 000124 774 LAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 774 L~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
+.+.++.||..| +.|-++..
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HcCCchhHHHHH-HHHHHHhc
Confidence 999999988776 66666543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=91 Score=44.58 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=137.6
Q ss_pred ccCChhHHHHHHHHHHHHHHhhc-----hhhH----HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 568 KSGGPKGQDASAMALTKLIRAAD-----SATI----NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 568 kS~~~evq~~Aa~AL~nLs~~~e-----~~aI----~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
++.++.+|..+-..|..++..+. ..-+ +.|..-+++.+...+...+.||..+....+ .+...-. ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i---~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI---PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH---HHH
Confidence 44578899999999999987632 1122 333444444455566667778877765433 1211110 113
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC------CCHHHHHHHhccC--CHHHHHHH--HHHHHHhcC
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD------EIVNPCMRLLTSN--TQMVATQS--ARALGALSR 708 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~------GaV~~Lv~LL~dg--s~~Vk~~A--A~ALanLa~ 708 (2138)
|+-++-.++..+...|+.|...|..|+. .....+. ..+..++..+..| .+..+..| .-++..+..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 4445555577789999999999999883 1111122 2667777777665 33333333 344555443
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHH
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~ 787 (2138)
... +.-....-.+.+..+...|.+.+.+++..|+..+..+.. .|+..-.--.+..++.+..+.++..-.+|.+.-.
T Consensus 815 e~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 815 EFK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 110 111111223455556666788999999999999999876 6776555555668899999999999999999999
Q ss_pred HHHHhhhcCC
Q 000124 788 ALHQLLKHFP 797 (2138)
Q Consensus 788 AL~nL~~~~~ 797 (2138)
.+-.|+..+.
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 9999998754
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.07 Score=64.44 Aligned_cols=88 Identities=19% Similarity=0.376 Sum_probs=69.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCcccc--ceeeecCCCCCCeEEEEEeecCCC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEG--FTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~--f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
+-+|+.+|++| .+..|-.|||+++.+..|-.| +||+...++||.|+|+ +.|+.+++-....+.+.|-+++.|
T Consensus 95 ~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~ 174 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKK 174 (362)
T ss_pred cceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCccc
Confidence 45689999998 788899999999999999988 4789999999999987 556777774444567777788777
Q ss_pred -CCcccceEEEEeccee
Q 000124 2084 -GKSTLGKVTIQIDKVV 2099 (2138)
Q Consensus 2084 -~k~~~g~~~~~~~~v~ 2099 (2138)
..++.|.-.+++-|.=
T Consensus 175 ~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 175 THNESQGQSRVSLKKLK 191 (362)
T ss_pred ccccCcccchhhhhccC
Confidence 4577777665555543
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.1 Score=48.02 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=96.0
Q ss_pred HhhhchhHHHHHHHhcCCch------hhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHH
Q 000124 469 AIGKREGIQLLISLLGLSSE------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~------~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL 540 (2138)
..+..+|+..|+++++++.. .+...++.++..|-.| ....|.......+...+...... +..+...|...|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45578999999999988763 5777888999998885 34456666777888888888755 688999999999
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHH
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
-++..++......+.++=.++.|+..++.+++++|.++...+-.|.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988887888888888999999999999999998887665554
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.46 Score=61.52 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=59.3
Q ss_pred ccccCCCCceEEEEecCCCCc-----cccccccCCCCCccccceeeecC---CCCCCeEEEEEeecCCCCC-cccceEEE
Q 000124 2023 KQTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAFDV---PPKGQKLHIICKSKNTFGK-STLGKVTI 2093 (2138)
Q Consensus 2023 ~~~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~~~---~p~~~~l~~~~~~~~~~~k-~~~g~~~~ 2093 (2138)
++..++.|||-...-..|+.+ +|.|++++++|+|.... -.+.. +--+-.+.|+|++.++.|| +.+|++.-
T Consensus 151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~t 229 (529)
T KOG1327|consen 151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQT 229 (529)
T ss_pred ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecc
Confidence 667789999999988655555 59999999999998632 11111 1012456799999999999 99999998
Q ss_pred Eecceeecc
Q 000124 2094 QIDKVVTEG 2102 (2138)
Q Consensus 2094 ~~~~v~~~~ 2102 (2138)
++.++-..|
T Consensus 230 t~~~~~~~~ 238 (529)
T KOG1327|consen 230 TLSELQEPG 238 (529)
T ss_pred cHHHhcccC
Confidence 888775433
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.2 Score=50.14 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh-cCCHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHHHh
Q 000124 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR-SGTPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLLSL 133 (2138)
Q Consensus 56 ~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk-s~~~evr~~Aa~~L-~~Ls~~e~~r~~v~~~G~Ip~Lv~L 133 (2138)
.....|++.|.-+|.-++..|..+.+ ..++..++.+|. ...+.++..++.+| +.|..++.+...+-..+|+..++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566889999999999999999998 789999999994 46788999999999 5566788899999999999999999
Q ss_pred hccC--CHHHHHHHHHHHHHhhc
Q 000124 134 LKSE--STDTRKAAAEALYEVSS 154 (2138)
Q Consensus 134 L~se--d~eVr~aAa~AL~nLS~ 154 (2138)
+++. +.++|-++...|+-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 9983 88899999999877665
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.66 Score=56.45 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCchhhhhhhhhhcCC----ceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceee
Q 000124 1994 PPSFHERADSLLHCLP----GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA 2063 (2138)
Q Consensus 1994 ~~~~~~~~~~~~~~~~----g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~ 2063 (2138)
-+.|-||...+.+--| +-|-||++|--+| -+++|-.||||...+.-+- +|||++-|++++|+.|++|-|.
T Consensus 213 ~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~ 292 (362)
T KOG1013|consen 213 RDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD 292 (362)
T ss_pred ccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc
Confidence 3557777777765432 3467888997777 8899999999998875433 3469999999999999999886
Q ss_pred ecCCC-CCCeEEEEEeecCCC-CCcccceEE
Q 000124 2064 FDVPP-KGQKLHIICKSKNTF-GKSTLGKVT 2092 (2138)
Q Consensus 2064 ~~~~p-~~~~l~~~~~~~~~~-~k~~~g~~~ 2092 (2138)
..-.- .+-|+-|.||+.+.. +.++.|-+-
T Consensus 293 i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~ 323 (362)
T KOG1013|consen 293 IGPGDLAYKKVALSVGDYDIGKSNDSIGGSM 323 (362)
T ss_pred CCccchhcceEEEeecccCCCcCccCCCccc
Confidence 54211 356899999999877 667776543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=88.51 E-value=2.5 Score=47.40 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=80.6
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhh-cCchhHHHHhhh-chHHHHHHHHc--cCCHHHHHHHHHHHHHhhhccch
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~-~n~~~~~~L~e~-~gI~~LV~LL~--sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
.+.+++..++...+.+ -...+..++..++ ..+++...+... +.++.++.+.. ..+...+..++++|..-|.+ ..
T Consensus 43 ~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~ 120 (157)
T PF11701_consen 43 KISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS 120 (157)
T ss_dssp HHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH
Confidence 4456666676665444 5677888888885 456777776655 56888999998 78899999999999988877 34
Q ss_pred hhHHhhhchhHHHHHHHhc-CCchh-hHHHHHHHHHHH
Q 000124 466 IWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAIL 501 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nL 501 (2138)
.+..| ...+++.|.++++ ++++. +|..|+.+|++|
T Consensus 121 ~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 44444 5788999999995 55666 899999998864
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=88.31 E-value=8.7 Score=43.92 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhH
Q 000124 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2138)
Q Consensus 650 s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~L 729 (2138)
++.+|.+++.+++.|+...+... +..++.+...|+|.++.+|..|..+|.+|...... .. +...+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~-----k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KV-----KGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--ee-----hhhhhHHH
Confidence 47889999999999987544333 23467888999999999999999999999862221 11 12234778
Q ss_pred HhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 730 IKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 730 v~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
+.++.+++++++..|...+..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988764
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=88.27 E-value=17 Score=41.57 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh----chhhHHHHHHHhcCC
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----DSATINQLLALLLGD 604 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----e~~aI~~Li~LL~~~ 604 (2138)
++.+|.++..+++.|+...+.. . ...++.+...++++++.+|+.|..+|.+|.... +...+..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 4788999999999998733221 1 335778889999999999999999999998653 223347888899999
Q ss_pred CcchHHHHHHHHHHHHhh
Q 000124 605 SPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 605 d~~V~~~A~~AL~~La~~ 622 (2138)
+++|+..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999998888877644
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.1 Score=56.01 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=85.5
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCe------EEEEEeecC--C
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQK------LHIICKSKN--T 2082 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~------l~~~~~~~~--~ 2082 (2138)
+++|.|++|-|..+. -+..=++.=+| +|+.=.|-.|-++-.|.||.+--|-+|-.-++++ +-++|..-+ +
T Consensus 1 ~ivl~i~egr~F~~~-~~~~~vv~a~~-ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 1 LIVLSILEGRNFPQR-PRHPIVVEAKF-NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred CEEEEEecccCCCCC-CCccEEEEEEe-CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 478999999999666 44455667788 9999899999999999999999999998877766 778888875 7
Q ss_pred CCCcccceEEEEecceee--cc---eecceeecCCCCC
Q 000124 2083 FGKSTLGKVTIQIDKVVT--EG---VYSGLFNLNHDNN 2115 (2138)
Q Consensus 2083 ~~k~~~g~~~~~~~~v~~--~~---~~~~~~~l~~~~~ 2115 (2138)
..||++|||-+.|.-+|. +| .=..+|.|.+.+|
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS 116 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEcccccc
Confidence 799999999999998821 33 5567999999944
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.47 Score=58.50 Aligned_cols=108 Identities=22% Similarity=0.320 Sum_probs=86.1
Q ss_pred CceEEEEEecccccccccC---CCCceEEEEec-CC--C-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLKQTMG---TTNAFCRLTIG-NG--P-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~---~~~~~~~~~~~-~~--~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
-|.|.|-|++|.+|..|-| -..|||++.+= +| - ++|||.-+|+.+|-+.|.- .|+++|.+--|-+.||+.=
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l--~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQL--SFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhh--hhccCCCccEEEEEEeccc
Confidence 4889999999999944323 67999999862 22 2 3469999999988777654 5689999999999999973
Q ss_pred CC--CCcccceEEEEecceeecc-eecceeecCCCCCCCC
Q 000124 2082 TF--GKSTLGKVTIQIDKVVTEG-VYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2082 ~~--~k~~~g~~~~~~~~v~~~~-~~~~~~~l~~~~~~~~ 2118 (2138)
-. .|+.||-.-|.+++.=.-- -..++|.|-+++++.+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl~~ 385 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSLVP 385 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCCccCCC
Confidence 22 8999999999888875543 6789999999988887
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=87.34 E-value=8.7 Score=43.31 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHhhhchHHHHHHHHccCC------HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC--chhhHHHHHHH
Q 000124 426 QWVSHAEAKKVLIGLITMAT------ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQL 497 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~sss------~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~a 497 (2138)
.++...+|+..|+.++..+. .+...++..++..|-.++ -..+.......|..++...+.. +..+.+.++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45677899999999998866 366777778888887774 3344555677778888877644 57899999999
Q ss_pred HHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC
Q 000124 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 498 L~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~ 546 (2138)
|-++...++.....+.++=-++.|+..|+..+++++..+...+-.|-..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 9999986666667777777889999999999999999998888777554
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=87.14 E-value=4.7 Score=45.31 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHHHH
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLISL 482 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV~L 482 (2138)
++.+|..+..++..+. +..+.-.....-+++-.++..++.+....+..++..+--..++....+. ..|.++.+..+
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 3448999999988884 2222222333455666677766666788888888888777777777666 44557788888
Q ss_pred hc--CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHH-HHHHHHHHHHHH
Q 000124 483 LG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQK-AREVAAHVLWIL 543 (2138)
Q Consensus 483 L~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~-vre~Aa~aL~nL 543 (2138)
+. +.+..++..++.+|..-|. ++.+...+...+++-|.++++.+ ++. +|..|+-+|+.|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 88 7888899999999877665 45555555566889999999654 555 788888777653
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=86.94 E-value=12 Score=46.42 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=106.9
Q ss_pred hHHHHH-HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCCh--hHH
Q 000124 475 GIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE--DIR 551 (2138)
Q Consensus 475 gIp~LV-~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd--~~r 551 (2138)
.+..|+ ..+++.+..+|+.|+.+|+-.+..+.+. ....++.+...++.++..++..|..++..+..... ...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 6778899999999999999988754422 22356777888877899999999999998854211 111
Q ss_pred HH------HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh---c-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000124 552 AC------VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D-SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2138)
Q Consensus 552 ~~------I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~---e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~ 621 (2138)
.. ......+..+.+.+.+.+++++..++..+..|.-.. + ...+..|+-+.-+....-......+|+.+..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11 111234455667888889999999999999987653 3 4555655555444333333456778887765
Q ss_pred h-hcchHHHHhhhcccchhhHHHHhhcCC
Q 000124 622 M-ALQEDLVQKGSAANKGLRSLVQVLNSS 649 (2138)
Q Consensus 622 ~-~~~~d~v~~~l~~~GaI~aLV~LLks~ 649 (2138)
. .......+. .....+++.+-.+.+..
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 4 212111222 23344667666666543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=86.92 E-value=23 Score=49.25 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=112.6
Q ss_pred cCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc----CC----HHHHHHHHHHH
Q 000124 83 AQAMPLFISILRSG-----TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS----ES----TDTRKAAAEAL 149 (2138)
Q Consensus 83 aGgVp~LV~LLks~-----~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s----ed----~eVr~aAa~AL 149 (2138)
.||+..++.++.+- ..+.....+.+|...++-..+|+.+...++++.|++.|.. +. .++-+.-..++
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 79999999999763 3456667788888888999999999999999999988853 23 56667777777
Q ss_pred HHhhcCCCCCChhhHHHHHHcC--------cHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHH
Q 000124 150 YEVSSGGLSDDHVGMKIFVTEG--------VVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2138)
Q Consensus 150 ~nLS~~~~nkd~~gre~IveaG--------~Ip~Ll~LL~s~s-~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~ 220 (2138)
..|.......+..+........ -+..|++.+.++. ...+.+....+++|-.|+.+++.....+++.= ..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--KP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--HH
Confidence 6665421100000001111122 3778888887542 23467888999999999998877644443311 11
Q ss_pred HHHhhcc---CCHHHHHHHHHHHHHHHhhcC------CCcchhhccchHHHHHHHhc
Q 000124 221 IVGLLSS---DNAAAQSNAASLLARLMLAFG------DSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 221 Lv~lL~s---~s~evq~~A~~aL~nLs~~~~------e~r~~l~~~GaL~~LL~LL~ 268 (2138)
.+++=.- ..++- ...+..++.++..-+ ..+..+.+.|.+...+..+.
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 1111000 11111 233666777774322 23344667788877776664
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.65 E-value=28 Score=44.93 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-HHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCch
Q 000124 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAK-KEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED 116 (2138)
Q Consensus 39 ~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~-d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~ 116 (2138)
..|.+++..+++. ...+++..|+..|..+..+. ..-+..-+. ..+..+++.|.+ .++-.+..|+++|..++.+..
T Consensus 286 ~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 286 ALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 5677777777655 44567888888888775544 333332222 356778899987 678889999999999987644
Q ss_pred hHHHHHhcCChHHHHHhhccCCHHHHHHHH-HHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000124 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAA-EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2138)
Q Consensus 117 ~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa-~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al 195 (2138)
.+..=--.-+|..++..-.+.+.++...|. .++..++++ ++.. .|..+..++.... + .....++
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~----~P~~--------~I~~i~~~Ilt~D--~-~~~~~~i 427 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH----LPLQ--------CIVNISPLILTAD--E-PRAVAVI 427 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----Cchh--------HHHHHhhHHhcCc--c-hHHHHHH
Confidence 332221123455666665564444444444 456666653 2221 1222222332211 2 2344556
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
..+-.++..-..-.-.-.-..-.|.+++.-.+.+..+|..++.+|-.+.
T Consensus 428 Km~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 428 KMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 6666776653221111122335788888888888999999999888777
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.55 E-value=14 Score=48.17 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=92.1
Q ss_pred ccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCc
Q 000124 635 ANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 635 ~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
..|.+..|.+. .+++++++|..|+.+|.-+|..+ ...+...+++|.+ .+..+|...+.+|+-.+.+.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~-- 617 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT-- 617 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--
Confidence 45678888887 67789999999999999998743 3455556677755 58899999999998776522
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
+.+. ++..|-.|..+.++-||+.|+-+++.+.. +|+...... +.+..+.+++.+.++..-.+--.+|
T Consensus 618 --G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~--~I~k~f~~vI~~Khe~glaklGA~l 686 (926)
T COG5116 618 --GDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVK--RIIKKFNRVIVDKHESGLAKLGAVL 686 (926)
T ss_pred --ccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHH--HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 1121 45556667788889999999999988764 444333222 3556677777776665443333333
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.04 E-value=2.1e+02 Score=42.19 Aligned_cols=544 Identities=15% Similarity=0.118 Sum_probs=244.7
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh---HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL---RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~---r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
+.+..++..|..+...+|..|+++|..+..-+.. +..+. ..+-+=+.+.+..||++|...++..-.. .
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq-----~~Vh~R~~DssasVREAaldLvGrfvl~----~ 886 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQ-----EAVHGRLNDSSASVREAALDLVGRFVLS----I 886 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHH-----HHHHHhhccchhHHHHHHHHHHhhhhhc----c
Confidence 4567778888888899999999999988643321 11111 1222334456889999999999854431 1
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCC-CCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhcc---CCHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPK-NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS---DNAAAQSNA 236 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~-s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s---~s~evq~~A 236 (2138)
+. .++...+.+.+. ...+-.|+..+++.++.+|...+..-. -++...++|.. +...++.-+
T Consensus 887 ~e---------~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 887 PE---------LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HH---------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHH
Confidence 11 233333333211 113456999999999999998765421 12333444443 334489999
Q ss_pred HHHHHHHHhhcCCC--cchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhh-----cCHHHHHHHHh---cCCHHHH
Q 000124 237 ASLLARLMLAFGDS--IPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSS-----KSIKAKKAVVA---ADGVPVL 306 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~--r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~-----~s~e~Rk~i~e---~ggL~~L 306 (2138)
+.++.++=...+.. .+.-.. .-+...+....+.-+ -...+--..+..+.. ......+.+.. ...+..+
T Consensus 952 ~etf~klWF~p~~~~~d~~~~~-~kI~~~~~vv~~~~d-~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~ 1029 (1692)
T KOG1020|consen 952 RETFLKLWFTPVPEVNDQPAKA-RKISLEVDVVMSQVD-LMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLL 1029 (1692)
T ss_pred HHHHHHHhccCCCcccccHHHH-HhhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHH
Confidence 99988876322211 111110 011111111110000 000000011111111 00111111111 1122222
Q ss_pred HHhhcCCchh----hhhhhhhhhhHHHHHHHHHHhhcCchhH-----HHHhhhhcCCCCchhhHHHHHHHHHHHH-HHhh
Q 000124 307 IGAIVAPSKE----CMQGQRGQALQGHATRALANIYGGMPAL-----VVYLGELSQSPRLAAPVADIIGALAYAL-MVFE 376 (2138)
Q Consensus 307 I~LL~s~s~e----~mq~~~~~alqe~Al~ALanIsGgis~L-----I~~L~elL~~~~ss~~~A~~L~aLa~~l-~~l~ 376 (2138)
.+.+.....+ .+.....++-....+-.|.-.+...+.+ +..|...|.....+...+.++..+.... .+++
T Consensus 1030 ~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlP 1109 (1692)
T KOG1020|consen 1030 THCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLP 1109 (1692)
T ss_pred HHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhh
Confidence 2222211100 0111111111122223333333222221 2234444554434444555554444332 1221
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc-hhHHHHhhhchHHHHHH---HHccC--------
Q 000124 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FLSQWVSHAEAKKVLIG---LITMA-------- 444 (2138)
Q Consensus 377 q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~-~~~~~L~e~~gI~~LV~---LL~ss-------- 444 (2138)
--+ ...+.|- ..++..|..++-..+.. .-.+|.-+++.++..- ...+.+. .+...... .+++.
T Consensus 1110 lv~-~~sesfL-~sLEe~L~~~i~k~g~a-~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1110 LVA-NPSESFL-ASLEEDLLKRIVKMGMA-TVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred hhc-cchHHHH-HHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchh
Confidence 001 1112222 25666666555443333 3467777888887531 1111111 11222222 22222
Q ss_pred CHHHHHHHHHHHHHhhhcc----chh-hH------HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 445 TADVREYLILSLTKLCRRE----VGI-WE------AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 445 s~evq~~Aa~aL~~Ls~~s----~~~-~~------~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
........+.+++-+++.- +.. +. .-...+.+..|..+.+..+..+|..|+..|+.+|..++.. +.
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l---~~ 1261 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSL---FT 1261 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchh---hh
Confidence 1133445556666666521 110 00 1123455666777778888999999999999998754443 11
Q ss_pred hcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcCChhHHHHHHHcCC-------cchhhhccccCChhHHHHHHHHHHH
Q 000124 514 AAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCHSEDIRACVESAGA-------VPAFLWLLKSGGPKGQDASAMALTK 584 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~sd~~r~~I~e~Ga-------I~aLv~LLkS~~~evq~~Aa~AL~n 584 (2138)
+......+-..|.+.. ...+..+...+.-.-... +..+...|. ..-+-++....+...-...+.++..
T Consensus 1262 ~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ee---e~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Q 1338 (1692)
T KOG1020|consen 1262 SREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEE---EKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQ 1338 (1692)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---HHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHH
Confidence 2222233333444432 121333333332221111 111111111 0011111111111111111222222
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc-hhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK-GLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G-aI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
+. ++.+++..-+.+..++..+.+.+....+ .++..++ .++.|+.+-.+..++.|..|-..|.+
T Consensus 1339 lf-------l~~ILe~cl~~d~~~r~~aikvl~liL~---------QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~e 1402 (1692)
T KOG1020|consen 1339 LF-------LDNILESCLDRDLQVRLVAIKVLKLILN---------QGLVHPVHCVPTLIALETDPSQAIRHVADELLKE 1402 (1692)
T ss_pred HH-------HHHHHHHHhccchHHHHHHHHHHHHHHH---------ccCCCccchhhhheeecCChHHHHHHHHHHHHHH
Confidence 22 2333444445566777777777776543 2222222 48999998888899999999999999
Q ss_pred HhhcChhhhhhhhhCCC
Q 000124 664 LFSMRQDICGSLATDEI 680 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~Ga 680 (2138)
|-...+.....-...|+
T Consensus 1403 id~kY~gfv~sk~~~G~ 1419 (1692)
T KOG1020|consen 1403 IDEKYEGFVFSKLSQGV 1419 (1692)
T ss_pred HHHhhHHHHHHHHHhhh
Confidence 97655554444444443
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=85.91 E-value=28 Score=44.74 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhcH---HHHHHHhhhcCcHHHHHHHHhcC-------CHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000124 56 QERELITMRILTIAKAKK---EARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2138)
Q Consensus 56 ~ere~AL~~L~~L~~~~d---~ak~lI~~~aGgVp~LV~LLks~-------~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G 125 (2138)
.+|-.|+-..-++++++| .+|+.+++ +=|.+-+-++|+++ +.-.+.-+..+|.-+|.+++....---..
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~ 104 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS 104 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH
Confidence 557888877778887765 46788888 78899999999874 23456678888888998877543333337
Q ss_pred ChHHHHHhhcc-CCHH------HHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCC
Q 000124 126 CIPPLLSLLKS-ESTD------TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184 (2138)
Q Consensus 126 ~Ip~Lv~LL~s-ed~e------Vr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s 184 (2138)
.||.|..++.. .|++ +.+.+-..|..++. .+.|...++..|+++.+-++-..++
T Consensus 105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-----~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-----AEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-----CCchhHHHHhcCchHHHHHHHhCCC
Confidence 78999999976 3444 77889999999996 4668899999999999997665443
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=85.83 E-value=37 Score=42.92 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=134.9
Q ss_pred HHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhH-----Hh-hh-chhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWE-----AI-GK-REGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 427 ~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~-----~I-~e-~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.+...+.+..|+..+..-+-+.++.++..+.++-....+.+. -+ .. ...+..|+..++ ++++-..+...|+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence 445557778888888888889999999888888775433322 22 22 344555555554 4556666777778
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH-hcCChhHHHHHHH--cCCcchhhhccccCChhHHH
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL-CCHSEDIRACVES--AGAVPAFLWLLKSGGPKGQD 576 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL-s~~sd~~r~~I~e--~GaI~aLv~LLkS~~~evq~ 576 (2138)
.+..+ +.....+.....+..+.+..+.++-++-..|..++..+ +.|.....+.+.. .........++.+++--+++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 77774 44444555677788888888889999999999888885 4443333444332 12334556789999999999
Q ss_pred HHHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 577 ASAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 577 ~Aa~AL~nLs~~~-----------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
++...|+.+..+. +..-+..++.||++.+..++..|-+..-........+..+...
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~i 294 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDI 294 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHH
Confidence 9999999998663 2345678999999999999999988888776554444444443
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.35 E-value=94 Score=37.50 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh------------cCCHHHHHHHHHHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR------------SGTPLAKVNVAATL 108 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk------------s~~~evr~~Aa~~L 108 (2138)
+-+.+-.+. ++..+|.|+..|.+--+..++.-.++-..-|.+..+++-.- ...+--..+++.+|
T Consensus 28 ~~~~i~~l~----~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 28 AYQLILSLV----SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred hhhHHHHhh----CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 444554452 33457877777665544332322222221333333332221 11334566788888
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCC
Q 000124 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKS-----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2138)
Q Consensus 109 ~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-----ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~ 183 (2138)
..++++++.|..+..+..---+-.+|.. ..+..|..+++.+..|...+ +..--..+...++||..++.+..+
T Consensus 104 QcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~d---d~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 104 QCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKND---DQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcC---cHHHHHHHHHhhhHHHHHHHHhcc
Confidence 9999999999999988664455566643 36778999999999999864 344456778889999999999988
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchh------HHHHH-hCcHHHHHH-hhccCCHHHHHHHHHHHHHHH
Q 000124 184 NKQDNVVQGFVTGALRNLCGDKDGYW------RATLE-AGGVDIIVG-LLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 184 s~ed~~V~e~Al~aL~nLcs~~e~r~------~aI~e-~GGI~~Lv~-lL~s~s~evq~~A~~aL~nLs 244 (2138)
+. .-+.-|+.++..+-.++.|-. ..+.. .-.+..++. +.+.++...-.+++++..+|+
T Consensus 181 Se---lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 181 SE---LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred cH---HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 72 234556777777766665320 00000 001222222 223345566666667666666
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.4e+02 Score=41.59 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=136.2
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhHHHHHhc---CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 85 AMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVLLG---GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 85 gVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~---G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.+...+..+.. ..+-++..|+++++..|+- ++... +.+..|.++....+.++-..-+.+|...+.... +
T Consensus 491 fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp--e 563 (1005)
T KOG2274|consen 491 FLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP--E 563 (1005)
T ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh--h
Confidence 34444555543 3556788888888777632 22221 445667777766788888888899998886421 1
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC----HHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN----AAAQSNA 236 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s----~evq~~A 236 (2138)
.....++.+.|..+.+....+ ++|.+...+-.++..++...... --...-.||.+++.|..+. ......+
T Consensus 564 ---f~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~~~--g~m~e~~iPslisil~~~~~~~~~~l~~~a 637 (1005)
T KOG2274|consen 564 ---FAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAANY--GPMQERLIPSLISVLQLNADKAPAGLCAIA 637 (1005)
T ss_pred ---hhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCcccccCchhhHHH
Confidence 234456668888888776655 67788888888888887633211 1112236899999998875 5677788
Q ss_pred HHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHH
Q 000124 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~ 304 (2138)
+.+|..+....+.-.......-+.+.+.++.-+..|..+-..+-.+|+.+.+...+.--...+.+|..
T Consensus 638 idvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 638 IDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 88888887655544444445557788888776666778888899999999885444433444444444
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=83.69 E-value=54 Score=42.24 Aligned_cols=97 Identities=12% Similarity=0.245 Sum_probs=70.0
Q ss_pred ChHHHHHhhccC---CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhC-CCCCCChhHHHHHHHHHHHH
Q 000124 126 CIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLN-PKNKQDNVVQGFVTGALRNL 201 (2138)
Q Consensus 126 ~Ip~Lv~LL~se---d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~-s~s~ed~~V~e~Al~aL~nL 201 (2138)
....|..++.+. -+.+-..|+..+..+-. .++..-..+.+.|.++.+++.+. ..-.....+....-.+|..|
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~----nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Ai 182 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIH----NEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAI 182 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHh----cCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHH
Confidence 344555666652 56677788888888886 36667788999999999999998 44333345666777888899
Q ss_pred hcCCCchhHHHHHhCcHHHHHHhhcc
Q 000124 202 CGDKDGYWRATLEAGGVDIIVGLLSS 227 (2138)
Q Consensus 202 cs~~e~r~~aI~e~GGI~~Lv~lL~s 227 (2138)
|-+..+. +.+.+.+.++.+.+.+.+
T Consensus 183 cLN~~Gl-~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 183 CLNNRGL-EKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred hcCHHHH-HHHHhcChHHHHHHHhCC
Confidence 9987765 666667777777765554
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.31 E-value=2.4e+02 Score=40.64 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=110.1
Q ss_pred hhhHHHHhhcC----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCc
Q 000124 638 GLRSLVQVLNS----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-SNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 638 aI~aLV~LLks----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~-dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
..+.+++.++. ++++.+..|..+|+.+..-+.+.|.. -++.|+..+. +.++.+|.++.-+++.++-..|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 35666667744 47999999999999997756665544 4677888886 78999999999999999875553
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
.-..+-+.|...|++.+..||..|..+|.+|..+. .|.-.|-++....++-+++++++.-|-.-...|
T Consensus 995 --------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 --------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred --------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 12336677888999999999999999999997532 344568889999999999999999888666555
Q ss_pred hhc
Q 000124 793 LKH 795 (2138)
Q Consensus 793 ~~~ 795 (2138)
...
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 553
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.90 E-value=2.3e+02 Score=39.98 Aligned_cols=406 Identities=17% Similarity=0.139 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHH-Hhc-cC-chhHHHHHhcCChHHHHHh
Q 000124 57 ERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLC-KD-EDLRLKVLLGGCIPPLLSL 133 (2138)
Q Consensus 57 ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~-~Ls-~~-e~~r~~v~~~G~Ip~Lv~L 133 (2138)
.+...+..+.++-..++++-.+..+ .--+|.++.-+..-...+|...+.+|- ... -+ -..++. -.|+-+
T Consensus 483 lqaeVlnrmfkIftshpeNYricqe-lytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL-------lSLCvL 554 (2799)
T KOG1788|consen 483 LQAEVLNRMFKIFTSHPENYRICQE-LYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL-------LSLCVL 554 (2799)
T ss_pred hhhHHHHHHHHHhccChHHhhHHhh-ccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH-------HHHHHH
Confidence 3556678888887777666555544 667899988887766677777666662 111 00 001110 122333
Q ss_pred hccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC------------------------------
Q 000124 134 LKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP------------------------------ 182 (2138)
Q Consensus 134 L~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s------------------------------ 182 (2138)
|..+ +......-......|.. -+...++.+.+-|.+..|...++.
T Consensus 555 LqqpIssalkhtIlsffvKLIs----fDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~l 630 (2799)
T KOG1788|consen 555 LQQPISSALKHTILSFFVKLIS----FDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHL 630 (2799)
T ss_pred hcchhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhcc
Confidence 3332 22222222222222222 133344555555555555444432
Q ss_pred ---------------CCCCChhHHH------HHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 183 ---------------KNKQDNVVQG------FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 183 ---------------~s~ed~~V~e------~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
++...+ +.+ ....+|..+-.++..++..+.++.|+..++.++ -+++-|...++++.
T Consensus 631 d~~daiisspklmeSgsgklp-lfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivs 707 (2799)
T KOG1788|consen 631 DSQDAIISSPKLMESGSGKLP-LFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVS 707 (2799)
T ss_pred ccccceeecchhhcccCCccc-hhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHH
Confidence 110111 111 125677788888888889999999999988888 34677888888888
Q ss_pred HHHhhcCCCcchhhccchHHHHHHHhccC-------CCH----hHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhh
Q 000124 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQN-------NDI----SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2138)
Q Consensus 242 nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-------sd~----~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL 310 (2138)
+|...++.. .+...+-.++..|+++ .+- .......++++.+-.-|-..+..+.+++|...|...+
T Consensus 708 cLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 708 CLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred HHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 887554431 2223445555555521 111 1122334445555444567788899999999998877
Q ss_pred cC--CchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc----hhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000124 311 VA--PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL----AAPVADIIGALAYALMVFEQKSGVDDE 384 (2138)
Q Consensus 311 ~s--~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s----s~~~A~~L~aLa~~l~~l~q~~~~~~~ 384 (2138)
.. ...+.+. .++ .....-+.++- -.++. +.-+-+..+. +...-+.+..+......+. .
T Consensus 784 htfqgftelhd-esD----lcvyiklfkil---FrlfT-lavcenasNrmklhtvITsqtftsLLresgllc-------v 847 (2799)
T KOG1788|consen 784 HTFQGFTELHD-ESD----LCVYIKLFKIL---FRLFT-LAVCENASNRMKLHTVITSQTFTSLLRESGLLC-------V 847 (2799)
T ss_pred HHhccchhcCC-chh----hhhHHHHHHHH---HHHHH-HHHhhcchhhhheeeeeeHHHHHHHHHHhccce-------e
Confidence 43 1111111 000 00000011100 00000 0000000000 1111122222211110000 0
Q ss_pred ccchhhHHHHHH----HHcCCCChhHHHHHHHHHHHHhhcCc--------------hhHHHHhhhchHHHHHHHHccCCH
Q 000124 385 PFDARQIEDILV----MLLKPHDNKLVQERVLEAMASLYGNI--------------FLSQWVSHAEAKKVLIGLITMATA 446 (2138)
Q Consensus 385 ~~~~~~Ie~~LV----~LL~s~~~e~vr~~Aa~AL~~L~~n~--------------~~~~~L~e~~gI~~LV~LL~sss~ 446 (2138)
.... .++..|. ..+.+++. ..+.+ ++..+.+.+ .....+...++++.++..+-...+
T Consensus 848 nler-~viqlllElalevlvppfL--tSEsa--AcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnyp 922 (2799)
T KOG1788|consen 848 NLER-HVIQLLLELALEVLVPPFL--TSESA--ACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYP 922 (2799)
T ss_pred cchH-HHHHHHHHHHHHhhCCchh--hhhHH--HHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhCh
Confidence 0000 1111111 22222221 22222 122222211 123456677889999998888889
Q ss_pred HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc---CCchhhHHHHHHHHHHHh
Q 000124 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILT 502 (2138)
Q Consensus 447 evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLa 502 (2138)
..|.+-...+..+++.++.+.......|.++.|+++.. +++.....++..++.-|+
T Consensus 923 K~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 923 KLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence 99999999999999988999888888899999888763 444444444444444333
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.78 E-value=42 Score=40.26 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=96.4
Q ss_pred HHhhcCchhHHHHhhhchHHHHHHHHcc-----CCHHHHHHHHHHHHHhhhccc-hhhHHhhhchhHHHHHHHhcCCchh
Q 000124 416 ASLYGNIFLSQWVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 416 ~~L~~n~~~~~~L~e~~gI~~LV~LL~s-----ss~evq~~Aa~aL~~Ls~~s~-~~~~~I~e~ggIp~LV~LL~s~d~~ 489 (2138)
-.++++++.+..+......-++-..+.. ..+..+..+...++.+..+++ +.-..+...+.||..++.++.+++.
T Consensus 104 QcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 104 QCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSEL 183 (293)
T ss_pred HHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHH
Confidence 4457889999998888877777777654 337788888899999887543 5566777889999999999999999
Q ss_pred hHHHHHHHHHHHhhcCchh--------HHHHHhcCCchHHH-HHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 490 HQEYAVQLIAILTEQVDDS--------KWAITAAGGIPPLV-QLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~--------r~~I~~aGaIp~LV-~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
-|..|..++..+-..+..- |...+. ..+..++ ++.+.+++.....+..+..+|+. +...|+.+
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~-~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVA-LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 9999999998876632221 111111 1222233 34455688888888888888865 44444443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=82.71 E-value=4.8 Score=41.76 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC
Q 000124 59 ELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE 137 (2138)
Q Consensus 59 e~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se 137 (2138)
..++..|...+..-.. ..+.+. ..+++++..+.+++..+|..|+..|.++++.............++.|.+++.+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~---~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD---EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555443322 223332 478999999999999999999999999986544333323347788899999988
Q ss_pred CHHHHHHHHHHHHHh
Q 000124 138 STDTRKAAAEALYEV 152 (2138)
Q Consensus 138 d~eVr~aAa~AL~nL 152 (2138)
++.||..| ..|-.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99998776 455444
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=82.65 E-value=19 Score=48.88 Aligned_cols=173 Identities=21% Similarity=0.177 Sum_probs=102.7
Q ss_pred cchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCC
Q 000124 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 636 ~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~-~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~ 710 (2138)
..++..+.++++++.-...+ ++..|..+...- .. ....+..+..+++. +++.++..|..+++.+....
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 34577777777765333222 445555554421 11 12345556666653 45678888888888876511
Q ss_pred Ccc------cchhhhHHhcCChhhHHhhhh----cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC---
Q 000124 711 KTK------TTNKMSYIAEGDVKPLIKLAK----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--- 777 (2138)
Q Consensus 711 ~~~------d~~r~~I~~~G~V~~Lv~LL~----s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~--- 777 (2138)
... ...+........++.|...+. ..+.+.+..++.||+|+.. +..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhcccc
Confidence 000 001111223346666776665 3566777889999999962 45788888887776
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 778 ~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
...+|-.|+++|.++....+ ..+.+.|+.++.+..++...|..|...|
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 67899999999998865431 3456778888888888877888887554
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.4e+02 Score=39.15 Aligned_cols=251 Identities=16% Similarity=0.089 Sum_probs=128.8
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH-HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCch
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP 519 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV-~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp 519 (2138)
..+++...+.-|+..|++.+...++....-.. ..+..++ .++...+.+|+..++.+|..+... ..++. ...+.++
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~~--l~~~~l~ 342 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASNDD--LESYLLN 342 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhcc--hhhhchh
Confidence 34566778888899999988874544333222 2233344 455666788999999998877642 11111 1122333
Q ss_pred ---HHHHHhhhCCHHHHHHHHHHHHHHhcCC-hhHHHHHH--HcCCcchhhhccccCChhHHHHHHHHHHHHH----Hhh
Q 000124 520 ---PLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVE--SAGAVPAFLWLLKSGGPKGQDASAMALTKLI----RAA 589 (2138)
Q Consensus 520 ---~LV~LLks~d~~vre~Aa~aL~nLs~~s-d~~r~~I~--e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs----~~~ 589 (2138)
.+..+.++.+++.|..+...++.|+.-. ...+..+. -.+...+|+-.+.+.+|.+-..+-..+.-+. ...
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHH
Confidence 3445667889999999888877775521 11222222 1345556666778888866555544443221 111
Q ss_pred chhhHHHHHHHhcCCCc-chHHH-HHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 590 DSATINQLLALLLGDSP-SSKAH-VIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~-~V~~~-A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.....+.. + +.+. ..+.. .-+|. .+.+ .++|.... .......++++.-+.+|+.+..--.+...+
T Consensus 423 ~~~~~q~~---l-d~~~~~~q~Fyn~~c~-~L~~--i~~d~l~~------~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 423 LYHLFQES---L-DTDMARFQAFYNQWCI-QLNH--IHPDILML------LLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred HHHHHhhh---h-HHhHHHHHHHHHHHHH-HHhh--hCHHHHHH------HHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 11111111 1 1111 11100 00010 0110 11111110 123333445555567777766655554432
Q ss_pred -ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 668 -RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 668 -~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+..+...-..-....+-.+.++..++++..|..|+..+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 12222222222234566677788999999999999887753
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.87 E-value=3.1e+02 Score=40.74 Aligned_cols=135 Identities=10% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhch
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~g 474 (2138)
++..+..+. ..+|..|.++|+.+..-+.. .+...+....+..-+..+...+++.|+..++.+....++.....
T Consensus 821 Il~~l~e~~-ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy---- 893 (1692)
T KOG1020|consen 821 ILSVLGENA-IALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY---- 893 (1692)
T ss_pred HHHHhcCch-HHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH----
Confidence 344455333 34899999999988543211 11122222334445566778889999999987665544443333
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nL 543 (2138)
...+..-+.+....||++++..++.++...++.-. .....+++| .+....+++-+.+++.++
T Consensus 894 -Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 23444445566678999999999999985444321 122233333 233444777777777776
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=81.70 E-value=18 Score=48.94 Aligned_cols=175 Identities=22% Similarity=0.150 Sum_probs=102.5
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCC
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~ 710 (2138)
...++..+.++++++.-...+ ++.++..+...-+. -....++.+..++++ ..+.++..|..+++++....
T Consensus 355 T~~a~~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~-----Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLE-AAQLLAVLPHTARY-----PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhhc-----CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 344677788888776422211 22222222211000 113455667777765 35568888888888877511
Q ss_pred CcccchhhhHHhcCChhhHHhhhhc----CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh-C--CCHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-E--GTSEGKK 783 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s----~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~-~--~~~~Vr~ 783 (2138)
-.....+........++.|...|.. .+.+.+...+.+|+|+.. +..++.+..++. + ....+|.
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHH
Confidence 1100110011123366666666543 455566679999999873 345566666655 2 2468999
Q ss_pred HHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 784 NASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 784 ~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
.|+++|.+++...+ ......|+.++.+..++...|..|..+|
T Consensus 499 ~Av~Alr~~a~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 499 AAILALRNLAKRDP-----------RKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHhCc-----------hHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999886432 3355678888887777777787776553
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=81.29 E-value=6.3 Score=52.33 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCC
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGD 604 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~ 604 (2138)
++...+.-|+..+...-.+-+...+ .++.+++.|+.+.+..+|..|...|..+|.+.. ..+.+.|.+||..+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 5788999999999998877666544 378899999999999999999999999997632 56789999999998
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhc---CCCHHHHHHHHHHHH
Q 000124 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN---SSNEENQEYAASVLA 662 (2138)
Q Consensus 605 d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLk---s~s~evre~Aa~ALa 662 (2138)
++.....+.++|..+....+. +.+..+..-+. ++++.+|+.+...|.
T Consensus 109 d~~E~~~v~~sL~~ll~~d~k-----------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQDPK-----------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887777777888776543221 23455554443 567888998887664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.00 E-value=44 Score=43.26 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=102.8
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHHhhcCh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL~s~~~ 669 (2138)
.+++..+..++..+...++++ ++.+ .+..+++.+.+ .++..|..|.++|..++...+
T Consensus 305 k~alsel~~m~~e~sfsvWeq----------------~f~~------iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 305 KEALSELPKMLCEGSFSVWEQ----------------HFAE------ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHHHHHHccchhHHHH----------------HHHH------HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 456677778888877777664 1112 25667777776 578889999999999998422
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR-PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~-s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
.+-.=-.+-++..++..-.+..+.+-..|..+...+.. +.|. .+ |..+..++-..+......++..+
T Consensus 363 -~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~--------I~~i~~~Ilt~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 363 -ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QC--------IVNISPLILTADEPRAVAVIKML 430 (516)
T ss_pred -HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch---hH--------HHHHhhHHhcCcchHHHHHHHHH
Confidence 22211112344555555566666666666655444443 3332 22 22233333334444444566667
Q ss_pred HHhhCCc--hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 749 ANLLSDP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 749 aNLa~~~--e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
..+..+- +.-. -+-.+..|.+++-..+.+..+|+.|+.||--+..
T Consensus 431 Tkl~e~l~~EeL~-~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 431 TKLFERLSAEELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHhhcCHHHHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 7666421 1111 1234688888888888899999999999987765
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=80.62 E-value=12 Score=51.29 Aligned_cols=144 Identities=11% Similarity=0.105 Sum_probs=102.9
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhh-c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--h
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ--E 626 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~--~ 626 (2138)
...+|.|++..++.+...+..-..+|.++-.+- . ....|-|++-|.-.|..++..+.+++-.+...... .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 356788888777666677778888888877652 1 34557788888888999988888888766533221 1
Q ss_pred HHHHhhhcccchhhHHHHhhcCCC---HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSN---EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s---~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~AL 703 (2138)
+.+ .-.++.+..+-++.+ -.+|+.|...|..|...-|...-.-.+..++.+|.+.|.|..--+|++|+++=
T Consensus 946 ~~~------~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHL------STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHH------hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 111 113555666555544 56899999999999885566555666778899999999999889999998775
Q ss_pred HHh
Q 000124 704 GAL 706 (2138)
Q Consensus 704 anL 706 (2138)
.+.
T Consensus 1020 ~~W 1022 (1030)
T KOG1967|consen 1020 QNW 1022 (1030)
T ss_pred hhh
Confidence 554
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=80.53 E-value=16 Score=45.17 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=109.3
Q ss_pred hhhHHH-HhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--cc
Q 000124 638 GLRSLV-QVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT--KT 714 (2138)
Q Consensus 638 aI~aLV-~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~--~d 714 (2138)
.+..|+ ..+++.+..+|+.+..+|+-.|-.+.+.... .++.+...+..+++.++..|.+++..+...... .+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 355555 4678889999999999999888755533322 356677777778999999999999988762211 11
Q ss_pred chh---hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC----CHHHHHHHHH
Q 000124 715 TNK---MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG----TSEGKKNASR 787 (2138)
Q Consensus 715 ~~r---~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~----~~~Vr~~Aa~ 787 (2138)
... ...........+.+.+.+.+++++..|++.++.|........ .+..+..|+-.-++. ++++|+--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 111 012234567778888999999999999999999864322111 134555666444332 4677777777
Q ss_pred HHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhcc
Q 000124 788 ALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2138)
Q Consensus 788 AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s 821 (2138)
.+-..+...+.++ .......++.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~Q----~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQ----ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHH----HHHHHHHHHHHHHHHhC
Confidence 7777776543222 22223455555555543
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.50 E-value=20 Score=46.84 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=116.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC----CHHHHHHHHHHHHHhhcCCCCCC
Q 000124 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE----STDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 85 gVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se----d~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
....+.+++.+++...+..+..-|..++.+......+....++..|.++..+. ..+....++.++..+-.++.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce---
Confidence 35678889999999999999999999999999999999999999999999884 35666677777776654321
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
..-..+...+|.......+.+. .+..+...|+..|-++..+++.....+.+..-++.|+..+...+..++..|...+
T Consensus 161 --vsW~~~~~~fV~~~a~~V~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 --VSWESVSNDFVVSMASYVNAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred --eeeeecccHHHHHHHHHHhhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 0111122234444444443222 3445677899999999998887778888899999999999999888888887777
Q ss_pred HHHHh
Q 000124 241 ARLML 245 (2138)
Q Consensus 241 ~nLs~ 245 (2138)
..+..
T Consensus 238 nal~~ 242 (713)
T KOG2999|consen 238 NALFR 242 (713)
T ss_pred HHHHh
Confidence 77663
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=80.38 E-value=7.9 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhh
Q 000124 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL 310 (2138)
.....|+++|.-++.-++.++..+.....+..++.++.......++..+..+|..+..+++.+.+.|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566889999999999999999999999999999997566789999999999999999999999999999999999999
Q ss_pred cCCc
Q 000124 311 VAPS 314 (2138)
Q Consensus 311 ~s~s 314 (2138)
.+.+
T Consensus 186 k~~~ 189 (257)
T PF08045_consen 186 KSKS 189 (257)
T ss_pred cccc
Confidence 8865
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2138 | ||||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 1e-04 |
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 3e-62
Identities = 109/630 (17%), Positives = 198/630 (31%), Gaps = 81/630 (12%)
Query: 2 QMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELI 61
Q + Q + A PE+ + Q + + +R
Sbjct: 67 QGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAE 126
Query: 62 TMRILTIAKAKKEARLLIG-SHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120
++L A +A+P +L + A + L K E R
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186
Query: 121 VLL-GGCIPPLLSLLKSES-TDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
++ + ++ +++ + +T + + L+ LS G+ G +P L +
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-----LSHHREGLLAIFKSGGIPALVN 241
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238
L + V L NL ++G A AGG+ +V LL+ N +
Sbjct: 242 MLG---SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298
Query: 239 LLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV 298
L L +S ++ SG +ALV ++ + + + L+ LS K A+V
Sbjct: 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIV 357
Query: 299 AADGVPVLIGAIVAPSKECMQ-----------GQRGQA-------------------LQG 328
A G+ L + PS+ +Q Q +
Sbjct: 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 417
Query: 329 HATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375
A L+N+ GG+ ALV + + P + L
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--- 474
Query: 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKK 435
+ + + ++V LL P + + + + + +L + A
Sbjct: 475 QDAEMAQNAVRLHYGLP-VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533
Query: 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495
L+ L+ A D + + T+ E G+ E+ E
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVE--------------------GVRMEEIVEACT 573
Query: 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ IL ++ I IP VQLL + + + VAA VL L E +E
Sbjct: 574 GALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIE 631
Query: 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
+ GA LL S +A L ++
Sbjct: 632 AEGATAPLTELLHSRNEGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 9e-48
Identities = 101/622 (16%), Positives = 196/622 (31%), Gaps = 102/622 (16%)
Query: 195 TGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPT 253
+ L++ + Y A L + + LL+ ++ + AA ++ +L
Sbjct: 128 SQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
+ V A+V+ + ND+ + L LS + A+ + G+P L+ + +P
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSP 246
Query: 314 SKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAP 360
+ HA L N+ GG+ +V L + + A
Sbjct: 247 VDS---------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAI 295
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420
D + LAY E K + LV +++ + + + + L
Sbjct: 296 TTDCLQILAYGNQ--ESKLIILAS-----GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480
+ A + L +T + + + + +L L + G + L+
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLV 405
Query: 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA--REVAAH 538
LLG A +++ LT +K + GGI LV+ + + E A
Sbjct: 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465
Query: 539 VLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
L L +D + V +P + LL + + L
Sbjct: 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL------------- 512
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
+ L A L ++G + LVQ+L ++++ Q
Sbjct: 513 --IRNLALCP-----------------ANHAPLREQG-----AIPRLVQLLVRAHQDTQR 548
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
+ +Q + +EIV C AL L+R
Sbjct: 549 RTSMGG-----TQQQFVEGVRMEEIVEAC---------------TGALHILARDIH---- 584
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775
N++ + ++L + + A L L D + A + E + LT +L
Sbjct: 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 644
Query: 776 EGTSEGKKNASRALHQLLKHFP 797
A+ L ++ + P
Sbjct: 645 SRNEGVATYAAAVLFRMSEDKP 666
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 7e-38
Identities = 99/664 (14%), Positives = 211/664 (31%), Gaps = 65/664 (9%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
G + + + A + ++ L+ + DD R I L L
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLI-----NYQDDAELATRAIP-ELTKL 158
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSL 456
L ++++V + + L + + ++ + + +L
Sbjct: 159 LN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217
Query: 457 TKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516
L G+ AI K GI L+++LG + +A+ + L + +K A+ AG
Sbjct: 218 HNLSHHREGL-LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQD 576
G+ +V LL + K + L IL +++ + + ++G A + ++++ +
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336
Query: 577 ASAMALTKLI--------RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628
+ + K++ ++ + L L S + + L ++ D
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL------SDA 390
Query: 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688
K L +LVQ+L S + AA +L++L + + +R +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 689 --TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746
+ + + + AL L+ + + + + ++KL S A
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
L L+ P A + + + L ++L + ++ S
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG---------------- 554
Query: 806 AQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865
V+ + ++ V + +LAR + ++I
Sbjct: 555 -----TQQQFVEGVRMEEI----VEACTGALHILARDIHN--------RIVIRGLNTIPL 597
Query: 866 LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
V L +Q A +L L D+ A + + L + ++HS + V
Sbjct: 598 FVQLLYSPIENIQRVAAGVLCELAQDKEAAE---AIEAEGATAPLTE-LLHSRNEGVATY 653
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
AA+L + E K Q L + P GY +
Sbjct: 654 AAAVLFRMS-EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDD 712
Query: 986 AFQE 989
Sbjct: 713 PSYR 716
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 4e-36
Identities = 85/604 (14%), Positives = 176/604 (29%), Gaps = 89/604 (14%)
Query: 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADAL-E 284
+ A + + R P +D G Q ++ A + L
Sbjct: 74 NQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKH 133
Query: 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPAL 344
A+ + A +A +P L + + + A +
Sbjct: 134 AVVNLINYQDDAELATRAIPELTKLLNDEDQV---------VVNKAAVMVHQ-------- 176
Query: 345 VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404
LS+ + ++ +V ++ ++
Sbjct: 177 ------LSKKEASRHAIMRSPQMVS------------------------AIVRTMQNTND 206
Query: 405 KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV 464
+ +L + + + L+ ++ V + I +L L +
Sbjct: 207 VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266
Query: 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQL 524
G A+ G+Q +++LL ++ + + IL +SK I A+GG LV +
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326
Query: 525 LEAGSQKA-REVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALT 583
+ + + + VL +L S + A VE AG + A L + L
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 584 KL-----IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638
L + + L+ LL D + +L + + + G
Sbjct: 386 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN---LTCNNYKNKMMVCQVGG 442
Query: 639 LRSLVQVL--NSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSNTQ 693
+ +LV+ + E+ E A L L S QD ++ + ++LL +
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA------------- 740
++ L N +G + L++L + D
Sbjct: 503 WPLIKATVGLIRN---LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559
Query: 741 ---------AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791
E AL L D + + + ++L ++ A+ L +
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 619
Query: 792 LLKH 795
L +
Sbjct: 620 LAQD 623
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 6e-33
Identities = 102/650 (15%), Positives = 207/650 (31%), Gaps = 53/650 (8%)
Query: 1275 SRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGN 1334
+R R+ AA + D S A P V L+ S+ L V
Sbjct: 88 TRAQRVRAA-MFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQ-----MLKHAVVNLINY 141
Query: 1335 TSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPL 1394
A ++ + L K+L+ + + + A + + A A + + + +
Sbjct: 142 QDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 197
Query: 1395 ISLMQSDLSIVV-ESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCA 1453
+ MQ+ + L + + + + LV ++ ++ +
Sbjct: 198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITT 257
Query: 1454 LIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDAA 1512
L L + K+ + AG + + LL L T L + + A+
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 1513 KIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSH 1572
+ L + +++ + + L + + + + ++ L L PS
Sbjct: 318 GGPQAL-VNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQ 374
Query: 1573 AIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPK 1632
+ Q L +L + + + + LVQL G +N+ A L ++ + K
Sbjct: 375 RLVQNCLWTLRNL--SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432
Query: 1633 ---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV----- 1684
V GGI + + +++ + + E A L ++ + + V
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490
Query: 1685 --LVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGR 1742
+VK+LH + A L+ + ++ + + G I L+ LL +
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD----- 545
Query: 1743 LLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
+ +Q R E AL L++
Sbjct: 546 ---------------TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR 590
Query: 1803 SVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
++ + LL + ++ VA L + A+ G + ELL S N
Sbjct: 591 GLNTIPLFVQLLYSPI-ENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 648
Query: 1863 EVAGQAA-LLTKFLF-SNHTLQEYVSNELIRSLTAALERELWSTATINEE 1910
VA AA +L + ++ +S EL SL T + +
Sbjct: 649 GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLD 698
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-29
Identities = 81/643 (12%), Positives = 178/643 (27%), Gaps = 101/643 (15%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A ++ L L
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TSGTLHNLS 221
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F A + +L +G +A+ +G +
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQK 280
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILR 1186
++ L+ + L
Sbjct: 281 MVALLNK--------------------TNVKFLA-------------------------- 294
Query: 1187 PIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFR 1246
+ L + G+ +KLI+ +GG AL + + T + + +
Sbjct: 295 ----------ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 1247 ILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVP 1306
+L + L L S+ + L L ++ + +
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL--SDAATKQEGMEGLLG 402
Query: 1307 PLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL-SSNSSLELK 1365
LV +L + + A L LT N ++ +E+L + + + ++
Sbjct: 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV--CQVGGIEALVRTVLRAGDREDIT 460
Query: 1366 RNAA----ELCFIMFGNAKIIANPIASECIQPLISLMQS-DLSIVVESAVCAFERLLDDE 1420
A L + ++ L+ ++++ V L
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520
Query: 1421 QQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDL 1480
+ + LV+L+ + T + R ++V+A
Sbjct: 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC-------- 572
Query: 1481 LPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALV 1540
+ L R + N I + +L P ++ Q A L
Sbjct: 573 --------TGALHILARDIHNRIVIRG----LNTIPLFVQLLYSPIENI--QRVAAGVLC 618
Query: 1541 NILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNA 1600
+ + ++ ++ PL L S + + +L + E QD + +
Sbjct: 619 ELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQDYKKRLS 674
Query: 1601 VVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEI 1643
V L + +T L+ + P +
Sbjct: 675 VELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRS 717
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 7e-29
Identities = 97/587 (16%), Positives = 193/587 (32%), Gaps = 53/587 (9%)
Query: 1076 ATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIE 1135
R IP L LL ++ + AA + L + + V+ ++ + +
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQN-T 204
Query: 1136 SDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAP 1195
+D S L L + + IP LV++L P
Sbjct: 205 NDVETARCTSG-----------TLHNLSHHREGLLAIFKSGGIPALVNMLG-SPVDSVLF 252
Query: 1196 PVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLI 1255
A+ L ++ + K+ + AGGL + L+ + T L + + N +
Sbjct: 253 H-AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311
Query: 1256 RYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSA 1314
+ L+ ++ + + +R L L + K + + + L L+
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371
Query: 1315 ASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCF 1373
S+ ++ L L L+ T + LL +L ++L S+ + AA L
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDI-NVVTCAAGILSN 425
Query: 1374 IMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCA----FERLLDDEQQVELVE 1427
+ N K I+ L+ + D + E A+CA R D E V
Sbjct: 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485
Query: 1428 GYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSA 1487
+ + ++V+L+ +H + LI+ + + G I
Sbjct: 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP-----------R 534
Query: 1488 LCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQ 1547
L ++L + + + + F+ ++ + + AL L +
Sbjct: 535 LV-------QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 1548 SLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQL 1607
+ L I + L SP IQ++ +L L + + I + A PL +L
Sbjct: 588 VIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 1608 AGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQP 1654
+ A L ++S P+ E+ + + +P
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYK-KRLSVELTSSLFRTEPMT 688
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 1e-26
Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 72/617 (11%)
Query: 1412 AFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
F LD+ Q+ + V+ RL E + + + +
Sbjct: 97 MFPETLDEGMQIPSTQFDSAHPTNVQ-------RLAEPSQMLKHAVVNLINYQDDAELAT 149
Query: 1472 GIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
I LL + + ++ ++ + ++V + + +Q +
Sbjct: 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI-VRTMQNTNDVE 208
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QE 1589
L N+ + L+ + S I L++ L SP ++ L +LL QE
Sbjct: 209 TARCTSGTLHNLSHHREGLLAI--FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKV 1646
+ + + +V L + L+ ++ + +GG + +
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV------VLVKMLHSTLESTITVA 1700
+ + L + + VL L + K +V L L + +
Sbjct: 327 MRTYTYE---KLLWTTSRVLKV-LSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNC 380
Query: 1701 LNALLIHERTDASSAEQMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMK 1757
L L ++ +Q G++ L+ LL S + +G L NN + + M
Sbjct: 381 LWTLR---NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 437
Query: 1758 VSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQH----EGLARASASVSACRALISL 1813
I L + +L E A AL L+ E A ++ L
Sbjct: 438 CQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496
Query: 1814 LEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTK 1873
L S + + ++N +C N + E G I + +LL+ + + + ++
Sbjct: 497 LHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG- 554
Query: 1874 FLFSNHTLQEYVSNELIRSLTAALERELWSTATINE--EVLRTLHVIFMNFPKLHTSEAA 1931
+ E V E I L A V+R L+
Sbjct: 555 ---TQQQFVEGVRMEEIVEACTGA---LHILARDIHNRIVIRGLN--------------- 593
Query: 1932 TLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMK 1991
IP V L S E Q LC L D ++A+ A A L L+
Sbjct: 594 --TIPLFVQLLYSPIENIQRVAAGVLCEL-------AQDKEAAEAIEAEGATAPLTELLH 644
Query: 1992 TCPPSFHERADSLLHCL 2008
+ A ++L +
Sbjct: 645 SRNEGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-23
Identities = 88/630 (13%), Positives = 177/630 (28%), Gaps = 111/630 (17%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 209
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
+ L + +E + G + L+ L S V
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKS----GGIPALVNML----------GSPVDSVLFH-- 253
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 254 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 288 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L H+ + LV + L
Sbjct: 339 T-SRVLKVLSVCSSNKPAIVEAGGMQ---ALGLHLTDPSQRLV-------------QNCL 381
Query: 1160 EKLFEIEDVRVGSTA-RKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
L + D + LV +L D A +L+ + + NK+++ +
Sbjct: 382 WTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQ 439
Query: 1219 AGGLDALTKYLSLSPQDSTE-----ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHL 1273
GG++AL + + + + L L ++ +LH
Sbjct: 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499
Query: 1274 GSRGARLSAARALHQLF--DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLT 1331
S + A L + N G A+P LV +L A + +
Sbjct: 500 PSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG---- 554
Query: 1332 SGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECI 1391
+ + + E+ I+ + I
Sbjct: 555 -------------------TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI 595
Query: 1392 QPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
+ L+ S + + A L D++ E +E L L+ N +
Sbjct: 596 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655
Query: 1452 CALIKLGKDRTPRKLQMVKAGIIDNCLDLL 1481
L ++ +D+ Q K + L
Sbjct: 656 AVLFRMSEDKP----QDYKKRLSVELTSSL 681
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 3e-21
Identities = 88/698 (12%), Positives = 182/698 (26%), Gaps = 148/698 (21%)
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206
Query: 694 M-VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752
+ A ++ L LS ++ G + L+ + + A+ L NLL
Sbjct: 207 VETARCTSGTLHNLSH----HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 753 SD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811
V L + + +L + + + L L GN + + +
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLI 313
Query: 812 VLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA 871
+L G + LV +
Sbjct: 314 IL---------ASGG------------------------------------PQALVNIMR 328
Query: 872 EG-PPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L +L L + + + AL + S V+ L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
+ K++ M+ L + LV ++ S DI V T
Sbjct: 386 NLSDAATKQEGMEGL---------LGTLVQLL------GSDDINVVTC------------ 418
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
A +L ++ N + V + G +EAL +
Sbjct: 419 ----------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT-- 460
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
I + + +P + LL A +
Sbjct: 461 -EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG-LIRNLAL 518
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+ GA+ L+ L L + + + +E VR+
Sbjct: 519 CPANHAPLREQGAIPRLVQL-------------LVRAHQDTQRRTSMGGTQQQFVEGVRM 565
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
L I+ N++++ + + L
Sbjct: 566 EEIVEACTGAL----------------------HILARDIHNRIVIRGLNTIPLFVQLLY 603
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL- 1289
SP ++ + + L + + + + L +LH + G AA L ++
Sbjct: 604 -SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVAL 1327
D L+ + L ++ L
Sbjct: 663 EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIG 700
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 3e-58
Identities = 106/593 (17%), Positives = 198/593 (33%), Gaps = 80/593 (13%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179
L IP L LL E AA ++++S + I + +V +
Sbjct: 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRT 67
Query: 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239
+ N D G L NL ++G A ++GG+ +V +L S + A +
Sbjct: 68 MQNTN--DVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124
Query: 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
L L+L + V +G ++ +V L+ ++ A D L+ L+ + ++K ++A
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILA 183
Query: 300 ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAA 359
+ G L+ M+ + L +R L LS
Sbjct: 184 SGGPQALV--------NIMRTYTYEKLLWTTSRVLKV--------------LSVCSSNKP 221
Query: 360 PVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY 419
+ + G + L + L ++ + + L + +L
Sbjct: 222 AIVEA-GGMQ------------------------ALGLHLT-DPSQRLVQNCLWTLRNLS 255
Query: 420 GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLL 479
++ L+ L+ +V L+ L + + GI+ L
Sbjct: 256 DAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 480 ISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITA---AGGIPPLVQLLEAGSQKARE 534
+ + + E E A+ + LT + +++ A A G+P +V+LL S
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373
Query: 535 VAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594
A L A + GA+P + LL Q ++M T+
Sbjct: 374 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433
Query: 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQ 654
+ L + ++ + VQ+L S E Q
Sbjct: 434 EIV------------EGCTGALHILARDVHNRIVI----RGLNTIPLFVQLLYSPIENIQ 477
Query: 655 EYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707
AA VL +L + ++ ++ + P LL S + VAT +A L +S
Sbjct: 478 RVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 1e-52
Identities = 112/612 (18%), Positives = 192/612 (31%), Gaps = 129/612 (21%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSES-TD 140
+A+P +L + A + L K E R ++ + ++ +++ + +
Sbjct: 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
T + A L+ LS G+ G +P L L + V + L N
Sbjct: 76 TARCTAGTLHN-----LSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHN 127
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
L ++G A AGG+ +V LL+ N + L L +S ++ SG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
+ALV ++ + + + L+ LS K A+V A G+ L + PS+
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242
Query: 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG 380
L + L N LS + + ++
Sbjct: 243 -----LVQNCLWTLRN--------------LSDAATKQEGMEGLL--------------- 268
Query: 381 VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIG 439
LV LL D+ V +++L N V + L+
Sbjct: 269 ------------GTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 440 LITMAT--ADVREYLILSLTKLCRR---EVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
+ A D+ E I +L L R A+ G+ +++ LL S A
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAH---------------- 538
+ + + G IP LVQLL Q + +
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 539 ------VLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA 592
L IL R + +P F+ LL S Q +A L +L + ++A
Sbjct: 436 VEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494
Query: 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE 652
+ +G L ++L+S NE
Sbjct: 495 EA---------------------------------IEAEG-----ATAPLTELLHSRNEG 516
Query: 653 NQEYAASVLADL 664
YAA+VL +
Sbjct: 517 VATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-51
Identities = 93/615 (15%), Positives = 186/615 (30%), Gaps = 106/615 (17%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
A+ NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
V A+V+ + ND+ A L LS + A+ + G+P L+ + +P
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376
+ +A L N+ + + G L
Sbjct: 117 ---------VLFYAITTLHNLLLHQEGAKMAVRLA--------------GGL-------- 145
Query: 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKK 435
+V LL N + + L YGN + + +
Sbjct: 146 ----------------QKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188
Query: 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495
L+ ++ T + + + K+ AI + G+Q L L S++ + +
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
Query: 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ L+ D + G + LVQLL + AA +L L C++ + V
Sbjct: 249 WTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305
Query: 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKV 615
G + A + + G D I
Sbjct: 306 QVGGIEALVRTVLRAG--------------------------------DREDITEPAICA 333
Query: 616 LGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675
L H+ + + ++ Q + GL +V++L+ + A L ++ L
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393
Query: 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT------------------NK 717
+ ++LL Q +++ + N+
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777
+ + ++L + + A L L D + A + E + LT +L
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 513
Query: 778 TSEGKKNASRALHQL 792
A+ L ++
Sbjct: 514 NEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-38
Identities = 88/550 (16%), Positives = 183/550 (33%), Gaps = 58/550 (10%)
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREY 451
L LL ++++V + + L + + ++ + +
Sbjct: 21 ELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 452 LILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511
+L L G+ AI K GI L+ +LG + YA+ + L + +K A
Sbjct: 80 TAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG 571
+ AGG+ +V LL + K + L IL +++ + + ++G A + ++++
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 572 PKG-QDASAMALTKL-------IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623
+ ++ L L ++ + L L S + + L + L+ A
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN-LSDA 257
Query: 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNP 683
+ +G L +LVQ+L S + AA +L++L + +
Sbjct: 258 ATKQEGMEG-----LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312
Query: 684 CMRLL--TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA 741
+R + + + + + AL L+ + + + + ++KL S
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372
Query: 742 ETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGD 800
A L L+ P A + + + L ++L + ++ S Q
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ------- 425
Query: 801 VLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVP 860
V + +LAR +
Sbjct: 426 ------------------FVEGVRMEEIVEGCTGALHILARDVHN--------RIVIRGL 459
Query: 861 SSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSL 920
++I V L +Q A +L L D+ A + + L + ++HS +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE---AIEAEGATAPLTE-LLHSRNE 515
Query: 921 EVRVGGAALL 930
V AA+L
Sbjct: 516 GVATYAAAVL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-36
Identities = 94/579 (16%), Positives = 200/579 (34%), Gaps = 71/579 (12%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ +
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVRT 67
Query: 1356 LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415
+ + + +E R A + + + + S I L+ ++ S + V+ A+
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 1416 LL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
LL E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 1475 DNCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
++++ L T + + ++L+ S+ + A ++ L + L P L
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQ 245
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQ 1592
+ L L N+ + + ++ L+ L S + +L++L +
Sbjct: 246 NCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 1593 QDITTKNAVVPLVQLAGIGILN--LQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
+ + LV+ + + A+ AL +++ +A E+A+ ++
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--------EMAQNAVRL 353
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
P V+VK+LH + A L+ +
Sbjct: 354 HYGLP----------------------------VVVKLLHPPSHWPLIKATVGLIRNLAL 385
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
++ + + G I L+ LL + + +Q
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQD--------------------TQRRTSMGGTQQQ 425
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
R E AL L++ ++ + LL + ++ VA L
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVL 484
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ A+ G + ELL S N VA AA
Sbjct: 485 CELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-36
Identities = 68/489 (13%), Positives = 150/489 (30%), Gaps = 47/489 (9%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
+P L L + + A ++ L+ +K + Q+ +V
Sbjct: 17 RAIPELTKLLN--DEDQVVVNKAAVMVHQLS-------KKEASRHAIMRSPQMVSAIVRT 67
Query: 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTK 458
++ ++ + +L + + + L+ ++ V Y I +L
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 459 LCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518
L + G A+ G+Q +++LL ++ + + IL +SK I A+GG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDAS 578
LV ++ + + + + + + AG + A L +
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 579 AMALTKL-----IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633
L L + + L+ LL D + +L + + +
Sbjct: 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN---LTCNNYKNKMMV 304
Query: 634 AANKGLRSLVQVL--NSSNEENQEYAASVLADLFS---MRQDICGSLATDEIVNPCMRLL 688
G+ +LV+ + E+ E A L L S + ++ + ++LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364
Query: 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA-------- 740
+ ++ L N +G + L++L + D
Sbjct: 365 HPPSHWPLIKATVGLIRN---LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 741 --------------AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786
E AL L D + + + ++L ++ A+
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481
Query: 787 RALHQLLKH 795
L +L +
Sbjct: 482 GVLCELAQD 490
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-30
Identities = 96/611 (15%), Positives = 183/611 (29%), Gaps = 89/611 (14%)
Query: 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560
+ ++ A A IP L +LL Q AA ++ L A + S V
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 561 PAFLWLLKSGG-PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV 619
A + +++ + +A L L + K
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLH-----------------NLSHHREGLLAIFK----- 99
Query: 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679
+ G+ +LV++L S + YA + L +L ++ ++
Sbjct: 100 ----------------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
Query: 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739
+ + LL + L L+ +K+ +A G + L+ + +T + +
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRTYTYE 200
Query: 740 AA-ETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798
T L L ++ + AL L + + +N L L
Sbjct: 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260
Query: 799 GDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858
+ ++G ++ TLV L + D+N V A +++ L +
Sbjct: 261 QEGMEG------LLGTLVQLLGSDDINV--VTCAAGILSNLTCNNYKN-------KMMVC 305
Query: 859 VPSSIEPLVCCLAEGPPP--LQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIM 915
IE LV + + + AI L L Q A + + + + ++
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK-LL 364
Query: 916 HSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEV 975
H S + LI + I LV ++ + D +
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-----IPRLVQLL----VRAHQDTQR 415
Query: 976 RTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALS 1035
RT G ++ + ++ + G T AL +L N + + +
Sbjct: 416 RTSMGGTQQQFVEGVRMEEI-----VEGCTGALHILARDVH----NRIVIRGLNTIPLFV 466
Query: 1036 DKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVID 1095
L S ++A L L QD + L LL S
Sbjct: 467 QLLYS---------PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 1096 RFFAAQAMASL 1106
+AA + +
Sbjct: 518 ATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-28
Identities = 96/577 (16%), Positives = 189/577 (32%), Gaps = 56/577 (9%)
Query: 1059 ALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAI 1118
A+ I +QD + R IP L LL ++ + AA + L +
Sbjct: 1 AVVNLINYQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIM 55
Query: 1119 ANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSI 1178
+ V+ ++ + + L L + + I
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAG------------TLHNLSHHREGLLAIFKSGGI 103
Query: 1179 PLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE 1238
P LV +L P A+ L ++ + K+ + AGGL + L+ +
Sbjct: 104 PALVKMLG-SPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 1239 ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKD 1297
T L + + N + + L+ ++ + + +R L L + K
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 1298 SDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILS 1357
+ + + L L+ S+ ++ L L L+ T + LL +L ++L
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLG 276
Query: 1358 SNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCAFE 1414
S+ + AA L + N K I+ L+ + D + E A+CA
Sbjct: 277 SDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 1415 RL----LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
L + E V + + ++V+L+ +H + LI+ + +
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G I L ++L + + + + F+ ++ + +
Sbjct: 396 QGAIP-----------RLV-------QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
G AL L + + L I + L SP IQ++ +L L +
Sbjct: 438 GCTGALHILARDVHNRIVIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627
+ I + A PL +L + A L ++S
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 61/505 (12%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A +A L L
Sbjct: 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TAGTLHNLS 88
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F+A + +L +G +A+ +G +
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQK 147
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEI----EDVRVGSTARKSIPLLV 1182
++ L + + + + L + ++ ++ A LV
Sbjct: 148 MVAL---LNKTNVKFL-------------AITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 1183 DILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATIT 1242
+I+R R+L ++ +NK + EAGG+ AL +L+ Q + +
Sbjct: 192 NIMRT-YTYEKLLWTTSRVLK-VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249
Query: 1243 ELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLA 1301
L + + E L L+ +L AA L L + K
Sbjct: 250 TLRNLSDAATKQEGMEGLLG---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306
Query: 1302 GQAVPPLVDMLSAASECE--LEVALVALVKLTSGNTSKACLLTDI-DGNLLESLYKILSS 1358
+ LV + A + E E A+ AL LTS + + L + K+L
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 1359 NSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS------------------ 1400
S L + L + A I L+ L+
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426
Query: 1401 ----DLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIK 1456
+ +VE A L D ++ G + + L V+L+ + L +
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486
Query: 1457 LGKDRTPRKLQMVKAGIIDNCLDLL 1481
L +D+ + + G +LL
Sbjct: 487 LAQDKEAAE-AIEAEGATAPLTELL 510
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 8e-22
Identities = 81/505 (16%), Positives = 159/505 (31%), Gaps = 52/505 (10%)
Query: 1538 ALVNIL-EKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDIT 1596
A+VN++ + + + + I L L + ++ L +E + I
Sbjct: 1 AVVNLINYQDDAELATR-----AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55
Query: 1597 TKNAVVPLV--QLAGIGILNLQQTAVKALEKISTSW--PKAVADAGGIFEIAKVIIQDDP 1652
+V + + + + L +S A+ +GGI + K++
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115
Query: 1653 QPPHSLWESAALVLSNVLRFNTEYYFKVP----VVVLVKMLHSTLESTITVALNALLIHE 1708
S+ A L N+L V + +V +L+ T + + + L I
Sbjct: 116 ----SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQMKVSKYAIAP 1765
+ S + +G AL++++R++ E T+ R+L+ L + V +
Sbjct: 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231
Query: 1766 LSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMV 1825
L +L DP S+ L +LS L+ LL +
Sbjct: 232 LGLHLTDP---SQRLVQNCLWTLRNLSDAATKQEGMEG--LLGTLVQLLGSDDI-NVVTC 285
Query: 1826 AICALQNFVMCSRTNRRAVAEAGGILVVQELLL--STNAEVAGQAALLTKFLFSNHTLQE 1883
A L N + N+ V + GGI + +L ++ A + L S H E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 1884 YVSNELIRS-----LTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHL 1938
N + + L S + + + + + + P H IP L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRL 402
Query: 1939 VGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKS---------------QAMIAAEAI 1983
V L + Q + ++ + + I
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 1984 PILQMLMKTCPPSFHERADSLLHCL 2008
P+ L+ + + A +L L
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCEL 487
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 80/515 (15%), Positives = 158/515 (30%), Gaps = 56/515 (10%)
Query: 1485 PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE 1544
+ + ++ ++ + ++V + +Q + L N+
Sbjct: 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR-TMQNTNDVETARCTAGTLHNLSH 89
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDITTKNAVVP 1603
+ L+ + S I L+ L SP ++ L +LL QE + + +
Sbjct: 90 HREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 147
Query: 1604 LVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWE 1660
+V L + L+ ++ + +GG + ++ L
Sbjct: 148 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM---RTYTYEKLLW 204
Query: 1661 SAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIHERTDASSAE 1716
+ + VL L + + + L L + + L L ++ +
Sbjct: 205 TTSRVLKV-LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR---NLSDAATK 260
Query: 1717 QMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDP 1773
Q G++ L+ LL S + +G L NN + + M I L + +L
Sbjct: 261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320
Query: 1774 QTRSESGKLLAALALGDLS----QHEGLARASASVSACRALISLLEDQSTDEMKMVAICA 1829
R E A AL L+ + E A ++ LL S + +
Sbjct: 321 GDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379
Query: 1830 LQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNEL 1889
++N +C N + E G I + +LL+ + + + ++ + E V E
Sbjct: 380 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG----TQQQFVEGVRMEE 434
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVI-------FMNFPKLHTSEAATLC-------- 1934
I L + N V+R L+ I + + A LC
Sbjct: 435 IVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 493
Query: 1935 ---------IPHLVGALKSGSEAAQGSVLDTLCLL 1960
L L S +E L +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 4e-21
Identities = 85/610 (13%), Positives = 178/610 (29%), Gaps = 115/610 (18%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 76
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
A L + +E + G + L+ L S V
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKS----GGIPALVKML----------GSPVDSVLFY-- 120
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 121 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 155 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L + P + ++
Sbjct: 206 T-SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--------------------PSQRLV 244
Query: 1160 EK----LFEIEDVRVGSTARKS-IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKL 1214
+ L + D + + LV +L D A +L+ + + NK+
Sbjct: 245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKM 302
Query: 1215 IMAEAGGLDALTKYLSLS--PQDSTEATITELFRILFSNPDLIRYEASLSSLN---QLIA 1269
++ + GG++AL + + + +D TE I L + + + + ++ ++
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362
Query: 1270 VLHLGSRGARLSAARALHQLF--DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVAL 1327
+LH S + A L + N G A+P LV +L A + +
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 1328 VKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIA 1387
+ + E+ I+ +
Sbjct: 422 TQQQFVEGVR-----------------------MEEIVEGCTGALHILARDVHNRIVIRG 458
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLV 1447
I + L+ S + + A L D++ E +E L L+ N +
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518
Query: 1448 EATVCALIKL 1457
L ++
Sbjct: 519 TYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 6e-19
Identities = 85/609 (13%), Positives = 161/609 (26%), Gaps = 123/609 (20%)
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 694 M-VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752
+ A +A L LS ++ G + L+K+ + A+ L NLL
Sbjct: 74 VETARCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 753 SD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811
V L + + +L + + + L L GN + + +
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLI 180
Query: 812 VLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA 871
+L G + LV +
Sbjct: 181 IL---------ASGG------------------------------------PQALVNIMR 195
Query: 872 EG-PPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L +L L + + + AL + S V+ L
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
+ K+ + G L L+ L S DI V T
Sbjct: 253 NLSDAATKQ-----EGMEGLLGTLVQLL----------GSDDINVVTC------------ 285
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
A +L ++ N + V + G +EAL +
Sbjct: 286 ----------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT-- 327
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
I + + + +P + LL A +
Sbjct: 328 -EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG-LIRNLAL 385
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEV---------VLEK 1161
+ GA+ L+ L+ DT ++ + L
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGG 1221
L R+ +IPL V +L VA +L ++ + + G
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELAQDKE-AAEAIEAEGA 502
Query: 1222 LDALTKYLS 1230
LT+ L
Sbjct: 503 TAPLTELLH 511
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 74 EARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSL 133
R++I +PLF+ +L S + A L L +D++ + G PL L
Sbjct: 451 HNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509
Query: 134 LKSESTDTRKAAAEALYEVS 153
L S + AA L+ +S
Sbjct: 510 LHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 5e-56
Identities = 116/659 (17%), Positives = 202/659 (30%), Gaps = 132/659 (20%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKS-ESTD 140
+A+P +L + A + L K E R ++ + ++ +++ +
Sbjct: 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 72
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
T + A L+ LS G+ G +P L L + V + L N
Sbjct: 73 TARCTAGTLHN-----LSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHN 124
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
L ++G A AGG+ +V LL+ N + L L +S ++ SG
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
+ALV ++ + + + L+ LS K A+V A G+ L + PS+
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239
Query: 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG 380
L + L N LS + + ++
Sbjct: 240 -----LVQNCLWTLRN--------------LSDAATKQEGMEGLL--------------- 265
Query: 381 VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIG 439
LV LL D+ V +++L N V + L+
Sbjct: 266 ------------GTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312
Query: 440 LITMAT--ADVREYLILSLTKLCRR---EVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
+ A D+ E I +L L R A+ G+ +++ LL S A
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR--------------------- 533
+ + + G IP LVQLL Q +
Sbjct: 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432
Query: 534 -EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA 592
E L IL R + +P F+ LL S Q +A L +L + ++A
Sbjct: 433 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491
Query: 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE 652
+ +G L ++L+S NE
Sbjct: 492 EA---------------------------------IEAEG-----ATAPLTELLHSRNEG 513
Query: 653 NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711
YAA+VL + + + E+ + L + + L ++
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGAQGEP 569
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 6e-54
Identities = 92/568 (16%), Positives = 182/568 (32%), Gaps = 63/568 (11%)
Query: 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS 91
DD E + + + L+ + + ++K + ++ Q + +
Sbjct: 7 DDAELATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVR 63
Query: 92 ILRSGTPLAKV-NVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
+++ + A TL L + L + G IP L+ +L S A L+
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
+ + M + G + + LN N + T L+ L
Sbjct: 124 NLLLH---QEGAKMAV-RLAGGLQKMVALLNKTNVK---FLAITTDCLQILAYGNQESKL 176
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
L +GG +V ++ + S + +++ + P ++++G ++AL +
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
+ V+ + L L + S A K + L+ + + + A
Sbjct: 237 SQRLVQ----NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD---------INVVTCA 283
Query: 331 TRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377
L+N+ GG+ ALV + + P + L E
Sbjct: 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343
Query: 378 KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437
+ + ++V LL P + + + + + +L + A L
Sbjct: 344 ---AQNAVRLHYGLP-VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399
Query: 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL 497
+ L+ A D + + T + G+ E+ E
Sbjct: 400 VQLLVRAHQDTQRRTSMGGT--------------------QQQFVEGVRMEEIVEGCTGA 439
Query: 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESA 557
+ IL ++ I IP VQLL + + + VAA VL L E +E+
Sbjct: 440 LHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAE 497
Query: 558 GAVPAFLWLLKSGGPKGQDASAMALTKL 585
GA LL S +A L ++
Sbjct: 498 GATAPLTELLHSRNEGVATYAAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 5e-48
Identities = 103/596 (17%), Positives = 189/596 (31%), Gaps = 76/596 (12%)
Query: 200 NLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGA 259
NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 NLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57
Query: 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319
V A+V+ + ND+ A L L S + A+ + G+P L+ + +P
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS--- 113
Query: 320 GQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIG 366
+ +A L N+ GG+ +V L + + A D +
Sbjct: 114 ------VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQ 165
Query: 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426
LAY E K + LV +++ + + + + L
Sbjct: 166 ILAYGNQ--ESKLIILAS-----GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218
Query: 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486
+ A + L +T + + + + +L L + G + L+ LLG
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSD 275
Query: 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILC 544
A +++ LT +K + GGI LV+ + + E A L L
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335
Query: 545 CHS---EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI--------RAADSAT 593
E + V +P + LL + + L + + +
Sbjct: 336 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA 395
Query: 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN----------------- 636
I +L+ LL+ ++ +
Sbjct: 396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 455
Query: 637 -KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
+ VQ+L S E Q AA VL +L + ++ ++ + P LL S + V
Sbjct: 456 LNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGV 514
Query: 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
AT +A L +S Y V+ L +T + ETA L
Sbjct: 515 ATYAAAVLFRMSED------KPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIG 564
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 5e-39
Identities = 100/618 (16%), Positives = 214/618 (34%), Gaps = 73/618 (11%)
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ + +
Sbjct: 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVRTM 65
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERL 1416
+ + +E R A + + + + S I L+ ++ S + V+ A+ L
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 125
Query: 1417 L-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIID 1475
L E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185
Query: 1476 NCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS 1534
++++ L T + + ++L+ S+ + A ++ L + L P L +
Sbjct: 186 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQN 243
Query: 1535 ALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQ 1593
L L N+ + + ++ L+ L S + +L++L +
Sbjct: 244 CLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 1594 DITTKNAVVPLVQL--AGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDD 1651
+ + LV+ ++ + A+ AL +++ +A E+A+ ++
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--------EMAQNAVRLH 351
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTD 1711
P +VK+LH + A L+ +
Sbjct: 352 YGLPV----------------------------VVKLLHPPSHWPLIKATVGLIRNLALC 383
Query: 1712 ASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLL 1771
++ + + G I L+ LL + + +Q
Sbjct: 384 PANHAPLREQGAIPRLVQLLVRAHQD--------------------TQRRTSMGGTQQQF 423
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQ 1831
R E AL L++ ++ + LL + ++ VA L
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLC 482
Query: 1832 NFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN--HTLQEYVSNEL 1889
+ A+ G + ELL S N VA AA + + + ++ +S EL
Sbjct: 483 ELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL 541
Query: 1890 IRSLTAALERELWSTATI 1907
SL TA +
Sbjct: 542 TSSLFRTEPMAWNETADL 559
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 7e-33
Identities = 84/578 (14%), Positives = 180/578 (31%), Gaps = 46/578 (7%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
IP L +L + A ++ Q+ + IM + A+ + + + T
Sbjct: 16 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 73
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIK 1296
L + + + + L+ +L A LH L E K
Sbjct: 74 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
+ + +V +L+ + L + L L GN ++ G ++L I+
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG--PQALVNIM 191
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERL 1416
+ + +L + + ++ + + + +Q L + +V++ + L
Sbjct: 192 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 1417 LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDN 1476
D + E +EG ++ LV+L+ + +V L L + K+ + + G I+
Sbjct: 252 SDAATKQEGMEG--LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 1477 CLDLLPVAPS------ALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDF--- 1527
+ + A + L + + + + +L P
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369
Query: 1528 --SLWG----------------QHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLES 1569
+ G + A+ LV +L + + S
Sbjct: 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT--QRRTSMGGTQQQFVEGV 427
Query: 1570 PSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTS 1629
I + T L L H + I N + VQL I N+Q+ A L +++
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Query: 1630 --WPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVV 1683
+A+ G + +++ + + AA VL + + Y K
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEG----VATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQA 1721
L + T + L+ E + ++
Sbjct: 544 SLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRS 581
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 6e-31
Identities = 101/624 (16%), Positives = 201/624 (32%), Gaps = 60/624 (9%)
Query: 1066 FQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVA 1125
+QD + R IP L LL ++ + AA + L + + V+
Sbjct: 5 YQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVS 59
Query: 1126 GLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDIL 1185
++ + + L L + + IP LV +L
Sbjct: 60 AIVRTMQNTNDVETARCTAG------------TLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 1186 RPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELF 1245
A+ L ++ + K+ + AGGL + L+ + T L
Sbjct: 108 G--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165
Query: 1246 RILFSNPDLIRYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKDSDLAGQA 1304
+ + N + + L+ ++ + + +R L L + K + +
Sbjct: 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225
Query: 1305 VPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL 1364
+ L L+ S+ ++ L L L+ T + LL +L ++L S+ +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDI-NV 279
Query: 1365 KRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCAFERL----L 1417
AA L + N K I+ L+ + D + E A+CA L
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339
Query: 1418 DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNC 1477
+ E V + + ++V+L+ +H + LI+ + + G I
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP-- 397
Query: 1478 LDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQ 1537
L +L + + + + F+ ++ + + G AL
Sbjct: 398 ---------RLVQ-------LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441
Query: 1538 ALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITT 1597
L + + L I + L SP IQ++ +L L + + I
Sbjct: 442 ILARDVHNRIVIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 1598 KNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHS 1657
+ A PL +L + A L ++S P+ + E+ + + +P
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-ELTSSLFRTEPMA--- 552
Query: 1658 LWESAALVLSNVLRFNTEYYFKVP 1681
E+A L L + Y +
Sbjct: 553 WNETADLGLDIGAQGEPLGYRQDD 576
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 8e-31
Identities = 99/601 (16%), Positives = 182/601 (30%), Gaps = 89/601 (14%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
A A IP L +LL Q AA ++ L A + S V A + +++
Sbjct: 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68
Query: 571 G-PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV 629
+ +A L L + K
Sbjct: 69 NDVETARCTAGTL-----------------HNLSHHREGLLAIFK--------------- 96
Query: 630 QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT 689
+ G+ +LV++L S + YA + L +L ++ ++ + + LL
Sbjct: 97 ------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150
Query: 690 SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA-ETAVAAL 748
+ L L+ +K+ +A G + L+ + +T + + T L
Sbjct: 151 KTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207
Query: 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808
L ++ + AL L + + +N L L + ++G
Sbjct: 208 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---- 263
Query: 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868
++ TLV L + D+N V A +++ L + IE LV
Sbjct: 264 --LLGTLVQLLGSDDINV--VTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVR 312
Query: 869 CLAEGPPP--LQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
+ + + AI L L Q A + + + + +++H S +
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV-KLLHPPSHWPLIK 371
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
LI L G + L+ L + D + RT G ++
Sbjct: 372 ATVGLIRNLALCPAN-HAPLREQGAIPRLVQLL--------VRAHQDTQRRTSMGGTQQQ 422
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
+ ++ + G T AL +L N + + + L S N
Sbjct: 423 FVEGVRMEEI-----VEGCTGALHILARDVH----NRIVIRGLNTIPLFVQLLYSPIENI 473
Query: 1046 QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMAS 1105
Q +A L L QD + L LL S +AA +
Sbjct: 474 QRV---------AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 524
Query: 1106 L 1106
+
Sbjct: 525 M 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 3e-29
Identities = 83/648 (12%), Positives = 189/648 (29%), Gaps = 69/648 (10%)
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRI 1080
+ + A+ L+ L + + + + ++A+ + ++
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKA--------AVMVHQLSKKEASRHAIMRSPQM 57
Query: 1081 IPAL-ALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+ A+ + +++V A + +L S + +LAI SG + L+ ++G P
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGS-----P 110
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEI----EDVRVGSTARKSIPLLVDILRPIPDRPGAP 1195
L + L + E ++ + +V +L
Sbjct: 111 VDSVLFY-----------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFL 157
Query: 1196 PVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLI 1255
+ L + G+ +KLI+ +GG AL + + T + + ++L
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217
Query: 1256 RYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAA 1315
+ L L S+ + L L ++ + + LV +L +
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL--SDAATKQEGMEGLLGTLVQLLGSD 275
Query: 1316 SECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL-SSNSSLELKRNAA----E 1370
+ A L LT N ++ + G +E+L + + + ++ A
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRH 333
Query: 1371 LCFIMFGNAKIIANPIASECIQPLISLMQS-DLSIVVESAVCAFERLLDDEQQVELVEGY 1429
L + ++ L+ ++++ V L +
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 393
Query: 1430 DVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALC 1489
+ LV+L+ + T + R ++V+
Sbjct: 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC----------------T 437
Query: 1490 STIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSL 1549
+ L R + N I + +L P ++ Q A L + + ++
Sbjct: 438 GALHILARDVHNRIVIRG----LNTIPLFVQLLYSPIENI--QRVAAGVLCELAQDKEAA 491
Query: 1550 VTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAG 1609
+ PL L S + + +L + E QD + +V L
Sbjct: 492 EA--IEAEGATAPLTELLHSRNEGVATYAAAVLFRM--SEDKPQDYKKRLSVELTSSLFR 547
Query: 1610 IGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHS 1657
+ +TA L+ + P +
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMD 595
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 96/608 (15%), Positives = 188/608 (30%), Gaps = 99/608 (16%)
Query: 1416 LLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIID 1475
L++ + EL + L +L++ + +V + +L K R M ++
Sbjct: 2 LINYQDDAELATR--AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 59
Query: 1476 NCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSA 1535
+ + ++++ +
Sbjct: 60 AIVRTM-------------------------QNTNDVET-----------------ARCT 77
Query: 1536 LQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQD 1594
L N+ + L+ + S I L+ L SP ++ L +LL QE +
Sbjct: 78 AGTLHNLSHHREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 1595 ITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDD 1651
+ + +V L + L+ ++ + +GG + ++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIH 1707
+ L + + VL + + + + L L + + L L
Sbjct: 196 YE---KLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN- 250
Query: 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCE--ETSGRLLEAL-FNNGRIRQMKVSKYAIA 1764
++ +Q G++ L+ LL S + +L L NN + + M I
Sbjct: 251 --LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 1765 PLSQYLLDPQTRSESGKLLAALALGDLS----QHEGLARASASVSACRALISLLEDQSTD 1820
L + +L R E A AL L+ + E A ++ LL S
Sbjct: 309 ALVRTVLRAGDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ + ++N +C N + E G I + +LL+ + + + ++ +
Sbjct: 368 PLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG----TQQQ 422
Query: 1881 LQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVG 1940
E V E I L + N V+R L+ IP V
Sbjct: 423 FVEGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLN-----------------TIPLFVQ 464
Query: 1941 ALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHER 2000
L S E Q LC L D ++A+ A A L L+ +
Sbjct: 465 LLYSPIENIQRVAAGVLCEL-------AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517
Query: 2001 ADSLLHCL 2008
A ++L +
Sbjct: 518 AAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-25
Identities = 94/565 (16%), Positives = 180/565 (31%), Gaps = 74/565 (13%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A +A L L
Sbjct: 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TAGTLHNLS 85
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F+A + +L +G +A+ +G +
Sbjct: 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQK 144
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEK----LFEI----EDVRVGSTARKSI 1178
++ L+ + L L + ++ ++ A
Sbjct: 145 MVALLNK--------------------TNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 1179 PLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE 1238
LV+I+R R+L +++ +NK + EAGG+ AL +L+ Q +
Sbjct: 185 QALVNIMRT-YTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 1239 ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKD 1297
+ L + + E L L+ +L AA L L + K
Sbjct: 243 NCLWTLRNLSDAATKQEGMEGLLG---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 1298 SDLAGQAVPPLVDMLSAASECE--LEVALVALVKLTSGNTSKACLLTDI-DGNLLESLYK 1354
+ LV + A + E E A+ AL LTS + + L + K
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS-------------- 1400
+L S L + L + A I L+ L+
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 419
Query: 1401 --------DLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVC 1452
+ +VE A L D ++ G + + L V+L+ +
Sbjct: 420 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479
Query: 1453 ALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDA 1511
L +L +D+ + + G +LL A LFR+ + + +
Sbjct: 480 VLCELAQDKEAAE-AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
Query: 1512 AKIVEPLFMVLLQPDFSLWGQHSAL 1536
++ LF + + W + + L
Sbjct: 539 VELTSSLF----RTEPMAWNETADL 559
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-23
Identities = 95/662 (14%), Positives = 176/662 (26%), Gaps = 128/662 (19%)
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVA 696
+ L ++LN ++ AA ++ L + + ++V+ +R + +N A
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP 755
+A L LS ++ G + L+K+ + A+ L NLL
Sbjct: 75 RCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130
Query: 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTL 815
V L + + +L + + + L L GN + + ++L
Sbjct: 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLIIL-- 179
Query: 816 VDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPP 875
G + LV +
Sbjct: 180 -------ASGG------------------------------------PQALVNIMRTYTY 196
Query: 876 P-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAA 934
L +L L + + + AL + S V+ L +
Sbjct: 197 EKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS- 252
Query: 935 KEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFD 994
+ + G L L+ L S DI V T
Sbjct: 253 ----DAATKQEGMEGLLGTLVQLL----------GSDDINVVTC---------------- 282
Query: 995 VPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEG 1054
A +L ++ N + V + G +EAL +
Sbjct: 283 ------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT---EPA 327
Query: 1055 IWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGI 1114
I + + + +P + LL A + +
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPAN 386
Query: 1115 ILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEV---------VLEKLFEI 1165
+ GA+ L+ L+ DT ++ + L L
Sbjct: 387 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446
Query: 1166 EDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDAL 1225
R+ +IPL V +L VA +L ++ + G L
Sbjct: 447 VHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPL 503
Query: 1226 TKYL-SLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAAR 1284
T+ L S + +T A LFR+ P + S+ + L +A
Sbjct: 504 TELLHSRNEGVATYAAAV-LFRMSEDKPQDYKKRLSVELTSSL---FRTEPMAWNETADL 559
Query: 1285 AL 1286
L
Sbjct: 560 GL 561
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 95/661 (14%), Positives = 193/661 (29%), Gaps = 110/661 (16%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 73
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
A L + +E + G + L+ L S V
Sbjct: 74 ARCTAGTLHNLSHHREGLLAIFKS----GGIPALVKML----------GSPVDSVLFY-- 117
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 118 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 152 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L H+ + LV + L
Sbjct: 203 T-SRVLKVLSVCSSNKPAIVEAGGMQ---ALGLHLTDPSQRLV-------------QNCL 245
Query: 1160 EKLFEIEDVRVGSTARKS-IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
L + D + + LV +L D A +L+ + + NK+++ +
Sbjct: 246 WTLRNLSDAATKQEGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303
Query: 1219 AGGLDALTKYLSLS--PQDSTEATITELFRILFSNPDLIRYEASLSSLN---QLIAVLHL 1273
GG++AL + + + +D TE I L + + + + ++ ++ +LH
Sbjct: 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 363
Query: 1274 GSRGARLSAARALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLT 1331
S + A L + N G A+P LV +L A + +
Sbjct: 364 PSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG---- 418
Query: 1332 SGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECI 1391
+ + + E+ I+ + I
Sbjct: 419 -------------------TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 459
Query: 1392 QPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
+ L+ S + + A L D++ E +E L L+ N +
Sbjct: 460 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519
Query: 1452 CALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDA 1511
L ++ +D+ + + + L P A T I + D
Sbjct: 520 AVLFRMSEDKPQDYKKRLSVELTS---SLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
Query: 1512 A 1512
Sbjct: 577 P 577
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 4e-40
Identities = 84/463 (18%), Positives = 162/463 (34%), Gaps = 43/463 (9%)
Query: 216 GGVDIIVGLLSSDNAAAQSNAASLLARLML-AFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
+ + L+SD+ Q +A +++ I VI +G V LV+ + +N
Sbjct: 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
++ AA AL ++S + K VV AD VP+ I + S E ++ A AL
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVE---------VKEQAIWAL 197
Query: 335 ANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
N+ G Y+ + + + +I + L + + Q
Sbjct: 198 GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
L L+ D + + + G Q V K L+ L++ + V+
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ ++ + + + + L LL E ++ A I+ +T +
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC---HSEDIRACVESAGAVPAFLWLL 567
A+ A IPPLV+LLE K ++ A + DI + S G + LL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627
+ + + + AL +++ ++ + L + A I+ G
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGLNINEN------ADFIEKAG---------- 481
Query: 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670
G+ + + N++ E A ++ F +D
Sbjct: 482 ----------GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-32
Identities = 57/411 (13%), Positives = 142/411 (34%), Gaps = 20/411 (4%)
Query: 395 LVMLLKPHDNKLVQERVLEA--MASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
+ L D + ++ + S + + +++ + ++
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512
+LT + + + + + L I LL S + +E A+ + + D + +
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572
+ P++ L + A L LC + + A+P L+ S
Sbjct: 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 271
Query: 573 KGQDASAMALTKLI--------RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
+ + A++ L D +L+ LL +S + ++ +G+++T
Sbjct: 272 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT--- 328
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684
DL + L +L +L+S E ++ A ++++ + + ++ ++ P
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744
++LL ++ A+ S + +++G +KPL L + + E
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 745 VAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
+ AL N+L + E ++ + G + ++
Sbjct: 449 LDALENILKMGEADKEARGLNINENADFIEKAG-------GMEKIFNCQQN 492
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-25
Identities = 83/482 (17%), Positives = 163/482 (33%), Gaps = 59/482 (12%)
Query: 94 RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153
R+ P + D + L +P + L S+ + +A ++
Sbjct: 56 RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115
Query: 154 SGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213
S + + GVVP L + + + Q ++Q AL N+ + +
Sbjct: 116 SREHRPPI---DVVIQAGVVPRLVEFM--RENQPEMLQLEAAWALTNIASGTSAQTKVVV 170
Query: 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273
+A V + + LL + + + A L + D V+ A++ ++ L +N
Sbjct: 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKP 229
Query: 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333
S+ +A L L V + +P L I + E A A
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE---------TLVDACWA 280
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
++ + G + + ++ R
Sbjct: 281 ISYLSDGPQEAIQAVIDVRIPKR------------------------------------- 303
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
LV LL H++ LVQ L A+ ++ GN +Q V +A L L++ ++++
Sbjct: 304 -LVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE---QVDDSK 509
+++ + +A+ I L+ LL ++ + ++ A I+ + Q D
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Query: 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569
+ + G I PL LLE + EV L + E + ++ K+
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKA 480
Query: 570 GG 571
GG
Sbjct: 481 GG 482
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 67/407 (16%), Positives = 150/407 (36%), Gaps = 31/407 (7%)
Query: 24 ESNGTSAMDDPESTMSTVAKFLEQLHANMSS--PQERELITMRILTIAKAKKEARLLIGS 81
+ S++ + S + + L Q+ ++S QE+ T++ I + + +
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 82 HAQAMPLFISILRSGT-PLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSEST 139
A +P + +R + ++ A L+ + V+ +P + LL + S
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 140 DTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGAL 198
+ ++ A AL G ++ D + +V + + + N + T L
Sbjct: 188 EVKEQAIWAL-----GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS---LIRTATWTL 239
Query: 199 RNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSG 258
NLC K ++ + + + L+ S + +A ++ L ++I VID
Sbjct: 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
Query: 259 AVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECM 318
K LV+L+ + V+ A A+ + + + + V+ A +P L + +P +
Sbjct: 300 IPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN-- 356
Query: 319 QGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR----LAAPVADIIGALAYALMV 374
++ A ++NI G + + + + P L +A+
Sbjct: 357 -------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 375 FEQKSGVDDEPFDA---RQIEDILVMLLKPHDNKLVQERVLEAMASL 418
+ + L LL+ DN+ + E L+A+ ++
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 4e-20
Identities = 63/389 (16%), Positives = 135/389 (34%), Gaps = 28/389 (7%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
+P + L SD++ ++ A ++ + I + +G V L+ + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 148
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTA-RKSIPLLVDILRPIPDRPGAPPV-- 1197
L A L + + ++PL + +L G+ V
Sbjct: 149 LEAAW------------ALTNIASGTSAQTKVVVDADAVPLFIQLL-----YTGSVEVKE 191
Query: 1198 -AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIR 1256
A+ L + S + + + ++ + + + L +
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251
Query: 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAEN-IKDSDLAGQAVPPLVDMLSAA 1315
+ +L L +++ + A A+ L D + + + LV++LS
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 1316 SECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIM 1375
S AL A+ + +GN + ++ I+ +L +L +LSS K + I
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVV--INAGVLPALRLLLSSPKENIKKEACWTISNIT 369
Query: 1376 FGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL----DDEQQVELVEGYDV 1431
GN + I I + I PL+ L++ + A A + +
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKD 1460
+ L L+ ++R++E T+ AL + K
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENILKM 458
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 9e-19
Identities = 69/484 (14%), Positives = 159/484 (32%), Gaps = 75/484 (15%)
Query: 1293 ENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESL 1352
+ + Q +P + L++ E A V ++ S + + I ++ L
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVPRL 135
Query: 1353 YKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVC 1411
+ + N L+ AA L I G + + ++ + I L+ +
Sbjct: 136 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---------- 185
Query: 1412 AFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
+ + E + AL + D T + +++
Sbjct: 186 -------------------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQC 214
Query: 1472 GIIDNCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
++ L L PS + + L + S ++ + L ++ D
Sbjct: 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET- 273
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QE 1589
A A+ + + PQ + + ++ + L+ L S +Q + +++ +
Sbjct: 274 -LVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI---STSWPKAVADAGGIFEIAKV 1646
Q + + L L N+++ A + I +T +AV DA I + K+
Sbjct: 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV-------LVKMLHSTLESTITV 1699
+ + + + A +SN + + +V L +L I V
Sbjct: 392 LEVAEYK----TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447
Query: 1700 ALNAL-----------LIHERTDASSAEQMTQAGVIDALLDLLRSHQCE--ETSGRLLEA 1746
L+AL +A+ + +AG ++ + + ++ + E + +++E
Sbjct: 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507
Query: 1747 LFNN 1750
F
Sbjct: 508 YFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 1e-18
Identities = 72/418 (17%), Positives = 146/418 (34%), Gaps = 31/418 (7%)
Query: 1485 PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE 1544
S + +IL+ V P + ++ + Q A AL NI
Sbjct: 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVP 1603
+ T + + + + L + S +++ L ++ ++ + NA+ P
Sbjct: 161 GTSAQ-TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219
Query: 1604 LVQLAGIGILNLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWE 1660
++ L +L +TA L + P + + +AK+I D +
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE----TLV 275
Query: 1661 SAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIHERTDASSAE 1716
A +S + E V LV++L T AL A+ + +
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 1717 QMTQAGVIDALLDLLRSHQCE--ETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLL--- 1771
+ AGV+ AL LL S + + + + + + V + P LL
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQ 1831
+ +T+ E+ ++ + G L + + + R S + L LLE + V + AL+
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPD-IIRYLVSQGCIKPLCDLLEIADN-RIIEVTLDALE 453
Query: 1832 NFV-----------MCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN 1878
N + + N + +AGG+ + + N ++ +A + + F
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 1e-14
Identities = 64/400 (16%), Positives = 143/400 (35%), Gaps = 50/400 (12%)
Query: 1080 IIPALALLLRSDEVID-RFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
++P L +R ++ + AA A+ ++ SG+ + ++ AV I L+
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNI-ASGTSAQTKVVVDADAVPLFIQLLYT----- 184
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKS-------IPLLVDILRPIPDR 1191
EV + ++ + +V ST + + ++ + ++
Sbjct: 185 --------------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN--SNK 228
Query: 1192 PGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251
P A L+ + G + L L K + ++ + +
Sbjct: 229 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288
Query: 1252 PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF-DAENIKDSDLAGQAVPPLVD 1310
+ I+ + +L+ +L S + A RA+ + + + +P L
Sbjct: 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348
Query: 1311 MLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE 1370
+LS+ E + A + +T+GNT + + ID NL+ L K+L + + K+ A
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAV--IDANLIPPLVKLLEV-AEYKTKKEACW 405
Query: 1371 ----LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--------- 1417
II ++ CI+PL L++ + ++E + A E +L
Sbjct: 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 465
Query: 1418 ---DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCAL 1454
+ + + +E ++ + N ++ E +
Sbjct: 466 RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 7e-13
Identities = 53/331 (16%), Positives = 111/331 (33%), Gaps = 26/331 (7%)
Query: 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPCMRLLTSN 691
S + L + Q LNS + + Q A + S + + +V + + N
Sbjct: 83 SQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN 142
Query: 692 T-QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
+M+ ++A AL ++ T + + V I+L T S++ E A+ AL N
Sbjct: 143 QPEMLQLEAAWALTNIASGT---SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 751 LLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
+ D D VL + + + + + A+ L L + K
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-------KKPQPDW 252
Query: 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCC 869
VV + +L + + D ++ ++ L+ + LV
Sbjct: 253 SVVSQALPTLAKL-IYSMDTETLVDACWAISY----LSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 870 LAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALAD--RIMHSSSLEVRVGGA 927
L+ +Q A+ + + + A G L ++ S ++
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINA-----GVLPALRLLLSSPKENIKKEAC 362
Query: 928 ALLICAAKEHKKQSMDALDLSGYLKPLIYAL 958
+ + +Q + A+ + + PL+ L
Sbjct: 363 WTISNITAGNTEQ-IQAVIDANLIPPLVKLL 392
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 71/339 (20%), Positives = 120/339 (35%), Gaps = 49/339 (14%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A W L I+S V++A A+ L + + + + IW AL
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK-----EQAIW--AL------ 197
Query: 1067 QDANIVLSPATMR-------IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIA 1119
N+ R + + L S++ A +++L C G K
Sbjct: 198 --GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-CRGKKPQPDWSV 254
Query: 1120 NSGAVAGLITLIGHIESDTPNLV----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTAR 1175
S A+ L LI DT LV A+S +L P E + +
Sbjct: 255 VSQALPTLAKLIYS--MDTETLVDACWAIS---YLSDGPQEAIQAVI-----------DV 298
Query: 1176 KSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQD 1235
+ LV++L P A+R + IV G+D ++ AG L AL LS ++
Sbjct: 299 RIPKRLVELLSHESTLVQTP--ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356
Query: 1236 STEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL----FD 1291
+ + I N + I+ + + L+ +L + + A A+
Sbjct: 357 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416
Query: 1292 AENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKL 1330
+I ++ + PL D+L A +EV L AL +
Sbjct: 417 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-08
Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 13/232 (5%)
Query: 1774 QTRSESGKLLAALALGDLSQHEGLARASASVS--ACRALISLLEDQSTDEMKMVAICALQ 1831
+ +L A + + E + L+ + + + +++ A AL
Sbjct: 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 156
Query: 1832 NFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA-LLTKFLFSNHTLQEYVSNE-L 1889
N + + V +A + + +LL + + EV QA L + ++YV
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAA 1949
+ + + ++ TL + + +P L + S
Sbjct: 217 MEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET 273
Query: 1950 QGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERA 2001
+ L + QA+I L L+ A
Sbjct: 274 LVDACWAISYLSDG------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 80/490 (16%), Positives = 148/490 (30%), Gaps = 89/490 (18%)
Query: 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS- 753
+ A + + + ++ + + + + +A +LS
Sbjct: 58 FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFP--VGDVLKGNAQCR 809
V+ VV L + E E + A+ AL + V+ +A
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA--- 174
Query: 810 FVVLTLVDSLNAMDMNGTDVA-DALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868
V + L + +V A+ + +A G + Y + +EP++
Sbjct: 175 --VPLFIQLLYTGSV---EVKEQAIWALGNVA----GDSTDYRDYVLQCNA---MEPILG 222
Query: 869 CLAEGPPPLQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927
P L A LS LC G +P + S ++++S E V
Sbjct: 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPD----WSVVSQALPTLAKLIYSMDTETLVDAC 278
Query: 928 ALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
+ + + Q++ K L+ L S V+TP
Sbjct: 279 WAISYLSDGPQEAIQAVID---VRIPKRLVELL----------SHESTLVQTP------- 318
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
AL + I + V+ AG L AL L+S N
Sbjct: 319 ---------------------ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357
Query: 1046 QAEFEDTEGIW-ISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMA 1104
+ E W IS + Q ++ + +IP L LL E + A A++
Sbjct: 358 KK-----EACWTISNITAGNTEQIQAVIDA----NLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 1105 SLVCSGSK--GIILAIANSGAVAGLITLIGHIESDT--------PNLVALSEEFFLVRYP 1154
+ G + II + + G + L L+ ++ N++ + E R
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL 468
Query: 1155 DEVVLEKLFE 1164
+ E
Sbjct: 469 NINENADFIE 478
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-07
Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 24/387 (6%)
Query: 1633 AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL-RFNTEYYFKVPVVVLVKMLHS 1691
+ ++ + + DD SA + +L R + V +V L
Sbjct: 82 YSQLQQELPQMTQQLNSDDM----QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 137
Query: 1692 TLESTITV-----ALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA 1746
+ A AL ++ + + A + + LL + E + + A
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWA 196
Query: 1747 LFN----NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
L N + R + A+ P+ + S A L +L + + +
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLF---NSNKPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 1803 SVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
VS ++ L E + A A+ + +AV + + ELL +
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 1863 EVAGQAA-LLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
V A + + N + V N + L I +E T+ I
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAG 371
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
+ + IP LV L+ + + + N+ S + +++
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTK---KEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCL 2008
I L L++ E L +
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENI 455
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 1e-35
Identities = 82/474 (17%), Positives = 157/474 (33%), Gaps = 65/474 (13%)
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGD-SIPTVIDSGAVKALVQLVGQ 269
V+ IV ++S+N +Q A +L+ I +I +G + V +G+
Sbjct: 52 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 111
Query: 270 NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGH 329
+ ++ +A AL ++S + + KAVV +P I + +P +
Sbjct: 112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE---------Q 162
Query: 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDAR 389
A AL NI G A + + GA+
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKH--------------GAI--------------------- 187
Query: 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF-----LSQWVSHAEAKKVLIGLITMA 444
D L+ LL D + L + N+ + + L+ L+
Sbjct: 188 ---DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504
+V +++ L E + K+ + L+ LLG + A++ I +
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564
D+ + AG + LL ++ A + + +D V + G VP +
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQ---------LLALLLGDSPSSKAHVIKV 615
+L K Q +A A+T I L+ LL ++
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 616 LGHVLTMALQEDLVQKGSAA---NKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
+ ++ A + +K S GL + + NE + + +++ FS
Sbjct: 425 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 6e-28
Identities = 66/443 (14%), Positives = 142/443 (32%), Gaps = 35/443 (7%)
Query: 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL--YGNIFLSQWVSHAEAKKVLIG 439
++ +EDI+ + +N Q + +A L + A +
Sbjct: 50 SNQGTVNWSVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 107
Query: 440 LITMA-TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLI 498
+ + ++ +LT + +A+ I ISLL E AV +
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167
Query: 499 AILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-----KAREVAAHVLWILCCHSEDIRAC 553
+ + + G I PL+ LL L LC +
Sbjct: 168 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT--------INQLLALLLGDS 605
+P + LL P+ S A++ L + + QL+ LL
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665
++ +G+++T D + L +L + Q+ A ++++
Sbjct: 288 LPIVTPALRAIGNIVT---GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAE-G 724
+ RQD + +V + +L+ ++A A+ T T ++ Y+ G
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY---TSGGTVEQIVYLVHCG 401
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANLL-------SDPDIAAEVLLEDVVSALTRVLAEG 777
++PL+ L + + A++N+ ++ + + + +
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 461
Query: 778 TSEGKKNASRALHQLLKHFPVGD 800
K + + K+F V +
Sbjct: 462 NESVYKASLNLIE---KYFSVEE 481
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 2e-26
Identities = 69/495 (13%), Positives = 153/495 (30%), Gaps = 65/495 (13%)
Query: 103 NVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162
++ + + + + ++ + S + +++ A +A ++ S +
Sbjct: 35 DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLS---REKQP 91
Query: 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIV 222
+ + G++P L + +Q AL N+ +A ++ G + +
Sbjct: 92 PIDNIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 149
Query: 223 GLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN----DISVRAS 278
LL+S +A A L + VI GA+ L+ L+ + +
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
L L A +P L+ + E + + A++ +
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE---------VLADSCWAISYLT 260
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
G + + + G + LV L
Sbjct: 261 DGPNERIEMVVKK--------------GVVP------------------------QLVKL 282
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT 457
L + L A+ ++ G +Q V A A V L+T ++++ +++
Sbjct: 283 LG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAG 516
+ + + + L+ +L + + Q+ A I + + + G
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCC------HSEDIRACVESAGAVPAFLWLLKSG 570
I PL+ LL A K +V + + +E + +E G + L +
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 461
Query: 571 GPKGQDASAMALTKL 585
AS + K
Sbjct: 462 NESVYKASLNLIEKY 476
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 79/394 (20%), Positives = 136/394 (34%), Gaps = 31/394 (7%)
Query: 41 VAKFLEQLHANMSSPQERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPL 99
+ KF+ L + + + LT IA E + A+P FIS+L S
Sbjct: 102 IPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAV-VDGGAIPAFISLLASPHAH 158
Query: 100 AKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS 158
L + D R V+ G I PLL+LL T + L
Sbjct: 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218
Query: 159 DDHVGMKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG 217
+ E ++PTL L+ D V A+ L + ++ G
Sbjct: 219 RNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
V +V LL + + A + ++ + VID+GA+ L+ N +++
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQK 334
Query: 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337
A + +++ + VV VP L+G + + Q A A+ N
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK---------TQKEAAWAITNY 385
Query: 338 -YGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALM-VFEQKSGVDDEPFDARQI 391
GG +VYL L II + A+ +F+ + + + I
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Query: 392 E-----DILVMLLKPHDNKLVQERVLEAMASLYG 420
E D + L + H+N+ V + L + +
Sbjct: 446 EECGGLDKIEALQR-HENESVYKASLNLIEKYFS 478
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 8e-20
Identities = 69/424 (16%), Positives = 146/424 (34%), Gaps = 34/424 (8%)
Query: 1349 LESLYKILSSNSSLELKRNAAELCFIMF--GNAKIIANPIASECIQPLISLMQ-SDLSIV 1405
+E + K ++SN+ E + A + + I N I + I +S + +D S +
Sbjct: 59 VEDIVKGINSNNL-ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 1406 VESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPR 1464
+ A + +Q + V + + L++ + + E V AL + D +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 1465 KLQMVKAGIIDNCLDLL------PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPL 1518
+ ++K G ID L LL +A L + L + N + +I+ L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 1519 FMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLG 1578
+L D + + A+ + + P + + + V+ L+ L + I
Sbjct: 238 VRLLHHNDPEV--LADSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLGATELPIVTPA 294
Query: 1579 TELLTHLLA-QEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI---STSWPKAV 1634
+ +++ + Q + A+ L N+Q+ A + I + V
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 1635 ADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPV-----VVLVKML 1689
+ G + ++ + + AA ++N T V L+ +L
Sbjct: 355 VNHGLV----PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410
Query: 1690 HSTLESTITVALNALL------IHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRL 1743
+ I V L+A+ + + + G +D + L H+ E
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKAS 469
Query: 1744 LEAL 1747
L +
Sbjct: 470 LNLI 473
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 2e-19
Identities = 69/432 (15%), Positives = 147/432 (34%), Gaps = 49/432 (11%)
Query: 1074 SPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGH 1133
+ + + S+ + + A QA L+ + I I +G + ++ +G
Sbjct: 52 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 111
Query: 1134 IESDTPNLV-----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPI 1188
+D + AL+ + V++ +IP + +L
Sbjct: 112 --TDCSPIQFESAWALTNIASGTSEQTKAVVD--------------GGAIPAFISLLASP 155
Query: 1189 PDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEAT-------- 1240
AV L I + ++ + G +D L L++ +
Sbjct: 156 HAHISE--QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213
Query: 1241 ITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSD 1299
++ L R P L E L +L +L LH + A+ L +
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRL---LHHNDPEVLADSCWAISYLTDGPNERIEMV 270
Query: 1300 LAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSN 1359
+ VP LV +L A + AL A+ + +G + + ID L +L++
Sbjct: 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV--IDAGALAVFPSLLTNP 328
Query: 1360 SSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL- 1417
+ +++ A + I G I + + L+ ++ + A A
Sbjct: 329 KT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
Query: 1418 --DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGK------DRTPRKLQMV 1469
EQ V LV +++ L+ L+S + ++++ + A+ + + + + +
Sbjct: 388 GGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
Query: 1470 KAGIIDNCLDLL 1481
+ G +D L
Sbjct: 447 ECGGLDKIEALQ 458
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 1e-17
Identities = 60/349 (17%), Positives = 128/349 (36%), Gaps = 14/349 (4%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
IP V L D + LT I G+ + + G + A L+ +
Sbjct: 102 IPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR-----GARLSAARALHQLF-D 1291
E + L I +++ L+A+L + G + L L +
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 1292 AENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLES 1351
D Q +P LV +L L + A+ LT G + ++ + ++
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV--VKKGVVPQ 278
Query: 1352 LYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
L K+L + + L + A + I+ G + I + + SL+ + + + + A
Sbjct: 279 LVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 1411 CAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ-M 1468
+ + Q++ V + +V LV ++S + + + A+ T ++ +
Sbjct: 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVE 1516
V GII+ ++LL + + I + + I + + + + ++E
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 2e-15
Identities = 78/480 (16%), Positives = 154/480 (32%), Gaps = 81/480 (16%)
Query: 1417 LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDN 1476
+ D + + V D++ + S ++AT A L +++ P +++AG+I
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI-- 102
Query: 1477 CLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSAL 1536
P F+ L Q +
Sbjct: 103 ----------------------------------------PKFVSFLGKTDCSPIQFESA 122
Query: 1537 QALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDI 1595
AL NI T + I +S L SP I + L ++ F+ +
Sbjct: 123 WALTNIASGTSEQ-TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 1596 TTKNAVVPLVQLAGIGILNLQQTAVKA--------LEKISTSWPKAVADAGGIFEIAKVI 1647
A+ PL+ L + L+ L + P A + + +++
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 1648 IQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV-------LVKMLHSTLESTITVA 1700
+DP+ + + +S + E ++ +VV LVK+L +T +T A
Sbjct: 242 HHNDPE----VLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 1701 LNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQ---CEETSGRLLEALFNNGRIRQMK 1757
L A+ +++ AG + LL + + +E + + Q
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 1758 VSKYAIAPLSQYLL--DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLE 1815
V+ + L L D +T+ E+ + G + L++LL
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLLS 411
Query: 1816 DQSTDEMKMVAICALQNFVMC------SRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ T ++ V + A+ N + + E GG+ ++ L N V +
Sbjct: 412 AKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 6e-15
Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 26/403 (6%)
Query: 1365 KRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQ 1422
+ + ++ ++ + S+ A A +LL + +
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 1423 VELVEGYDVVDLLVR-LVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL 1481
++ + ++ V L + + AL + + + +V G I + LL
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 1482 P-VAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS---LWGQHSALQ 1537
+ L I + SA ++PL +L PD S +
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212
Query: 1538 ALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITT 1597
L N+ L Q++ L+ L + +++L + + ++
Sbjct: 213 TLSNLCRNKNPAPPLDAV-EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 271
Query: 1598 KNAVVP-LVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQ 1653
K VVP LV+L G L + A++A+ I T + V DAG + ++
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT- 330
Query: 1654 PPHSLWESAALVLSNVLRFNTEYYFKV-------PVVVLVKMLHSTLESTITVALNALLI 1706
++ + A +SN+ + +V +V ++ + A+
Sbjct: 331 ---NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN 1749
+ G+I+ L++LL + + +L+A+ N
Sbjct: 388 G--GTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISN 427
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 63/336 (18%), Positives = 116/336 (34%), Gaps = 40/336 (11%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
+ W L I+S V++ GA+ A LAS + L +
Sbjct: 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---------PHAHISEQAVWALGNIA 171
Query: 1067 QD----ANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSG 1122
D ++V+ I L LL ++ + S
Sbjct: 172 GDGSAFRDLVIK---HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 1123 AVAGLI-TLIGHIESDTPNLV-----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK 1176
AV ++ TL+ + + P ++ A+S L P+E ++ + V
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISY---LTDGPNE----RIEMVVKKGV------ 275
Query: 1177 SIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDS 1236
+P LV +L + P P A+R + IV G+D + +AG L L+ +
Sbjct: 276 -VPQLVKLLGA-TELPIVTP-ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 1237 TEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIK 1296
+ + I D I+ + + L+ VL + AA A+ ++
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 1297 DSDLAGQ--AVPPLVDMLSAASECELEVALVALVKL 1330
+ PL+++LSA ++V L A+ +
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-09
Identities = 60/373 (16%), Positives = 121/373 (32%), Gaps = 54/373 (14%)
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPC 684
D+ N + +V+ +NS+N E+Q A L S +Q ++ ++
Sbjct: 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 105
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
+ L ++ + +SA AL ++ T +T + A + I L + +E
Sbjct: 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQ 162
Query: 744 AVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKK-----NASRALHQLLKHFP 797
AV AL N+ D V+ + L +LA N + L L ++
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222
Query: 798 VGDVLKGNAQCRFVVLTLVDSLNAMDMNG-TDVADAL---------------------EV 835
L Q + TLV L+ D D A+ ++
Sbjct: 223 PAPPLDAVEQI---LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 836 VALLARTKQGLNFTYPPWAALAEVPSS-------------IEPLVCCLAEGPPPLQDKAI 882
V LL T+ + P A+ + + + L +Q +A
Sbjct: 280 VKLLGATELPIV--TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 883 EILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSM 942
+S + + + + + ++ + + + A + + +
Sbjct: 338 WTMSNITAGRQDQI---QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
Query: 943 DALDLSGYLKPLI 955
L G ++PL+
Sbjct: 395 VYLVHCGIIEPLM 407
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 65/445 (14%), Positives = 124/445 (27%), Gaps = 61/445 (13%)
Query: 1587 AQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP----KAVADAGGIFE 1642
+ T +V +V+ L Q A +A K+ + + AG I +
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 104
Query: 1643 IAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTIT 1698
+ + D P + +A L+N+ +E V + + +L S
Sbjct: 105 FVSFLGKTDCSP---IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 1699 VALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKV 1758
A+ AL ++ + + + G ID LL LL
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP------------------------ 197
Query: 1759 SKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQS 1818
D T + L +L +++ A +V + L +
Sbjct: 198 -------------DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 1819 TDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLF-- 1876
E+ + A+ V + G + + +LL +T + A +
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 1877 SNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIP 1936
++ Q+ + + + L I +E T+ I +P
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 1937 HLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPS 1996
LVG L Q + T V + ++ I L L+
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNY-----TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 1997 FHERADSLLHCLPGCLTVTIKRGNN 2021
+ L + K G
Sbjct: 417 IIQVI---LDAISNIFQAAEKLGET 438
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-07
Identities = 66/447 (14%), Positives = 138/447 (30%), Gaps = 74/447 (16%)
Query: 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIA 758
LG V+ ++K ++++++ A A LLS
Sbjct: 34 PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93
Query: 759 AEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVD 817
++ ++ L + + ++ AL + + + +
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFIS 150
Query: 818 SLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPL 877
L + + A+ + +A + L +I+PL+ LA
Sbjct: 151 LLASPHAH--ISEQAVWALGNIAGDG-------SAFRDLVIKHGAIDPLLALLAVPDLST 201
Query: 878 QDKAIE-----ILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931
LS LC PA D + + L R++H + EV + I
Sbjct: 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAV---EQILPTLV-RLLHHNDPEVLA-DSCWAI 256
Query: 932 CAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEAD 991
+ + ++ + G + L+ L + ++ + TP
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKLL----------GATELPIVTP------------- 293
Query: 992 DFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051
AL + I + V++AGAL L + +N Q
Sbjct: 294 ---------------ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK---- 334
Query: 1052 TEGIW-ISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
E W +S + Q +V ++P L +L + + AA A+ + G
Sbjct: 335 -EATWTMSNITAGRQDQIQQVV----NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESD 1137
+ I+ + + G + L+ L+ ++
Sbjct: 390 TVEQIVYLVHCGIIEPLMNLLSAKDTK 416
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 1e-34
Identities = 114/776 (14%), Positives = 236/776 (30%), Gaps = 100/776 (12%)
Query: 101 KVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-------------- 146
+ A L VL K++ + CI + SL K E
Sbjct: 25 RRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84
Query: 147 --------------------------------EALYEVSSGGLSDDHVGMKIFVTE---- 170
+ + SG + +
Sbjct: 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNR 144
Query: 171 ---GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS 227
++ L + + G + RN+ + +E G+ ++ + S
Sbjct: 145 EIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSE 204
Query: 228 DNAAA-----------QSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVR 276
+ A+ LAR+ + + ++ D+ +
Sbjct: 205 LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESK 264
Query: 277 ASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQ---GHATRA 333
A+ AL + + VVA +G+ +I A+ E Q + L +A
Sbjct: 265 VRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKA 324
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
A G+ L + R+ A V + + + E
Sbjct: 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ---DAAIRPFGDGAALKLAEA 381
Query: 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW-VSHAEAKKVLIGLITMATADVREYL 452
L+KP +K ++ + +A L + + + + L+ L +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGV 441
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512
+ + LC + E I+L E+H+ V + ++ +
Sbjct: 442 VTTFVNLCN---AYEKQEMLPEMIELAKFAKQHIPEEHELDDV-------DFINKRITVL 491
Query: 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572
G L L + S ++E+ A VL + C +++R V G V A L + G
Sbjct: 492 ANEGITTALCALAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTE 550
Query: 573 KGQDASAMALTKLIRAADSAT----------INQLLALLLGDSPSSKAHVIKVLGHVLTM 622
KG+ + AL ++ + I LL LL + + L + +
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL--QQDCTALENFESLMALTNL 608
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
A + V++ +G+ + L + AA L +L I ++ V
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
Query: 683 PCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE 742
L + AT A AL ++ + ++ + L L S
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILA--IASWLDILHTLIANPSPAVQH 726
Query: 743 TAVAALANLLSDPDIAAEVLLE----DVVSALTRVLAEGTSEGKKNASRALHQLLK 794
+ + N+++ + A+ L E +++S L ++ + ++ ++ A++ L +
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-32
Identities = 121/824 (14%), Positives = 271/824 (32%), Gaps = 100/824 (12%)
Query: 1236 STEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENI 1295
T + ++ + F I + ++ N L+ VL GA L+
Sbjct: 3 KTSTKVKQMMDLTFDLATPI--DKRRAAANNLV-VLAKEQTGAE--------LLYK---- 47
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEV-ALVALVKLTSGNTSKACLLTDIDGNLLESLYK 1354
+ + + + ++ V + + L + + + G + +
Sbjct: 48 ------DHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELG--VPWFMR 99
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
+L E + A+ C NA ++ +P L + +++ +
Sbjct: 100 VLDQKH--ENCVSTAQFCLQTILNA--LSGLKNKPDSKPDKELCT-RNNREIDTLLTCLV 154
Query: 1415 RLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
+ D V++L+ R V T E V + R +L V + +
Sbjct: 155 YSITDRTISGAARDG-VIELITRNVHYTALEWAERLV-------EIRGLCRLLDVCSELE 206
Query: 1475 DN-CLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
D + + S+ L RI N + ++ L + +
Sbjct: 207 DYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLL-APDMESKV 265
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQ 1593
A+ +L P + + +++ +L+ + Q++ E L +++ +
Sbjct: 266 RVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK 325
Query: 1594 DITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADA----GGIFEIAKVIIQ 1649
+ + V L +L ++ A+ L K+ + + A G ++A+ +
Sbjct: 326 ALC-EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384
Query: 1650 -----------------------DDPQPPHSLWESAALV--LSNVLRFNTEYYFKVPVVV 1684
D + L E A + L ++ R + V
Sbjct: 385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444
Query: 1685 LVKMLHSTLESTITVALNALLI---------HERTDASSAEQ----MTQAGVIDALLDLL 1731
V + ++ + + + L HE D + + G+ AL L
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504
Query: 1732 R--SHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALG 1789
+ SH +E R+L A+ +R V + + L + L+ +E GK A AL
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG---TEKGKRHATQALA 561
Query: 1790 DLSQH---EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
+ E S+ R L++LL+ T ++ AL N + + R+ + +
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYV--SNELIRSLTAALERELWST 1904
G+ ++ L+ + + AA L + + + +N+ ++ L E E T
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 1905 ATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSW 1964
AT L + + + + + A+ + L + + S A Q + + + N+
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIANPSPAVQHRGIVIILNMINA- 738
Query: 1965 STMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
++ + + + +L L + + + + CL
Sbjct: 739 -----GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 132 bits (332), Expect = 4e-31
Identities = 103/722 (14%), Positives = 213/722 (29%), Gaps = 62/722 (8%)
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
+ + + L D + + + AL S++ K V+ GVP + +
Sbjct: 45 LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQK 104
Query: 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALM 373
+ C+ + + + N G+ + R + ++ L Y++
Sbjct: 105 HENCVSTAQ------FCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSI- 157
Query: 374 VFEQKSGVDDEPFDARQIEDILVMLLK--PHDNKLVQERVLEAMASLYGNIFLSQWVSHA 431
D + ++ ++ + + ER++E G L S
Sbjct: 158 --------TDRTISGAARDGVIELITRNVHYTALEWAERLVEIR----GLCRLLDVCSEL 205
Query: 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ-LLISLLGLSSEQH 490
E K + T + L ++ + I + L +
Sbjct: 206 EDYKYESAMDI--TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMES 263
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
+ I L D + A GI ++ + + ++ A I +D
Sbjct: 264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL------------IRAADSATINQLL 598
+ G V L S + + + L KL + + +
Sbjct: 324 AKALCEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEAC 382
Query: 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658
L K + + L + +K + +L+ + N+
Sbjct: 383 RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVV 442
Query: 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718
+ +L C + E++ + L Q + +
Sbjct: 443 TTFVNL-------CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK------RIT 489
Query: 719 SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778
EG L LAKT S ++ E L + ++ +V+ E V AL R+ EGT
Sbjct: 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT 549
Query: 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838
+GK++A++AL ++ G + V+ L++ L D + ++L +
Sbjct: 550 EKGKRHATQALARIGITINPEVSFSG-QRSLDVIRPLLNLLQQ-DCTALENFESLMALTN 607
Query: 839 LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGD 898
LA + + + + L E L A + L L + +
Sbjct: 608 LASMNESV-------RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI--K 658
Query: 899 FLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYAL 958
+ + LA + E A L K L ++ +L L +
Sbjct: 659 MFEGNNDRVKFLA-LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 959 VD 960
+
Sbjct: 718 AN 719
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 129 bits (324), Expect = 4e-30
Identities = 85/612 (13%), Positives = 172/612 (28%), Gaps = 65/612 (10%)
Query: 20 SQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAK------- 72
S+ + SAMD S+ + + L +++ NM + + T +I K K
Sbjct: 203 SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDME 262
Query: 73 ----------------KEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED 116
+ + + + + +++ + L + L +D
Sbjct: 263 SKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD 322
Query: 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTL 176
K L + L L S++ R A L ++ S G D + +
Sbjct: 323 KA-KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381
Query: 177 WDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNA 236
+ K +D ++ + L L D + + + + ++ L N +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGV 441
Query: 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296
+ L + L +++ L+ + + +
Sbjct: 442 VTTFVNL----------CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR-ITV 490
Query: 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI------------YGGMPAL 344
+ L S Q R L + GG+ AL
Sbjct: 491 LANEGITTALCALAKTESHNS---------QELIARVLNAVCGLKELRGKVVQEGGVKAL 541
Query: 345 VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404
+ E ++ + A A A + V + + L+ LL+
Sbjct: 542 LRMALEGTEKGKRHA-------TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594
Query: 405 KLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE 463
L L A+ +L N + Q + + + + + L L E
Sbjct: 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654
Query: 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLV 522
I G + ++ L L E+ +AI+T I A A + L
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714
Query: 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL 582
L+ S + ++ + E+I + + L + A +A
Sbjct: 715 TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774
Query: 583 TKLIRAADSATI 594
L A I
Sbjct: 775 QCLAAAERYRII 786
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-12
Identities = 108/930 (11%), Positives = 259/930 (27%), Gaps = 148/930 (15%)
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAA-HVLWILC 544
+ + A + +L ++ ++ + I + L + + V H++ LC
Sbjct: 20 TPIDKRRAAANNLVVLAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+S + V + VP F+ +L + L ++ A
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
+ + +L ++ + G+A + + + + ++ + E E V
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTI--SGAARDGVIELITRNVHYTALEWAE--RLVEIRG 194
Query: 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724
D+C L ++ +T ++ +A+ L + +
Sbjct: 195 LCRLLDVCSEL--EDYKYESAMDITGSSSTIASV---CLARIYENMYYDEAKAR--FTDQ 247
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLED-VVSALTRVLAEGTSEGK 782
+ + +++ A+ LL+ D+ +V+ + ++ + + +
Sbjct: 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL--LA 840
+ A L + + + VD L + + D +V L L
Sbjct: 308 RVACECLIAASSK---------KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLG 358
Query: 841 RTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFL 900
P A + ++ A + L+ L D + L
Sbjct: 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK--EKL 416
Query: 901 MARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960
+ +SI AL D + + + K++ + + L
Sbjct: 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM----------IELAK 466
Query: 961 MMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRN 1020
KQ+ E + D D F+
Sbjct: 467 FAKQHIP---------------------EEHELDDVD-------------------FINK 486
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRI 1080
+ G AL + + N Q I+ + A+
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQE--------LIARVLNAVCGLKELRGKV-VQEGG 537
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
+ AL + + A QA+A + + + + +
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFS----------------------- 574
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR 1200
G + I L+++L+ +
Sbjct: 575 ------------------------------GQRSLDVIRPLLNLLQQDCTALENFESLMA 604
Query: 1201 LLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEAS 1260
L T + +++ + + + G+ + YL T A L ++ S + +E +
Sbjct: 605 L-TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 1261 LSSLNQLIAVLHLGSRGARLSAARALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASEC 1318
+ L + + A AL + + + + L +++ S
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723
Query: 1319 ELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL-SSNSSLELKRNAAELCFIMFG 1377
+V ++ + + A L + +++E L + + + R A C
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKL--FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781
Query: 1378 NAKIIANPIASECIQPLISLMQSDLSIVVE 1407
+II + P + S +S +++
Sbjct: 782 RYRIIER--SDNAEIPDVFAENSKISEIID 809
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-33
Identities = 72/463 (15%), Positives = 134/463 (28%), Gaps = 49/463 (10%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G IP + L S+ + A + D+ +++ G + L D L
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVY-QLGGICKLVDLLRSP 56
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLAR 242
N+ VQ GALRNL T G+ V LL + NA Q LL
Sbjct: 57 NQN---VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW- 112
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLV---------------GQNNDISVRASAADALEALS 287
L+ D + + + A+ L V + D V +A L LS
Sbjct: 113 -NLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS 171
Query: 288 SKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALA-NIYGGMPALVV 346
S + + + L+ + + L+ + +P
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231
Query: 347 YLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI--------LVML 398
L +++ + +M + +E + + + + L
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Query: 399 LKPHDNKLVQERVLEAMASL------YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
+ E A+ +L + + + L+ +DV
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS------SEQHQEYAVQLIAILTEQVD 506
L+ + R + +G + + LL SE A + L
Sbjct: 352 ASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
Query: 507 DSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSE 548
++ + ++ L + S KA E A +L + E
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 7e-30
Identities = 68/438 (15%), Positives = 141/438 (32%), Gaps = 42/438 (9%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
QD Q +++ C + + + GG+ +V LL S N Q AA L L+
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
+ ++ V L+ + + ++ L LS S K + AD +PV
Sbjct: 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS--STDELKEELIADALPV 131
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI-------------YGGMPALV 345
L ++ P G + + +AT L N+ G + +L+
Sbjct: 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK----- 400
Y+ + R + + + L +
Sbjct: 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251
Query: 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD-VREYLILSLTKL 459
+K++ + N S W+ H++A + + L+ + D E +L L
Sbjct: 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311
Query: 460 CRREVGIWE-----AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
+ + K +G+ + LL + L++ ++ +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMG 369
Query: 515 AGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
P + +LL + S+ A + + L + S+ + + L +
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 569 SGG-PKGQDASAMALTKL 585
S PK +A+ + L+ +
Sbjct: 430 SSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 7e-18
Identities = 54/359 (15%), Positives = 104/359 (28%), Gaps = 40/359 (11%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
I + L E++Q I Q + +K + GGI LV LL + +Q ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKL------IRA 588
AA L L S + + + LL ++G + Q L L
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 589 ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV-------------QKGSAA 635
+ + L ++ + V+ + + Q
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
+ + SL+ + + ++ SV + + ++ L + +
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVL-HNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 696 ATQSARALGALSRPTKTKTT------------NKMSYIAEGDVKPLIKLAKTSSIDA-AE 742
S S ++ + L S DA E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 743 TAVAALANL------LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
AL NL +S L E + + R+L G S+ ++ + L + +H
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 2e-17
Identities = 64/468 (13%), Positives = 138/468 (29%), Gaps = 35/468 (7%)
Query: 215 AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
+ V LSS + Q+ A + + V G + LV L+ ++ + +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQN 59
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
V+ +AA AL L +S K +G+ + + + Q T L
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI--------QKQLTGLL 111
Query: 335 ANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394
N+ + + L +I + S +P
Sbjct: 112 WNLSSTDELKEELI-----ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166
Query: 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454
L L + R + + + K + + +
Sbjct: 167 LRNLSSADAGR-QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
T+ + E A ++ + + + + + +
Sbjct: 226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK----GSGWLYH 281
Query: 515 AGGIPPLVQLLEAGSQKA-REVAAHVLWILCCH-----SEDIRACVESAGAVPAFLWLLK 568
+ I + L+ + A E A L L S + +P LL+
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341
Query: 569 SGGPKGQDASAMALT---------KLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV 619
SG + A L+ +++ + +LL G++ +S+ + V
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN-QEYAASVLADLFS 666
+ + + K ++ L +++ + SS E A +L+D++S
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 7e-14
Identities = 66/449 (14%), Positives = 135/449 (30%), Gaps = 54/449 (12%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
I + +L S Q +G + H Q E +Q + + LV L N+QQ
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1619 AVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNT- 1674
A AL + GI E ++ + + + +L N+ +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT---GNAEIQKQLTGLLWNLSSTDEL 120
Query: 1675 -EYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDA-----------SSAEQ----- 1717
E + VL + N + SSA+
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 1718 MTQAGVIDALLDLLRSHQCEETSG-RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTR 1776
+G+ID+L+ +++ + +E ++ Q + +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 1777 SESGKLLAA--------------LALGDLSQHEGLARASASVSACRALISLLEDQSTDEM 1822
L + + + A R ++L+ D
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 1823 KMVAICALQNFVMCSRT-----NRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877
ALQN ++ + G+ + LL S N++V A L +
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360
Query: 1878 NHTLQEYVSNELIRSLTAALEREL---WSTATINEEVLRTLHVIFMNFPKLHTSEAATLC 1934
+ L + N++ +T L ++ I T+ + + P+L ++
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420
Query: 1935 IPHLVGALKSGS-----EAAQGSVLDTLC 1958
+ +++ +S + EAA +L +
Sbjct: 421 LNNIINLCRSSASPKAAEAA-RLLLSDMW 448
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-13
Identities = 63/466 (13%), Positives = 142/466 (30%), Gaps = 46/466 (9%)
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG 574
IP VQ L + +K + + A+ + C E + V G + + LL+S
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 575 QDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634
Q A+A AL L+ + + N+L + +L +Q+ L
Sbjct: 61 QQAAAGALRNLVFRSTT---NKLETRRQNGIRE----AVSLLRRTGNAEIQKQLTG---- 109
Query: 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM 694
L+ L+S++E +E A L L + I + + R +
Sbjct: 110 -------LLWNLSSTDELKEELIADALPVL--ADRVIIPFSGWCDGNSNMSREVVDPE-- 158
Query: 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754
V + L LS + + + + + + + A+ ++ N +
Sbjct: 159 VFFNATGCLRNLS----SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214
Query: 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGD-------VLKGNAQ 807
+ L +V + ++ + + +S + + + N +
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274
Query: 808 CRF------VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPS 861
+ T ++ + + T A A AL T + +
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAG---ALQNLTASKGLMSSGMSQLIGLKEK 331
Query: 862 SIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLE 921
+ + L G + +LS + L ++S+ E
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391
Query: 922 VRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSS 967
+ A + + Q S ++ ++++ + ++S
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSS----MLNNIINLCRSSAS 433
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 2e-12
Identities = 65/444 (14%), Positives = 126/444 (28%), Gaps = 43/444 (9%)
Query: 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698
+ VQ L+S +E+ Q A + + + + + LL S Q V
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDPDI 757
+A AL L TTNK+ + ++ + L +T + + + L NL S D
Sbjct: 64 AAGALRNLV---FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTDE 119
Query: 758 AAEVLLEDVVSALTRVLAEGTS----------------EGKKNASRALHQLLKHFPVGDV 801
E L+ D + L + S E NA+ L L
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA---DAG 176
Query: 802 LKGNAQCRFVVLTLVDSLNAMDMNGTDVADALE--VVALLARTKQGLNFTYPPWAALAEV 859
+ ++ +L+ + ++E + L + + + L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236
Query: 860 PSSIEPLVCCL-AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSS 918
+ + L ++ G + S +I + + S
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296
Query: 919 SLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQ-------------- 964
A L S L G + + + +++
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356
Query: 965 NSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVT 1024
N S L V + + E T + + + IL A + + + +
Sbjct: 357 NMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS--ACYTVRNLMASQPQLAKQ 414
Query: 1025 VMEAGALEALSDKLASYTSNPQAE 1048
+ L + + S S AE
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAE 438
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-10
Identities = 66/487 (13%), Positives = 141/487 (28%), Gaps = 58/487 (11%)
Query: 1391 IQPLISLMQSDLSIVVESAVCAFERL--LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVE 1448
I + + S + D+ + ++ + + LV L+ N + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQ 62
Query: 1449 ATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARS 1508
A AL L T KL+ + I + LL + AE+ + LT S
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLL------RRTGNAEIQKQLTGLLWNLSS 116
Query: 1509 SDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLE 1568
+D K L+ AL L + + P S + E
Sbjct: 117 TDELK------EELIAD---------ALPVLADRVIIPFSGWCDGNSNMS--------RE 153
Query: 1569 SPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVP-LVQLAGIGILNLQQTAVKALEKIS 1627
+ T L +L + + +Q + + ++ L+ + + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 1628 TSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVK 1687
+ + + + + + + N Y +P
Sbjct: 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273
Query: 1688 MLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEAL 1747
L + + L+ S + T AL +L S + L L
Sbjct: 274 KGSGWLYHSDAIRTYLNLM-----GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 1748 FNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSAC 1807
G + +++ L Q+ + A L ++S+H L
Sbjct: 329 KEKG-----------LPQIARLL---QSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVF 373
Query: 1808 RALISLLED-----QSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
+ LL +++++ A ++N + + + + + L S+ +
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433
Query: 1863 EVAGQAA 1869
A +AA
Sbjct: 434 PKAAEAA 440
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 58/494 (11%), Positives = 140/494 (28%), Gaps = 81/494 (16%)
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSS 1361
G +P V LS+ E + + + S + + G + L +L S +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG--ICKLVDLLRSPNQ 58
Query: 1362 LELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--D 1418
+++ AA L ++F + I+ +SL++ + ++ + L
Sbjct: 59 -NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117
Query: 1419 DEQQVELVEGY--DVVDLLVRLVSG------------TNHRLVEATVCALIKLGKDRTPR 1464
DE + EL+ + D ++ SG + + L L R
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177
Query: 1465 KLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQ 1524
+ +G+ID+ + + +A + + ++ DA +
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237
Query: 1525 PD--------------FSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESP 1570
+ ++ L P+ L S I L+ +
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG--WLYHSDAIRTYLNLMGKS 295
Query: 1571 SHAIQQLGTELLTHLLAQEHFQQDITTKNAVV-------PLVQLAGIGILNLQQTAVKAL 1623
L + + +L G ++ ++ L
Sbjct: 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355
Query: 1624 EKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV 1683
+S + ++ + P ++
Sbjct: 356 SNMSRH------------PLLHRVMGNQVFPEV-----------------------TRLL 380
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE---ETS 1740
S E ++ A + + A+Q + +++ +++L RS E +
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 1741 GRLLEALFNNGRIR 1754
LL ++++ ++
Sbjct: 441 RLLLSDMWSSKELQ 454
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 8e-09
Identities = 63/503 (12%), Positives = 128/503 (25%), Gaps = 100/503 (19%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
IP L S + + A + C + + G + L+ L+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRS------- 55
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR 1200
P++ V + A
Sbjct: 56 -------------PNQNVQQA------------------------------------AAG 66
Query: 1201 LLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY--E 1258
L +V S TNKL G+ L + + +T L L S +L
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 1259 ASLSSLNQLIAVLHLGSRGARLS-------------AARALHQL-FDAENIKDSDLAGQA 1304
+L L + + G + A L L +
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186
Query: 1305 VPPLVDMLSAASECE------LEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS 1358
+ L+ + +E + L L+ ++ + Y SS
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246
Query: 1359 N------SSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQ-SDLSIVVESAVC 1411
S + N N K S+ I+ ++LM S +E+
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306
Query: 1412 AFERL------LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRK 1465
A + L + + + + RL+ N +V + L + +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH 365
Query: 1466 LQMVKAGIIDNCLDLLPVAPS------ALCSTIAELFRILTNSSAIARSSDAAKIVEPLF 1519
M + L + L S + ++ + +A+ ++ ++ +
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425
Query: 1520 MVLLQPDFSLWGQHSALQALVNI 1542
+ +A L ++
Sbjct: 426 NLCRSSASPK-AAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 82 HAQAMPLFISILRSGT-PLAKVNVAATLSVLCK------DEDLRLKVLLGGCIPPLLSLL 134
H+ A+ +++++ A L L +L L +P + LL
Sbjct: 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL 340
Query: 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL---NPKNKQDNVVQ 191
+S ++D ++ A L +S H + + V P + L +
Sbjct: 341 QSGNSDVVRSGASLLSNMSR------HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394
Query: 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLARL 243
+RNL + + + ++ I+ L SS + A A LL+ +
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-06
Identities = 65/466 (13%), Positives = 143/466 (30%), Gaps = 34/466 (7%)
Query: 1219 AGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGA 1278
+ +YLS + + F + + L + +L+ +L ++
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 1279 RLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECEL-EVALVALVKLTSGNTS 1336
+ +AA AL L F + K + V +L E+ + L L+S +
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLIS 1396
K L+ D L + + S + + +F N A+ C++ L S
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN--------ATGCLRNLSS 172
Query: 1397 LMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIK 1456
++ S + V+ + ++ ++RL +
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232
Query: 1457 LGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVE 1516
L + + G N D + + + E S + S +
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKM--MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290
Query: 1517 PLFMVLLQPDFSLWGQHSALQALVNI----LEKPQSLVTLKLTPSQVIEPLLSFLESPSH 1572
L+ + AL N+ + L + + + L+S +
Sbjct: 291 -----LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345
Query: 1573 AIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN------LQQTAVKALEKI 1626
+ + G LL+++ + + + +L N + +A + +
Sbjct: 346 DVVRSGASLLSNMSRHPLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404
Query: 1627 STSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNV 1669
S P K + + I + + P + E+A L+LS++
Sbjct: 405 MASQPQLAKQYFSSSMLNNI--INLCRSSASPKA-AEAARLLLSDM 447
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-33
Identities = 73/492 (14%), Positives = 160/492 (32%), Gaps = 70/492 (14%)
Query: 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIP--- 252
GA+ + ++ ++ S + Q +A R +L+ + P
Sbjct: 1 GAM-GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKF-RKLLSKEPNPPIDE 58
Query: 253 TVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312
+ G V V+ + + + +++ +A L ++S + + V+ A VP+ I + +
Sbjct: 59 VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS 118
Query: 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYAL 372
++ +Q A AL NI G Y+ + L
Sbjct: 119 EFED---------VQEQAVWALGNIAGDSTMCRDYVLDC--------------NIL---- 151
Query: 373 MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA 431
L+ L + + + A+++L G ++ +
Sbjct: 152 --------------------PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191
Query: 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQ 491
VL L+ ++ DV +L+ L +A+ + L+ LL + +
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
A++ + + D I + L+ LL + + ++ A + + +
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQ---------LLALLL 602
V A PA + +L++ + + +A A+T + I L LL
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT 371
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN--------KGLRSLVQVLNSSNEENQ 654
+ L ++L + QE GL + + + N+E
Sbjct: 372 VMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIY 431
Query: 655 EYAASVLADLFS 666
+ A ++ F
Sbjct: 432 QKAFDLIEHYFG 443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 8e-32
Identities = 77/468 (16%), Positives = 159/468 (33%), Gaps = 55/468 (11%)
Query: 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165
+ + G ++ ++ S+S + + +A + ++ S + +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID--E 58
Query: 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225
+ T GVV + L K K++ +Q L N+ R ++AG V I + LL
Sbjct: 59 VISTPGVVARFVEFL--KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116
Query: 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEA 285
SS+ Q A L + V+D + L+QL + N +++ +A AL
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345
L + + + VL + + + A AL+ + G +
Sbjct: 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD---------VLADACWALSYLSDGPNDKI 227
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
+ + A + LV LL H++
Sbjct: 228 QAVID-----------AGVC---------------------------RRLVELLM-HNDY 248
Query: 406 LVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV 464
V L A+ ++ G+ +Q + + A + L+ L++ +++ +++ +
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308
Query: 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAGGIPPLVQ 523
+ + LIS+L + + ++ A I + + + G I PL
Sbjct: 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368
Query: 524 LLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG 571
LL K +VA + L + E G P + ++ G
Sbjct: 369 LLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYG 415
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 1e-27
Identities = 60/415 (14%), Positives = 142/415 (34%), Gaps = 28/415 (6%)
Query: 395 LVMLLKPHDNKLVQERVLEA---MASLYGNIFLSQWVSHAEAKKVLIGLITMAT-ADVRE 450
++ ++ + Q + + S N + + +S + + ++
Sbjct: 25 MIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
LT + + + + + I LL E QE AV + + +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 511 AITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569
+ +PPL+QL ++ A L LC + + + WLL
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 570 GGPKGQDASAMALTKLIRAADSAT--------INQLLALLLGDSPSSKAHVIKVLGHVLT 621
+ AL+ L + +L+ LL+ + + ++ +G+++T
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263
Query: 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIV 681
+D+ + L+SL+ +L+S E ++ A ++++ + + ++ I
Sbjct: 264 ---GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320
Query: 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAE-GDVKPLIKLAKTSSIDA 740
+ +L + ++A A+ + + ++ Y+ E G +KPL L
Sbjct: 321 PALISILQTAEFRTRKEAAWAITNATS---GGSAEQIKYLVELGCIKPLCDLLTVMDSKI 377
Query: 741 AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
+ A+ L N+L + A+ + + + + L H
Sbjct: 378 VQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD-------KIEFLQSH 425
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 68/394 (17%), Positives = 136/394 (34%), Gaps = 44/394 (11%)
Query: 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLA 100
VA+F+E L + + + IA ++ A A+P+FI +L S
Sbjct: 66 VARFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSEFEDV 123
Query: 101 KVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDT-RKAAAEALYEVSSGGLS 158
+ L + D R VL +PPLL L ++ T + A AL + G
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG--- 180
Query: 159 DDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGV 218
+ + L L D V AL L + +A ++AG
Sbjct: 181 -KSPPPEFAKVSPCLNVLSWLL---FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 219 DIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRAS 278
+V LL ++ S A + ++ +++ A+++L+ L+ + S++
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKE 295
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI- 337
A + +++ + + V+ A+ P LI + + A A+ N
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT---------RKEAAWAITNAT 346
Query: 338 -------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384
G + L L ++ + + + +++G
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLT--VMDSKIVQVALNGLENILRLGEQEAKRNGTGIN 404
Query: 385 PFDARQIE-----DILVMLLKPHDNKLVQERVLE 413
P+ IE D + L H+N+ + ++ +
Sbjct: 405 PY-CALIEEAYGLDKIEFLQS-HENQEIYQKAFD 436
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 4e-20
Identities = 61/340 (17%), Positives = 118/340 (34%), Gaps = 8/340 (2%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+ V+ L+ + + +LT I G+ I+ +AG + + LS +D
Sbjct: 66 VARFVEFLK-RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQ 124
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLS-AARALHQLF-DAENI 1295
E + L I + Y + L L+ + +R A AL L
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
+ + L +L + L A AL L+ G K + ID + L ++
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV--IDAGVCRRLVEL 242
Query: 1356 LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415
L N + + I+ G+ + +Q L+ L+ S + + A
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 1416 L-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ-MVKAGI 1473
+ + Q++ V ++ L+ ++ R + A+ + +++ +V+ G
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362
Query: 1474 IDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAA 1512
I DLL V S + L IL A+ +
Sbjct: 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG 402
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 3e-19
Identities = 67/398 (16%), Positives = 141/398 (35%), Gaps = 25/398 (6%)
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG-SKGIILAIANSGAVA 1125
Q N+ ++P + I + ++ S + A Q L+ + I I+ G VA
Sbjct: 9 QINNMEMAPGGV-ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 1126 GLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK-SIPLLVDI 1184
+ + E+ T + VL + ++ + ++P+ +++
Sbjct: 68 RFVEFLKRKENCTLQFESAW------------VLTNIASGNSLQTRIVIQAGAVPIFIEL 115
Query: 1185 LRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITEL 1244
L + AV L I S + + + L L + S + +
Sbjct: 116 LSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Query: 1245 FRILF-SNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAG 1302
L + LN L +L + A AL L + + +
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233
Query: 1303 QAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSL 1362
LV++L + AL A+ + +G+ + ++ ++ + L+SL +LSS
Sbjct: 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI--LNCSALQSLLHLLSSPKE- 290
Query: 1363 ELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--DD 1419
+K+ A + I GN I I + LIS++Q+ + A A
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 1420 EQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKL 1457
+Q++ + + L L++ + ++V+ + L +
Sbjct: 351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 4e-16
Identities = 66/417 (15%), Positives = 136/417 (32%), Gaps = 60/417 (14%)
Query: 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSP 606
+ + ++ S P+ Q ++ KL+ + I+++++
Sbjct: 9 QINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS------- 61
Query: 607 SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLF 665
+ V+ L N Q +A VL ++
Sbjct: 62 ----------------------------TPGVVARFVEFLKRKENCTLQFESAWVLTNIA 93
Query: 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725
S + V + LL+S + V Q+ ALG ++ T + +
Sbjct: 94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA---GDSTMCRDYVLDCNI 150
Query: 726 VKPLIKLAK-TSSIDAAETAVAALANLLSDPDIAAE-VLLEDVVSALTRVLAEGTSEGKK 783
+ PL++L + + AV AL+NL E + ++ L+ +L ++
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210
Query: 784 NASRALHQLLKHFP--VGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841
+A AL L + V+ V LV+ L + V+ AL V +
Sbjct: 211 DACWALSYLSDGPNDKIQAVIDAG-----VCRRLVELLM--HNDYKVVSPALRAVGNIVT 263
Query: 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLM 901
+ S+++ L+ L+ ++ +A +S + A + +
Sbjct: 264 -------GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI- 315
Query: 902 ARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYAL 958
++I I+ ++ R A + A + + L G +KPL L
Sbjct: 316 --DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 69/485 (14%), Positives = 147/485 (30%), Gaps = 79/485 (16%)
Query: 1418 DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKL--GKDRTPRKLQMVKAGIID 1475
+E+ G + ++ ++ + + KL + P + G++
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 1476 NCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSA 1535
++ L + + + Q +
Sbjct: 68 RFVEFL-------------------------KRKENCTL-----------------QFES 85
Query: 1536 LQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQD 1594
L NI + + + + L S +Q+ L ++ +
Sbjct: 86 AWVLTNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 1595 ITTKNAVVPLVQLAGIGI-LNLQQTAVKALEKISTS---WPKAVADAGGIFEIAKVIIQD 1650
+ N + PL+QL L + + AV AL + P+ + + ++ ++
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLI 1706
D + A LS + + V LV++L ++ AL A+
Sbjct: 205 DTD----VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQ---CEETSGRLLEALFNNGRIRQMKVSKYAI 1763
D + + + +LL LL S + +E + N Q +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320
Query: 1764 APLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSA--CRALISLLEDQSTDE 1821
L L QT + AA A+ + + + V + L LL + +
Sbjct: 321 PALISIL---QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS-K 376
Query: 1822 MKMVAICALQNFVMCSRTNRRA-----------VAEAGGILVVQELLLSTNAEVAGQAA- 1869
+ VA+ L+N + + + EA G+ ++ L N E+ +A
Sbjct: 377 IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436
Query: 1870 LLTKF 1874
L+ +
Sbjct: 437 LIEHY 441
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 65/450 (14%), Positives = 128/450 (28%), Gaps = 72/450 (16%)
Query: 1559 VIEPLLSFLESPSHAIQQLGTELLTHLLAQEH---FQQDITTKNAVVPLVQLAGIGI-LN 1614
+ ++ + S S Q T+ LL++E + I+T V V+
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 1615 LQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
LQ + L I ++ + V AG + +++ + + E A L N+
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED----VQEQAVWALGNIAG 136
Query: 1672 FNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLL 1731
+T + + ++ LL L
Sbjct: 137 DSTMC--------------------------------------RDYVLDCNILPPLLQLF 158
Query: 1732 RSHQCEETSGRLLEALFNNGRIR----QMKVSKYAIAPLSQYLLDPQTRSESGKLLAALA 1787
+ + AL N R + + + LS L A A
Sbjct: 159 SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL---FVSDTDVLADACWA 215
Query: 1788 LGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
L LS +A CR L+ LL + A+ A+ N V + +
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK-VVSPALRAVGNIVTGDDIQTQVILN 274
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSN--HTLQEYVSNELIRSLTAALERELWST 1904
+ + LL S + +A + + +Q + + +L + L+ +
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ---TAE 331
Query: 1905 ATINEEVLRTL-HVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNS 1963
+E + + + CI L L L+ L +
Sbjct: 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI--- 388
Query: 1964 WSTMPIDVAKSQAMIAAEAIPILQMLMKTC 1993
+ + + +A I L++
Sbjct: 389 -----LRLGEQEAKRNGTGINPYCALIEEA 413
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 6e-11
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 18/172 (10%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDT 141
A+ + +L S K T+S + + V+ P L+S+L++ T
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT 334
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201
RK AA A+ +SGG S + + K V G + L D L D+ + L N+
Sbjct: 335 RKEAAWAITNATSGG-SAEQI--KYLVELGCIKPLCDLLTVM---DSKIVQVALNGLENI 388
Query: 202 C--GDKDG---------YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
G+++ Y EA G+D I L S +N A L+
Sbjct: 389 LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 3e-10
Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 24/326 (7%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
+ W+L I+S V++AGA+ + L+S + Q + +W
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE-----QAVWALGNIAGDST 139
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+ VL I+P L L + A S +C G S +
Sbjct: 140 MCRDYVLD---CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILR 1186
L L+ ++D L++ + + Y + +K+ + D V LV++L
Sbjct: 197 LSWLLFVSDTDV-----LADACWALSYLSDGPNDKIQAVIDAGV-------CRRLVELLM 244
Query: 1187 PIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFR 1246
D P A+R + IV G D ++ L +L LS + + +
Sbjct: 245 H-NDYKVVSP-ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 1247 ILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQA-- 1304
I N I+ + LI++L R AA A+ + + +
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362
Query: 1305 VPPLVDMLSAASECELEVALVALVKL 1330
+ PL D+L+ ++VAL L +
Sbjct: 363 IKPLCDLLTVMDSKIVQVALNGLENI 388
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 8e-09
Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 16/245 (6%)
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG---LARASASVSACRALISLLEDQS 1818
+ + + + S +L A L E + ++ + L+ +
Sbjct: 21 ITSDMIEMIFSK---SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE 77
Query: 1819 TDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA-LLTKFLFS 1877
++ + L N + R V +AG + + ELL S +V QA L
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD 137
Query: 1878 NHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIP 1936
+ ++YV + ++ L ++ + T+ + L + + C+
Sbjct: 138 STMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195
Query: 1937 HLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPS 1996
L L L L S P D K QA+I A L L+
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYL----SDGPND--KIQAVIDAGVCRRLVELLMHNDYK 249
Query: 1997 FHERA 2001
A
Sbjct: 250 VVSPA 254
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-07
Identities = 57/327 (17%), Positives = 109/327 (33%), Gaps = 18/327 (5%)
Query: 1682 VVVLVKML-HSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETS 1740
V V+ L + + L ++ + QAG + ++LL S + E+
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-EFEDVQ 124
Query: 1741 GRLLEALFN----NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG 1796
+ + AL N + R + + PL Q + A AL +L + +
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKS 182
Query: 1797 LARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQEL 1856
A VS C ++S L S ++ A AL +AV +AG + EL
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242
Query: 1857 LLSTNAEVAGQAA-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRT 1914
L+ + +V A + + + + + N ++SL L +I +E T
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWT 299
Query: 1915 LHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKS 1974
+ I + P L+ L++ + + T +
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA-----TSGGSAEQI 354
Query: 1975 QAMIAAEAIPILQMLMKTCPPSFHERA 2001
+ ++ I L L+ + A
Sbjct: 355 KYLVELGCIKPLCDLLTVMDSKIVQVA 381
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 72/450 (16%), Positives = 151/450 (33%), Gaps = 46/450 (10%)
Query: 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGL 224
+ +P + L + + V+ L++LC D + G+ ++VGL
Sbjct: 42 PPNWRQPELPEVIAMLGF---RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL 98
Query: 225 LSSDNAAAQSNAASLLARLMLAFGDSIPT---VIDSGAVKALVQLVGQNNDISVRASAAD 281
L A L ++FG + + V ALV+L+ + D+ +
Sbjct: 99 LDHPKKEVHLGACGALKN--ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156
Query: 282 ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK--ECMQGQRGQALQGHATRALANIYG 339
L LSS + K + + L ++ P E + + L N G
Sbjct: 157 TLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214
Query: 340 GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL 399
+ + E + R + D AL + + ++ + + D++ +E+ + +L
Sbjct: 215 CLRNVSSERSEARRKLRECDGLVD---ALIFIV-----QAEIGQKDSDSKLVENCVCLLR 266
Query: 400 K---------PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA-DVR 449
P + + A + + + E ++ I L+ + +
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326
Query: 450 EYLILSLTKLC----RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505
E ++ LC I A+ + + + + LL E+ + A + L V
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA--V 384
Query: 506 DDSKWAITAAGGIPPLVQLLEAGSQKAREV--------AAHVLWILCCHSEDIRACVESA 557
D + IP LV+ L G Q + + + + + + +
Sbjct: 385 DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444
Query: 558 GAVPAFLWLLKSG--GPKGQDASAMALTKL 585
+ + + KSG K A+A+ L +
Sbjct: 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTI 474
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 7e-28
Identities = 93/529 (17%), Positives = 166/529 (31%), Gaps = 66/529 (12%)
Query: 73 KEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLL 131
K +P I++L K N AA L LC ++ ++ V IP L+
Sbjct: 37 KGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLV 96
Query: 132 SLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQ 191
LL + A AL +S G D VP L L + +D +
Sbjct: 97 GLLDHPKKEVHLGACGALKNISFG---RDQDNKIAIKNCDGVPALVRLL--RKARDMDLT 151
Query: 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI 251
+TG L NL D ++ + ++ + + R
Sbjct: 152 EVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR--------- 201
Query: 252 PTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG-VPVLIGAI 310
SV + A L +SS+ +A++ + DG V LI +
Sbjct: 202 -----------------HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIV 244
Query: 311 VAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370
E Q L + L N+ E+ Q+ R ++
Sbjct: 245 ---QAEIGQKDSDSKLVENCVCLLRNL------SYQVHREIPQAERYQEAAPNVANNTGT 295
Query: 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS----- 425
E ++ I + LLK + E A+ +L +
Sbjct: 296 -------SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485
+ +A + L+T V + +L L E IGK L+ +L G
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGG 407
Query: 486 SSEQHQEYAVQLIA-------ILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVA 536
++ + + + ++ + GI LV + ++G S+K A
Sbjct: 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467
Query: 537 AHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
A VL + + E +R +E G + + + + Q + + + L
Sbjct: 468 ALVLQTIWGYKE-LRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTL 515
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 90.8 bits (224), Expect = 2e-18
Identities = 52/387 (13%), Positives = 111/387 (28%), Gaps = 64/387 (16%)
Query: 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534
+ +I++LG + + A + L + D K + GIP LV LL+ ++
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108
Query: 535 VAAHVLWIL-CCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKL------- 585
A L + +D + +++ VPA + LL+ + L L
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168
Query: 586 --IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-------------EDLVQ 630
I + + + K L + +
Sbjct: 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228
Query: 631 KGSAANKGLRSLVQVLNSSNEEN------QEYAASVLADLFSMRQDICGS---------- 674
K + + +L+ ++ + + E +L +L
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288
Query: 675 ---------------LATDEIVNPCMRLLT-SNTQMVATQSARALGAL-SRPTKTKTTNK 717
L E+V + LL S T + SA A+ L + +
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEV-------LLEDVVSAL 770
+ E + + L + A AL NL D + L++++
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQ 408
Query: 771 TRVLAEGTSEGKKNASRALHQLLKHFP 797
+ + + +++++
Sbjct: 409 QNSSWNFSEDTVISILNTINEVIAENL 435
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 80.4 bits (197), Expect = 3e-15
Identities = 65/442 (14%), Positives = 140/442 (31%), Gaps = 51/442 (11%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
+ +++ L A++ L HL + + + D+ + LV L +
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 1619 AVKALEKISTSWP----KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNT 1674
A AL+ IS A+ + G+ + +++ + E L N L +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT---EVITGTLWN-LSSHD 165
Query: 1675 EYYFKV------PVVVLVKMLHSTLESTITVALNALLIHERT----------------DA 1712
++ + V + HS E I +
Sbjct: 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225
Query: 1713 SSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLD 1772
+ + G++DAL+ ++++ ++ S ++ + ++ +
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDS--------DSKLVENCVCLLRNLSYQVHREIP 277
Query: 1773 PQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQN 1832
R + A G + R ISLL++ T + + A+QN
Sbjct: 278 QAERYQEAAPNVANNTG--TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335
Query: 1833 FVMC----SRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNE 1888
R R A+ + + + +LL + + V A+ + L + +E +
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKH 395
Query: 1889 LIRSLTAAL-----ERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALK 1943
I +L L + +L T++ + + T I LV K
Sbjct: 396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINK 455
Query: 1944 SGSEAAQGSVLDTLCLLRNSWS 1965
SG+ + + +L+ W
Sbjct: 456 SGNRSEKEVR-AAALVLQTIWG 476
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 78.5 bits (192), Expect = 1e-14
Identities = 54/377 (14%), Positives = 111/377 (29%), Gaps = 58/377 (15%)
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG 574
+P ++ +L + AA L LC ++ ++ V +P + LL +
Sbjct: 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106
Query: 575 QDASAMALTKLIRAADSAT---------INQLLALLL-GDSPSSKAHVIKVLGHVLTM-- 622
+ AL + D + L+ LL + L ++ +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 623 -----------ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671
AL ++++ S + + + E A L ++ S R +
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226
Query: 672 CGSLATDE-IVNPCMRLLTSNTQMVATQSARALGAL------------------------ 706
L + +V+ + ++ + + S +
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286
Query: 707 ----SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA-ETAVAALANLLSD-----PD 756
+ + V+ I L K S A E + A+ NL +
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346
Query: 757 IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816
I + + E +SA+ +L K AS AL L +++ +A V
Sbjct: 347 IRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG 406
Query: 817 DSLNAMDMNGTDVADAL 833
N+ D ++
Sbjct: 407 GQQNSSWNFSEDTVISI 423
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 72.3 bits (176), Expect = 9e-13
Identities = 66/435 (15%), Positives = 145/435 (33%), Gaps = 41/435 (9%)
Query: 1264 LNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECELEV 1322
L ++IA+L + +AA L L + + +K + +P LV +L +
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 1323 ALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKII 1382
A AL ++ G + + + + + +L ++L ++L + + + I
Sbjct: 110 ACGALKNISFGR-DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168
Query: 1383 ANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGT 1442
I + L + S + + + V + L + S
Sbjct: 169 M-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL----TNTAGCLRNVSSER 223
Query: 1443 N-----HRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFR 1497
+ R + V ALI + + + + +++NC+ LL + I + R
Sbjct: 224 SEARRKLRECDGLVDALIFIV--QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281
Query: 1498 I----------LTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE--- 1544
S A V +++ LL+ + ++ A+ N+
Sbjct: 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPL 1604
+ L + + + L + + + + L +L ++ I K+A+ L
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNL 400
Query: 1605 VQLAGIGILNLQQT--------AVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQ 1653
V+ G N + + ++ K + + GI ++ V+I
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL--VLINKSGN 458
Query: 1654 PPHSLWESAALVLSN 1668
+AALVL
Sbjct: 459 RSEKEVRAAALVLQT 473
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 4e-11
Identities = 75/494 (15%), Positives = 164/494 (33%), Gaps = 53/494 (10%)
Query: 1299 DLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS 1358
+ G+ VP D A + E +A + + L + +L
Sbjct: 5 FMIGEEVPS--DQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPE---LPEVIAMLGF 59
Query: 1359 NSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL 1417
+K NAA L + + N K+ + + I L+ L+ V A A + +
Sbjct: 60 -RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118
Query: 1418 ---DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
D + ++ + V L+ L + L E L L + + + A
Sbjct: 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHA 178
Query: 1475 DNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS 1534
++P + R + S + ++ + V + G
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238
Query: 1535 ALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQD 1594
AL +V Q+ + K + S+++E + L + S+ + + + + A + +
Sbjct: 239 ALIFIV------QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292
Query: 1595 ITTKN-----------AVVPLVQLAGIGILN-LQQTAVKALEKISTSWPK-------AVA 1635
T V + L + + + A++ + A+
Sbjct: 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352
Query: 1636 DAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRF--NTEYYFKVPVVVLVKMLHST- 1692
+ IA ++ + + + ++A+ L N+ N E K + LVK L
Sbjct: 353 QEKALSAIADLLTNEHER----VVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQ 408
Query: 1693 -------LESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGR--- 1742
E T+ LN + + +A+++ + I+ L+ + +S E R
Sbjct: 409 QNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468
Query: 1743 -LLEALFNNGRIRQ 1755
+L+ ++ +R+
Sbjct: 469 LVLQTIWGYKELRK 482
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-09
Identities = 57/426 (13%), Positives = 127/426 (29%), Gaps = 37/426 (8%)
Query: 1493 AELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTL 1552
A + L + ++ P+ + LL A AL NI +
Sbjct: 69 AAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKI 127
Query: 1553 KLTPSQVIEPLLSFL-ESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG 1611
+ + L+ L ++ + ++ T L +L + + + +I +A+ L I
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIP 186
Query: 1612 ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
++ + + W + + G + + + L +++
Sbjct: 187 HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQ 245
Query: 1672 FNTEYYFKVPVVVL--VKMLHSTLESTITVALNALLIHE----------RTDASSAEQMT 1719
+V V +L + A E + A E +
Sbjct: 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF 305
Query: 1720 QAGVIDALLDLLRSHQCEETSGRLLEALFN--------NGRIRQMKVSKYAIAPLSQYLL 1771
Q V+ + LL+ + A+ N IR + A++ ++ L
Sbjct: 306 QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL- 364
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMV------ 1825
E A+ AL +L+ + A L+ L +
Sbjct: 365 --TNEHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421
Query: 1826 -AICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQ--AALLTKFLFSNHTLQ 1882
+ + + + + + E GI + + S N AAL+ + ++ L+
Sbjct: 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481
Query: 1883 EYVSNE 1888
+ + E
Sbjct: 482 KPLEKE 487
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 1e-08
Identities = 57/450 (12%), Positives = 129/450 (28%), Gaps = 56/450 (12%)
Query: 1010 LLLIISSFLRNNNV-TVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAIL-FQ 1067
L + S + L + L ++ +A +L L ++
Sbjct: 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSN---------AAAYLQHLCYR 78
Query: 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGL 1127
+ + ++ IP L LL + A A+ ++ + +AI N V L
Sbjct: 79 NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 1128 ITLIGH---------------------------IESDTPNLVALSEEFFLVRYPDEVVLE 1160
+ L+ ++ L +
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198
Query: 1161 KLFEIEDVRVGSTARKSIPLL----VDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIM 1216
K IE V + + + + R + + G + ++ + D++ ++
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258
Query: 1217 AEAGG----LDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLH 1272
L + EA S + I++L
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318
Query: 1273 LGSR-GARLSAARALHQL-----FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVA 1326
++A A+ L I+ + +A+ + D+L+ E ++ A A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378
Query: 1327 LVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELC----FIMFGNAKII 1382
L L +K + NL+++L ++S + + ++ N +
Sbjct: 379 LRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438
Query: 1383 ANPIASECIQPLISLMQSDLSIVVESAVCA 1412
++ I+ L+ + +S E A
Sbjct: 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAA 468
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTD 140
H +P L S +++ S + D + V+ G +P L+ LL S +
Sbjct: 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
+ A AL ++SG ++ + + + G +P L L + + + AL N
Sbjct: 70 ILQEALWALSNIASG--GNEQI--QAVIDAGALPALVQLL---SSPNEQILQEALWALSN 122
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
+ + +A ++AG + +V LLSS N A L+ + + I VID+GA+
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
ALVQL+ + + + A AL ++S + K+AV A + L +++
Sbjct: 183 PALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK---- 237
Query: 321 QRGQALQGHATRALANI 337
+Q A AL +
Sbjct: 238 -----IQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 32/259 (12%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P + L S+ + +A ++ S ++ + + + G +P L L+
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQI--QAVIDAGALPALVQLLS-- 64
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243
+ + AL N+ + +A ++AG + +V LLSS N A L+ +
Sbjct: 65 -SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGV 303
+ I VID+GA+ ALVQL+ + + + A AL ++S + +AV+ A +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 304 PVLIGAIVAPSKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGE 350
P L+ + +P+++ + A AL+NI G + L
Sbjct: 183 PALVQLLSSPNEQ---------ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS- 232
Query: 351 LSQSPRLAAPVADIIGALA 369
++ ++ + + L
Sbjct: 233 -HENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 43/287 (14%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
+P + Q L + + + A + + V AGA+PA + LL S
Sbjct: 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
+ + AL+ + A+ VI
Sbjct: 67 NEQILQEALWALSNI------AS----------GGNEQIQAVID---------------- 94
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
L +LVQ+L+S NE+ + A L+++ S + ++ + ++LL+S
Sbjct: 95 -----AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAE-GDVKPLIKLAKTSSIDAAETAVAALA 749
+ + ++ AL ++ ++ + + G + L++L + + + A+ AL+
Sbjct: 150 PNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205
Query: 750 NLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
N+ S + V + L ++ + + +K A AL +L H
Sbjct: 206 NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 40/276 (14%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
+ + L Q Q A + + + ++ A+ AG +P LVQLL + +++ +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
A L + + V AGA+PA + LL S + + AL+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA--------- 124
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
VI L +LVQ+L+S NE+ +
Sbjct: 125 -------SGGNEQIQAVI---------------------DAGALPALVQLLSSPNEQILQ 156
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
A L+++ S + ++ + ++LL+S + + ++ AL ++
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NE 213
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
K + G ++ L +L + + A AL L
Sbjct: 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 6e-23
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 12/247 (4%)
Query: 45 LEQLHANMSSPQERELI--TMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKV 102
L Q+ ++S +E + T + I E + A A+P + +L S
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQ 72
Query: 103 NVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161
LS + + V+ G +P L+ LL S + + A AL ++SG ++
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 130
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDII 221
+ + + G +P L L+ N+Q + AL N+ + +A ++AG + +
Sbjct: 131 I--QAVIDAGALPALVQLLSSPNEQ---ILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 222 VGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD 281
V LLSS N A L+ + + V ++GA++ L QL + + ++ A +
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQE 244
Query: 282 ALEALSS 288
ALE L S
Sbjct: 245 ALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 9e-22
Identities = 57/300 (19%), Positives = 111/300 (37%), Gaps = 50/300 (16%)
Query: 248 GDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLI 307
S + + Q + ++D+ + SA + S + +AV+ A +P L+
Sbjct: 2 RGSHHHHHHGSELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 308 GAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGA 367
+ +P+++ + A AL+NI S V D GA
Sbjct: 61 QLLSSPNEQ---------ILQEALWALSNI-------------ASGGNEQIQAVIDA-GA 97
Query: 368 LAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQ 426
L LV LL N+ + + L A++++ G Q
Sbjct: 98 L------------------------PALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486
V A A L+ L++ + + + +L+ + +A+ + L+ LL
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 192
Query: 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546
+EQ + A+ ++ + ++ K A+ AG + L QL ++K ++ A L L H
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
Query: 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
LV LL N+ + + L A++++ G Q V A A L+ L++ + + +
Sbjct: 59 LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Query: 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513
+L+ + +A+ + L+ LL +EQ + A+ ++ + ++ A+
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177
Query: 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573
AG +P LVQLL + +++ + A L + + + V+ AGA+ L K
Sbjct: 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 574 GQDASAMALTKL 585
Q + AL KL
Sbjct: 238 IQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 46/257 (17%), Positives = 100/257 (38%), Gaps = 26/257 (10%)
Query: 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698
L + Q LNS + + Q A + + S + ++ + ++LL+S + + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDI 757
+ AL ++ + I G + L++L + + + A+ AL+N+ S +
Sbjct: 74 ALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 758 AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVL---- 813
V+ + AL ++L+ + + A AL + GN Q + V+
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--------GNEQIQAVIDAGAL 182
Query: 814 -TLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAE 872
LV L++ + + +AL ++ +A + ++E L +
Sbjct: 183 PALVQLLSSPNEQI--LQEALWALSNIASGGNEQ-------KQAVKEAGALEKLEQLQSH 233
Query: 873 GPPPLQDKAIEILSRLC 889
+Q +A E L +L
Sbjct: 234 ENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 51/273 (18%), Positives = 96/273 (35%), Gaps = 39/273 (14%)
Query: 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
+ L D+ Q + + Q V A A L+ L++ + + +
Sbjct: 17 MTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513
+L+ + +A+ + L+ LL +EQ + A+ ++ + ++ A+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573
AG +P LVQLL + +++ + A L + + V AGA+PA + LL S +
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 195
Query: 574 GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633
+ A L+ + K V +
Sbjct: 196 ILQEALWA----------------LSNIASGGNEQKQAVKE------------------- 220
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
L L Q+ + NE+ Q+ A L L S
Sbjct: 221 --AGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-15
Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 63/292 (21%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+P + L SD++ ++ A + + + S I A+ ++GA+ L+ L+
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQI-LSDGNEQIQAVIDAGALPALVQLLSS------ 65
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
P+E +L++ A+
Sbjct: 66 --------------PNEQILQE------------------------------------AL 75
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
L+ I G + + +AG L AL + LS + + + L I + I+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASE 1317
+L L+ +L + A AL + E I+ AG A+P LV +LS+ +E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQLLSSPNE 194
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369
L+ AL AL + SG + + + LE L ++ S + ++++ A
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGA--LEKLEQLQSH-ENEKIQKEAQ 243
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 55/290 (18%), Positives = 116/290 (40%), Gaps = 50/290 (17%)
Query: 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273
+ + L+SD+ Q +A ++++ + I VID+GA+ ALVQL+ + +
Sbjct: 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNE 68
Query: 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333
+ A AL ++S + +AV+ A +P L+ + +P+++ + A A
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---------ILQEALWA 119
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
L+NI G + + + A + A
Sbjct: 120 LSNIASGGNEQIQAVID-----------AGALPA-------------------------- 142
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
LV LL + + + + L A++++ G Q V A A L+ L++ + +
Sbjct: 143 -LVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 200
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILT 502
+ +L+ + +A+ + ++ L L +E+ Q+ A + + L
Sbjct: 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 8/250 (3%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
G +P + L++ E A ++ S + + ID L +L ++
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAV--IDAGALPALVQL 62
Query: 1356 LSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
LSS + ++ + A L I G + I I + + L+ L+ S +++ A+ A
Sbjct: 63 LSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1415 RL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGI 1473
+ +Q++ V + LV+L+S N ++++ + AL + + ++ AG
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 1474 IDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQ 1532
+ + LL + L I + + ++ A +E L LQ + Q
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL--EQLQSHENEKIQ 239
Query: 1533 HSALQALVNI 1542
A +AL +
Sbjct: 240 KEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 59/298 (19%), Positives = 102/298 (34%), Gaps = 61/298 (20%)
Query: 1592 QQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVII 1648
+ + + Q + Q +A + +I + +AV DAG +
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-------- 56
Query: 1649 QDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708
P LV++L S E + AL AL
Sbjct: 57 -----PA-----------------------------LVQLLSSPNEQILQEALWALSNIA 82
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSH---QCEETSGRLLEALFN----NGRIRQMKVSKY 1761
+ + AG + AL+ LL S +E AL N Q +
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW----ALSNIASGGNEQIQAVIDAG 138
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTD 1820
A+ L Q L + +E A AL +++ +A A AL+ LL + +
Sbjct: 139 ALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-E 194
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN 1878
++ A+ AL N ++AV EAG + +++L N ++ +A + L S+
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 14/248 (5%)
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDD-EQQVELVEGYDVVDLLVRLVSGTNHRL 1446
+ + + SD SA F ++L D +Q++ V + LV+L+S N ++
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 1447 VEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAI 1505
++ + AL + + ++ AG + + LL L + L I + +
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 1506 ARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNIL----EKPQSLVTLKLTPSQVIE 1561
++ A + L +L P+ + AL AL NI E+ Q+++ + +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVID-----AGALP 183
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQTAV 1620
L+ L SP+ I Q L+++ + +Q + A+ L QL +Q+ A
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243
Query: 1621 KALEKIST 1628
+ALEK+ +
Sbjct: 244 EALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 13/251 (5%)
Query: 1713 SSAEQMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
S + + L S + + + + L + Q + A+ L Q
Sbjct: 3 GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62
Query: 1770 LLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
L P +E A AL +++ +A A AL+ LL + +++ A+
Sbjct: 63 LSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALW 118
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNHTLQEY-VS 1886
AL N +AV +AG + + +LL S N ++ +A L+ + + +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 1887 NELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGS 1946
+ +L L I +E L L I + + + L +
Sbjct: 179 AGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
Query: 1947 EAAQGSVLDTL 1957
E Q + L
Sbjct: 236 EKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 8/216 (3%)
Query: 1430 DVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSAL 1488
+ + + ++ + + + ++ D + ++ AG + + LL L
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 1489 CSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQS 1548
+ L I + + ++ A + L +L P+ + AL AL NI
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNE 129
Query: 1549 LVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDITTKNAVVPLVQL 1607
+ + + + L+ L SP+ I Q L+++ + Q + A+ LVQL
Sbjct: 130 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 1608 AGIGILNLQQTAVKALEKISTSWPK---AVADAGGI 1640
+ Q A+ AL I++ + AV +AG +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179
G +P ++ L S ++A L +++SG ++ + + + G +P L
Sbjct: 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQI--QAVIDAGALPALVQL 62
Query: 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239
L+ + + AL N+ + +A ++AG + +V LLSS N A
Sbjct: 63 LS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
L+ + + I VID+GA+ ALVQL+ + + + A AL ++S + K+AV
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 300 ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337
A + L E +Q + +Q A AL +
Sbjct: 179 AGALEKL---------EQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 9e-21
Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 37/242 (15%)
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
H ++ + + + L+++ +A+ + L+ LL
Sbjct: 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544
+EQ + A+ ++ + ++ A+ AG +P LVQLL + +++ + A L +
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+ V AGA+PA + LL S + + AL+ + +
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------- 170
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
++ + + G L L Q+ + NE+ Q+ A L L
Sbjct: 171 ------------------EQKQAVKEAG-----ALEKLEQLQSHENEKIQKEAQEALEKL 207
Query: 665 FS 666
S
Sbjct: 208 QS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 42/247 (17%)
Query: 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL 567
S +P +VQ L + Q+ + A L + + V AGA+PA + LL
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627
S + + AL+ N + VI
Sbjct: 64 SSPNEQILQEALWALS-----------N-----IASGGNEQIQAVID------------- 94
Query: 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL 687
L +LVQ+L+S NE+ + A L+++ S + ++ + ++L
Sbjct: 95 --------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAE-GDVKPLIKLAKTSSIDAAETAVA 746
L+S + + ++ AL ++ + + E G ++ L +L + + A
Sbjct: 147 LSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 747 ALANLLS 753
AL L S
Sbjct: 203 ALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Query: 65 ILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-LRLKVLL 123
+ IA E + A A+P + +L S LS + + V+
Sbjct: 36 LSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P L+ LL S + + A AL ++SG ++ + + + G +P L L
Sbjct: 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQI--QAVIDAGALPALVQLL--- 147
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243
+ + + AL N+ + +A EAG ++ + L S +N Q A L +L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 1264 LNQLIAVLHLGSRGARLSAARALHQLFD--AENIKDSDLAGQAVPPLVDMLSAASECELE 1321
L Q++ L+ + SA R L Q+ E I+ AG A+P LV +LS+ +E L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQ 72
Query: 1322 VALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAK 1380
AL AL + SG + + ID L +L ++LSS + ++ + A L I G +
Sbjct: 73 EALWALSNIASGGNEQIQAV--IDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNE 129
Query: 1381 IIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDD-EQQVELVEGYDVVDLLVRLV 1439
I I + + L+ L+ S +++ A+ A + +Q + V+ ++ L +L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 1440 SGTNHRLVEATVCALIKL 1457
S N ++ + AL KL
Sbjct: 190 SHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 41/243 (16%)
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVI 613
+P + L S + ++ L+++ + + +
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIA-----------------SGGNEQIQAV 50
Query: 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673
L +LVQ+L+S NE+ + A L+++ S +
Sbjct: 51 --------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA 733
++ + ++LL+S + + ++ AL + + I G + L++L
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNI---ASGGNEQIQAVIDAGALPALVQLL 147
Query: 734 KTSSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792
+ + + A+ AL+N+ S + V + L ++ + + +K A AL +L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Query: 793 LKH 795
H
Sbjct: 208 QSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 11/209 (5%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
+P +V L S + + +A EQ V DA + LV L
Sbjct: 12 SELPQMVQQLN--SPDQQELQSALRKLSQIASGGN--EQIQAV----IDAGALP-ALVQL 62
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT 457
L N+ + + L A++++ G Q V A A L+ L++ + + + +L+
Sbjct: 63 LS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG 517
+ +A+ + L+ LL +EQ + A+ ++ + ++ K A+ AG
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH 546
+ L QL ++K ++ A L L H
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 1198 AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY 1257
A+R L+QI G + + +AG L AL + LS + + + L I + I+
Sbjct: 32 ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAAS 1316
+L L+ +L + A AL + + + A+P LV +LS+ +
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 1317 ECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAEL 1371
E L+ AL AL + SG + + + LE L ++ S + ++++ A E
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGA--LEKLEQLQSHENE-KIQKEAQEA 203
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
G +P +V L++ + EL+ AL L ++ SG + + ID L +L ++
Sbjct: 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAV--IDAGALPALVQL 62
Query: 1356 LSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
LSS + ++ + A L I G + I I + + L+ L+ S +++ A+ A
Sbjct: 63 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1415 RLL--DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAG 1472
+ +EQ +++ + LV+L+S N ++++ + AL + +K + +AG
Sbjct: 122 NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 1473 IIDNCLDLL 1481
++ L
Sbjct: 181 ALEKLEQLQ 189
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 8/199 (4%)
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSH---QCEETS 1740
+V+ L+S + + AL L + + AG + AL+ LL S +E
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 1741 GRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG-LAR 1799
L Q + A+ L Q L + +E A AL +++ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 1800 ASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLS 1859
A A AL+ LL + + A+ AL N ++AV EAG + +++L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 1860 TNAEVAGQAALLTKFLFSN 1878
N ++ +A + L S+
Sbjct: 192 ENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 58/254 (22%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+P + L S + + A + ++ + SG I A+ ++GA+ L+ L+
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQI-ASGGNEQIQAVIDAGALPALVQLLSS------ 65
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
P+E +L++ A+
Sbjct: 66 --------------PNEQILQE------------------------------------AL 75
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
L+ I G + + +AG L AL + LS + + + L I + I+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQLF-DAENIKDSDLAGQAVPPLVDMLSAASEC 1318
+L L+ +L + A AL + K + A+ L + S +E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 1319 ELEVALVALVKLTS 1332
+ A AL KL S
Sbjct: 196 IQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 37/202 (18%), Positives = 83/202 (41%), Gaps = 6/202 (2%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAA-ELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
G+ L + + L+S + ++A +L I G + I I + + L+ L+ S
Sbjct: 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 1403 SIVVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
+++ A+ A + +Q++ V + LV+L+S N ++++ + AL +
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Query: 1462 TPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVEPLFM 1520
+ ++ AG + + LL + L I + + ++ A +E L
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 1521 VLLQPDFSLWGQHSALQALVNI 1542
+ + + Q A +AL +
Sbjct: 188 LQSHENEKI--QKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 65 ILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLL 123
+ IA E + A A+P + +L S LS + + + V
Sbjct: 120 LSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSS 154
G + L L E+ +K A EAL ++ S
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 8/216 (3%)
Query: 1375 MFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLD-DEQQVELVEGYDVVD 1433
M G+ + + ++ + S ++SA+ ++ +Q++ V +
Sbjct: 1 MRGSHHHHHH---GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP 57
Query: 1434 LLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCS-TI 1492
LV+L+S N ++++ + AL + + ++ AG + + LL + +
Sbjct: 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Query: 1493 AELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTL 1552
L I + + ++ A + L +L P+ AL AL NI
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--ILQEALWALSNIASGGNEQKQA 175
Query: 1553 KLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
+ + +E L + IQ+ E L L +
Sbjct: 176 -VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 39/204 (19%), Positives = 85/204 (41%), Gaps = 13/204 (6%)
Query: 1431 VVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALC 1489
+ +V+ ++ + + +++ + L ++ + ++ AG + + LL L
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 1490 STIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNIL----EK 1545
+ L I + + ++ A + L +L P+ + AL AL NI E+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQ 130
Query: 1546 PQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLL-AQEHFQQDITTKNAVVPL 1604
Q+++ + + L+ L SP+ I Q L+++ +Q + A+ L
Sbjct: 131 IQAVID-----AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 1605 VQLAGIGILNLQQTAVKALEKIST 1628
QL +Q+ A +ALEK+ +
Sbjct: 186 EQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 10/202 (4%)
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTD 1820
+ + Q L + + A L ++ +A A AL+ LL + +
Sbjct: 13 ELPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-E 68
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNH 1879
++ A+ AL N +AV +AG + + +LL S N ++ +A L+ +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 1880 TLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHL 1938
+ V + + +L L I +E L L I + + + L
Sbjct: 129 EQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 1939 VGALKSGSEAAQGSVLDTLCLL 1960
+E Q + L L
Sbjct: 186 EQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 9/178 (5%)
Query: 1713 SSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
S + ++ L S + +L + Q + A+ L Q
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 1770 LLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
L P +E A AL +++ +A A AL+ LL +++ A+
Sbjct: 63 LSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALW 118
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNHTLQEYV 1885
AL N +AV +AG + + +LL S N ++ +A L+ + ++ V
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 14/187 (7%)
Query: 1809 ALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQA 1868
++ L + A+ L +AV +AG + + +LL S N ++ +A
Sbjct: 16 QMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 1869 A-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLH 1926
L+ + + V + + +L L I +E L L I +
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQI 131
Query: 1927 TSEAATLCIPHLVGALKSGSEAAQGSVLDTLC-LLRNSWSTMPIDVAKSQAMIAAEAIPI 1985
+ +P LV L S +E L L + + QA+ A A+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------NEQKQAVKEAGALEK 184
Query: 1986 LQMLMKT 1992
L+ L
Sbjct: 185 LEQLQSH 191
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 55/348 (15%), Positives = 108/348 (31%), Gaps = 56/348 (16%)
Query: 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL--- 525
G+ + + E AV ++ L+ ++ + A+ GG+ + +LL
Sbjct: 27 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVD 85
Query: 526 --------EAGSQKAREVAAHVLWILCCHSEDIRACV-ESAGAVPAFLWLLKSGGPKGQD 576
+ S R A L L +A + G + A + LKS Q
Sbjct: 86 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 145
Query: 577 ASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636
A L L AD + ++ L + G
Sbjct: 146 VIASVLRNLSWRADVNS-------------------------------KKTLREVG---- 170
Query: 637 KGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDE-----IVNPCMRLLTS 690
+++L++ E + S L +L + + + + +V +
Sbjct: 171 -SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NT + L +S T ++ ++ L++ K+ S+ A L N
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289
Query: 751 L-LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797
L +P + VS L ++ ++ AL L+ + P
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 29/325 (8%)
Query: 410 RVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469
+LE Y +H + + L KL E A
Sbjct: 11 HLLE-QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHA 68
Query: 470 IGKREGIQLLISLLGLSSEQH-----------QEYAVQLIAILTEQVDDSKWAITA-AGG 517
+ + G+Q + LL + E + + YA + LT +K + + G
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVESAGAVPAFLWLLKSGG-PKGQ 575
+ LV L++ S+ ++V A VL L + + + G+V A +
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188
Query: 576 DASAMAL---------TKLIRAADSATINQLLALLLGDSPSSKAHVIK----VLGHVLTM 622
+ AL K A + L+ L S ++ +I+ +L +V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
+ ++ N L++L+Q L S + A L +L + +L V+
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308
Query: 683 PCMRLLTSNTQMVATQSARALGALS 707
L+ S +M+A SA AL L
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 14/270 (5%)
Query: 45 LEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNV 104
+ L + S R M + + + + S M ++ L+S + + +
Sbjct: 88 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147
Query: 105 AATLSVLC--KDEDLRLKVLLGGCIPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDH 161
A+ L L D + + + G + L+ + + T K+ AL+ +S+ ++
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTEN 205
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNV-VQGFVTGALRNL---CGDKDGYWRATLEAGG 217
I +G + L L +++ + + + G LRN+ + + + E
Sbjct: 206 K-ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
+ ++ L S + SNA L L + D GAV L L+ + +
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAM 323
Query: 278 SAADALEALSSKS---IKAKKAVVAADGVP 304
+A AL L + K + +P
Sbjct: 324 GSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 51/348 (14%)
Query: 56 QERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD 114
+ +L I + +H M + + + L L D
Sbjct: 3 HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62
Query: 115 EDLRLKVLLGGCIPPLLSLLKSE-----------STDTRKAAAEALYEVSSGGLSDDHVG 163
E+ R + G + + LL+ + S R+ A AL ++ G D
Sbjct: 63 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG---DVANK 119
Query: 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIV 222
+ +G + L QL +++ +Q + LRNL D + TL E G V ++
Sbjct: 120 ATLCSMKGCMRALVAQLKSESED---LQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176
Query: 223 GLL-SSDNAAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLV---GQNNDISVRA 277
+ + S L L + GA+ LV + Q N +++
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 278 SAADALEALSS---KSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
S L +SS + ++ + + + L+ + + S + +A L
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT---------IVSNACGTL 287
Query: 335 ANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALA 369
N+ G + L + S+ +A A + L
Sbjct: 288 WNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 4e-22
Identities = 60/414 (14%), Positives = 117/414 (28%), Gaps = 103/414 (24%)
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI-PTVIDSGAVKALVQL--- 266
G+D + + A +L +L +F + + + G ++A+ +L
Sbjct: 27 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQV 84
Query: 267 -------VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319
+ I++R A AL L+ + K + + G
Sbjct: 85 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG----------------- 127
Query: 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKS 379
M ALV L S+S L +A ++ L++
Sbjct: 128 --------------------CMRALVAQLK--SESEDLQQVIASVLRNLSW--------- 156
Query: 380 GVDDEPFDARQIEDI---LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436
D + L+ + + VL A+ +L +H K
Sbjct: 157 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL---------SAHCTENKA 207
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
I G + + L ++ E
Sbjct: 208 DIC----------------------AVDGALAFL-----VGTLTYRSQTNTLAIIESGGG 240
Query: 497 LIAILTEQV---DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553
++ ++ + +D + + + L+Q L++ S A LW L + +
Sbjct: 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607
+ GAV L+ S SA AL L+ + + + PS
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 6e-17
Identities = 57/375 (15%), Positives = 122/375 (32%), Gaps = 49/375 (13%)
Query: 1532 QHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHF 1591
H L L I ++ + ++ + + +P +L L E
Sbjct: 6 HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65
Query: 1592 QQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDD 1651
+ + + + +L + T
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTN-------------------------------- 93
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKVP-----VVVLVKMLHSTLESTITVALNALL- 1705
+L A + L+N+ + + + LV L S E V + L
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 1706 IHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN-----NGRIRQMKVSK 1760
+ R D +S + + + G + AL++ + E T +L AL+N +
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213
Query: 1761 YAIAPLSQYLLDP-QTRSESGKLLAALALGDLSQ----HEGLARASASVSACRALISLLE 1815
A+A L L QT + + L ++S +E + + + L+ L+
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 1816 DQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL 1875
S + A L N + ++ A+ + G + +++ L+ S + +A +A + L
Sbjct: 274 SHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
Query: 1876 FSNHTLQEYVSNELI 1890
+N + +N +
Sbjct: 333 MANRPAKYKDANIMS 347
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 44/310 (14%), Positives = 94/310 (30%), Gaps = 30/310 (9%)
Query: 1198 AVRLLTQIVDGSDT-NKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILF--SNPDL 1254
+ LL QI +T + A G+D + + + L ++ F +
Sbjct: 9 MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 68
Query: 1255 IRYEASLSSLNQLIAVLHLGSRGARLS--------AARALHQL--FDAENIKDSDLAGQA 1304
+ L ++ +L+ V A AL L D N
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 1305 VPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL 1364
+ LV L + SE +V L L+ T + +++L +
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVKALMECALEVKKEST 187
Query: 1365 KRNAAE----LCFIMFGNAKIIANPIASECIQPLISLM----QSDLSIVVESAVCAFERL 1416
++ L N I + L+ + Q++ ++ES +
Sbjct: 188 LKSVLSALWNLSAHCTENKADIC--AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 1417 L-----DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
+++ + L E + + L++ + + +V L L + +
Sbjct: 246 SSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304
Query: 1472 GIIDNCLDLL 1481
G + +L+
Sbjct: 305 GAVSMLKNLI 314
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 48/267 (17%), Positives = 90/267 (33%), Gaps = 21/267 (7%)
Query: 1178 IPLLVDILRPIPDRPGAPPV---------AVRLLTQIVDGSDTNK-LIMAEAGGLDALTK 1227
+ + ++L+ + G A LT + G NK + + G + AL
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 134
Query: 1228 YLSLSPQDSTEATITELFRILFSNPDLIRYE-ASLSSLNQLIAVL-HLGSRGARLSAARA 1285
L +D + + L + + + + S+ L+ + S A
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 1286 LHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECE----LEVALVALVKLTSGNTSKAC 1339
L L EN D A+ LV L+ S+ +E L ++S +
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254
Query: 1340 LLTDI-DGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISL 1397
+ + N L++L + L S SL + NA L + N K + L +L
Sbjct: 255 HRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Query: 1398 MQSDLSIVVESAVCAFERLLDDEQQVE 1424
+ S ++ + A L+ +
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRPAKY 340
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 59/341 (17%), Positives = 107/341 (31%), Gaps = 62/341 (18%)
Query: 1685 LVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQ------CEE 1738
+ + +E I A+ L+ D M + G + A+ +LL+ +
Sbjct: 37 DKNPMPAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 95
Query: 1739 TSGRLLE----ALFN----NGRIRQMKVSKY-AIAPLSQYLLDPQTRSESGKLLAALALG 1789
S L AL N + + S + L L ++ SE + + A L
Sbjct: 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL---KSESEDLQQVIASVLR 152
Query: 1790 DLSQHEGLA--RASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEA 1847
+LS + + V + +AL+ + + + AL N N+ +
Sbjct: 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 1848 GGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATI 1907
G L A L L + + +I S L R + S
Sbjct: 213 DGAL-----------------AFLVGTLTYRS---QTNTLAIIESGGGIL-RNVSSLIAT 251
Query: 1908 NEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTM 1967
NE+ + L C+ L+ LKS S + TL L
Sbjct: 252 NEDHRQIL--------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---- 293
Query: 1968 PIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
+ +A+ A+ +L+ L+ + + + L L
Sbjct: 294 --NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 50/334 (14%), Positives = 102/334 (30%), Gaps = 47/334 (14%)
Query: 996 PDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGI 1055
P I L L SF + + E G L+A+++ L D I
Sbjct: 44 PVEHQICPAVCVLMKL----SFDEEHRHAMNELGGLQAIAE-LLQVDCEMYGLTNDHYSI 98
Query: 1056 WI-----SALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
+ AL AN + + AL L+S+ + A + +L
Sbjct: 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 158
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTP---------NLVALSEEFFLVRYPDEVVLEK 1161
+ G+V L+ ++ ++ NL A E ++
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE-----NKADICAVD 213
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV-----AVRLLTQIVDGSDTNKLIM 1216
++ LV L + +R ++ ++ ++ ++ I+
Sbjct: 214 --------------GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259
Query: 1217 AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR 1276
E L L ++L L+ + NP + +++ L ++H +
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 1277 GARLSAARALHQLFD----AENIKDSDLAGQAVP 1306
+ +A AL L + G ++P
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-25
Identities = 70/360 (19%), Positives = 126/360 (35%), Gaps = 37/360 (10%)
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASL-----YGNIFLSQWVSHAEAKKVLIGLITM 443
+ L ++ + R + + L Y +H +
Sbjct: 100 ARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPA 159
Query: 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQH-----------QE 492
+ L KL E A+ + G+Q + LL + E + +
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR 218
Query: 493 YAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDI 550
YA + LT +K + + G + LV L++ S+ ++V A VL L +
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278
Query: 551 RACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKL----------IRAADSATINQLLA 599
+ + G+V A + + AL L I A D A + L+
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA-LAFLVG 337
Query: 600 LLLGDSPSSKAHVIK----VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
L S ++ +I+ +L +V ++ + ++ N L++L+Q L S +
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS--RPTKTK 713
A L +L + +L V+ L+ S +M+A SA AL L RP K K
Sbjct: 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 81/557 (14%), Positives = 162/557 (29%), Gaps = 132/557 (23%)
Query: 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111
M S + ++ + L G+ + + +S+L + K +++ TL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRLTSHL-GTKVEMVYSLLSMLGTHD---KDDMSRTLLAM 56
Query: 112 CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171
+D + + GC+P L+ LL D+ +
Sbjct: 57 SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE---------------ARAR 101
Query: 172 VVPTLWD-QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSDN 229
L + + + + + V L + + W G+D + +
Sbjct: 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPV 161
Query: 230 AAAQSNAASLLARLMLAFGDSI-PTVIDSGAVKALVQLV----------GQNNDISVRAS 278
A +L +L +F + + + G ++A+ +L+ + I++R
Sbjct: 162 EHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
A AL L+ + K L ++
Sbjct: 220 AGMALTNLTFGDVANK-------------------------------------ATLCSMK 242
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI---L 395
G M ALV L S+S L +A ++ L++ D + L
Sbjct: 243 GCMRALVAQLK--SESEDLQQVIASVLRNLSW---------RADVNSKKTLREVGSVKAL 291
Query: 396 VMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455
+ + + VL A+ +L +H K I
Sbjct: 292 MECALEVKKESTLKSVLSALWNL---------SAHCTENKADI----------------- 325
Query: 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL-------IAILTEQVDDS 508
+ L+ L S+ + ++ ++ L +D
Sbjct: 326 --------------CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371
Query: 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
+ + + L+Q L++ S A LW L + + + GAV L+
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431
Query: 569 SGGPKGQDASAMALTKL 585
S SA AL L
Sbjct: 432 SKHKMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 11/251 (4%)
Query: 45 LEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNV 104
+ L + S R M + + + + S M ++ L+S + + +
Sbjct: 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263
Query: 105 AATLSVLC--KDEDLRLKVLLGGCIPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDH 161
A+ L L D + + + G + L+ + + T K+ AL+ +S+ ++
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTEN 321
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNV-VQGFVTGALRNL---CGDKDGYWRATLEAGG 217
I +G + L L +++ + + + G LRN+ + + + E
Sbjct: 322 K-ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
+ ++ L S + SNA L L + D GAV L L+ + +
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAM 439
Query: 278 SAADALEALSS 288
+A AL L +
Sbjct: 440 GSAAALRNLMA 450
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 74/392 (18%), Positives = 132/392 (33%), Gaps = 45/392 (11%)
Query: 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
+L+ LL +D V + A +I RE +
Sbjct: 74 LLIQLLHGNDKDSVLLGNSRGSKEARARA--------SAALHNIIHSQPDDKRGRREIRV 125
Query: 454 LSLTKLCRREV-GIWEAIGKRE-GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511
L L + R WE E G+ + + E AV ++ L+ ++ + A
Sbjct: 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184
Query: 512 ITAAGGIPPLVQLLEAG-----------SQKAREVAAHVLWILCCHSEDIRACV-ESAGA 559
+ GG+ + +LL+ S R A L L +A + G
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244
Query: 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSA---------TINQLLALLL-GDSPSSK 609
+ A + LKS Q A L L AD ++ L+ L S+
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304
Query: 610 AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN----QEYAASVLADLF 665
V+ L ++ A + A + L LV L ++ N E +L ++
Sbjct: 305 KSVLSALWNLS--AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 666 SM---RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
S+ +D L + + ++ L S++ + + + L LS ++ +
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK---DQEALWD 419
Query: 723 EGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754
G V L L + A + AAL NL+++
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 1e-20
Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 54/357 (15%)
Query: 50 ANMSSPQERELITMRILTIAKAKKEA----RLLIGSHAQAMPLFISILRSGTPLAKVNVA 105
+ +R +R+L + + + +H M + + +
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169
Query: 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE-----------STDTRKAAAEALYEVSS 154
L L DE+ R + G + + LL+ + S R+ A AL ++
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229
Query: 155 GGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL- 213
G D + +G + L QL +++ +Q + LRNL D + TL
Sbjct: 230 G---DVANKATLCSMKGCMRALVAQLKSESED---LQQVIASVLRNLSWRADVNSKKTLR 283
Query: 214 EAGGVDIIVGLL-SSDNAAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLV---G 268
E G V ++ + + S L L + GA+ LV +
Sbjct: 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343
Query: 269 QNNDISVRASAADALEALSS---KSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325
Q N +++ S L +SS + ++ + + + L+ + + S
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT--------- 394
Query: 326 LQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALA 369
+ +A L N+ G + L + S+ +A A + L
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLM 449
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 2e-17
Identities = 78/435 (17%), Positives = 144/435 (33%), Gaps = 26/435 (5%)
Query: 521 LVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAM 580
+ LL ++ + L + S+D + +G +P + LL
Sbjct: 34 VYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92
Query: 581 ALTKLIRAADSATINQLLALLLGDSPSSKA-HVIKVLGHVLTMALQEDLVQKGSAANKGL 639
+K RA SA ++ ++ D + V+ +L + A E + A G+
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR--AYCETCWEWQEAHEPGM 150
Query: 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699
+ + E A VL L S ++ ++ + LL + +M +
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209
Query: 700 AR--------ALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALAN 750
A AL+ T NK + + +G ++ L+ K+ S D + + L N
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269
Query: 751 L--LSDPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFPVGDVLKGNAQ 807
L +D + + V AL E E K+ AL L H +
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT--ENKADICA 327
Query: 808 CRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLV 867
+ LV +L T +E + R L T + + ++ L+
Sbjct: 328 VDGALAFLVGTLTYRSQTNT--LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385
Query: 868 CCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927
L + A L L P + ++ L ++HS + +G A
Sbjct: 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQE--ALWDMGAVSMLK-NLIHSKHKMIAMGSA 442
Query: 928 ALL--ICAAKEHKKQ 940
A L + A + K +
Sbjct: 443 AALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 8e-17
Identities = 65/455 (14%), Positives = 148/455 (32%), Gaps = 60/455 (13%)
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCST 1491
V+++ L+S + L+ + + + M ++G + P+ L
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAMSSSQ-DSCISMRQSGCL-------PLLIQLLHGN 82
Query: 1492 IAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW-GQHSALQALVNILEKPQSLV 1550
+ + + + + A+ + + + QPD + L L I ++
Sbjct: 83 DKDSVLLGNSRGSKEARARASAALHNI--IHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGI 1610
+ ++ + + +P +L L E + + + + +L +
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200
Query: 1611 GILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
T + +L A + L+N+
Sbjct: 201 DCEMYGLT--------------------------------NDHYSITLRRYAGMALTNLT 228
Query: 1671 RFNTEYYFKVP-----VVVLVKMLHSTLESTITVALNALL-IHERTDASSAEQMTQAGVI 1724
+ + + LV L S E V + L + R D +S + + + G +
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288
Query: 1725 DALLDLLRSHQCEETSGRLLEALFN-----NGRIRQMKVSKYAIAPLSQYLLDP-QTRSE 1778
AL++ + E T +L AL+N + A+A L L QT +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348
Query: 1779 SGKLLAALALGDLSQH----EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFV 1834
+ L ++S E + + + L+ L+ S + A L N
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLS 407
Query: 1835 MCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ ++ A+ + G + +++ L+ S + +A +A
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 3e-14
Identities = 68/430 (15%), Positives = 136/430 (31%), Gaps = 54/430 (12%)
Query: 1078 MRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESD 1137
+ ++ +L +L + + D + L S S+ +++ SG + LI L+ + D
Sbjct: 31 VEMVYSLLSMLGTHDKDD-----MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKD 85
Query: 1138 TPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDIL-------RPIPD 1190
+ L + + D + G + + LL I
Sbjct: 86 SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145
Query: 1191 RPGAPPVAVRLLTQIVD--------------GSDTNKLIMAEAGGLDALTKYLSLSPQDS 1236
+ V+ + ++ M E GGL A+ + L + +
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY 205
Query: 1237 TEATITELFRILF--------------SNPDLIRYEASLSSLNQLIAVLHLGSRGARLSA 1282
+ +N + + L+A L S +
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG--CMRALVAQLKSESEDLQQVI 263
Query: 1283 ARALHQL--FDAENIKDSDLAGQAVPPLVDML-SAASECELEVALVALVKLTSGNTSKAC 1339
A L L N K + +V L++ E L+ L AL L++ T
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323
Query: 1340 LLTDIDGNLLESLYKILSSNS---SLELKRNAA----ELCFIMFGNAKIIANPIASECIQ 1392
+ +DG L L L+ S +L + + + ++ N + C+Q
Sbjct: 324 DICAVDG-ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382
Query: 1393 PLISLMQSDLSIVVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
L+ ++S +V +A L + + E + V +L L+ + + +
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
Query: 1452 CALIKLGKDR 1461
AL L +R
Sbjct: 443 AALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 71/439 (16%), Positives = 145/439 (33%), Gaps = 64/439 (14%)
Query: 1209 SDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLI 1268
S + + M ++G L L + L + +DS + R AS + N +
Sbjct: 59 SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS-------RGSKEARARASAALHNIIH 111
Query: 1269 AVLHLGSRGARLSAARALHQLFDAENI--KDSDLAGQAVPPLVDMLSAASECELEVALVA 1326
+ + L Q+ + + + + + A E ++ A+
Sbjct: 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171
Query: 1327 LVKLTSGNTSKACLLTDIDG-----NLLESLY---KILSSNSSLELKRNAAE-LCFIMFG 1377
L+KL+ + + ++ G LL+ + + + S+ L+R A L + FG
Sbjct: 172 LMKLSFDEEHRH-AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 230
Query: 1378 NAKIIANPIASE-CIQPLISLMQSDLSIVVESAVCAFERL---LDDEQQVELVEGYDVVD 1433
+ A + + C++ L++ ++S+ + + L D + L E V
Sbjct: 231 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290
Query: 1434 LLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA-GIIDNCLDLLPVAPSALCSTI 1492
L+ + +++ + AL L T K + G + + L I
Sbjct: 291 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350
Query: 1493 AE-LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVT 1551
E IL N S++ +++ + Q L
Sbjct: 351 IESGGGILRNVSSLIATNEDHR-----------------------QILRE---------- 377
Query: 1552 LKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGI 1610
+ ++ LL L+S S I L +L A+ Q+ + AV L L
Sbjct: 378 -----NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432
Query: 1611 GILNLQQTAVKALEKISTS 1629
+ + AL + +
Sbjct: 433 KHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 6e-09
Identities = 54/308 (17%), Positives = 97/308 (31%), Gaps = 61/308 (19%)
Query: 1718 MTQAGVIDALLDLLRSH------QCEETSGRLLE----ALFN----NGRIRQMKVSKY-A 1762
M + G + A+ +LL+ + S L AL N + + S
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244
Query: 1763 IAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLA--RASASVSACRALISLLEDQSTD 1820
+ L L ++ SE + + A L +LS + + V + +AL+ + +
Sbjct: 245 MRALVAQL---KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ AL N N+ + G L A L L
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGAL-----------------AFLVGTLTYRS- 343
Query: 1881 LQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVG 1940
+ + +I S L R + S NE+ + L C+ L+
Sbjct: 344 --QTNTLAIIESGGGIL-RNVSSLIATNEDHRQIL--------------RENNCLQTLLQ 386
Query: 1941 ALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHER 2000
LKS S + TL L + +A+ A+ +L+ L+ +
Sbjct: 387 HLKSHSLTIVSNACGTLWNLSAR------NPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440
Query: 2001 ADSLLHCL 2008
+ + L L
Sbjct: 441 SAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 8e-09
Identities = 50/270 (18%), Positives = 95/270 (35%), Gaps = 31/270 (11%)
Query: 1178 IPLLVDILRPIPDRPGAPPV---------AVRLLTQIVDGSDTNK-LIMAEAGGLDALTK 1227
+ + ++L+ + G A LT + G NK + + G + AL
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250
Query: 1228 YLSLSPQDSTEATITELFRILFSNPD----LIRYEASLSSLNQLIAVLHLGSRGARLSAA 1283
L +D + + L + + +R S+ +L + L + S
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC--ALEVKKESTLKSVL 308
Query: 1284 RALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECE----LEVALVALVKLTS-GNTS 1336
AL L EN D A+ LV L+ S+ +E L ++S T+
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAA----ELCFIMFGNAKIIANPIASECIQ 1392
+ + N L++L + L S SL + NA L + + + + A +
Sbjct: 369 EDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VS 424
Query: 1393 PLISLMQSDLSIVVESAVCAFERLLDDEQQ 1422
L +L+ S ++ + A L+ +
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-08
Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 45/314 (14%)
Query: 996 PDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGI 1055
P I L L SF + + E G L+A+++ L D I
Sbjct: 160 PVEHQICPAVCVLMKL----SFDEEHRHAMNELGGLQAIAE-LLQVDCEMYGLTNDHYSI 214
Query: 1056 WI-----SALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
+ AL AN + + AL L+S+ + A + +L
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTP---------NLVALSEEFFLVRYPDEVVLEK 1161
+ G+V L+ ++ ++ NL A E
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE----------NKAD 324
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV------AVRLLTQIVDGSDTNKLI 1215
+ ++ + LV L + + +R ++ ++ ++ ++ I
Sbjct: 325 ICAVDGA---------LAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374
Query: 1216 MAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGS 1275
+ E L L ++L L+ + NP + +++ L ++H
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 434
Query: 1276 RGARLSAARALHQL 1289
+ + +A AL L
Sbjct: 435 KMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 6e-08
Identities = 44/276 (15%), Positives = 90/276 (32%), Gaps = 30/276 (10%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGII-LAIANSGAVAGLITLIGHIESDTP 1139
+ A+A LL+ D + +L + L + A L ++ G +
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM----R 246
Query: 1140 NLVALSEEFFLVRYPDEVVLEK----LFEI-----EDVRVGSTARKSIPLLVDILRPIPD 1190
LVA ++ E + + L + + + S+ L++ +
Sbjct: 247 ALVAQ------LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE-------ATITE 1243
V L ++ I A G L L L+ Q +T +
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
Query: 1244 LFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF--DAENIKDSDLA 1301
+ ++ +N D + + L L+ L S +A L L + ++ +
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSK 1337
G AV L +++ + + + AL L + +K
Sbjct: 421 G-AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 7e-20
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 8/216 (3%)
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDL-RLKVLLGGCIPPLLSLLKSESTDTRKAA 145
P ++ + L+ LC++ D L G + L++ + R A
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 146 AEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205
A+ + S + + + G + L L+ + V+ A+ L ++
Sbjct: 103 AQLIGTCS----QNVAAIQEQVLGLGALRKLLRLLD--RDACDTVRVKALFAISCLVREQ 156
Query: 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265
+ L G +++ + + +A LL L++ + T+ G V+ LV
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216
Query: 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
LV + AL +L + + + +
Sbjct: 217 LV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 40/239 (16%)
Query: 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV-QLLEAGSQ 530
+ + +Q +E A++L+A L E +D + G+ LV + LEAG+
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAA 96
Query: 531 KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKLIRAA 589
R AA ++ + I+ V GA+ L LL + + A++ L+R
Sbjct: 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR-- 154
Query: 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS 649
+ + ++ G L++ +
Sbjct: 155 --------------EQEAGLLQFLR---------------------LDGFSVLMRAMQQQ 179
Query: 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708
++ + +A +L +L + G+L + +V + L+ + AL +L
Sbjct: 180 VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 2/207 (0%)
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIG-LITMATAD 447
Q + ++ +E LE +A L N+ + +L+G + A
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 448 VREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVD 506
+R + + I E + ++ L+ LL + + A+ I+ L + +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
G L++ ++ QK + +A +L L + + + S G V + L
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 567 LKSGGPKGQDASAMALTKLIRAADSAT 593
+++ + AL L+
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGV 244
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 6e-13
Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 3/175 (1%)
Query: 393 DILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATAD-VRE 450
+LV ++ R + + + + + V A + L+ L+ D VR
Sbjct: 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRV 143
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ +++ L R + + +G +L+ + ++ + + L+ L + K
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFL 564
+ + G + LV L+ E L L +R C E + L
Sbjct: 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 4e-11
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 17/278 (6%)
Query: 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEA 215
G + MK + P + D + L +LC + D +
Sbjct: 22 GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQL 80
Query: 216 GGVDIIVG-LLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
G+ ++VG L + A + AA L+ V+ GA++ L++L+ ++ +
Sbjct: 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT 140
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
VR A A+ L + + DG VL+ A+ ++ L+ + L
Sbjct: 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK---------LKVKSAFLL 191
Query: 335 ANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYAL--MVFEQKSGVDDEPFDA 388
N+ G P L + +L A + + AL +V + GV +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426
+E++L + + LE L F S
Sbjct: 252 LGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 46/285 (16%)
Query: 487 SEQHQEYAVQLIAILTEQVDDSKW-----AITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
H V + + Q + + + + P + +A Q+ RE A +L
Sbjct: 6 HHHHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLA 65
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL 601
LC + ++ + +G L++G + +A + +
Sbjct: 66 DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ-------------- 111
Query: 602 LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASV 660
+ + + V+ LR L+++L+ + + A
Sbjct: 112 --NVAAIQEQVLG---------------------LGALRKLLRLLDRDACDTVRVKALFA 148
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720
++ L ++ + + MR + Q + +SA L L +K +
Sbjct: 149 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL---VGHPEHKGTL 205
Query: 721 IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLED 765
+ G V+ L+ L +T E + AL +L++D E
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 250
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 3/197 (1%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+ LLV G A +L+ + + G L L + L D+
Sbjct: 83 MHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141
Query: 1238 -EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIK 1296
+ + ++ + L + L+ + + ++ +A L L
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201
Query: 1297 DSDLAGQ-AVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
L V LV ++ E L AL L + + + L E L
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261
Query: 1356 LSSNSSLELKRNAAELC 1372
E + E C
Sbjct: 262 CQLLQQHEEYQEELEFC 278
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPL-AKVNVAATLSVL 111
+ R I T ++ + + A+ + +L +V +S L
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLLRLLDRDACDTVRVKALFAISCL 152
Query: 112 CKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170
++ E L+ L L+ ++ + + +A L + G +
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH----KGTLCSM 208
Query: 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAG 216
G+V L + + + V GAL +L D R E
Sbjct: 209 GMVQQLVALV---RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 16/226 (7%)
Query: 1807 CRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGI-LVVQELLLSTNAEVA 1865
E + + + A+ L + + N + G+ L+V L + A +
Sbjct: 41 MPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLR 99
Query: 1866 GQAA-LLTKFLFSNHTLQEYV-SNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFP 1923
+AA L+ + +QE V +R L L+R+ + T+ + L + +
Sbjct: 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQE 157
Query: 1924 KLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAI 1983
L+ A++ + + + + LL+N + + +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLK---VKSAFLLQNLLVG---HPEHKGTLCSMGMV 211
Query: 1984 PILQMLMKTCPPSFHERA----DSLLHCLPGCLTVTIKRGNNLKQT 2025
L L++T FHE SL+ P + + L++
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 12/184 (6%)
Query: 1743 LLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARAS 1801
L E + N Q+ + L L + + + AA +G SQ+ +
Sbjct: 67 LCENMDNAADFCQLS----GMHLLVGRYL--EAGAAGLRWRAAQLIGTCSQNVAAIQEQV 120
Query: 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
+ A R L+ LL+ + D +++ A+ A+ V G V+ +
Sbjct: 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180
Query: 1862 AEVAGQAA-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIF 1919
++ ++A LL L + + + + +++ L A + E + +E VL L +
Sbjct: 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLV 237
Query: 1920 MNFP 1923
+FP
Sbjct: 238 TDFP 241
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 45/243 (18%), Positives = 80/243 (32%), Gaps = 9/243 (3%)
Query: 1272 HLGSRGARLSAARALHQLFDAENIKDSD--LAGQAVPPLVDMLSAASECELEVALVALVK 1329
H S G + Q + E +K L+ P + AA + E E AL L
Sbjct: 7 HHHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLAD 66
Query: 1330 LTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIAS 1388
L N A + G + L + L+ AA+ + A I +
Sbjct: 67 LCE-NMDNAADFCQLSG--MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 123
Query: 1389 ECIQPLISLMQSDLSIVV-ESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRL 1446
++ L+ L+ D V A+ A L+ + E + D +L+R + +L
Sbjct: 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183
Query: 1447 VEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAI 1505
+ L L K + G++ + L+ + L ++T+
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243
Query: 1506 ARS 1508
R
Sbjct: 244 VRE 246
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 15/208 (7%)
Query: 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLV-QLAGIGIL 1613
P L ELL L D + + LV + G
Sbjct: 39 QPMPPTAGEAEQAADQQEREGAL--ELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA 96
Query: 1614 NLQQTAVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
L+ A + + S + V G + ++ +++ +D ++ A +S ++
Sbjct: 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD---ACDTVRVKALFAISCLV 153
Query: 1671 RFNTEYYFKVP----VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDA 1726
R + VL++ + ++ + L + G++
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 1727 LLDLLRSHQCE--ETSGRLLEALFNNGR 1752
L+ L+R+ E L +L +
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFP 241
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 8/135 (5%)
Query: 1998 HERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISP-EW 2056
H + + L V +K + L+ G + ++T G ++V+ + ++
Sbjct: 9 HHSSGLVPRGSHMALIVHLKTVSELR---GRADRIAKVTFR-GQSFYSRVLENCEDVADF 64
Query: 2057 KEGFTWAFDVPP-KGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDN 2114
E F W + + L I + + +G + + KVV E L DN
Sbjct: 65 DETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDN 124
Query: 2115 NKDSSSRTLEIEIIW 2129
N + +L +E+ +
Sbjct: 125 NAIIKT-SLSMEVRY 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 2e-13
Identities = 115/679 (16%), Positives = 205/679 (30%), Gaps = 191/679 (28%)
Query: 937 HKKQSMDALDLS----GYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAF--QEA 990
H MD + Y K ++ D N C D++ M ++ +E
Sbjct: 2 HHHHHMD-FETGEHQYQY-KDILSVFEDAFVDNFDCK--DVQ------DMPKSILSKEEI 51
Query: 991 DD-FDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEA--GALEA----LSDKLASYTS 1043
D D + L L V + L L + +
Sbjct: 52 DHIIMSKDAVS------GTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1044 NPQAEFEDTEGIWISALFLAILFQDANIVLSPATM-RIIPALAL---L--LRSDEVIDRF 1097
P ++I L+ D N V + + R+ P L L L LR + +
Sbjct: 104 QPSMMTR----MYIEQR--DRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 1098 ----FAAQAMASLVCSGSK-------GII-LAIANSGAVAGLI----TLIGHIESDTPNL 1141
+A VC K I L + N + ++ L+ I+ PN
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNW 213
Query: 1142 VALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR- 1200
+ S+ ++ + +L + + LL +L + + +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LL--VLLNVQNAKAWNAFNLSC 266
Query: 1201 --LLT----QIVD--GSDTNKLI--------MAEAGGLDALTKYLSLSPQD-STEAT--- 1240
LLT Q+ D + T I + L KYL PQD E
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1241 ------ITELFRILFSNPDLIRYEASLSSLNQLI--AVLHLGSRGARLSAARALHQLFDA 1292
I E R + D ++ + L +I ++ L R ++FD
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYR--------KMFDR 377
Query: 1293 ENI--KDSDLAGQAVPPLV-DML-SAASECELEVALVALVKLTSGNTSKACLLTDIDGNL 1348
++ + +P ++ ++ + ++ V + L K + + +
Sbjct: 378 LSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHK-------YSLVEKQPKEST 425
Query: 1349 LESLYKILSSNSSLELK---RNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIV 1405
+ S+ I LELK N L + I+ + + DL
Sbjct: 426 I-SIPSIY-----LELKVKLENEYAL------HRSIV------DHYNIPKTFDSDDLIPP 467
Query: 1406 VESA-VCAFERL---LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
+ + L + + E + + +V L + R +E K+ D
Sbjct: 468 YLDQYFYSH--IGHHLKNIEHPERMTLFRMVFL--------DFRFLEQ------KIRHDS 511
Query: 1462 TPRK-----------LQMVKAGIIDNC----------LDLLP-VAPSALCSTIAELFRI- 1498
T L+ K I DN LD LP + + +CS +L RI
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 1499 -LTNSSAIARSSDAAKIVE 1516
+ AI +A K V+
Sbjct: 572 LMAEDEAIF--EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 79/629 (12%), Positives = 185/629 (29%), Gaps = 203/629 (32%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAAELCFI---MFGNAKIIANPIASECIQPLISLMQS 1400
+ + + ++ + L K+ F+ + N K + +PI +E QP
Sbjct: 56 MSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP------- 105
Query: 1401 DLSIVVESAVCAFERLLDDEQ-----QVELVEGYDVV-DLLVRLVSGTN---H------- 1444
S++ + +RL +D Q V ++ Y + L+ L N
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 1445 -RLVEATVCAL-------------IKLGKDRTPRK-LQMVK-----------------AG 1472
+ VC + L +P L+M++ +
Sbjct: 164 TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1473 IIDNCLDL---------LPVAPSALC-------STIAELF----RIL--TNSSAIARSSD 1510
I + + L + F +IL T +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 1511 AAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE-KPQSLVTLKLTPSQV--IEPLLSFL 1567
AA + + + L+ L+ +PQ L P +V P
Sbjct: 283 AATTTH-ISLDHHSMTLT---PDEVKSLLLKYLDCRPQDL------PREVLTTNPR---- 328
Query: 1568 ESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627
+ + + L ++++ K + + ++++ LE
Sbjct: 329 -----RLSIIAESIRDGLATWDNWKHVNCDK-------------LTTIIESSLNVLE--- 367
Query: 1628 TSWPKAVADAGGIFEIAKVIIQDD-PQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLV 1686
P A+ +F+ + P +LS ++ F+ +VV+
Sbjct: 368 ---P---AEYRKMFD-RLSVFPPSAHIPTI--------LLS-LIWFDVIKS--DVMVVVN 409
Query: 1687 KMLHSTL------ESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETS 1740
K+ +L ESTI+ + ++ + + + + + +++D + ++
Sbjct: 410 KLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSD 462
Query: 1741 GRLLEALFNNGRIRQMKVSKYAIAPLSQYL---LDPQTRSESGKLLAALALGDLS----- 1792
+ L Y ++ L E L + L D
Sbjct: 463 DLIPPYLDQ-----------Y----FYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQK 506
Query: 1793 -QHEGLARASASVSACRALISLLED-----------QSTDEMKMVAICALQNFVMCSRTN 1840
+H+ A +A ++++ L+ E + A+ +F+ N
Sbjct: 507 IRHDSTAW-----NASGSILNTLQQLKFYKPYICDNDPKYERL---VNAILDFLPKIEEN 558
Query: 1841 RRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ + +++ L++ + + +A
Sbjct: 559 ---LICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 3e-11
Identities = 95/633 (15%), Positives = 178/633 (28%), Gaps = 181/633 (28%)
Query: 1477 CLDLLPVAPSAL-----CSTIAELFR-ILTNSSA--IARSSDAAKIVEPLFMVLLQPDFS 1528
D+L V A C + ++ + IL+ I S DA LF LL
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--- 74
Query: 1529 LWGQHSALQALVNILEKP------QSLVTLKLTPSQVIEPLLSFLESPSHAIQQLG---- 1578
Q +Q V + + + T + PS + + + + Q
Sbjct: 75 ---QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 1579 --TELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG------------------------- 1611
+ L ++ + KN ++ + G G
Sbjct: 132 SRLQPYLKL--RQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 1612 ----------ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD---DPQPPHSL 1658
+L + Q + ++ TS ++ + ++ + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1659 WESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNAL------LIHERTDA 1712
LVL NV F + +L+ +T +T L+A L H
Sbjct: 248 -----LVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1713 SSAEQMTQ-AGVIDALLDLLRSHQCEETSGRLLE---ALFNNGRIRQMKVSKYAIAPLSQ 1768
+ E + +D L + T+ R L +G
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLAT----WDN----WKH 349
Query: 1769 YLLDPQTRS-ESGKLLAALALGDLSQH-EGLA--RASASVSACRALISLL--EDQSTDEM 1822
D T ES L L + + + L+ SA + L+SL+ + +D M
Sbjct: 350 VNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVM 405
Query: 1823 KMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL------- 1875
+V L + + + + + + + L ++ + AL +
Sbjct: 406 VVV--NKLHKYSLVEKQPKE------STISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1876 -FSNHTLQ-----EYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNF----PKL 1925
F + L +Y + + L E + R +F++F K+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-------TLFRM---VFLDFRFLEQKI 507
Query: 1926 -HTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIP 1984
H S A A GS+L+TL + + I
Sbjct: 508 RHDSTAWN----------------ASGSILNTL-----------QQLKFYKPYIC----- 535
Query: 1985 ILQMLMKTCPPSFHERADSLLHCLPGCLTVTIK 2017
P + +++L LP I
Sbjct: 536 ------DNDP-KYERLVNAILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-10
Identities = 110/723 (15%), Positives = 204/723 (28%), Gaps = 237/723 (32%)
Query: 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN-QEYAASVLAD----LF 665
V + +L+ + ++ A + G L L S EE Q++ VL L
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 666 SMRQDICG--SLATDEIVNPCMRLLTSNTQMVATQSAR---------ALGALSRPTKT-- 712
S + S+ T + RL N +R AL L RP K
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVL 154
Query: 713 --------KTTNKMSYIAEGDVKPL-------IKLAKTSSIDAAETAVAALANLL----- 752
KT + V+ + L +S ET + L LL
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDP 211
Query: 753 -----SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL--------HQLLKHFPVG 799
SD ++ + + + L R+L K L + F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAF--- 262
Query: 800 DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEV 859
N C+ ++ T V D L +A
Sbjct: 263 -----NLSCKILLTT----------RFKQVTDFL--------------------SAATTT 287
Query: 860 PSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSS 919
S++ L D+ +L + L
Sbjct: 288 HISLDHHSMTLTP------DEVKSLLLK-------YLD-----------------CRPQD 317
Query: 920 L--EVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLD-IEVR 976
L EV + + E + + D + L +++ SS + L+ E R
Sbjct: 318 LPREV-LTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIE--SSLNVLEPAEYR 372
Query: 977 TPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSD 1036
+ + + F P +L +W +V + + +
Sbjct: 373 --KMFDRLSVFPP----SAHIPTILL---SLIW-----------FDVIKSDV---MVVVN 409
Query: 1037 KLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATM--RIIPALALLLRSD--- 1091
KL Y+ + E T I I +++L + + N + I+ + D
Sbjct: 410 KLHKYSLVEKQPKEST--ISIPSIYLELKVKLENE----YALHRSIVDHYNIPKTFDSDD 463
Query: 1092 ---EVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIG-HIESDTPNLVALSEE 1147
+D++F + IG H+++ + E
Sbjct: 464 LIPPYLDQYFY-----------------------------SHIGHHLKN-----IEHPER 489
Query: 1148 FFLVR--YPDEVVLE-KLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRL-LT 1203
L R + D LE K+ R STA + +++ L+ ++
Sbjct: 490 MTLFRMVFLDFRFLEQKI------RHDSTAWNASGSILNTLQ---Q--------LKFYKP 532
Query: 1204 QIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSS 1263
I D + + ++A+ +L ++ + T+L RI D +E +
Sbjct: 533 YICDNDPKYERL------VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 1264 LNQ 1266
+ +
Sbjct: 587 VQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-08
Identities = 97/630 (15%), Positives = 182/630 (28%), Gaps = 186/630 (29%)
Query: 372 LMVFEQKSGVDDEPFDARQIEDILVMLLKPH--DNKLVQERVLEAMASLYGNIFLSQWVS 429
L VFE VD+ FD + ++D+ +L D+ ++ + + L+ LS+
Sbjct: 22 LSVFEDAF-VDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSK--- 74
Query: 430 HAEAKKVLIGLITMATADVREY--LILSLTKLCRREVGIWEA-IGKREGIQLLISLLGLS 486
E + + Y L+ + R+ + I +R+ +
Sbjct: 75 QEEMVQKFVE-----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------ND 122
Query: 487 SEQHQEYAV---QLIAILTE---QVDDSKWAITAAGGIPPLVQLLEAGSQK---AREVAA 537
++ +Y V Q L + ++ +K + G GS K A +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGV---------LGSGKTWVALDVCL 172
Query: 538 ----------HVLWILCCHSEDIRACVESAGAVPAFLWLL--KSGGPKGQDASAMALTKL 585
+ W+ +++ C S V L L + + + KL
Sbjct: 173 SYKVQCKMDFKIFWL------NLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 586 IRAADSATINQLL-------ALLLGDSPSSKAHV------IKVLGHVLTMALQEDLVQKG 632
+ A + +LL LL+ + + K+L + T + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTR--FKQVTDFL 281
Query: 633 SAANKGLRSLVQVLNS-SNEENQEYAASVL-ADLFSMRQDICGSLATDEIVNPCMRLLTS 690
SAA SL + + +E + L + +++ NP S
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-------TNP---RRLS 331
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVA-- 746
++A L+ K N KL SS++ E A
Sbjct: 332 ---IIA---ESIRDGLATWDNWKHVNCD------------KLTTIIESSLNVLEPAEYRK 373
Query: 747 ---ALANLLSDPDIAAEVL-----------LEDVV------SALTRVLAEGTSE------ 780
L+ I +L + VV S + + E T
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 781 ---GKKNASRALHQ-LLKHFPVGDVLKGNAQCRFVVLTLVDS---------LNAMDMNGT 827
K ALH+ ++ H+ + + ++ +D L ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDD----LIPPYLDQYFYSHIGHHLKNIEH--P 487
Query: 828 DVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD-----KA 881
+ +V L +Q + W A SI LQ
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNA----SGSILNT----------LQQLKFYKPY 533
Query: 882 I----EILSRLCGDQPAVLGDFLMARSSSI 907
I RL + DFL ++
Sbjct: 534 ICDNDPKYERLVNA----ILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 3e-06
Identities = 56/402 (13%), Positives = 113/402 (28%), Gaps = 152/402 (37%)
Query: 1853 VQELLLS--TNAEV-----AGQAALLTKFLF------SNHTLQEYVSNELIRS----LTA 1895
VQ++ S + E+ + A T LF +Q++V E++R L +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-EEVLRINYKFLMS 96
Query: 1896 ALERELWSTATINEEVLRTLHVIFMN---FPKLHTSEAATLCIPHLVGALKSGSEAAQ-- 1950
++ E + + + ++ + F K + + L+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQALLELRPA 150
Query: 1951 -----------G-SVLDTLCLLRNS-----------WSTMPIDVAKSQAMIAAEAIPILQ 1987
G + + L + + W +++ + +LQ
Sbjct: 151 KNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFW----LNLKNCN--SPETVLEMLQ 203
Query: 1988 MLMKTCPPSFHERADS-----------------LL--HCLPGCLTVTIKRGNNLK--QTM 2026
L+ P++ R+D LL CL V L Q
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNVQNA 256
Query: 2027 GTTNAF---CRL---TIGNGPPRQTKVV--------SHSISPEWKEGFT----------W 2062
NAF C++ T R +V +H T +
Sbjct: 257 KAWNAFNLSCKILLTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 2063 ----AFDVPPKGQKLH-----IICKSK-------NTFGKSTLGKVTIQIDKVV------- 2099
D+P + + II +S + + K+T I+ +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 2100 TEGVYSGL--FNLNHDNNKDS--SSRTLEIEIIWSNRISDES 2137
++ L F + + L + IW + I +
Sbjct: 371 YRKMFDRLSVFP------PSAHIPTILLSL--IWFDVIKSDV 404
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP 2067
G L V + L+ + + + +LT + +PEW E F F V
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFI--FTVS 67
Query: 2068 PKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEG-VYSGLFNLNHDN 2114
+L K+ + +G+ TI ++ V EG + +N+ D
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE 116
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 476 IQLLISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533
++ +S+L A I Q +++ + GI L+QLL+ ++ +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 534 EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKL 585
L L D + V VP L +LK + L L
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-12
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 1/148 (0%)
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
+ C ++ + + + GI L+ LL + +E Q + L + +
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 507 DSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW 565
D+K + G+P L+Q+L+ + ++ +LW L + + + A
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144
Query: 566 LLKSGGPKGQDASAMALTKLIRAADSAT 593
++ G D + T
Sbjct: 145 IIPFSGWPEGDYPKANGLLDFDIFYNVT 172
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 8e-12
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 9/159 (5%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
+++ C K + + G+ ++ LL N Q L L+
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
D+ V + V L+Q++ Q D+ + L LSS K ++ + +
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KLKNLMITEALLT 139
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI 337
L I+ P +G +A + + T L N+
Sbjct: 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 41/277 (14%), Positives = 78/277 (28%), Gaps = 74/277 (26%)
Query: 80 GSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKS 136
+ +S+L + P A + C + R +V I LL LLK
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63
Query: 137 ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196
++ D ++A AL + + NK
Sbjct: 64 QNEDVQRAVCGALRNLVFE-------------------------DNDNKL---------- 88
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
E GV ++ +L + + + LL L+ D + ++
Sbjct: 89 --------------EVAELNGVPRLLQVLKQTRDLETKKQITGLL--WNLSSNDKLKNLM 132
Query: 256 DSGAVKALVQLV---------------GQNNDISVRASAADALEALSSKSIKAKKAVVAA 300
+ A+ L + + D + + L +SS +KA+
Sbjct: 133 ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC 192
Query: 301 DG-VPVLIGAIVAPSKECMQGQRGQALQGHATRALAN 336
DG + L+ + + Q + L N
Sbjct: 193 DGLIDSLVHYVRGTIAD---YQPDDKATENCVCILHN 226
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 28/201 (13%)
Query: 1279 RLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSK 1337
+AA + F + + + L+ +L +E AL L +
Sbjct: 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
Query: 1338 ACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISL 1397
+ +++G + L ++L LE K+ L + + N K+ + +E + L
Sbjct: 87 KLEVAELNG--VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTEN 143
Query: 1398 MQSDLSIVVESAVCAFERLLD------------------DEQQVELVEGYDVVDLLVRLV 1439
+ S E LLD + + + ++D LV V
Sbjct: 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203
Query: 1440 SGT------NHRLVEATVCAL 1454
GT + + E VC L
Sbjct: 204 RGTIADYQPDDKATENCVCIL 224
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
Query: 639 LRSLVQVLNSSNEEN--QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696
L V +L + + AA+ + + + + + ++LL + V
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDP 755
AL L NK+ V L++ L +T ++ + L NL S+
Sbjct: 70 RAVCGALRNLVFED---NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790
+ ++ E +++ ++ + + + +A
Sbjct: 127 KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANG 161
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744
+ +L ++ + + SA A + K+ + + L++L K + D
Sbjct: 14 VSMLEADHMLPSRISA-AATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72
Query: 745 VAALANL-LSDPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKH 795
AL NL D D EV + V L +VL + KK + L L +
Sbjct: 73 CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 21/226 (9%)
Query: 587 RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646
A T+ + +++L D + + Q+ +K +G+ L+Q+L
Sbjct: 3 NADMEMTLERAVSMLEADHMLPSR-ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61
Query: 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM-VATQSARALGA 705
NE+ Q L +L D +A V +++L + Q L
Sbjct: 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121
Query: 706 LSRPTKTKTT---NKMSYIAEGDVKPLIKLAKTSSIDAAET--------AVAALANLLSD 754
LS K K + + E + P + A L N+ S
Sbjct: 122 LSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181
Query: 755 PDIAAEVLLE--DVVSALTRVLAEGTSEGKK------NASRALHQL 792
+ + ++ +L + ++ + N LH L
Sbjct: 182 GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 2010 GCLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP 2068
G L V ++ +N+ K G + + + ++TK V + ++P W E + P
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEK-KKTKKVDNELNPVWNEILEFDLRGIP 65
Query: 2069 --KGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEI 2125
L II K T G++ +G T+ + + + S + L N+ I
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATI 125
Query: 2126 EI 2127
++
Sbjct: 126 DL 127
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP 2067
G L V + + +L G ++ FC L +GN QT V +++PEW + FT F +
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFT--FPIK 69
Query: 2068 PKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIE 2126
L + ++ LGKV I + + + LE++
Sbjct: 70 DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129
Query: 2127 IIW 2129
+I+
Sbjct: 130 LIY 132
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 3e-12
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDV 2066
L +T+ K+ + + +T+ G ++T+ +++ SP+WK+ T V
Sbjct: 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLT--VIV 91
Query: 2067 PPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEG---VYSGLFNLNHDNNKDSSSRT 2122
P KLH S T LG + I + + + + L +K+ +
Sbjct: 92 TP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150
Query: 2123 LEIEIIWSN 2131
++ I
Sbjct: 151 GDLSICLDG 159
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 9e-12
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 15/128 (11%)
Query: 2012 LTVTIKRGNNLKQT-----MGTTNAFCRLTIGNGPPR--QTKVVSHSISPEWKEGFTWAF 2064
TV + R + + + T + + L I P +T+ ++ I+P W E F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE--F 62
Query: 2065 DVP-PKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTL 2123
+ + L I N TLG T + + F N + L
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-----QVTEMVL 117
Query: 2124 EIEIIWSN 2131
E+ + ++
Sbjct: 118 EMSLEVAS 125
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTW 2062
+ V + G L K +G ++ + R+T+ + QTK + S++P+W E
Sbjct: 20 RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL- 78
Query: 2063 AFDVPPKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLN-----HDNNK 2116
F V P+ +L +N + LG+V + + + TE H +
Sbjct: 79 -FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137
Query: 2117 DSSSR-TLEIEIIW 2129
S + L +++ +
Sbjct: 138 KSRVKGYLRLKMTY 151
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 3e-11
Identities = 46/345 (13%), Positives = 112/345 (32%), Gaps = 24/345 (6%)
Query: 503 EQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562
+ + ++ I I L + + S ++ +++ + I + GAV
Sbjct: 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKI 502
Query: 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622
L L + G+ + L R N L + ++ + ++L +
Sbjct: 503 ILEYLANKQDIGEPIRILGCRALTRML--IFTNPGLIFKKYSALNAIPFLFELLPRSTPV 560
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE-IV 681
+ +L+ + N ++ E S +++C + + +
Sbjct: 561 DDNPLHNDEQIKLTDNYEALLALTNLASSET------------SDGEEVCKHIVSTKVYW 608
Query: 682 NPCMRLLTSNTQMV---ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738
+ L+ + + + + K N + + + L+KL + S +
Sbjct: 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668
Query: 739 DAAETAVAALANLLSDPDIAAEVLLE--DVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796
++ A AN+ + + A+ LL +++ +V A+ + + R L F
Sbjct: 669 ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ-RLLMLFFGLF 727
Query: 797 PVGDVLKGNAQCRFV--VLTLVDSLNAMDMNGTDVADALEVVALL 839
V N + L D+LN G + + ++
Sbjct: 728 EVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVI 772
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 3e-09
Identities = 35/268 (13%), Positives = 80/268 (29%), Gaps = 29/268 (10%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
+ + + + +P K V + + + ++ ++ G + +L L ++
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIG 514
Query: 142 RKAAAEALYEVSSGGLSDD-HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG---- 196
++ + + + K + +P L++ L D+
Sbjct: 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574
Query: 197 -------ALRNLCGDKDGYWRATL-----EAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
AL NL + I L+ +N Q + L++ +M
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634
Query: 245 LA--------FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296
F P + LV+L+ ++ S RA AA +++ K
Sbjct: 635 SHPLTIAAKFFNLENPQSLR--NFNILVKLLQLSDVESQRAVAA-IFANIATTIPLIAKE 691
Query: 297 VVAAD-GVPVLIGAIVAPSKECMQGQRG 323
++ + I + QR
Sbjct: 692 LLTKKELIENAIQVFADQIDDIELRQRL 719
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 6e-06
Identities = 58/443 (13%), Positives = 140/443 (31%), Gaps = 55/443 (12%)
Query: 1273 LGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTS 1332
L ++ +A L + + + +L Q ++ +S ++E+++ AL L+
Sbjct: 305 LNVEDVQIYSALVLVKTWSFTKLTCINLK-QLSEIFINAISRRIVPKVEMSVEALAYLSL 363
Query: 1333 GNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIAN----PIAS 1388
+ K + ++ + E L ++ S ++G I+AN P
Sbjct: 364 KASVKIMIRSN--ESFTEILLTMIKSQKMTH----------CLYGLLVIMANLSTLPEEX 411
Query: 1389 ECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVE----LVEGYDVVDLLVRLVSGTNH 1444
+A E + + +++ L R + +
Sbjct: 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP 471
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE----LFRIL- 1499
+ V + + + + Q+ + G + L+ L L R+L
Sbjct: 472 NCKQQVVRIIYNITRSKNFIP-QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530
Query: 1500 -TNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS------------ALQALVNILEKP 1546
TN I + A + LF +L + AL AL N+
Sbjct: 531 FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE 590
Query: 1547 ----QSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHF-------QQDI 1595
+ + ++ + + + + +Q+ EL++++++ ++
Sbjct: 591 TSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650
Query: 1596 TTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDP 1652
+ LV+L + + Q+ I+T+ P K + + E A + D
Sbjct: 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVF-ADQ 709
Query: 1653 QPPHSLWESAALVLSNVLRFNTE 1675
L + ++ + +
Sbjct: 710 IDDIELRQRLLMLFFGLFEVIPD 732
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 5e-11
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 18/145 (12%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTW 2062
+ V + G L K +G ++ + R+T+ + QTK + S++P+W E
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL- 66
Query: 2063 AFDVPPKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNN-----K 2116
F V P+ ++ +N + LG+V + + + TE D
Sbjct: 67 -FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH 125
Query: 2117 DSSSR---TLEIEIIWSNRISDESI 2138
S + L++ + N DE+
Sbjct: 126 KSRVKGYLRLKMTYLPKNGSEDENA 150
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-11
Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDV 2066
+++T+ L K G+++ + + +G ++TK + +++P W+E F F+
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFH--FEC 72
Query: 2067 PPKGQKLHIICKSKNTFGKST------------LGKVTIQIDKVVTEGVYSGLFNLNHDN 2114
++ + ++ KS LG+ I++ + E +NL+
Sbjct: 73 HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--DVWYNLDKRT 130
Query: 2115 NKDSSSRTLEIEI 2127
+K + S + + I
Sbjct: 131 DKSAVSGAIRLHI 143
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 2010 GCLTVTIKRGNNLKQT-------------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEW 2056
G L + I +LK T + + L + + QT + SP W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 2057 KEGFTWAFDVPPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEG 2102
+ F DV G+K+ + G + TIQ ++++ G
Sbjct: 66 HDEFV--TDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 2e-10
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 2010 GCLTVTIKRGNNLKQT------------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWK 2057
G L V I L+ T + + +++ QT + P +
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 2058 EGFTWAFDVPPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNL 2110
E F +V G L + + G + T+Q +++ S F
Sbjct: 89 EEFC--ANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEG 139
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 3e-09
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 2010 GCLTVTIKRGNNLKQT-----MGTTNAFCRLTIGNGP--PRQTKVVSHSISPEWKEGFTW 2062
TV + R + + + T + + L I P ++T+ ++ I+P W E F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE- 76
Query: 2063 AFDVPPK-GQKLHIICKSKNTFGKSTLGKVTIQIDKV 2098
F + P L I N TLG T + +
Sbjct: 77 -FILDPNQENVLEITLMDANYVMDETLGTATFTVSSM 112
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L V I + +L K + G ++ + ++ + QTKV +++P + E F F
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ--FS 77
Query: 2066 VPP---KGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121
VP +KLH + F + +G+V + + E + +
Sbjct: 78 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKAD 137
Query: 2122 TLEIEI 2127
E+
Sbjct: 138 LGELNF 143
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWA 2063
G LTVTI + +NLK G ++ + + ++ + R +T + ++++P + E
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV-- 209
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGV 2103
FDV P + L I + G + +G + + G
Sbjct: 210 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 253
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L V I + L GT++ + ++ + +TKV +++P + E FT F
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT--FK 76
Query: 2066 VPP---KGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121
VP G+ L + + F K +G+ + ++ V V +L ++
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKL 136
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 1988 MLMKTCPPSFHERADSL--LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP 2041
L + D L +P G LTV I NLK G ++ + ++ +
Sbjct: 124 DLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 183
Query: 2042 PR----QTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNTFGKS-TLGKVTI 2093
R +T + ++++P + E F+ F+VP + ++ + + GK+ +GKV +
Sbjct: 184 KRLKKKKTTIKKNTLNPYYNESFS--FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 59.7 bits (143), Expect = 1e-08
Identities = 141/1146 (12%), Positives = 325/1146 (28%), Gaps = 105/1146 (9%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
I LL + S D R A L L D + + VV + L KN +
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLM----TELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
VQ L L Y T+ VD + + SD + ++ L ++
Sbjct: 64 ---VQNLAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGE 116
Query: 247 FGDSIPTVIDSGAVKALV--QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
+ + V + +L + +AL+ ++ + +V P
Sbjct: 117 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HP 174
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL---SQSPRLAAPV 361
++ ++ R + + ++ L+ +L + S
Sbjct: 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTY 234
Query: 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421
I A++ + +I ++V D++ ++E ++A S
Sbjct: 235 IQCIAAISRQAGHRIGEY--------LEKIIPLVVKFCNVDDDE-LREYCIQAFESFVRR 285
Query: 422 IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481
+ + + + +T + + +G S
Sbjct: 286 CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE-----NAMDADGGDDDDQGSDDEYS 340
Query: 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
S + + A + + + + P L+ + + + H
Sbjct: 341 DDDDMSWKVRRAAAKCLDAVVSTRHEML-PEFYKTVSPALISRFKEREENVKADVFHAYL 399
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL 601
L + +++ + A+ ++++ + L +
Sbjct: 400 SLLKQTRPVQSWLCDPDAM----------------EQGETPLTMLQSQVPNIVKALHKQM 443
Query: 602 LGDSPSSKAHVIKVLG---HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658
S ++ +L +VL AL + + L SS+ + A
Sbjct: 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND-----KSSSSNLKIDAL 498
Query: 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR----PTKTKT 714
S L + +V P + + + +++ L + + +
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS 558
Query: 715 TNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773
+ YI + + +L + E A++ + ++ + L + +
Sbjct: 559 FDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER 618
Query: 774 LAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADAL 833
L + +AL + D+ + ++ + + L
Sbjct: 619 LKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL-----GTL 671
Query: 834 EVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893
+ +L + Y A + + ++ L ++E + AI L+ L P
Sbjct: 672 SALDILIK-------NYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724
Query: 894 AVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL-LICAAKEHKKQSMDALDLSGYLK 952
+ L SI ++ S L+ A L A ++ +DL L
Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 953 PLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLL 1012
+Y+ + S S+ V + F + + L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF----IQDVKNSRSTDSIRL 836
Query: 1013 IISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV 1072
+ L + +G LE S L +++S E ++ L +
Sbjct: 837 LALLSLGEVGHHIDLSGQLELKSVILEAFSS------PSEEVKSAASYALGSIS------ 884
Query: 1073 LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIG 1132
+P + + S ++ ++ ++ S S + + A L+
Sbjct: 885 -VGNLPEYLPFVLQEITSQPK-RQYLLLHSLKEIISSASVVGLKPYVEN-IWALLLKHCE 941
Query: 1133 HIESDTPNLVALSEEFFLVRYPDEVV--LEKLFEIEDVRVGSTARKSIPLLVDILRPIPD 1190
E T N+VA + P+ ++ L+ S+ ++ + P P
Sbjct: 942 CAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISD-HPQPI 1000
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFS 1250
P L + D + + ++ +D + + L+
Sbjct: 1001 DPLLKNCIGDFLKTLEDPDLNVRRVALVT--FNSAAHNKPSLIRDLLDTVLPHLYNETKV 1058
Query: 1251 NPDLIR 1256
+LIR
Sbjct: 1059 RKELIR 1064
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 2e-08
Identities = 96/588 (16%), Positives = 194/588 (32%), Gaps = 75/588 (12%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP- 1139
I L LR+++V R + + ++ I LA+ + L+ + D
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLS--------TIALALGVERTRSELLPFLTDTIYDEDE 63
Query: 1140 -------NLVALSEEFFLVRYPDEVV--LEKLFEIEDVRVGSTARKSIPLLVDILRPIPD 1190
L + Y ++ LE L +E+ V A +S+ + P
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--- 120
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFS 1250
V L+ ++ G A G +S + +A + + FR L S
Sbjct: 121 -SDLEAHFVPLVKRLAGGDWFTSRTSA-CGLFSVCYPRVS----SAVKAELRQYFRNLCS 174
Query: 1251 NPDLIRYEASLSSLNQLIAVLHL-----------------GSRGARLSAARALHQLFDAE 1293
+ + A+ S L + VL L RL A A + A+
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI--AQ 232
Query: 1294 NIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLY 1353
+ DL +P L S + +L + +L+ +
Sbjct: 233 LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-----ITKTDLVPAFQ 287
Query: 1354 KILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCA- 1412
++ + + ++ + + I P I + SD + V+SA+ +
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 1413 ---FERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL-QM 1468
+L + +E ++ L + + + + L + + R+L Q
Sbjct: 348 IMGLSPILGKDNTIE-----HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS 1528
+ I++ D A+ + L L + + L M L D
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-------VEFFDEKLNSLCMAWLV-DHV 454
Query: 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
+ +A L ++EK + + +I +L+ P++ + + L
Sbjct: 455 YAIREAATSNLKKLVEKFGK----EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS-- 508
Query: 1589 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVAD 1636
E QDITTK+ + ++++AG + N++ K+L+KI +
Sbjct: 509 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 556
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 87/558 (15%), Positives = 164/558 (29%), Gaps = 81/558 (14%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
+PPL SL E T R A E+L +S S + E L +L
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISH-EHSPSDL-------EAHFVPLVKRLA--GGD 138
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
+ G +A L L S D + AAS L
Sbjct: 139 WFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLCSDDTPMVRRAAASKLGEFAKV 194
Query: 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306
+ S + L D SVR A +A ++ + + A +P L
Sbjct: 195 LELDN---VKSEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQED---LEALVMPTL 247
Query: 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA------LVVYLGELSQSPRLAAP 360
A S ++ + + LV L +
Sbjct: 248 RQAAEDKSWR---------VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE---- 294
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDA-RQIEDILVMLLKPHDNKLVQERVLEAMASLY 419
A++ A ++ + F + D QI + L+ + + V A+AS+
Sbjct: 295 -AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-----QHVKSALASVI 348
Query: 420 GNI--FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ 477
+ L + + + + + +VR +I +L + E IG R+ Q
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN-------EVIGIRQLSQ 401
Query: 478 LLISLLGLSSEQH----QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533
L+ + +E + ++ + +L Q+ + + L R
Sbjct: 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL---NSLCMAWLVDHVYAIR 458
Query: 534 EVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
E A L L E A + +P L + + + + L
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATI-----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 592 ATINQ-----LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646
+ +L + + + +V K L + + L ++ L ++
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL------QSEVKPILEKLT 567
Query: 647 NSSNEENQEYAASVLADL 664
+ + + +A L L
Sbjct: 568 QDQDVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 56/397 (14%), Positives = 124/397 (31%), Gaps = 44/397 (11%)
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECE 1319
SL + LI L RL++ + L + A + + +P L D + E
Sbjct: 8 SLYPIAVLIDELRNEDVQLRLNSIKKLSTI--ALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 1320 LEVA--LVALVKLTSGNTSKACLLTDIDGNL-----------LESLYKILSSNSSLELKR 1366
L +A L L G CLL ++ +ESL I +S +L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1367 NAAEL----------------CFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
+ L C + +++ + +E Q +L D +V +A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL-QMV 1469
+ + +++ + L S + V A + + + L +V
Sbjct: 186 SKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243
Query: 1470 KAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSL 1529
+ D + EL + + + P F L++ D
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-------EITKTDLVPAFQNLMK-DCEA 295
Query: 1530 WGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQE 1589
+ +A + E + + SQ++ + + + ++ ++ L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS--P 353
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI 1626
+D T ++ + + ++ + L+ +
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-04
Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 48/384 (12%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAA 145
F ++ TP+ + A+ L K L L + IP +L E R A
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 146 AEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ--DNVVQGFVTGALRNLCG 203
EA ++ + + V+PTL K+ + V F L+ G
Sbjct: 224 VEACVNIAQ------LLPQEDLEAL-VMPTLRQAAEDKSWRVRYMVADKF--TELQKAVG 274
Query: 204 DKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFG-DSIPTVIDSGAVKA 262
+ V L+ A ++ A+ + D VI S +
Sbjct: 275 PEITKTDL------VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 263 LVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQR 322
+ +LV + + V+++ A + LS K +P+ + + E R
Sbjct: 329 IKELV-SDANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEV----R 380
Query: 323 GQALQGHATRALANIYG---GMPALVVYLGELSQSP--RLAAPVADIIGALAYALMVFEQ 377
+ + + G +L+ + EL++ R+ + + + LA L
Sbjct: 381 LNIIS--NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL----- 433
Query: 378 KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437
F ++ + + L ++E + L F +W HA +
Sbjct: 434 -----GVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLV-EKFGKEWA-HATIIPKV 485
Query: 438 IGLITMATADVREYLILSLTKLCR 461
+ + R + + L
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSE 509
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTI-GNGPPRQTKVVSHSISPEWKEGFTWAFDVPP 2068
+ +T+ NL K + F ++ + G+G T V +++ P+W + + V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYD--LYVGK 64
Query: 2069 KGQKLHIICKSKNTFGK----STLGKVTIQIDKV 2098
+ I + K LG V + + +
Sbjct: 65 -TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 2010 GCLTVTIKRGNNLK---QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTW 2062
G L V + R +L + T + ++ + ++T++ ++ P +++
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV- 88
Query: 2063 AFDVPPKGQKLHI-ICKSKNTFGKST-LGKVTIQIDKV 2098
FD P+G+ L + + +G I ++++
Sbjct: 89 -FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 2005 LHCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKE 2058
H L V ++ NL G ++ + +L + + ++TK + S++PEW E
Sbjct: 26 AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 85
Query: 2059 GFTWAFDVPP--KGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGV 2103
F F + K ++L + + ++ +G ++ I ++ GV
Sbjct: 86 TFR--FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 131
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 37/303 (12%), Positives = 74/303 (24%), Gaps = 55/303 (18%)
Query: 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
+ L +LL+ + R +A VL + AV +
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLR-----------GGQDAVRLAIEFCS 64
Query: 569 SGGPKGQDASAMALTKL--IRAADSATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQ 625
+D A L ++ + + N L + L D S +A I+
Sbjct: 65 DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI 124
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM 685
K + + + A + + + +
Sbjct: 125 YSP--------KIVEQSQITAFDKSTNVRRATAFAI-----------SVINDKATIPLLI 165
Query: 686 RLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745
LL V +A A+ +++ + + + A+
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAI 213
Query: 746 AALANLLSDPDIAAEVLL-----EDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGD 800
L+ VL V + E G K L +L F +
Sbjct: 214 IGLSYR--KDKRVLSVLCDELKKNTVYDDIIEAAGE---LGDKTLLPVLDTMLYKFDDNE 268
Query: 801 VLK 803
++
Sbjct: 269 IIT 271
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 78/309 (25%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSS--------GGLSDDH-------------VGMK 165
L LL ++ R ++A L SD + + +
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84
Query: 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225
+ V L + N + V+ + V+
Sbjct: 85 KKCEDNVFNILNNMAL--NDKSACVRATAIESTAQR-----CKKNPIYSPKIVEQSQITA 137
Query: 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEA 285
+ + A ++ + D + L+ L+ ++ + VR AA A+
Sbjct: 138 FDKSTNVRRATAFAISVIN-----------DKATIPLLINLL-KDPNGDVRNWAAFAI-- 183
Query: 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345
+D + + ++E ++ A L+ ++
Sbjct: 184 -------NINKYDNSDIRDCFVEMLQDKNEE---------VRIEAIIGLSYR--KDKRVL 225
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
L + + + + + G L + + +L +L D+
Sbjct: 226 SVLCDELKKNTVYDDIIEAAGELG------------------DKTLLPVLDTMLYKFDDN 267
Query: 406 LVQERVLEA 414
+ ++
Sbjct: 268 EIITSAIDK 276
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L V I + L GT++ + ++ + +TKV +++P + E FT F
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT--FK 91
Query: 2066 VPP---KGQKLHIICKSKNTFGK-STLGKVTIQIDKV 2098
VP G+ L + + F K +G+ + ++ V
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 2010 GCLTVTIKRGNNLK-QTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAF 2064
L + I G L + GT + + ++++ ++T+ V P + E F F
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFF--F 84
Query: 2065 DVPP--KGQKLHIICKSKNTFGKST--LGKVTIQIDKVVT 2100
V ++L + ++ + + + +G ++ + ++T
Sbjct: 85 PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT 124
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L V I + L GT++ + ++ + +TKV +++P + E FT F
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT--FK 99
Query: 2066 VPP---KGQKLHIICKSKNTFGK-STLGKVTIQIDKV 2098
VP G+ L + + F K +G+ + ++ V
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 2005 LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEW 2056
L P + V I + NLK GT++ + ++ + ++T +++P +
Sbjct: 9 LCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIF 68
Query: 2057 KEGFTWAFDVPP---KGQKLHIICKSKNTFGKS-TLGKVTI 2093
E F FD+P + + I K+ ++ +GK+ +
Sbjct: 69 NESFA--FDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 2005 LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEW 2056
L +P G LTV I NLK G ++ + ++ + ++T + ++++P +
Sbjct: 18 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77
Query: 2057 KEGFTWAFDVPP---KGQKLHIICKSKNTFGKS-TLGKVTI 2093
E F+ F+VP + ++ + + GK+ +GKV +
Sbjct: 78 NESFS--FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-06
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 1992 TCPPS-FHERADSLLHCLPGCLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPPRQTKVVS 2049
C S + L V+ R +L T+A+ ++ G G +T VV
Sbjct: 375 ECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFG-GQEFRTGVVW 433
Query: 2050 HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLF 2108
++ +P W + + + G L + + LG G +
Sbjct: 434 NNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP----HSGFHEVTC 489
Query: 2109 NLNH 2112
LNH
Sbjct: 490 ELNH 493
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 2005 LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEW 2056
L LTV + + +L G ++ + ++ + + ++T V + + +
Sbjct: 23 LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82
Query: 2057 KEGFTWAFDVPP---KGQKLHIICKSKNTFGKS-TLGKVTI 2093
E F FD+P + + + ++ +G++ +
Sbjct: 83 NELFV--FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 2010 GCLTVTIKRGNNLK---QTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTW 2062
L V +K + L + +N + + + R+T + +++P + E
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR- 81
Query: 2063 AFDVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
+++P + L FG++T LG+ IQ+D
Sbjct: 82 -YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 2010 GCLTVTIKRGNNLK-QTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAF 2064
G L + + +L + N + + + R+TK+ + +P + E +
Sbjct: 20 GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLV--Y 77
Query: 2065 DVPP----KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
+ ++L + S + ++ LG +T+ +
Sbjct: 78 SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTI---GNGPPRQTKVVSHSISPEWKEGFTWAFDV 2066
L VT G + + + ++ QT + + W+EG +
Sbjct: 26 AELFVTRLEAVTSNHD-GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV--LPL 82
Query: 2067 PP---KGQKLHIICKSKNTFGK-STLGKVTIQIDKV 2098
L + ++ + F + S G++ + +D
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 53/234 (22%)
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDA 577
+ ++ L+ S R AA+ L + AV + LK + A
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRA 69
Query: 578 SAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637
+A AL ++ D + L+ L + + LG + +
Sbjct: 70 AADALGQI---GDERAVEPLIKALKDEDGWVRQSAAVALGQI--------------GDER 112
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697
+ L++ L + + AA L G + + V P ++ L V
Sbjct: 113 AVEPLIKALKDEDWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
+A ALG + + KLA+T + A + AV L
Sbjct: 162 SAADALGEIGGER--------------VRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 42/183 (22%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSS--------GGLSDDHVGMKIFVTEG------- 171
+ + L+ +S R+AAA AL ++ L D+ ++ +
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 80
Query: 172 -VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA 230
V L L ++ V+ AL + G RA V+ ++ L ++
Sbjct: 81 RAVEPLIKALKDEDGW---VRQSAAVALGQI-----GDERA------VEPLIKALKDEDW 126
Query: 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKS 290
+ AA L + D AV+ L++ + ++ D VR SAADAL + +
Sbjct: 127 FVRIAAAFALGEIG-----------DERAVEPLIKAL-KDEDGWVRQSAADALGEIGGER 174
Query: 291 IKA 293
++A
Sbjct: 175 VRA 177
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQ 2071
L V +K+ N + L + N + T + P W++ F F++
Sbjct: 7 LCVGVKKAKFDG-AQEKFNTYVTLKVQN--VKSTTIAVRGSQPSWEQDF--MFEINRLDL 61
Query: 2072 KLHIICKSKNTFGKSTLGKVTIQIDKV 2098
L + +K + +G V I + +
Sbjct: 62 GLTVEVWNKGLIWDTMVGTVWIPLRTI 88
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWA 2063
L TI R L + G + + +L + +TK + ++ +P W E +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY- 87
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
+ + + L I ++ FG + +G+ + K+
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWA 2063
L VTI +L ++ N + ++ + R+TK V ++ P+W + F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI-- 75
Query: 2064 FDVPP----KGQKLHIICKSKNTFGKST---LGKVTIQIDKVVTEGV 2103
+ + + L I + + LG++ I+++ + +
Sbjct: 76 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWA 2063
L VTI +L ++ N + ++ + R+TK V ++ P+W + F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI-- 78
Query: 2064 FDVPP----KGQKLHIICKSKNTFGKST---LGKVTIQIDKVVTEGV 2103
+ + + L I + + LG++ I+++ + +
Sbjct: 79 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 125
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-05
Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 31/273 (11%)
Query: 462 REVGIWEA---IGKREGIQLLISLLGLSSEQHQEYAVQLIAIL--TEQVDDSKWAITAAG 516
++G I ++E + LL+SLL + V+L+ L + + +
Sbjct: 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM 166
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQ 575
G+ L+ LL + R +L L + I+ V A L ++ G G
Sbjct: 167 GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGG 226
Query: 576 DASAMALTKLIRAADSATINQ-----------LLALLLGDSPSSKAHVIKVLGHVLTMAL 624
L L + NQ + +S KV L + L
Sbjct: 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL 286
Query: 625 QEDLV------------QKGSAANKGLRSLVQVLNSSNEENQ--EYAASVLADLFSMRQD 670
LV QK L+ L +L ++ + ++++ Q
Sbjct: 287 VRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346
Query: 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703
A+ + R M +
Sbjct: 347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 2010 GCLTVTIKRGNNLK-QTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAF 2064
L V + NL + ++ + R+ + R+T V +++P + + F F
Sbjct: 24 NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFD--F 81
Query: 2065 DVPP---KGQKLHIICKSKNTFGK---STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDS 2118
V + + L + K+ F LGKV + + ++ ++L D+ S
Sbjct: 82 SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPSS 141
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 2010 GCLTVTIKRGNNLKQTM---------GTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKE 2058
LTV + +L + +N + ++ + +QT V + P ++E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 2059 GFTWAFDVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
+T F++P + + L + + F + +GKV++ + +V
Sbjct: 86 RYT--FEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 2005 LHCLPGCLTVTIKRGNNL--KQTMGTTNAFCRL-------------TIGNGPPRQTKVVS 2049
++ G L + I + NL + G ++ F ++ R+TK V
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 2050 HSISPEWKEGFTWAFDVPP----KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
S++PEW + + + L + + F + LG+V I +
Sbjct: 73 KSLNPEWNQTVI--YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWA 2063
G L V I R +L G ++ F +L + +T++ +++PE+ E F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF-- 94
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKS-TLGKVTI 2093
+D+ + L I + + +G +
Sbjct: 95 YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
LTV I + L K GT++ F ++ + +TKV +++P W E F F+
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFL--FE 83
Query: 2066 VPP----KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
P + L++ + F ++ +G+V+I ++KV
Sbjct: 84 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 42/158 (26%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
+ P S + E+ R+ + AL + D+ L + L+ ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTAL-----SRMGDE-----------AFEPLLESLSNEDWR 57
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
++G + N RA V+ ++ LL D+ +S AA L ++
Sbjct: 58 ---IRGAAAWIIGNF-----QDERA------VEPLIKLLEDDSGFVRSGAARSLEQI--- 100
Query: 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284
G A+ +L + R A + LE
Sbjct: 101 -G-------GERVRAAMEKLA-ETGTGFARKVAVNYLE 129
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 51/207 (24%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
+A+ I L+ + A L + DE + PL+ LK E
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQI-GDER---------AVEPLIKALKDEDGWV 92
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201
R++AA AL ++ E V L L ++ V+ AL +
Sbjct: 93 RQSAAVALGQIGD---------------ERAVEPLIKALKDEDWF---VRIAAAFALGEI 134
Query: 202 CGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVK 261
GD+ V+ ++ L ++ + +AA L +
Sbjct: 135 -GDERA----------VEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRA 172
Query: 262 ALVQLVGQNNDISVRASAADALEALSS 288
A+ +L + R A + LE S
Sbjct: 173 AMEKLA-ETGTGFARKVAVNYLETHKS 198
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 42/206 (20%)
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDA 577
+ ++ L+ S R AA+ L + AV + LK + A
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRA 64
Query: 578 SAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV--------LTMALQED-- 627
+A AL ++ D + L+ L + + LG + L AL+++
Sbjct: 65 AADALGQI---GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDW 121
Query: 628 LVQKGSA-------ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680
V+ +A + + L++ L + ++ AA L G + + +
Sbjct: 122 FVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL-----------GEIGGERV 170
Query: 681 VNPCMRLLTSNTQMVATQSARALGAL 706
+L + T + L
Sbjct: 171 RAAMEKLAETGTGFARKVAVNYLETH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 42/183 (22%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSS--------GGLSDDHVGMKIFVTEG------- 171
+ + L+ +S R+AAA AL ++ L D+ ++ +
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75
Query: 172 -VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA 230
V L L ++ V+ AL + G RA V+ ++ L ++
Sbjct: 76 RAVEPLIKALKDEDGW---VRQSAAVALGQI-----GDERA------VEPLIKALKDEDW 121
Query: 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKS 290
+ AA L + D AV+ L++ + ++ D VR SAADAL + +
Sbjct: 122 FVRIAAAFALGEIG-----------DERAVEPLIKAL-KDEDGWVRQSAADALGEIGGER 169
Query: 291 IKA 293
++A
Sbjct: 170 VRA 172
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 44/233 (18%), Positives = 67/233 (28%), Gaps = 60/233 (25%)
Query: 581 ALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640
D + + L DS + LG + + +
Sbjct: 3 GSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKI--------------GDERAVE 48
Query: 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSA 700
L++ L + + AA L G + + V P ++ L V +A
Sbjct: 49 PLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAA 97
Query: 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID------------AAETAVAAL 748
ALG + V+PLIK K E AV L
Sbjct: 98 VALGQIGDER--------------AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPL 143
Query: 749 ANLLSDPDI-----AAEVLL----EDVVSALTRVLAEGTSEGKKNASRALHQL 792
L D D AA+ L E V +A+ ++ GT +K A L
Sbjct: 144 IKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 196
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 127 IPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK 185
+ L SLL KSE+ + A+A +++ + + ++P L+ ++
Sbjct: 71 LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE---------LVKSMIPVLFANYRIGDE 121
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
+ + V+ AL + L A V + +LSS N + A + + +
Sbjct: 122 K---TKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
+ + + ++ L+ + D VRASA +AL L++ + K +K V+
Sbjct: 174 NSFKYV-----NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVIK 221
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-04
Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 24/214 (11%)
Query: 424 LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK--REGI-QLLI 480
L Q + + LI ++T ++ LS L ++ + I +
Sbjct: 37 LEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECL 96
Query: 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVL 540
+ +G SS + LI + + + W +P L LL++ E A L
Sbjct: 97 NNIGDSSPLIRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGAL 152
Query: 541 WILCCHSEDIRACVES-------AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593
+C ED ++S +P FL K PK + + + + I + A
Sbjct: 153 QKIC---EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 594 -------INQLLALLLGDSPSSKAHVIKVLGHVL 620
I L AL + P + +V + L +L
Sbjct: 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 2010 GCLTVTIKRGNNLK---QTMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAF 2064
V IK L + T++ + ++TI +T+V+ ++ P + E FT F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT--F 79
Query: 2065 DVPP----KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
P + LH S + F + +G+V I + +
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTW 2062
+ I + +NL R+ + +T+ + S + + E F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW- 101
Query: 2063 AFDVPP---KGQKLHIICKSKNTFGKST-LGKVTI 2093
+ + L + + + LG I
Sbjct: 102 -VSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2138 | |||
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.98 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.97 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.97 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.93 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.92 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.88 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.85 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.85 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.84 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.83 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.83 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.83 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.81 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.77 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.76 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.75 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.74 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.74 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.73 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.73 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.69 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.69 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.68 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.66 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.65 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.61 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.61 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.59 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.59 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.58 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.57 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.56 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.55 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.54 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.54 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.53 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.53 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.52 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.52 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.52 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.51 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.5 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.49 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.49 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.49 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.47 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.47 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.46 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.46 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.45 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.45 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.45 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.45 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.44 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.44 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.43 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.41 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.4 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.39 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.39 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.38 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.37 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.37 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.37 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.36 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.36 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.36 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.35 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.32 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.32 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.26 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.25 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.25 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.23 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.23 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.21 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.19 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.16 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.14 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.12 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.04 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.04 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 98.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.91 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.89 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.85 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.7 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.54 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.54 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.53 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.31 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.19 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.98 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.93 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.88 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.83 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.8 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.79 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.79 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.75 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.72 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.63 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.6 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 97.36 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.35 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.34 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 97.34 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.25 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.23 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.16 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.09 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.82 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.8 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.76 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.73 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.56 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.53 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.22 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.11 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.04 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.0 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.81 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.38 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 93.87 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 93.53 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 91.44 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 90.92 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 90.78 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 90.5 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 90.28 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 89.85 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.85 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 89.06 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 88.21 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 87.91 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 86.47 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 84.74 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 81.85 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 81.57 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 81.35 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.97 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.55 |
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=473.60 Aligned_cols=689 Identities=16% Similarity=0.166 Sum_probs=526.0
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 127 IPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 127 Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
+..|++++.+ .+.+-|+.|+++|..|++ ++.|.+.|+++|++..|.+++++.. ++.+...|.++|..+|.+
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~r-----e~aga~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAK-----EQTGAELLYKDHCIAKVASLTKVEK--DQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSS-----CHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeec-----cccchHHHHhCchHHHHHHHHhccC--chhHHHHHHHHHHHHHhc
Confidence 5678888876 488999999999999995 8899999999999999999999633 356899999999999999
Q ss_pred CCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh--hcCCCcch------hh------ccchHHHHHHHhccC
Q 000124 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML--AFGDSIPT------VI------DSGAVKALVQLVGQN 270 (2138)
Q Consensus 205 ~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~--~~~e~r~~------l~------~~GaL~~LL~LL~s~ 270 (2138)
+..|...+.+.-|+++++.+|.+.++++...++.+++.+.+ ...+.+.. +. -...+..|+.++..
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 159 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD- 159 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc-
Confidence 99999999999999999999999999999999999998874 11111111 11 12456666666652
Q ss_pred CCHhHHHHHHHHHHHHhhcCH-----HHHHHHHhcCCHHHHHHhhcCCch----hhhhhhhhhhhHHHHHHHHHHhhcCc
Q 000124 271 NDISVRASAADALEALSSKSI-----KAKKAVVAADGVPVLIGAIVAPSK----ECMQGQRGQALQGHATRALANIYGGM 341 (2138)
Q Consensus 271 sd~~vr~~Aa~aL~nLs~~s~-----e~Rk~i~e~ggL~~LI~LL~s~s~----e~mq~~~~~alqe~Al~ALanIsGgi 341 (2138)
..+...+++...++..++- +....+...+|+..|++....-.. ..++ .+.+ .+.++..||++++.
T Consensus 160 --~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~-~~~~-~r~~~~~~l~~~~~-- 233 (810)
T 3now_A 160 --RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMD-ITGS-SSTIASVCLARIYE-- 233 (810)
T ss_dssp --TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCC-CCTT-HHHHHHHHHHHHHH--
T ss_pred --cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCC-CChh-HHHHHHHHHHHHHH--
Confidence 2333344555555544311 122236667899999997765211 0111 1222 56666666666652
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC
Q 000124 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421 (2138)
Q Consensus 342 s~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n 421 (2138)
.+.++ ..++.|. ..+..++...+...+.+ -+..++.+++++...
T Consensus 234 ------------------------------~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~a~~alt~i~~g 277 (810)
T 3now_A 234 ------------------------------NMYYD----EAKARFT-DQIDEYIKDKLLAPDME-SKVRVTVAITALLNG 277 (810)
T ss_dssp ------------------------------TCCSH----HHHHHHH-HHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHSS
T ss_pred ------------------------------Hhccc----hhHHHHH-HHHHHHHHHHhccCChH-hHHHHHHHHHHHhcC
Confidence 22222 1123332 25667888888777776 578999999999655
Q ss_pred -chhHHHHh-hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 422 -IFLSQWVS-HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 422 -~~~~~~L~-e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
++....+. ..|.++.++.++.+.++.+|..|+.++.+.+.+ +..+..+.+.| ++.|+.+++++++.+|..|+.+|+
T Consensus 278 ~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcC-cHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777666 668899999999999999999999999998887 78888888766 599999999999999999999999
Q ss_pred HHhhcCc-hhHHHHHhcCC----chHHHHHhhhC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh
Q 000124 500 ILTEQVD-DSKWAITAAGG----IPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2138)
Q Consensus 500 nLa~~s~-e~r~~I~~aGa----Ip~LV~LLks~--d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~ 572 (2138)
+++.... +.....++.|+ ++.|+++|.++ +++++++|+++|.+|+.+.+....++.+.|++|.|+++++++++
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 9985322 23323344455 45577777777 89999999999999998776666677678999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH---hhhcccchhhHHHHhhcC
Q 000124 573 KGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ---KGSAANKGLRSLVQVLNS 648 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~---~~l~~~GaI~aLV~LLks 648 (2138)
.+++.++++|.|++...+ .+.++.+.++.+..+.++... +..+..+.++ +.+.+.|+++.|+.++++
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~---------~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE---------HELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS---------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc---------cccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 999999999999997532 344455555555544332110 1122234444 456788999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh-hHHhcCChh
Q 000124 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM-SYIAEGDVK 727 (2138)
Q Consensus 649 ~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~-~I~~~G~V~ 727 (2138)
+++++|+.|+++|.||+. +++++..+++.|++++|+.+|+++++.+|..|++||.||+.+..+ .... .....|+++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p--~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP--EVSFSGQRSLDVIR 583 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHTTTHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh--hhhhcchhhhcHHH
Confidence 999999999999999997 788999999999999999999999999999999999999873221 1110 001246999
Q ss_pred hHHhhhhcC-CHHHHHHHHHHHHHhhCC-chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhh
Q 000124 728 PLIKLAKTS-SIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2138)
Q Consensus 728 ~Lv~LL~s~-s~~Vr~eAl~ALaNLa~~-~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~ 805 (2138)
+|+.+|.++ +...+.+|+++|+||+.. ++.+..+++.|++++|+.++.++++.+|+.|+++|+||+.+. .....
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~ 659 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM 659 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH
Confidence 999999865 445566899999999986 577889999999999999999999999999999999999863 33333
Q ss_pred hhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHH
Q 000124 806 AQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIE 883 (2138)
Q Consensus 806 i~~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Aie 883 (2138)
+.. .+.++.|+.++... +...+.+|..+|++++. +......+. ..++|+++|+.++.+++..+|+.|+.
T Consensus 660 ~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii-------~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKIL-------AIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHH-------TSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-------HHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 333 67899999999764 45679999999999997 332222222 12679999999999999999999999
Q ss_pred HHHHhhccC
Q 000124 884 ILSRLCGDQ 892 (2138)
Q Consensus 884 iL~~L~~~~ 892 (2138)
+|.|+....
T Consensus 731 aL~NL~~~s 739 (810)
T 3now_A 731 IILNMINAG 739 (810)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 999998743
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=453.10 Aligned_cols=708 Identities=16% Similarity=0.148 Sum_probs=557.7
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccC
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKD 114 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~ 114 (2138)
++.++|.+|++.+.+.+.+.+.|+.|...|..|++++.++..++. .||+..|.+++++ .++++...|.++|..||++
T Consensus 3 ~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 3 KTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Confidence 678899999999998888889999999999999999877777665 5999999999999 7899999999999999999
Q ss_pred chhHH-HHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc---CCCCCChhhH-HHHHHc------CcHHHHHHhhCCC
Q 000124 115 EDLRL-KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSS---GGLSDDHVGM-KIFVTE------GVVPTLWDQLNPK 183 (2138)
Q Consensus 115 e~~r~-~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~---~~~nkd~~gr-e~Ivea------G~Ip~Ll~LL~s~ 183 (2138)
+..|. .+.+.-+++.+++++.+++++...+++..+..+-. +++++.+.+. +.++.. ..+..|++++.+.
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR 160 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 86665 45556889999999999888887777766655432 2333333222 122221 2778888888877
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchhH-HHHHhCcHHHHHHhhccC-----------CHHHHHHHHHHHHHHHhhcC-CC
Q 000124 184 NKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSD-----------NAAAQSNAASLLARLMLAFG-DS 250 (2138)
Q Consensus 184 s~ed~~V~e~Al~aL~nLcs~~e~r~~-aI~e~GGI~~Lv~lL~s~-----------s~evq~~A~~aL~nLs~~~~-e~ 250 (2138)
..+ ...+..++..|..-....+.++. -....+|+..++..-... .+++|..+.-+|.++...-. +.
T Consensus 161 ~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 161 TIS-GAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TSC-HHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred ccC-hhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 644 35688899988877766553322 244568999998876551 36799999999999984211 11
Q ss_pred cchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHH-hcCCHHHHHHhhcCCchhhhhhhhhhhhHHH
Q 000124 251 IPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV-AADGVPVLIGAIVAPSKECMQGQRGQALQGH 329 (2138)
Q Consensus 251 r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~-e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~ 329 (2138)
.++.....+-.++-..+. ..+...+..|.+++.++....++....+. ..|.++.|+.++.+++.. .|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~---------~q~~ 309 (810)
T 3now_A 240 AKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL---------QQRV 309 (810)
T ss_dssp HHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH---------HHHH
T ss_pred hHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH---------HHHH
Confidence 123444445555555665 45567778899999999988777777665 789999999999987754 6788
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~ 409 (2138)
|.+++.++++.. ..+..+...++ ++|+.++++.+. .+|.
T Consensus 310 A~~al~~aa~~~---------------------------------------~~R~~I~~~gv-~~L~~Ll~s~~~-~vr~ 348 (810)
T 3now_A 310 ACECLIAASSKK---------------------------------------DKAKALCEQGV-DILKRLYHSKND-GIRV 348 (810)
T ss_dssp HHHHHHHHTTSH---------------------------------------HHHHTTHHHHH-HHHHHHTTCSCH-HHHH
T ss_pred HHHHHHHHcCCc---------------------------------------HHHHHHHHcCc-HHHHHHHcCCCH-HHHH
Confidence 999998876521 01222334455 999999997765 4899
Q ss_pred HHHHHHHHhhcCc--hhHHHHhhhc----hHHHHHHHHccC--CHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHH
Q 000124 410 RVLEAMASLYGNI--FLSQWVSHAE----AKKVLIGLITMA--TADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLI 480 (2138)
Q Consensus 410 ~Aa~AL~~L~~n~--~~~~~L~e~~----gI~~LV~LL~ss--s~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV 480 (2138)
+++.+|.++..+. +......+.+ .++.++.++.++ +.+++..++++|..++.+ ++.+..++ +.|++|.|+
T Consensus 349 ~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV 427 (810)
T 3now_A 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALM 427 (810)
T ss_dssp HHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHH
Confidence 9999999996432 2221222233 356688888887 889999999999999998 45555555 678999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCch-----------------------------hH---HHHHhcCCchHHHHHhhhC
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDD-----------------------------SK---WAITAAGGIPPLVQLLEAG 528 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-----------------------------~r---~~I~~aGaIp~LV~LLks~ 528 (2138)
+++++++..++..++++|.||+...+. .+ ..+++.|++|.|+.+|+++
T Consensus 428 ~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~ 507 (810)
T 3now_A 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507 (810)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC
T ss_pred HHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC
Confidence 999999999999999999999984321 12 5678899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcch
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSS 608 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V 608 (2138)
++.+|+.|+++|+||+. +++.|..+.+.|++++|+.+++++++..++.|+++|.|++.+.+. ..
T Consensus 508 s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---------------~~ 571 (810)
T 3now_A 508 SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---------------EV 571 (810)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------HH
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---------------hh
Confidence 99999999999999996 566899999999999999999999999999999999999865321 00
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL 687 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~L 687 (2138)
+ . .. . ...|++++|+.++.++ +...+..|+++|.||+..+++.+..+++.|+++.|+.+
T Consensus 572 ---~---~-------~~----~---~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L 631 (810)
T 3now_A 572 ---S---F-------SG----Q---RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631 (810)
T ss_dssp ---H---T-------TT----H---HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ---h---h-------cc----h---hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 0 0 00 0 0124799999999876 45566789999999999778899999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHh-cCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHh-c
Q 000124 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL-E 764 (2138)
Q Consensus 688 L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~-~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~-~ 764 (2138)
+.++++.+++.|+++|+||+.+ . ..+..+.+ .|.+++|+.++.+.+.+++.+|+++|+||+. ++...+.+++ .
T Consensus 632 L~s~~~~Vq~~A~~~L~NLa~~--~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 632 LMEDHLYLTRAAAQCLCNLVMS--E--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp HHSCCTTHHHHHHHHHHHHTTS--H--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred HcCCCHHHHHHHHHHHHHHhCC--h--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 9999999999999999999872 2 45555554 7899999999999999999999999999998 7888888888 8
Q ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCC-CCchhHHHHHHHHHHHhh
Q 000124 765 DVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD-MNGTDVADALEVVALLAR 841 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~-~~~~~~~~AL~ALa~La~ 841 (2138)
|++++|++++.++++++|+.|+|+|.|++... ++....+...|++++|+++++..+ .+.+....|+++|.++-.
T Consensus 708 g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 708 SWLDILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999853 556777778999999999997542 345677888899888874
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=371.79 Aligned_cols=506 Identities=21% Similarity=0.213 Sum_probs=414.1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.|++|.|+.+|+++++.++..|+.+|.+++.+++++..+... |+++.|+++|.+ ++++++..|+.+|.+|+. +
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-----~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----C
Confidence 689999999999999999999999999999998888777765 899999999986 489999999999999996 4
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
+.++..+.+.|++|.|++++.+++ +.++..++++|.+++.+++.....+.+.|+++.|+.+|.+++++++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.+++..+++.+..+.+.|+++.|+.++..+.+...+..+..+|.+++. +++.+..+.+.|+++.|+.++.+++.+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChH----
Confidence 999977777778888899999999999866676778888999999998 578888999999999999988776533
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
++..+.++|.+++.. .. ...
T Consensus 243 -----~~~~a~~~L~~l~~~--------------------------------------~~-~~~---------------- 262 (529)
T 1jdh_A 243 -----LVQNCLWTLRNLSDA--------------------------------------AT-KQE---------------- 262 (529)
T ss_dssp -----HHHHHHHHHHHHHTT--------------------------------------CT-TCS----------------
T ss_pred -----HHHHHHHHHHHHhcC--------------------------------------Ch-hhH----------------
Confidence 555666666665421 00 000
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 401 s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
...++++.|+.++.+.+++++..++.+|.+++.++++.+..+.+.|+++.|+
T Consensus 263 ----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 263 ----------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp ----------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred ----------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 0124456677777777888899999999999988777888899999999999
Q ss_pred HHhcC--CchhhHHHHHHHHHHHhhcCch---hHHHHHhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 481 SLLGL--SSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 481 ~LL~s--~d~~Vr~~Aa~aL~nLa~~s~e---~r~~I~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
+++.. .++.++..++.+|+||+..+++ .+..+...|+++.|+++|++++ +.++..++++|+|++.+ +..+..+
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 393 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHH
Confidence 99975 3478999999999999875444 4678889999999999999885 69999999999999985 4456778
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
.+.|+++.|+.+++++++++|..++|++.|...... ...+++...+..++++++.. ++ .+..+.
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~------------~~~~~i~~~~~~al~~L~~~---~~-~~~~l~ 457 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------------VRMEEIVEGCTGALHILARD---VH-NRIVIR 457 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTT------------BCHHHHHHHHHHHHHHHTTS---HH-HHHHHH
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc------------ccHHHHHHHHHHHHHHHhcC---ch-HHHHHh
Confidence 889999999999999999999999999998321110 01123444566777776542 22 234467
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
+.|+++.|+.++++++++++..++++|.+++. +++.+..+.+.|+++.|.+++.+.++.++..|.++|.+|+
T Consensus 458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred ccCCccHHHHHHcCCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999997 6888999999999999999999999999999999999874
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=367.65 Aligned_cols=508 Identities=18% Similarity=0.195 Sum_probs=415.5
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 122 ~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
...|+++.|+++|.++++.+|..|+.+|.+++. +..++..++.. |+++.|+++|.+++ ++.++..++++|++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-----~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 86 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-----CCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 346889999999999999999999999999996 34566677754 89999999997543 45689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
++..++ ....+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 87 ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 164 (529)
T 1jdh_A 87 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 164 (529)
T ss_dssp HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHH
Confidence 988765 55788899999999999999999999999999999997767777778889999999999984 5678899999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
.+|.+++..+++.+..+.+.|+++.|++++.+++.+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~-------------------------------------------- 200 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE-------------------------------------------- 200 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH--------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH--------------------------------------------
Confidence 999999987789999999888888888876543211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~L 440 (2138)
..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 201 ---------------------------------------------~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~l 235 (529)
T 1jdh_A 201 ---------------------------------------------KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235 (529)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 13334445566666666666777788899999999
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchH
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~ 520 (2138)
+..++..++..++.+|.+++...+.. ....++++.|++++++.++.++..++++|++|+.++++++..+.+.|+++.
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 99999999999999999999874321 233588999999999999999999999999999977789999999999999
Q ss_pred HHHHhhhC--CHHHHHHHHHHHHHHhcCChh---HHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000124 521 LVQLLEAG--SQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 521 LV~LLks~--d~~vre~Aa~aL~nLs~~sd~---~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
|+++|.+. ++.+++.++.+|+||+.++.. .+..+.+.|+++.|+.++++++ +.++..++++|+|++.+++
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~---- 388 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 388 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence 99999863 489999999999999875432 5677888999999999999876 5899999999999974321
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000124 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2138)
Q Consensus 595 ~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~ 674 (2138)
.+ ..+.+.|+++.|+.+++++++++|..|++++.|.+..
T Consensus 389 -------------~~---------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~------- 427 (529)
T 1jdh_A 389 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------- 427 (529)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHC-----------CB-------
T ss_pred -------------hh---------------------HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-------
Confidence 00 1234567899999999988999999999999984321
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 675 Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
.|+ ..+.++..++.+|++++. .. .++..+.+.|++++|+.++.+++++++..|+.+|++|+.+
T Consensus 428 ---~~~----------~~~~i~~~~~~al~~L~~--~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 428 ---EGV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp ---TTB----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ---ccc----------cHHHHHHHHHHHHHHHhc--Cc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 111 124466778999999986 23 6778899999999999999999999999999999999999
Q ss_pred chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 755 ~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
++.+..+.+.|+++.|.+++.+.++++++.|.++|.+|
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999987
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=388.73 Aligned_cols=543 Identities=18% Similarity=0.201 Sum_probs=436.8
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.+++.+++.|++++.+++..++..+... .+..+ ..|+++.|+++|.++++.+|+.|+.+|.+|+. +...
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-----~~~~ 183 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEAS 183 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-----SHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-----CChh
Confidence 5789999999999999999888888754 22233 37999999999999999999999999999996 3445
Q ss_pred HHHHHH-cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000124 164 MKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242 (2138)
Q Consensus 164 re~Ive-aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~n 242 (2138)
+..++. .|+++.|+++|..+. +..++..|+.+|.+|+...+. ...+.+.|+++.|+.+|.++++.++..++.+|.+
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666664 489999999997543 466899999999999987654 5778889999999999999999999999999999
Q ss_pred HHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhh
Q 000124 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQR 322 (2138)
Q Consensus 243 Ls~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~ 322 (2138)
|+...+..+..+.+.|+++.|+.++.+ .+..++..+..+|.+++..+++.+..+.+.++++.|+.++.+.+.
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~------- 332 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY------- 332 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-------
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-------
Confidence 998777777777789999999999984 567888999999999998778888888877777777776654331
Q ss_pred hhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC
Q 000124 323 GQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH 402 (2138)
Q Consensus 323 ~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~ 402 (2138)
T Consensus 333 -------------------------------------------------------------------------------- 332 (780)
T 2z6g_A 333 -------------------------------------------------------------------------------- 332 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 403 DNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 403 ~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
+..+..++.+|.+++....++..+...++++.|+.++...+..++..++.+|.+++..... .....+.++.|+++
T Consensus 333 --~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 333 --EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQL 407 (780)
T ss_dssp --HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHH
Confidence 1133344455555555555666677788899999999999999999999999999976432 12345789999999
Q ss_pred hcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-C-HHHHHHHHHHHHHHhcCChh---HHHHHHHc
Q 000124 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-S-QKAREVAAHVLWILCCHSED---IRACVESA 557 (2138)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d-~~vre~Aa~aL~nLs~~sd~---~r~~I~e~ 557 (2138)
+++.++.++..|+++|++|+..+++++..+.+.|+++.|+++|.+. + ..++..|+++|+||+..... .+..+.+.
T Consensus 408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~ 487 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence 9999999999999999999997778899999999999999999863 3 59999999999999874433 45677889
Q ss_pred CCcchhhhccccCCh-hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 558 GAVPAFLWLLKSGGP-KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~-evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
++++.|+.++.+++. .++..++++|+|++..++ . +..+.+.
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------------------------------------~-~~~i~~~ 529 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-------------------------------------N-HAPLREQ 529 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-------------------------------------H-HHHHHHT
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-------------------------------------H-HHHHHHC
Confidence 999999999998775 999999999999974311 0 1123456
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHH--HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCccc
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALan--L~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
|+++.|+.++++++.++|..+++++.| +.. | ...+.++..++.+|++|+. ..
T Consensus 530 g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~------------~----------~~~~~v~~~a~~aL~~La~--~~-- 583 (780)
T 2z6g_A 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------------G----------VRMEEIVEACTGALHILAR--DI-- 583 (780)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC------CCST------------T----------CCHHHHHHHHHHHHHHHTT--SH--
T ss_pred CCHHHHHHHHHhcchhHHHHHhhccccchhhc------------c----------cChHHHHHHHHHHHHHHhc--Ch--
Confidence 789999999998888889888887766 111 1 1235688899999999986 33
Q ss_pred chhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.++..+.+.|++++|+.+|.+++++++..|+.+|++|+.+++.+..+.+.|+++.|++++.+.++.+|+.|+++|.+++.
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 000124 795 HFP 797 (2138)
Q Consensus 795 ~~~ 797 (2138)
+.+
T Consensus 664 ~~~ 666 (780)
T 2z6g_A 664 DKP 666 (780)
T ss_dssp TSC
T ss_pred CCh
Confidence 764
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=387.17 Aligned_cols=564 Identities=19% Similarity=0.180 Sum_probs=440.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHH
Q 000124 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRL 119 (2138)
Q Consensus 40 ~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~ 119 (2138)
.+..+++.|...+ ...+..+++.+... .+..+. .|++|.|+.+|+++++.+|.+|+.+|.+|+.+.+++.
T Consensus 116 ~i~~lv~~L~~~~--~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 116 AHPTNVQRLAEPS--QMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ----------CCS--CHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cHHHHHHHhcCcc--HHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3567777776543 23455555555432 222343 4899999999999999999999999999999888888
Q ss_pred HHHhc-CChHHHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000124 120 KVLLG-GCIPPLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2138)
Q Consensus 120 ~v~~~-G~Ip~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~a 197 (2138)
.+... |+++.|+++|.++ +++++..|+.+|.+|+. +..++..+.+.|+++.|+++|.+++ +.++..|+++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-----~~~~~~~i~~~g~I~~Lv~lL~~~~---~~v~~~A~~a 257 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-----HREGLLAIFKSGGIPALVNMLGSPV---DSVLFHAITT 257 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHH
Confidence 77755 8999999999874 99999999999999996 4566889999999999999998754 6799999999
Q ss_pred HHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHH
Q 000124 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2138)
Q Consensus 198 L~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~ 277 (2138)
|.|||...+.....+.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++.|+.++..+.....+.
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 337 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 99999988777788889999999999999999999999999999999777777778888899999999998666666777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc
Q 000124 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2138)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s 357 (2138)
.+..+|.+++. +...+..+.+.|+++.|+.++.+++.. ++..+..+|.+++...
T Consensus 338 ~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~---------~~~~a~~~L~~L~~~~---------------- 391 (780)
T 2z6g_A 338 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---------LVQNCLWTLRNLSDAA---------------- 391 (780)
T ss_dssp HHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHH---------HHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchH---------HHHHHHHHHHHHhccc----------------
Confidence 88999999998 578888999999999999988775533 4555666666654200
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHH
Q 000124 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2138)
Q Consensus 358 s~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~L 437 (2138)
... ....++++.|
T Consensus 392 -----------------------~~~--------------------------------------------~~~~~~i~~L 404 (780)
T 2z6g_A 392 -----------------------TKQ--------------------------------------------EGMEGLLGTL 404 (780)
T ss_dssp -----------------------TTC--------------------------------------------SCCHHHHHHH
T ss_pred -----------------------hhh--------------------------------------------hhhhhHHHHH
Confidence 000 0012345667
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC-c-hhhHHHHHHHHHHHhhcCch---hHHHH
Q 000124 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-S-EQHQEYAVQLIAILTEQVDD---SKWAI 512 (2138)
Q Consensus 438 V~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~-d-~~Vr~~Aa~aL~nLa~~s~e---~r~~I 512 (2138)
+.++.+.+..++..++.+|.+++.+++..+..+.+.|+++.|++++... + +.++..|+++|+||+..+.+ .+..+
T Consensus 405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 7777777788899999999999988778888888999999999999753 3 48999999999999875444 35678
Q ss_pred HhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 513 TAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
...|+++.|+++|.+++ +.+++.++++|+||+. .+..+..+.+.|+++.|+++++++++++++.++|++.|-.
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----- 558 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----- 558 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C-----
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch-----
Confidence 88999999999999886 5999999999999997 4555677888999999999998877777777777654400
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
+ ..| ...+++++.++.+|.+|+. ++++
T Consensus 559 -----------------------------------------~-~~~----------~~~~~v~~~a~~aL~~La~-~~~~ 585 (780)
T 2z6g_A 559 -----------------------------------------F-VEG----------VRMEEIVEACTGALHILAR-DIHN 585 (780)
T ss_dssp -----------------------------------------C-STT----------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred -----------------------------------------h-hcc----------cChHHHHHHHHHHHHHHhc-Chhh
Confidence 0 000 0235678899999999997 7888
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
+..+.+.|++++|+.+|.++++.++..|+.+|.+++. .. ..+..+.+.|++++|++++++.+.+++..|+.+|.++
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~--~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999985 22 6778899999999999999999999999999999999
Q ss_pred hCCch--HHHHHHhcCcHHHHHHHHhCCCHHH
Q 000124 752 LSDPD--IAAEVLLEDVVSALTRVLAEGTSEG 781 (2138)
Q Consensus 752 a~~~e--~r~~Ii~~g~L~~LV~LL~~~~~~V 781 (2138)
+.+.+ .+.. .+++.+..++.+++...
T Consensus 662 ~~~~~~~~~~~----l~~~ll~~l~~~~~~~w 689 (780)
T 2z6g_A 662 SEDKPQDYKKR----LSVELTSSLFRTEPMTW 689 (780)
T ss_dssp HTTSCTTHHHH----HHHHHHHHC--------
T ss_pred HcCChHhhhcc----ccHHHHHHHHhCCCccc
Confidence 98654 2222 15566667776655433
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=376.58 Aligned_cols=528 Identities=20% Similarity=0.203 Sum_probs=432.8
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.|+++.|+.+|+++++.++..|+.+|.+++.+.+++..+... |+++.|++.|.+ ++++++..|+.+|.+|+. +
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-----~ 87 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 87 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-----S
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----C
Confidence 689999999999999999999999999999988888777765 889999999987 499999999999999996 4
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
..++..+.+.|+++.|++++.+++ +.++..|+++|.|++...+.....+.+.|+++.|+.+|.++++.++..++.+|
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 558999999999999999998754 67899999999999998877778889999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.+++..+++.+..+.+.|+++.|+.++........+..+..+|.+++. ++..|..+.+.|+++.|+.++.+++..
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~---- 239 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHH----
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHH----
Confidence 999976777778888999999999999866667788899999999998 588899999999999999988776533
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
++..+..+|.+++.. .. ...
T Consensus 240 -----~~~~a~~~L~nL~~~--------------------------------------~~-~~~---------------- 259 (644)
T 2z6h_A 240 -----LVQNCLWTLRNLSDA--------------------------------------AT-KQE---------------- 259 (644)
T ss_dssp -----HHHHHHHHHHHHGGG--------------------------------------CT-TCC----------------
T ss_pred -----HHHHHHHHHHHHhhc--------------------------------------ch-hhh----------------
Confidence 566677777666520 00 000
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 401 s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
...++++.|+.++.+.+.+++..++.+|.+++.+++..+..+.+.|+++.|+
T Consensus 260 ----------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 260 ----------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp ----------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred ----------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 0113456677777777788888999999999988778888888999999999
Q ss_pred HHhcCC--chhhHHHHHHHHHHHhhcCc---hhHHHHHhcCCchHHHHHhhhCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 481 SLLGLS--SEQHQEYAVQLIAILTEQVD---DSKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 481 ~LL~s~--d~~Vr~~Aa~aL~nLa~~s~---e~r~~I~~aGaIp~LV~LLks~d-~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
+++.+. .+.++..++++|+||+..++ ..+..+...|+++.|+++|++.+ +.+++.++++|+||+.+ +..+..+
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i 390 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 390 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHH
Confidence 999763 37899999999999987544 24556778899999999999874 79999999999999985 4455777
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
.+.|+++.|++++.++++++|+.++|++.|-. +.
T Consensus 391 ~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~----------------------------------------------~~ 424 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------------------------------------------FV 424 (644)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC--------------------------------------------------------C
T ss_pred HHcCCHHHHHHHHhccchhhhhHhhhccccch----------------------------------------------hc
Confidence 88999999999998888888888887665410 00
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCccc
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
.| ..++++++.++.+|++|+. ++.++..+.+.|++++|+.+|.++++.++..|+.+|.+++. ..
T Consensus 425 -~~----------~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~-- 488 (644)
T 2z6h_A 425 -EG----------VRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 488 (644)
T ss_dssp -CS----------SCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SH--
T ss_pred -cc----------ccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CH--
Confidence 00 0245678889999999998 67888999999999999999999999999999999999986 22
Q ss_pred chhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHH--HHHHhcCcHHHHHHHHhCCC
Q 000124 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIA--AEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r--~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
..+..+.+.|+++.|.+++++++++++..|+.+|.+++.+.... ..+ ++..+..++.+++
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH----HHHHHHHHSCCSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc----chHHHHHHHhCCC
Confidence 57778899999999999999999999999999999998865421 111 3555556665554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=372.10 Aligned_cols=510 Identities=18% Similarity=0.190 Sum_probs=421.6
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 122 ~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
...|+++.|+++|.++++.+|..|+.+|.+|+.. ..++..++.. |+++.|++.|.++. ++.++..++.+|.+
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-----~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----EASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 83 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----TTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-----ChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999963 3356666654 89999999998643 45689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
|+..++ ....+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 84 Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 161 (644)
T ss_dssp HTTSHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HhcChh-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHHHH
Confidence 998766 55788889999999999999999999999999999997766666777889999999999985 4567888888
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
.+|.+++..+++.+..+.+.|+++.|++++.+.+.
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--------------------------------------------- 196 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--------------------------------------------- 196 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---------------------------------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---------------------------------------------
Confidence 89999998778899889888888888887755321
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~L 440 (2138)
+..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 197 --------------------------------------------~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 197 --------------------------------------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 113445555666666666667777788899999999
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchH
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~ 520 (2138)
+...+..++..++.+|.+++...+. .....++++.|++++++.++.++..++++|++|+..+++++..+.+.|+++.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 9999999999999999999986432 1233588999999999999999999999999999977788999999999999
Q ss_pred HHHHhhhC-C-HHHHHHHHHHHHHHhcCCh---hHHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000124 521 LVQLLEAG-S-QKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 521 LV~LLks~-d-~~vre~Aa~aL~nLs~~sd---~~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
|+++|.+. + +.++..++++|+||+.+.. ..+..+.+.|+++.|++++++++ +.++..++++|+|++.+++
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 99999874 3 8999999999999987433 35666778999999999999875 6899999999999974321
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH--HhhcChhhh
Q 000124 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDIC 672 (2138)
Q Consensus 595 ~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan--L~s~~~e~r 672 (2138)
.+ ..+.+.|+++.|+.++++++.++|..|++++.| +..
T Consensus 386 -------------~~---------------------~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~------ 425 (644)
T 2z6h_A 386 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------ 425 (644)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHTTC----------CC------
T ss_pred -------------HH---------------------HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc------
Confidence 00 123456789999999998899999999998776 221
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
|+ .++.++..++.+|++|+. .. .++..+.+.|++++|+++|.+.+++++..|+.+|++++
T Consensus 426 ------~~----------~~~~v~~~a~~aL~~La~--~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 426 ------GV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp ------SS----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ------cc----------cHHHHHHHHHHHHHHHhc--CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11 245688899999999987 33 67778889999999999999999999999999999999
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 753 ~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.+++.+..+.+.|+++.|+.++.++++++|..|+++|.+++.+.
T Consensus 486 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999865
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=334.41 Aligned_cols=414 Identities=16% Similarity=0.166 Sum_probs=344.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++-++..+.+++.+.|..|+..++.+.+. .......+++.|+||.|+++|+ ++++.+|..|+++|+||+.++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 377889999999999999999999986543 2233467789999999999997 45688999999999999998889999
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-----hHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-----evq~~Aa~AL~nL 585 (2138)
.+++.|++|.|+++|+++++++++.|+++|+||+.+++..|..+.+.|+++.|+.++.+.+. ..++.++++|.|+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999987553 4677888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
+.... ..... ....++++.|+.++++++++++..|+++|.+|+
T Consensus 218 ~~~~~-------------~~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKN-------------PAPPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCS-------------SCCCH------------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhccc-------------chhHH------------------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 74321 00000 011346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
....+....+.+.|+++.|+.+|++++..++..|+++|+|++... +..+..+.+.|++++|+.+|.+++.+++..|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC---HHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 977788888899999999999999999999999999999998632 36777889999999999999999999999999
Q ss_pred HHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC
Q 000124 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 746 ~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~ 824 (2138)
++|+|++. +++.+..+.+.|+++.|+.++.+++.++|+.|+++|+|++.... ......+...|++++|+++|++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~--~~~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhcCCC-
Confidence 99999987 56667788899999999999999999999999999999998642 334445667899999999997654
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhcc
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~ 891 (2138)
......++++|.++....+..... .......+..+.++.|..+..++++.++.+|..+|.+++..
T Consensus 415 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 415 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHHHHHHHHhHhccch-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 456889999999886421111100 01111223456799999999999999999999999999874
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=329.16 Aligned_cols=414 Identities=16% Similarity=0.161 Sum_probs=344.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhh-ccchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~-~s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++.++..+.+.+.+.|..++..++.+.. ........+++.|+||.|+++|. +.++.++..|+++|+|++.++.+.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46778899999999999999999988644 33334567789999999999996 55688999999999999998888889
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-----hHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-----evq~~Aa~AL~nL 585 (2138)
.+++.|++|.|+.+|.++++++++.|+++|+||+.+++..+..+.+.|++++|+.++.+.+. ..++.++++|.++
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999986543 4677888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
+..... .... ....|+++.|+.++++++++++..|+++|.+++
T Consensus 237 ~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 237 CRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HCCCTT-------------CCCH------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred Hhcccc-------------hhhH------------------------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 743210 0000 012346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
....+....+.+.|+++.|+.+|.+.++.++..|+++|+|++.+. +..+..+.+.|++++|+.+|.+++.+++.+|+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc---hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 977888888999999999999999999999999999999998632 36777899999999999999999999999999
Q ss_pred HHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC
Q 000124 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 746 ~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~ 824 (2138)
++|+|++. ++..+..+.+.|++|.|+.++.+++.++|..|+|+|+|++.... ......+...|++++|+++|++.+
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~~~~~~l~~~g~i~~L~~LL~~~d- 433 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 433 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCcCHHHHHHHhcCCC-
Confidence 99999987 56667788899999999999999999999999999999998642 334445667899999999997654
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhcc
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~ 891 (2138)
......++.+|.++....+..... .......+..+.++.|..++.++++.++.+|..+|.+++..
T Consensus 434 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHhHhccCh-HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 456889999999886421110000 11111223456799999999999999999999999999874
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=323.50 Aligned_cols=397 Identities=14% Similarity=0.151 Sum_probs=344.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCch--hHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIF--LSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~--~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+-++..+.+.+.+ .|..++.++..+..... --..+.+.|+++.|+.+|.. +++++|..|+++|.+++.++++....
T Consensus 60 ~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5677778888775 89999999988854332 23567788999999999975 45889999999999999988899999
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs 544 (2138)
+++.|+||.|+++|++++..+|+.|+++|+||+.++++.|..+.+.|++++|+.+|.+. ....++.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997788999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
.+.+.........++++.|+.++++++++++..++++|.+|+... +.++++.|++++.+.+..++..+++++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 866555555555788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++.. .+.....+.+.|+++.|+.+++++++++|+.|+++|.||+.++++.+..+.+.|+++.|+.++++++..+|
T Consensus 299 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 299 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHhhcC---CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------CchHHHHHHhcCcHHH
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-------~~e~r~~Ii~~g~L~~ 769 (2138)
..|+++|.|++..... .++..+.+.|++++|+++|++.+++++..++.+|.|+.. ....+..+.+.|++..
T Consensus 376 ~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence 9999999999873333 567778999999999999999999999999999999853 2234566888999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
|..+..+.+++++++|..+|.+....
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999877653
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-29 Score=318.72 Aligned_cols=396 Identities=14% Similarity=0.150 Sum_probs=344.1
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCc--hhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+-++..+.+.+.+ .+..++..+..+.+.. .....+.+.|+++.|+.++.. .++++|..|+++|.+++.+++.....
T Consensus 79 ~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777765 8889999998875433 234567888999999999975 45889999999999999988888889
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs 544 (2138)
+++.|++|.|+.++.+++..+++.|+++|+||+.++++.|..+.+.|++++|+.+|... ....++.++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
.+.+.........++++.|+.++.+++++++..++++|.+++... +.++++.|+++|.+.+..++..++.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 876655555555788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++.. .+.....+.+.|+++.|+.++++++++++..|+++|.||+.++++.+..+.+.|+++.|+.++.+++..++
T Consensus 318 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 318 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 998642 33344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------CchHHHHHHhcCcHHH
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-------~~e~r~~Ii~~g~L~~ 769 (2138)
..|++||.|++.+... .+...+.+.|++++|+++|++.+++++..++.+|.|+.. .+..+..+.+.|++..
T Consensus 395 ~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 9999999999873322 566778999999999999999999999999999999853 2234567889999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
|..+..+.+.+++++|..+|.+.-.
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=311.51 Aligned_cols=403 Identities=15% Similarity=0.125 Sum_probs=349.0
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccc-hhhHHhhhchhHHHHHHHhcCCc-hhhHHHHHHHHHHHhhcCchhH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~-~~~~~I~e~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
..++.++.++.+++++++..|+.+|.++..... .....+.+.|++|.|++++.+++ +.+|..|+++|++++..+++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458889999999999999999999999866543 55677888999999999999886 8999999999999999778899
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..+...|+++.|+.+|.++++.+++.|+++|++|+.+.+..+..+.+.|+++.|+.++ .+.++.+++.++++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888899999999999999999 677899999999999999976
Q ss_pred h-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHH
Q 000124 589 A-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2138)
Q Consensus 589 ~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~AL 661 (2138)
. ..+.++.|++++.+.++.++..++++|++++.. .+.....+.+.|+++.|+.+++++++.++..|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 2 146899999999999999999999999998643 222223456779999999999999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 662 anL~s~~~e~r~~Ive~GaV~~Lv~LL~dg-s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
.+|+.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++... . .....+.+.|++++|+.+|.+++.++
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~-~--~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN-K--DQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC-H--HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC-H--HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998888889999999999999999998 9999999999999999732 2 45667888999999999999999999
Q ss_pred HHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhhhh
Q 000124 741 AETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCRF 810 (2138)
Q Consensus 741 r~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~~g 810 (2138)
+.+|+++|+|++. +++.+..+.+.|++++|+.++.+.+++++..+.++|.+|+...+. ...+...+...+
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 467 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAE 467 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCC
Confidence 9999999999986 477888899999999999999999999999999999999875321 112445555678
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 811 VVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 811 av~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
++.++..+.... +...+..|...+..+...
T Consensus 468 ~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 468 GLEKIENLQSHD--NNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHGGGCS--SHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHCCC
Confidence 899999987644 344578888888777643
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=316.54 Aligned_cols=361 Identities=17% Similarity=0.207 Sum_probs=301.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc-Cchh
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDS 508 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~ 508 (2138)
..+.++.|+.+|.++++++|..|+.+|.+++..+.+++..|.+.|+||+|+++|++++..+|+.|+++|+||+.+ ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 456799999999999999999999999999998789999999999999999999999999999999999999985 5899
Q ss_pred HHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc------------------c
Q 000124 509 KWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------------------S 569 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk------------------S 569 (2138)
|..+.+.|++|+|+++|++ .+.++++.++++|+||+. .+.++..+.+ ++++.|++++. +
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999998 588999999999999998 5667777774 57999998761 2
Q ss_pred CChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhcch----H-HH
Q 000124 570 GGPKGQDASAMALTKLIRAAD---------SATINQLLALLLG------DSPSSKAHVIKVLGHVLTMALQE----D-LV 629 (2138)
Q Consensus 570 ~~~evq~~Aa~AL~nLs~~~e---------~~aI~~Li~LL~~------~d~~V~~~A~~AL~~La~~~~~~----d-~v 629 (2138)
.++.++++|+++|.||+.+.+ .+.++.|+.+++. .+....+.+..+|++|+...... + ..
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357999999999999986531 4567899999874 34567788899999887432110 0 00
Q ss_pred -----------------HhhhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcC----hhhhhhhhhCCCHHHHHHH
Q 000124 630 -----------------QKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMR----QDICGSLATDEIVNPCMRL 687 (2138)
Q Consensus 630 -----------------~~~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~----~e~r~~Ive~GaV~~Lv~L 687 (2138)
...+...++++.|+.+++ +.++++++.|+++|.||+.++ ...+..+.+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 011233455677888996 458999999999999998754 2334455667999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC--------CHHHHHHHHHHHHHhhC-CchHH
Q 000124 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--------SIDAAETAVAALANLLS-DPDIA 758 (2138)
Q Consensus 688 L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~--------s~~Vr~eAl~ALaNLa~-~~e~r 758 (2138)
|.++++.+++.|+++|.||+.. . .++..| ..|+++.|+.+|.++ +.+++..|+.+|.||.. +++.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~--~--~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVD--A--RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTT--C--SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCC--h--hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999973 2 455444 789999999999875 47888999999999965 78899
Q ss_pred HHHHhcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcCC
Q 000124 759 AEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 759 ~~Ii~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+.+.|++++|+.++.++ .+.+++.|+++|++|+.+.+
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999986 89999999999999998743
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=306.11 Aligned_cols=397 Identities=17% Similarity=0.202 Sum_probs=346.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCc--hhHHHHhhhchHHHHHHHHccCC-HHHHHHHHHHHHHhhhccchhhH
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--~~~~~L~e~~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
.+.|+..+.+.+.+ ++..++.+|.++.... .....+...++++.|+.++.+.+ +.++..|+.+|.+++.++++.+.
T Consensus 76 l~~lv~~L~s~~~~-~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDNN-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 37788888877654 8999999999995443 45566788899999999999877 99999999999999998788888
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHS 547 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~s 547 (2138)
.+.+.|+++.|+.++.++++.++..|+++|++|+..++..+..+...|++++|+.+| .+.++.++..++++|.+|+.+.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987778889999999999999999 5679999999999999999864
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
...+ .....++++.|+.++.++++.++..++++|++++... +.+.++.|+++|.+.++.++..++++|+++
T Consensus 235 ~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 235 PQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 3322 2345899999999999999999999999999998653 246899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+.. .+.....+.+.|+++.|+.+++++ ++.++..|+++|.||+.++++....+.+.|+++.|+.+|.++++.++..
T Consensus 314 ~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 314 VTG---DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp TTS---CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HcC---CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 752 222334456789999999999999 9999999999999999878888889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCc------------hHHHHHHhcCc
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP------------DIAAEVLLEDV 766 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~------------e~r~~Ii~~g~ 766 (2138)
|+++|+|++..... ..+..+.+.|++++|+.+|.+.+++++..++.+|.++.... ..+..+.+.|+
T Consensus 391 a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 391 AAWAISNATSGGSH--DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 99999999873222 56777889999999999999999999999999999997532 24667889999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..|..+..+.++++++.|.+++.++...
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=308.95 Aligned_cols=358 Identities=15% Similarity=0.177 Sum_probs=299.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
.++.++.++.++++++|..|+.+|.+++.+++..+..+.+.|++|.|+++|+++++.++..|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46789999999999999999999999998877778889999999999999999999999999999999999778999999
Q ss_pred HhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc--------ccC--------ChhHH
Q 000124 513 TAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--------KSG--------GPKGQ 575 (2138)
Q Consensus 513 ~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL--------kS~--------~~evq 575 (2138)
.+.|++|+|+++|. ++++++++.++++|+||+.+ +..+..+.+ |+++.|+.++ +++ ++.++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999987 678888888 9999999999 332 45677
Q ss_pred HHHHHHHHHHHHhh-------ch-hhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhc----chH----------
Q 000124 576 DASAMALTKLIRAA-------DS-ATINQLLALLLG------DSPSSKAHVIKVLGHVLTMAL----QED---------- 627 (2138)
Q Consensus 576 ~~Aa~AL~nLs~~~-------e~-~aI~~Li~LL~~------~d~~V~~~A~~AL~~La~~~~----~~d---------- 627 (2138)
+.|+++|+||+.++ +. ++++.|+.++.. .+..+.+.+..+|++++.... ...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999763 23 889999999985 345667777777887752100 000
Q ss_pred ---------------------------------HHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChh---
Q 000124 628 ---------------------------------LVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQD--- 670 (2138)
Q Consensus 628 ---------------------------------~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e--- 670 (2138)
.....+...|+++.|+.+++++ ++++++.|+++|.||+.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0011244677889999999765 799999999999999986543
Q ss_pred -h-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC------HHHHH
Q 000124 671 -I-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------IDAAE 742 (2138)
Q Consensus 671 -~-r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s------~~Vr~ 742 (2138)
. +..+.+.|+++.|+++|.++++.++..|+++|.|++. .. ..+. ++..|++++|+++|..++ .++..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--CH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 2234468999999999999999999999999999987 22 4444 445689999999999864 46888
Q ss_pred HHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCC
Q 000124 743 TAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 743 eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
.++.+|.|+.. +++.+..+.+.|++++|++++.++ +++++++|+++|.++..+.+
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999975 777888899999999999999999 99999999999999998754
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=304.36 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=347.0
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc-chhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchh
Q 000124 431 AEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 431 ~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s-~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+.++.++..+.+++++++..|+..|.++.... ......+.+.|++|.|++++.++ ++.+|..|+++|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 356889999999999999999999999986542 34455677889999999999987 8999999999999999977788
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+..+...|+++.|+.+|.++++.+++.|+++|++|+.+.+..+..+...|+++.|+.++.+.++.++..++++|++|+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999998888888889999999999999999999999999999999965
Q ss_pred h--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHH
Q 000124 589 A--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2138)
Q Consensus 589 ~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~A 660 (2138)
. ..+.++.|+.++.++++.++..++++|++++... ++. ...+.+.|+++.|+.+++++++.++..|+++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 3 1468999999999999999999999999987432 222 2334567899999999999999999999999
Q ss_pred HHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 661 LanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
|.+|+.+++.....+.+.|+++.|+.+|.++++.++..|+++|++++...+ .....+.+.|+++.|+.+|.+++.++
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---EQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998788888888999999999999999999999999999999986332 45556778999999999999999999
Q ss_pred HHHHHHHHHHhhC--Cc--hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhh
Q 000124 741 AETAVAALANLLS--DP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQC 808 (2138)
Q Consensus 741 r~eAl~ALaNLa~--~~--e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~ 808 (2138)
+..|+++|+|++. .+ +....+.+.|+++.|+.++.+.++.++..|.++|.+++...+. ...+...+..
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 9999999999976 34 6777888999999999999999999999999999999875321 1223444556
Q ss_pred hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 809 ~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
.|++.+|..++.+.+ ...+..|..++..+-..
T Consensus 480 ~g~~~~L~~L~~~~~--~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 480 AGGMEKIFNCQQNEN--DKIYEKAYKIIETYFGE 511 (530)
T ss_dssp TTHHHHHHGGGGCSC--HHHHHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHCCc
Confidence 788999999886543 44578888888877653
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=305.27 Aligned_cols=362 Identities=18% Similarity=0.154 Sum_probs=297.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC------------CHHHHHHHHHHHHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA------------TADVREYLILSLTKLC 460 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss------------s~evq~~Aa~aL~~Ls 460 (2138)
+.|+..+.+.+.+ ...+.|..+..+++.+..+.+.|+++.|+.++... ++++|.+|+++|.+++
T Consensus 35 ~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 35 YSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ----------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 4455555555543 36778888989998888999999999999999863 3699999999999999
Q ss_pred hccchhhHHhhhchhH----------HHHHHHhcCCc--hh-----hHH-------HHHHHHHHHhhcCchhHHHHHhcC
Q 000124 461 RREVGIWEAIGKREGI----------QLLISLLGLSS--EQ-----HQE-------YAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggI----------p~LV~LL~s~d--~~-----Vr~-------~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
.++++......+.+.+ +.+++++.+.. .+ +++ .|+++|.|++. ++++|..+.+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G 189 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELG 189 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Confidence 9888877776666666 55667676542 12 333 89999999987 589999999999
Q ss_pred CchHHHHHhhh-----------CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHH
Q 000124 517 GIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2138)
Q Consensus 517 aIp~LV~LLks-----------~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~n 584 (2138)
++++|+.+|.. .++.+++.|+++|.||+.+++..+..+.. .|+||.|+.+++++++++++.++++|.|
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999953 24778999999999999988778877754 5669999999999999999999999999
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh-hcCCCHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV-LNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L-Lks~s~evre~Aa~ALan 663 (2138)
|+...+ + ..+..+.+.|+++.|+.+ ++++++++++.|+.+|+|
T Consensus 270 Ls~~~~---------------~---------------------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 270 LSWRAD---------------V---------------------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HTSSCC---------------H---------------------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HhcCCC---------------H---------------------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 974210 1 112335578999999997 566789999999999999
Q ss_pred HhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhcCC--CCcccchhhhHHhcCChhhHHhhhhcC
Q 000124 664 LFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALSRP--TKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2138)
Q Consensus 664 L~s~~~e~r~~Iv-e~GaV~~Lv~LL~dgs~----~Vk~~AA~ALanLa~s--~~~~d~~r~~I~~~G~V~~Lv~LL~s~ 736 (2138)
|+..+++++..+. ..|++++|+++|+++++ .++..|+++|.||+.. .. +.++..+.+.|++++|+.+|.++
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--EDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHSSCS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHcccHHHHHHHHcCC
Confidence 9986677788887 78999999999988765 4899999999999841 22 26888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-CCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 000124 737 SIDAAETAVAALANLL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa-~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+++++|+++|+||+ .+++.+..+.+.|++++|+.++..+++++++.|+++|.||+.+.|
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999 478999999999999999999999999999999999999998764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=295.07 Aligned_cols=400 Identities=14% Similarity=0.100 Sum_probs=339.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhh--ccchhhHHhhhc-hhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchh
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCR--REVGIWEAIGKR-EGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~--~s~~~~~~I~e~-ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.++.++..+.++++.++..|+..|..+.. .++... .+.+. |+++.|+++++++ ++.+|..|+++|++++..+.+.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~-~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID-EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH-HHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36778889999999999999999998754 333333 44556 9999999999988 8999999999999999876777
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CChhHHHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~evq~~Aa~AL~nLs~ 587 (2138)
+..+.+.|+++.|+++|+++++.+|+.|+++|++++.+.+..+..+.+.|+++.|+.++++ .++.++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999888888888899999999999995 789999999999999996
Q ss_pred hh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHH
Q 000124 588 AA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659 (2138)
Q Consensus 588 ~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ 659 (2138)
.. ..+.++.|++++.++++.++..++++|++++... ++ ....+...|+++.|+.++++++++++..|++
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--ND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 53 1468999999999999999999999999986432 12 2233456789999999999999999999999
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHH
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~ 739 (2138)
+|.+++..+++....+.+.|+++.|+.+++++++.++..|+++|++++.+.+ .....+.+.|+++.|+.++.+++++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR---AQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999999777778888899999999999999999999999999999986322 4555677889999999999999999
Q ss_pred HHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--------chhhhhhhhhh
Q 000124 740 AAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCR 809 (2138)
Q Consensus 740 Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--------~d~i~~~i~~~ 809 (2138)
++.+|+++|+|++. +++....+.+.|+++.|+.++.+++++++..|+++|.+++...+. .+.+...+...
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 99999999999986 567777788899999999999999999999999999999875321 01233445557
Q ss_pred hhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 810 gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
|++++|..++.+.+ ...+..|+.++.++-.
T Consensus 414 g~~~~l~~l~~~~~--~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 414 YGLDKIEFLQSHEN--QEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HCHHHHHHHHCHHH--HHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHCC
Confidence 78888888876543 3558888888887764
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=305.25 Aligned_cols=374 Identities=13% Similarity=0.133 Sum_probs=317.1
Q ss_pred cccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc-CchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc
Q 000124 384 EPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR 462 (2138)
Q Consensus 384 ~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~-n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~ 462 (2138)
..|....+ +.|+.+|.+.+.+ +|..++.+|.+++. +.+++..+.+.++++.|+.+|.+++.++|..|+.+|.+++.+
T Consensus 43 ~~~~~~~i-~~LV~~L~s~~~~-~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 43 PNWRQPEL-PEVIAMLGFRLDA-VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCCCH-HHHHHHTTCSCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred CCcccccH-HHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34444444 8899999988764 89999999999974 778889999999999999999999999999999999999985
Q ss_pred -cchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh--------------
Q 000124 463 -EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-------------- 526 (2138)
Q Consensus 463 -s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-------------- 526 (2138)
+++++..|.+.|||+.|+++|++ .+..+++.++.+|+||+. +++++..+.+ +++|+|++++.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC-------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccc
Confidence 57899999999999999999997 577899999999999998 6788998885 57999999872
Q ss_pred ----hCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-CCcchhhhcccc------CChhHHHHHHHHHHHHHHhhc-----
Q 000124 527 ----AGSQKAREVAAHVLWILCCHSEDIRACVESA-GAVPAFLWLLKS------GGPKGQDASAMALTKLIRAAD----- 590 (2138)
Q Consensus 527 ----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~-GaI~aLv~LLkS------~~~evq~~Aa~AL~nLs~~~e----- 590 (2138)
..+.++++.|+++|+||+.++++.|..+.+. |.++.|+.++++ .+...++.|+++|.||+...+
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 1257999999999999999888878877775 556799998875 456789999999999986511
Q ss_pred ----------------------------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhh-cchHHHHhhhcccchhh
Q 000124 591 ----------------------------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 591 ----------------------------~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~-~~~d~v~~~l~~~GaI~ 640 (2138)
.++++.|+.+|+ ..++.+++.++++|.+|+... ......+..+.+.++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 135678899996 567889999999999997532 12233455567789999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhcCCCCc
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--------TQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--------s~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.|+.++.++++++++.|+++|.||+. ++.++..+ ..|+++.|+.+|.++ ++.+...|+++|+||....
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-- 434 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-- 434 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC--
Confidence 99999999999999999999999998 56666655 779999999999886 4678999999999998643
Q ss_pred ccchhhhHHhcCChhhHHhhhhcC--CHHHHHHHHHHHHHhhCCchHHHHHHhcCc
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTS--SIDAAETAVAALANLLSDPDIAAEVLLEDV 766 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~--s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~ 766 (2138)
+.++..+.+.|+|++|+.++.++ ++.+++.|+.+|+||..+.+.|..+.++|.
T Consensus 435 -~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 435 -LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp -HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred -HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 26888899999999999999986 899999999999999999999999988664
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=302.98 Aligned_cols=402 Identities=15% Similarity=0.145 Sum_probs=346.1
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHhhhchHHHHHHHHccC-CHHHHHHHHHHHHHhhhccchhh
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~e~~gI~~LV~LL~ss-s~evq~~Aa~aL~~Ls~~s~~~~ 467 (2138)
..+.|+..+.+.+.+ ++..++.+|.++... ......+.+.++++.|+.++.+. ++.++..|+.+|.+++..+++..
T Consensus 88 ~i~~lv~~L~s~~~~-~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCSSHH-HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347788888887654 899999999999654 23345677789999999999987 89999999999999999877788
Q ss_pred HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC
Q 000124 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2138)
Q Consensus 468 ~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s 547 (2138)
..+.+.|+++.|+++++++++.+|..|+++|++|+..++..+..+...|+++.|+.+|.+.++.++..++++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999999999877788888899999999999999999999999999999999765
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+.........++++.|+.++.++++.++..++++|.+++... +.++++.|+.++.+.++.++..++++|+++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 333334455899999999999999999999999999998652 247899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+... +.....+.+.|+++.|+.+++++++.++..|+++|.+|+.++++....+.+.|+++.|+.+|.++++.++..|
T Consensus 327 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 327 VTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp TTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HcCC---HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 6432 2223334567899999999999999999999999999998788888888999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch------------HHHHHHhcCcH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLEDVV 767 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e------------~r~~Ii~~g~L 767 (2138)
+++|++++......+.....+.+.|++++|+.++.+.++.++..|+.+|.++....+ .+..+.+.|++
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 999999986321101355567889999999999999999999999999999976322 35568889999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 768 SALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 768 ~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+.|..++.+.++.+++.|..+|.++....
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999988754
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=293.32 Aligned_cols=397 Identities=15% Similarity=0.153 Sum_probs=337.7
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhc---CchhHHHHhhh-chHHHHHHHHccC-CHHHHHHHHHHHHHhhhccchh
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHA-EAKKVLIGLITMA-TADVREYLILSLTKLCRREVGI 466 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~---n~~~~~~L~e~-~gI~~LV~LL~ss-s~evq~~Aa~aL~~Ls~~s~~~ 466 (2138)
.+.|+..+.+.+.+ +|..++.+|..+.. ++... .+.+. ++++.|+.++.++ ++.+|..++.+|.+++..+++.
T Consensus 22 l~~l~~~l~s~~~~-~r~~A~~~L~~l~~~~~~~~~~-~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPE-QQLSATQKFRKLLSKEPNPPID-EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHH-HHHHHHHHHHHHHHSSSSCCHH-HHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCCcHH-HHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36677777777654 89999999998743 33443 34555 8899999999988 8999999999999999976777
Q ss_pred hHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhc
Q 000124 467 WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCC 545 (2138)
Q Consensus 467 ~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~ 545 (2138)
...+.+.|+++.|+++++++++.+|+.|+++|++++..+++.+..+...|+++.|+.++++ .+..++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999777888889999999999999996 689999999999999997
Q ss_pred CC-hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 546 HS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 546 ~s-d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
+. ...+..+. .++++.|+.+++++++.++..++++|.+++... +.+.++.|++++.+.++.++..++++|
T Consensus 180 ~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 180 GKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp CSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 54 22222222 789999999999999999999999999998642 246899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++... +.....+.+.|+++.|+.+++++++.+|..|+++|.+++.++++....+.+.|+++.|+.+++++++.+|
T Consensus 259 ~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 259 GNIVTGD---DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHTTSC---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHhhCC---hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9986432 2223335567899999999999999999999999999998788888888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch------------HHHHHHhc
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLE 764 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e------------~r~~Ii~~ 764 (2138)
..|+++|++++..... .....+.+.|++++|+.++++++.+++..|+.+|.+++...+ ....+.+.
T Consensus 336 ~~a~~~L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 336 KEAAWAITNATSGGSA--EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 9999999999863222 455567788999999999999999999999999999986332 34567788
Q ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 765 DVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
|+++.|..++.+.+..+++.|..+|.++..+.
T Consensus 414 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 414 YGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999998889999999999999988653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=293.26 Aligned_cols=361 Identities=16% Similarity=0.179 Sum_probs=298.1
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
.+|.|+++|+++++.+|..|+++|.+|+.+++..+..+.+.|++|.|+++|+++++.+++.|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47899999999999999999999999998777788899999999999999999999999999999999999879999999
Q ss_pred HHcCCcchhhhccc-cCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhc--------CC--------CcchHHH
Q 000124 555 ESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD------SATINQLLALLL--------GD--------SPSSKAH 611 (2138)
Q Consensus 555 ~e~GaI~aLv~LLk-S~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~--------~~--------d~~V~~~ 611 (2138)
.+.|+++.|+++++ ++++++++.++++|+||+.+++ .++++.|++++. +. +.++...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 99999999999999 8899999999999999997632 278999999993 22 3345568
Q ss_pred HHHHHHHHHhhhcchHHHHhhhccc-chhhHHHHhhcC------CCHHHHHHHHHHHHHHhhc-----------------
Q 000124 612 VIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNS------SNEENQEYAASVLADLFSM----------------- 667 (2138)
Q Consensus 612 A~~AL~~La~~~~~~d~v~~~l~~~-GaI~aLV~LLks------~s~evre~Aa~ALanL~s~----------------- 667 (2138)
+.++|++|+.. ++ .+..+.+. |+++.|+.++++ .+..+++.++++|.||+..
T Consensus 163 a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 163 ATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 99999998753 33 34456676 999999999986 3567889999999998731
Q ss_pred ---------------------------------ChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCcc
Q 000124 668 ---------------------------------RQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 668 ---------------------------------~~e~r~~Ive~GaV~~Lv~LL~dg-s~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
+++..+.+.+.|+++.|+.+|++. ++.+++.|+++|.||+.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 122334556678899999999764 6899999999999999743220
Q ss_pred -cch-hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCC------HHHHHHH
Q 000124 714 -TTN-KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT------SEGKKNA 785 (2138)
Q Consensus 714 -d~~-r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~------~~Vr~~A 785 (2138)
... +..+.+.|++++|+++|.+++.+++.+|+++|.||+.+++.+..+. .+++++|+++|..++ +++...+
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 012 3344578999999999999999999999999999999988876665 579999999998874 4688899
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~ 844 (2138)
+++|.|+.... ......+...|++++|++++.++ .....+.+|...|.++...++
T Consensus 398 l~~l~ni~~~~---~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 398 CYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcchh
Confidence 99999998764 45666677789999999999876 234568899999988875543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=290.86 Aligned_cols=392 Identities=19% Similarity=0.171 Sum_probs=288.6
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-----------CHhHHHHHHHHHHH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----------DISVRASAADALEA 285 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s-----------d~~vr~~Aa~aL~n 285 (2138)
.++.|...+.+.+.. ...+.|..+. .+++.|..+.+.|++|.|+++|.... +...+..|+++|.|
T Consensus 33 ~~~~l~~~~~~~~~~---~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD---DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp ------------CCH---HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH---HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 356666677665544 3677788877 45566777899999999999998532 26899999999999
Q ss_pred HhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHH
Q 000124 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365 (2138)
Q Consensus 286 Ls~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L 365 (2138)
+....++..+...+.+.++.|=. +. .++...+ ++++++..
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~-~~----------------~~~~~~~---------------~~~~~~~~-------- 148 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQ-IR----------------AYCETCW---------------EWQEAHEP-------- 148 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHH-HH----------------HHHHHHH---------------HHHTTTSS--------
T ss_pred HHccCcchhHHHHHHHHHHHHHH-hh----------------hhhHHHH---------------HHHHhhcc--------
Confidence 99875555444443333322211 10 0000000 11111000
Q ss_pred HHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc--
Q 000124 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-- 443 (2138)
Q Consensus 366 ~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s-- 443 (2138)
..+........ ..+..+-.|+.+|++++.+++++..+.+.|+++.|+.++..
T Consensus 149 ------------~~~~~~~~~~~--------------~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~ 202 (458)
T 3nmz_A 149 ------------GMDQDKNPMPA--------------PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 202 (458)
T ss_dssp ------------SSCCCSCC--C--------------CCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ------------ccccccCCccc--------------hhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhh
Confidence 00000000000 00113347889999999899999999999999999999952
Q ss_pred ---------CCHHHHHHHHHHHHHhhhccchhhHHhhhchh-HHHHHHHhcCCchhhHHHHHHHHHHHhhc-CchhHHHH
Q 000124 444 ---------ATADVREYLILSLTKLCRREVGIWEAIGKREG-IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAI 512 (2138)
Q Consensus 444 ---------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg-Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~r~~I 512 (2138)
.+..++.+|+.+|.+++.+++.++..+...+| ||.|+++|+++++.+++.|+++|+||+.. ++++|..+
T Consensus 203 ~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I 282 (458)
T 3nmz_A 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282 (458)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 24678999999999999987667777765555 99999999999999999999999999984 46789999
Q ss_pred HhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHHHHH-HcCCcchhhhccccCCh----hHHHHHHHHHHHHH
Q 000124 513 TAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLI 586 (2138)
Q Consensus 513 ~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~-e~GaI~aLv~LLkS~~~----evq~~Aa~AL~nLs 586 (2138)
.+.|++|+|+++| .++++.+++.++.+|+||+.+.++++..+. ..|+++.|+.++.++++ ++++.++++|.|++
T Consensus 283 ~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs 362 (458)
T 3nmz_A 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362 (458)
T ss_dssp HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999975 556899999999999999986666666666 79999999999987665 48999999999997
Q ss_pred HhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 587 RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 587 ~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
..- ...+ ..+..+.+.|+++.|+.++++++.++++.|+++|+||+.
T Consensus 363 ~~~---------------------------------a~~~-~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 363 SLI---------------------------------ATNE-DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHH---------------------------------TTCH-HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred hcc---------------------------------cCCH-HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 410 0011 112335678899999999999999999999999999997
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+++.+..+.+.|++++|+.+|+++++.+++.|+++|.||+...+.
T Consensus 409 ~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 409 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 7899999999999999999999999999999999999999986554
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=279.69 Aligned_cols=488 Identities=12% Similarity=0.049 Sum_probs=341.1
Q ss_pred chhHHH-HhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 422 IFLSQW-VSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 422 ~~~~~~-L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
++.... +...+..+.+.+.+.+ .+..+...+...|...|.+ ...|..| ..++++.|.+++++ ..+|..|+.+|+
T Consensus 244 p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~ 319 (778)
T 3opb_A 244 TTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLV 319 (778)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 444444 3344556777777754 4455556666777777766 5556666 57888999999975 588999999999
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CChhHHHHH
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDAS 578 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~evq~~A 578 (2138)
+|..........+ ....+.+++.|.+++.+.+.+|+++|.+|+.+.+....+..+.+.++.|++++++ .+..+.+.+
T Consensus 320 KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Yga 397 (778)
T 3opb_A 320 KTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGL 397 (778)
T ss_dssp HHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHH
T ss_pred HHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHH
Confidence 9987433221111 1244556666777666669999999999999877777777777889999999995 778999999
Q ss_pred HHHHHHHHHhhch-----hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHH
Q 000124 579 AMALTKLIRAADS-----ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN 653 (2138)
Q Consensus 579 a~AL~nLs~~~e~-----~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~ev 653 (2138)
..+|.||++..+. ..+..|.++.+...++...... . +.......++.+..+.+.|+++.|+.+++++++.+
T Consensus 398 l~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~-~---~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~ 473 (778)
T 3opb_A 398 LVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA-E---KAAKEDILLFNEKYILRTELISFLKREMHNLSPNC 473 (778)
T ss_dssp HHHHHHTTCCCCCCCCCCC------------------CCT-H---HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHH
T ss_pred HHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc-c---ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 9999999986431 2333333333321121111000 0 00111122335566889999999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCCcccchhh-hHHhcCChhhH
Q 000124 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM---VATQSARALGALSRPTKTKTTNKM-SYIAEGDVKPL 729 (2138)
Q Consensus 654 re~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~---Vk~~AA~ALanLa~s~~~~d~~r~-~I~~~G~V~~L 729 (2138)
|+.|+++|.||+. ++++|..++++|++++|+.+|.++++. +|..|++||+++..+.++ .... .....|+|++|
T Consensus 474 re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np--~~~f~~~~~~~aI~pL 550 (778)
T 3opb_A 474 KQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP--GLIFKKYSALNAIPFL 550 (778)
T ss_dssp HHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH--HHHSSSSCSTTHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH--HHHcCCCccccchHHH
Confidence 9999999999987 799999999999999999999998765 899999999999863322 1110 00013899999
Q ss_pred Hhhhhc--CCH------------HHHHHHHHHHHHhhCCc-----hHHHHHHhc-CcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 730 IKLAKT--SSI------------DAAETAVAALANLLSDP-----DIAAEVLLE-DVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 730 v~LL~s--~s~------------~Vr~eAl~ALaNLa~~~-----e~r~~Ii~~-g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
+.||.. ... -.+.+|+.||+||+..+ +.|..|+.+ |+++.|+.+|.++++.+|++|++++
T Consensus 551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI 630 (778)
T 3opb_A 551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630 (778)
T ss_dssp HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999983 211 12668999999999976 468888885 9999999999999999999999999
Q ss_pred HHhhhcCCCc-hhhhhhh--hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcccccccCCCchHH
Q 000124 790 HQLLKHFPVG-DVLKGNA--QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 790 ~nL~~~~~~~-d~i~~~i--~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
+||+.+.... ..+.... ...+.++.||.+++. ++..++.+|..+|+++++ ....+..+. ...++++.
T Consensus 631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s--~D~~~r~AAagALAnLts~~~~ia~~ll-------~~~~gi~~ 701 (778)
T 3opb_A 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL--SDVESQRAVAAIFANIATTIPLIAKELL-------TKKELIEN 701 (778)
T ss_dssp HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCHHHHHHHT-------TCHHHHHH
T ss_pred HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCChHHHHHHH-------HccccHHH
Confidence 9999864211 1221111 112347889999965 445679999999999975 322223222 12357889
Q ss_pred HHHhhhc--CChHHHHHHHHHHHHhhc----cCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH
Q 000124 866 LVCCLAE--GPPPLQDKAIEILSRLCG----DQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2138)
Q Consensus 866 Lv~ll~~--~~~~vq~~AieiL~~L~~----~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2138)
++.++.+ +++.++++|+.++.|+.. +...-.......+.+++.+|.+.+-.++..+-.+.+...+.
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~~ 773 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVIL 773 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999998 889999999999999986 22212223335578889999987777777777776666553
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=260.85 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=236.3
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-----------CCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-----------~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
++...+..|+++|.|++. ++++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+++..+..+
T Consensus 44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344567789999999998 58999999999999999999953 247899999999999999887788877
Q ss_pred HH-cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 555 ES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 555 ~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
.. .|+||.|+++++++++++++.++++|.||+..++ + ..+..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~---------------~---------------------~~k~~i 166 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD---------------V---------------------NSKKTL 166 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC---------------H---------------------HHHHHH
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC---------------H---------------------HHHHHH
Confidence 54 5569999999999999999999999999974211 0 112234
Q ss_pred cccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhc
Q 000124 634 AANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALS 707 (2138)
Q Consensus 634 ~~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Iv-e~GaV~~Lv~LL~dgs~----~Vk~~AA~ALanLa 707 (2138)
.+.|+++.|+++ ++++++++++.|+.+|+||+..+++++..+. ..|+++.|+++|+++++ .+++.|+++|.||+
T Consensus 167 ~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 167 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 578899999997 5667899999999999999986677788887 78999999999998765 58999999999998
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa 786 (2138)
......+.++..+.+.|++++|+.+|.+++.+++++|+++|.||+. +++.+..+.+.|++|+|++++.++++++|+.|+
T Consensus 247 ~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 5100123688889999999999999999999999999999999995 788999999999999999999999999999999
Q ss_pred HHHHHhhhcCC
Q 000124 787 RALHQLLKHFP 797 (2138)
Q Consensus 787 ~AL~nL~~~~~ 797 (2138)
++|.||+.+.+
T Consensus 327 ~aL~nL~~~~~ 337 (354)
T 3nmw_A 327 AALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCH
Confidence 99999999765
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=255.56 Aligned_cols=272 Identities=19% Similarity=0.155 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhhccchhhHHhhhchh
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREG 475 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s-----------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg 475 (2138)
.+..++.+|++++.++++++.+.+.|+++.|+.++.. .++.+|.+|+.+|.+++.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999952 24678999999999999987778877765555
Q ss_pred -HHHHHHHhcCCchhhHHHHHHHHHHHhhc-CchhHHHHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 476 -IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 476 -Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~-s~e~r~~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
||.|+++|+++++.+++.|+++|+||+.. ++++|..+.+.|++|+|+++| +++++.+++.++.+|+||+.+.++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999984 467899999999999999975 567899999999999999987767776
Q ss_pred HHH-HcCCcchhhhccccCCh----hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000124 553 CVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 553 ~I~-e~GaI~aLv~LLkS~~~----evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d 627 (2138)
.+. ..|+++.|+++++++++ ++++.++++|.|++... ...+
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~---------------------------------a~~~- 253 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI---------------------------------ATNE- 253 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH---------------------------------TTCH-
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc---------------------------------cCCH-
Confidence 666 79999999999987765 48999999999997410 0011
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
..+..+.+.|+++.|+.++++++.++++.|+++|.||+..+++.+..+.+.|++++|+.+|+++++.+++.|+++|.||+
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 12334567899999999999999999999999999999778999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000124 708 RPTKT 712 (2138)
Q Consensus 708 ~s~~~ 712 (2138)
...+.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 85443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-19 Score=233.82 Aligned_cols=544 Identities=14% Similarity=0.124 Sum_probs=356.3
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhc--------cCCHHHHHHHHHHHHHHH
Q 000124 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS--------SDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 173 Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~--------s~s~evq~~A~~aL~nLs 244 (2138)
+..|++-+.... .++.++..++-++..+-...... +-+.+..++. ....+.-..+..+|..+.
T Consensus 170 ~~~l~~~~~~~~-~~~~~~~~~l~i~~~~~~~~~~~--------~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lf 240 (778)
T 3opb_A 170 VRFLVKELILRI-SEDEVKSMMLIIFAELQSSFQKD--------FDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELY 240 (778)
T ss_dssp TTHHHHHHHTTT-TCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHT
T ss_pred hhhHHHHhcccc-ChhhhHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHh
Confidence 556666555433 33456766666666554322211 1122222222 112233455666666665
Q ss_pred hhcCCCcch-hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000124 245 LAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2138)
Q Consensus 245 ~~~~e~r~~-l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~ 323 (2138)
-..++.+.. +...|+.+.+...+.+.++..+.......+...+. +...|..+ ..++++.|.+.+.+.
T Consensus 241 Pi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi-~~~cR~~I-~~~~~~~L~~~l~~~---------- 308 (778)
T 3opb_A 241 PSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI-DETMRTYI-TENYLQLLERSLNVE---------- 308 (778)
T ss_dssp TTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC-SHHHHHHH-HHHHHHHHHHHTTSG----------
T ss_pred cCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC-CcHHHHHH-HHhHHHHHHHHhccH----------
Confidence 434444343 45778899998888655565555555555544455 57777777 567778888887542
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000124 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2138)
Q Consensus 324 ~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~ 403 (2138)
.++..|..+|+++...-. .. ........+.++..+...+
T Consensus 309 -~ir~lAavvL~KL~~~~~--------------------------------------~~--~~si~~La~~~~~~L~~~~ 347 (778)
T 3opb_A 309 -DVQIYSALVLVKTWSFTK--------------------------------------LT--CINLKQLSEIFINAISRRI 347 (778)
T ss_dssp -GGHHHHHHHHHHHTGGGT--------------------------------------CT--TCCHHHHHHHHHHHTTTCC
T ss_pred -HHHHHHHHHHHHHhcCCC--------------------------------------CC--cCcHHHHHHHHHHHHhcCC
Confidence 166778887777642100 00 0111224466677777665
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhhch-HHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEA-KKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~g-I~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~ 481 (2138)
.+ -+.+++..|+.+.-+++++..+.+..+ ++.|+.++.. .+..+...++..|.|++...+... .+...+..|..
T Consensus 348 ~~-~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~---~e~~~l~~Lk~ 423 (778)
T 3opb_A 348 VP-KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX---XXXXXXXXXXX 423 (778)
T ss_dssp HH-HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC---CCCC-------
T ss_pred cc-HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc---hhhhhhhhhhh
Confidence 44 489999999999999999999887755 9999999985 778889999999999998744311 11235566666
Q ss_pred HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcc
Q 000124 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561 (2138)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~ 561 (2138)
+.+.+.+........ +-+=......++..+.+.|++|.|+.+++++++.+|+.++++|.+|+. +...|..+.+.|+++
T Consensus 424 ~A~~~~p~~~~~d~~-~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~ 501 (778)
T 3opb_A 424 XXXXXXPAADKVGAE-KAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVK 501 (778)
T ss_dssp -----------CCTH-HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHH
T ss_pred hccccCcccCccccc-ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence 665433322221110 100000011256778899999999999999999999999999999987 477888899999999
Q ss_pred hhhhccccCChh---HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 562 AFLWLLKSGGPK---GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 562 aLv~LLkS~~~e---vq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
.|+.++.+++.. ++..|+.+|.++..+.+. .+ + . + .....|+
T Consensus 502 ~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np---------------~~---~---------f-~-------~~~~~~a 546 (778)
T 3opb_A 502 IILEYLANKQDIGEPIRILGCRALTRMLIFTNP---------------GL---I---------F-K-------KYSALNA 546 (778)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH---------------HH---H---------S-S-------SSCSTTH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH---------------HH---H---------c-C-------CCccccc
Confidence 999999987654 889999999999754321 00 0 0 0 0011267
Q ss_pred hhHHHHhhcC--CCH------------HHHHHHHHHHHHHhhcC----hhhhhhhhhC-CCHHHHHHHhccCCHHHHHHH
Q 000124 639 LRSLVQVLNS--SNE------------ENQEYAASVLADLFSMR----QDICGSLATD-EIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 639 I~aLV~LLks--~s~------------evre~Aa~ALanL~s~~----~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+++|+.++.. +.. -.+..|+.+|.||+..+ .+.+..+++. |+++.|..++.++++.+|+.|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 8889988872 111 23778999999999854 2567888886 999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchh-hhHHhcC------ChhhHHhhhhcCCHHHHHHHHHHHHHhh-CCchHHHHHHhc-CcHHHH
Q 000124 700 ARALGALSRPTKTKTTNK-MSYIAEG------DVKPLIKLAKTSSIDAAETAVAALANLL-SDPDIAAEVLLE-DVVSAL 770 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r-~~I~~~G------~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa-~~~e~r~~Ii~~-g~L~~L 770 (2138)
+++++||+.+ + ..+ ..+...+ .+++|+.++++++.++|.+|+++|+|++ .++..+..+.+. ++++.+
T Consensus 627 ~elI~NL~~~-~---e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~L 702 (778)
T 3opb_A 627 LELISNMMSH-P---LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENA 702 (778)
T ss_dssp HHHHHHHHTS-G---GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCC-c---HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHH
Confidence 9999999962 2 222 1222222 3778999999999999999999999996 588888888776 799999
Q ss_pred HHHHhC--CCHHHHHHHHHHHHHhhhcCCC--c-hhhhhhhhhhhhHHHHHHhhccCC
Q 000124 771 TRVLAE--GTSEGKKNASRALHQLLKHFPV--G-DVLKGNAQCRFVVLTLVDSLNAMD 823 (2138)
Q Consensus 771 V~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~--~-d~i~~~i~~~gav~~LV~LL~s~~ 823 (2138)
+.++.+ ++++++..++.++.||....+. . +.+..-.........|..+++..+
T Consensus 703 l~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 703 IQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 999999 8999999999999999973321 1 122222213445566666666543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-19 Score=240.90 Aligned_cols=704 Identities=13% Similarity=0.112 Sum_probs=442.3
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh---cCCHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR---SGTPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk---s~~~evr~~Aa~~L~~Ls 112 (2138)
..+..+.++++... +.+...|..|-..|..+...+ |....|..++. +.++.+|..|+-.|++..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYP-----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSH-----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34455666665543 457788899998887653322 34445555554 467899999999998765
Q ss_pred cC------chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 113 KD------EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 113 ~~------e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
.. ++.+..+. +.+++.|.++++.+|..++.++..++..... . .-.+.++.|++.+.+++
T Consensus 77 ~~~w~~~~~~~~~~ik-----~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~-------~wp~ll~~L~~~l~~~~-- 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFIK-----SECLNNIGDSSPLIRATVGILITTIASKGEL-Q-------NWPDLLPKLCSLLDSED-- 141 (852)
T ss_dssp TTSGGGCCHHHHHHHH-----HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-T-------TCTTHHHHHHHHHSCSS--
T ss_pred HHccCCCCHHHHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-c-------ccHHHHHHHHHHHcCCC--
Confidence 32 33344333 6677778888899999999999999863210 0 01358999999997654
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHH----HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhh--ccchH
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATL----EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI--DSGAV 260 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~----e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~--~~GaL 260 (2138)
..+++.++.+|..+|.........-. -...++.++..+.++++.+|..++.+|..+....+ ..+. -...+
T Consensus 142 -~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~---~~~~~~~~~~l 217 (852)
T 4fdd_A 142 -YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT---QALMLHIDSFI 217 (852)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC---HHHHTSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 56889999999999875432211000 01246777888888899999999999987663222 1111 12467
Q ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcC
Q 000124 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340 (2138)
Q Consensus 261 ~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGg 340 (2138)
+.+...+. +.+..+|..+..+|..+....++.-.... .+.++.++..+.+++
T Consensus 218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~-------------------------- 269 (852)
T 4fdd_A 218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD-------------------------- 269 (852)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS--------------------------
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc--------------------------
Confidence 77777766 46678888888888887764322111000 012222333222221
Q ss_pred chhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc
Q 000124 341 MPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2138)
Q Consensus 341 is~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~ 420 (2138)
+ .++..++..+..++.
T Consensus 270 ---------------------------------------------------------------~-~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 270 ---------------------------------------------------------------E-NVALEACEFWLTLAE 285 (852)
T ss_dssp ---------------------------------------------------------------H-HHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------H-HHHHHHHHHHHHHhc
Confidence 1 133333333333332
Q ss_pred CchhHHHHhhh--chHHHHHHHH-----------cc-----------CCHHHHHHHHHHHHHhhhccchhhHHhhhchhH
Q 000124 421 NIFLSQWVSHA--EAKKVLIGLI-----------TM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2138)
Q Consensus 421 n~~~~~~L~e~--~gI~~LV~LL-----------~s-----------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggI 476 (2138)
....++.+... ..++.++..+ .. .+..++..++.+|..++...++ .+ -...+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~-~~~l~ 361 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---EL-LPHIL 361 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GG-HHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHH
Confidence 22111111000 1122222222 11 1234578888999888865332 11 13467
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh--HHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACV 554 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~--~r~~I 554 (2138)
+.+.+++++.+..+|+.|+.+|++++....+. ....-.+.++.++.++++.++.+|..+++++++++..... ....
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~- 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-
Confidence 88888889999999999999999999754332 1122346788899999999999999999999998752110 0000
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~-- 625 (2138)
-.+.++.|+..+++.++.++..|+++|.+++.... ...++.|+.+++..+......+.++++.++.....
T Consensus 440 -~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 440 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhh
Confidence 12456778888888899999999999999986532 34567778888766655555677888877643221
Q ss_pred --hHHHHhhhcccchhhHHHH---hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----------
Q 000124 626 --EDLVQKGSAANKGLRSLVQ---VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS---------- 690 (2138)
Q Consensus 626 --~d~v~~~l~~~GaI~aLV~---LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d---------- 690 (2138)
++.+. ..++.+++ .+++.+++.+ .+..++..++..-....... -..+++.++.+++.
T Consensus 519 ~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~~~~~l~~~l~~~~~~~~ 590 (852)
T 4fdd_A 519 NKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQRCVNLVQKTLAQAMLNNA 590 (852)
T ss_dssp CCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12222 23555553 3445555554 67777777765311111110 11233334444321
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Cc-hHHHHH
Q 000124 691 -------NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP-DIAAEV 761 (2138)
Q Consensus 691 -------gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~-e~r~~I 761 (2138)
.+...+..+..+++.++..... ..+..+...+.++.++.++.+.+.++++.+..+++.++. .+ .....+
T Consensus 591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 591 QPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred CCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2456888889999998863322 333334456888999999999899999999999999974 22 222222
Q ss_pred HhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 762 i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
...+|.+.+.+..+++.+|..|+|+++.++... ++.+... ....++.|+.++++.+.+...+..|..++|.|+.
T Consensus 669 --~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~--~~~~~p~--~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 669 --ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--GIEMQPY--IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp --HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH--GGGGGGG--THHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--hHhHHHH--HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 236788888887788999999999999998753 1222221 2568899999998766666788899999999986
Q ss_pred cccCCcccCCcccccccCCCchHHHHHhhhc-CChHHHHHHHHHHHHhhccCCc
Q 000124 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPA 894 (2138)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~AieiL~~L~~~~~~ 894 (2138)
.... ...|. .+.-++++...+.. ++...+..|...|+.++..+|.
T Consensus 743 ~~~~--~~~~~------l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 743 VCPQ--EVAPM------LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HCHH--HHGGG------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred hCHH--HhCcc------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4111 11100 12235555566654 5556799999999999998875
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=212.76 Aligned_cols=241 Identities=26% Similarity=0.321 Sum_probs=217.7
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
++++.|+++++++++.+|..|+++|++++...++++..+.+.|+++.|+++|+++++.++..++++|++++.+++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999999877778999999999999999999999999999999999999987889999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
+.+.|+++.|+.+++++++.++..++++|.+++...+ + .+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~~~ 124 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD----------------E---------------------AIKAI 124 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH----------------H---------------------HHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----------------H---------------------HHHHH
Confidence 9999999999999999999999999999999973211 1 11223
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.+.|+++.|+.++++++++++..++++|.+|+..+++.+..+.+.|+++.|+.+++++++.++..|+++|.+++...
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB---
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---
Confidence 45688999999999999999999999999999978888889999999999999999999999999999999998632
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
+..+..+.+.|+++.|++++++++++++..|+++|+||..+
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 25677888999999999999999999999999999999864
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-20 Score=210.33 Aligned_cols=241 Identities=24% Similarity=0.302 Sum_probs=220.5
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
++++.|+.++.+++++++..++.+|.+++..+++.+..+.+.|+++.|+++++++++.++..++++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56888999999999999999999999999987778889999999999999999999999999999999999977889999
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
+.+.|+++.|+.+|+++++.++..++++|++|+.+++..+..+.+.|+++.|+.+++++++.++..++++|+|++...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999999999999997788888889999999999999999999999999999999974311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
.....+.+.|+++.|+.++++++++++..|+++|.+++..+++.
T Consensus 161 ------------------------------------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 161 ------------------------------------EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp ------------------------------------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 01112345788999999999999999999999999999888999
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s 709 (2138)
+..+.+.|+++.|+++++++++.++..|+++|.|+...
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999873
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-18 Score=217.28 Aligned_cols=568 Identities=14% Similarity=0.083 Sum_probs=396.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e 206 (2138)
+..++..|.++++++|..|++.|..++..- .+ .. .....+|.|...+ + .+..++..+..+|..++..-.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~---~~---~~-~~~~l~~~L~~~~-d---~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL---GV---ER-TRSELLPFLTDTI-Y---DEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS---CH---HH-HHHTHHHHHHHTC-C---CCHHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHh---CH---HH-HHHHHHHHHHHhc-C---CcHHHHHHHHHHHHHHHhccC
Confidence 678888899999999999999999887521 11 11 1234678887765 2 235688889999988775321
Q ss_pred chhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHH
Q 000124 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2138)
Q Consensus 207 ~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nL 286 (2138)
+. . ....-++.|..++.++++.+|..++.+|.+++...+. .......++.+..+.. +.+...|..+..++..+
T Consensus 81 ~~-~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 GP-E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVC 153 (588)
T ss_dssp SG-G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHH
T ss_pred cH-H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 11 0 1122467777777788899999999999999843321 1122234555555554 45678888888888887
Q ss_pred hhcCH-HHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHH
Q 000124 287 SSKSI-KAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365 (2138)
Q Consensus 287 s~~s~-e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L 365 (2138)
..... ..++ ..++.+..++.+++.. ++..|..+|.++......
T Consensus 154 ~~~~~~~~~~-----~l~~~l~~l~~d~~~~---------VR~~a~~~l~~l~~~~~~---------------------- 197 (588)
T 1b3u_A 154 YPRVSSAVKA-----ELRQYFRNLCSDDTPM---------VRRAAASKLGEFAKVLEL---------------------- 197 (588)
T ss_dssp TTTSCHHHHH-----HHHHHHHHHHTCSCHH---------HHHHHHHHHHHHHHTSCH----------------------
T ss_pred HHhcCHHHHH-----HHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHhcH----------------------
Confidence 66422 2222 2346666776666543 566677776665421110
Q ss_pred HHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCC
Q 000124 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445 (2138)
Q Consensus 366 ~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss 445 (2138)
..+ ...+.+.+..++.+.+. .+|..++.+|+.++.... ........++.+..++...+
T Consensus 198 ------------------~~~-~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~ 255 (588)
T 1b3u_A 198 ------------------DNV-KSEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKS 255 (588)
T ss_dssp ------------------HHH-HHTHHHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSC--HHHHHHHTHHHHHHHHTCSS
T ss_pred ------------------HhH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHccCCC
Confidence 000 12345777777777654 489999999988854321 11122345677788888888
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch-hHHHHHhcCCchHHHHH
Q 000124 446 ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGGIPPLVQL 524 (2138)
Q Consensus 446 ~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-~r~~I~~aGaIp~LV~L 524 (2138)
..+|..++.+|..++..... .......++.+++++++.++.+|..++.+|..++..... .+........+|.+..+
T Consensus 256 ~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 256 WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 99999999999998864211 112345688999999999999999999999999874332 12112234567888889
Q ss_pred hhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHH
Q 000124 525 LEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLA 599 (2138)
Q Consensus 525 Lks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----~~aI~~Li~ 599 (2138)
+++.++.+|..++++|..++..-. ... .....++.+..++++.+++++..+..+|..+..... ...+|.+.+
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~ 409 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILG--KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHC--HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhh--HhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999998864211 111 123467788888999999999999999998876421 357788999
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
++.+.+..++..+.++++.++...... ......++.+..++++++..+|+.|+.++..++..... ......
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~ 480 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGVE------FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHAT 480 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCGG------GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHH
Confidence 999988899999999999886543221 11223578888899999999999999999999763211 112346
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHH
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~ 759 (2138)
+++.|..++++.+..+|..++.+++.++... ........+++.|+.++++++++||..++.+|+.+...-. .
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~ 552 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVC------GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD--N 552 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHH------HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC--H
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc--h
Confidence 7788888888899999999999999997521 1122334688999999999999999999999999975211 1
Q ss_pred HHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 760 EVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 760 ~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
....+..+|.|..++.+.++++|..|.+++..+.
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 1223456777888888889999999999998764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-20 Score=210.89 Aligned_cols=240 Identities=21% Similarity=0.234 Sum_probs=214.5
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
...+.++.+++++++.+|..|+++|+++...+.+++..+.+.|+++.|+++|+++++.++..++++|++++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45789999999999999999999998876656778888999999999999999999999999999999999988889999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
+.+.|+++.|+.+++++++.++..++++|+|++...+ .....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------------------------~~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------------------------EQIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------------------------HHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------------------------hHHHHH
Confidence 9999999999999999999999999999999974311 011223
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+.+.|+++.|+++++++++.++..|+++|++++...
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--- 211 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--- 211 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC---
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC---
Confidence 46789999999999999999999999999999988888889999999999999999999999999999999998632
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
+..+..+.+.|+++.|+.++.+++++++..|+++|+||+.
T Consensus 212 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 212 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2567788899999999999999999999999999999974
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-17 Score=214.55 Aligned_cols=569 Identities=15% Similarity=0.091 Sum_probs=396.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre 165 (2138)
+..|+..|+++++++|..|+..|..++....... .....++.|...+ +++.++|..++..|..+...-. ..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~---- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GP---- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SG----
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cH----
Confidence 7788889999999999999999987753211100 1123456666655 5688999999999988774210 01
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 166 ~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
. .....++.|..++.++ +..++..|..+|.+++...... ......++.+..+..+++..+|..++.++..++.
T Consensus 83 ~-~~~~ll~~L~~l~~~~---~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 83 E-YVHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp G-GGGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred H-HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 0 1234677777766543 4679999999999999865432 1122346667677777788899999999998873
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~a 325 (2138)
..+ .......++.+..++. +.+..+|..+..++..+...... .......++.+..++.+++..
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~--------- 218 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDS--------- 218 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHH---------
T ss_pred hcC----HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHH---------
Confidence 221 1123346666667666 57789999999999998764221 112245567777777665533
Q ss_pred hHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000124 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2138)
Q Consensus 326 lqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e 405 (2138)
++..|..+|..++...++ + .....+.+.+..++.+.+.
T Consensus 219 vr~~a~~~l~~l~~~~~~----------------------------------------~-~~~~~~~~~l~~~~~d~~~- 256 (588)
T 1b3u_A 219 VRLLAVEACVNIAQLLPQ----------------------------------------E-DLEALVMPTLRQAAEDKSW- 256 (588)
T ss_dssp HHTTHHHHHHHHHHHSCH----------------------------------------H-HHHHHTHHHHHHHHTCSSH-
T ss_pred HHHHHHHHHHHHHHhCCH----------------------------------------H-HHHHHHHHHHHHHccCCCH-
Confidence 555666666655421110 0 0112344667777766544
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchh-hHHhhhchhHHHHHHHhc
Q 000124 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~-~~~I~e~ggIp~LV~LL~ 484 (2138)
.+|..++.+++.+..... ........++.++.++...++.++..++.+|..++..-... .........+|.+..+++
T Consensus 257 ~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC--cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 489999999998864321 11123356788899999999999999999999888753221 111122445788889999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
+.++.+|..++.+|..++...... ......+|.+..++++.++++|..++.+|..+....... . .....+|.+.
T Consensus 335 d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~ 408 (588)
T 1b3u_A 335 DANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIV 408 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHH
Confidence 999999999999999987632221 112346788899999999999999999888886521110 1 1134567788
Q ss_pred hccccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
.++++.++.++..++.++..++..- ....++.+.+++.+.+..++..+..+++.+.......... ...+
T Consensus 409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~ll 482 (588)
T 1b3u_A 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH------ATII 482 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH------HHTH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH------HHHH
Confidence 8888899999999999999998642 1357788999999999999999999999987654332221 2357
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhh
Q 000124 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2138)
Q Consensus 640 ~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~ 719 (2138)
+.|..++++.+..+|..++.++..++..-. .......+++.|++++++.++.+|..++.+|+.+...... .
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~ 553 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN------S 553 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH------H
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch------h
Confidence 888888888899999999999999976311 1123356889999999999999999999999999863221 1
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 720 I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
.....+++.|..++.+.+.++|..|..+|..+.
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 223446677888888999999999999998764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=209.95 Aligned_cols=240 Identities=18% Similarity=0.197 Sum_probs=214.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
...+.++.++.++++++|..++.+|.++...+.+.+..+.+.|+++.|+++++++++.++..|+++|++++..+++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34678999999999999999999998766655677888899999999999999999999999999999999877899999
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
+.+.|+++.|+++|+++++.+++.|+++|++|+.+.+.....+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 9999999999999999999999999999999998666654778889999999999999999999999999999974311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
. ....+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.
T Consensus 171 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 171 ---------------E---------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred ---------------H---------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 0 1112345788999999999999999999999999999878899
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+..+.+.|+++.|+++++++++.++..|+++|.||+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999974
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-16 Score=212.75 Aligned_cols=687 Identities=15% Similarity=0.124 Sum_probs=429.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHh-----cHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000124 51 NMSSPQERELITMRILTIAKA-----KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2138)
Q Consensus 51 ~s~s~~ere~AL~~L~~L~~~-----~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G 125 (2138)
.+.+...|..|.-.|.+.... +++.+..| -+.+++.|.+.++.+|..++.++..++..+... .-.+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i------k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI------KSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH------HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHH
Confidence 456778889898888887543 33444444 345666778889999999999999886533110 1125
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHH--HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhc
Q 000124 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIF--VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCG 203 (2138)
Q Consensus 126 ~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~I--veaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs 203 (2138)
.++.|++.+.++++.+++.++.+|..++.... .......+ .-...+|.+++.+.+. +..++..|+++|.++..
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~--~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSA--EILDSDVLDRPLNIMIPKFLQFFKHS---SPKIRSHAVACVNQFII 203 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT--THHHHCSSSSCHHHHHHHHTTTTTCS---SHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH--HHhchhhhcchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHh
Confidence 68899999998899999999999999986311 11000000 0123677777777643 46789999999998876
Q ss_pred CCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHH
Q 000124 204 DKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2138)
Q Consensus 204 ~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL 283 (2138)
........ .-...++.+...+.+++++++..++.+|..++...++...... .+.++.++..+. +.+..++..|...+
T Consensus 204 ~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~-~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 204 SRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALEACEFW 280 (852)
T ss_dssp TTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHcc-CCcHHHHHHHHHHH
Confidence 54321100 0113567888888888999999999999999965443222221 246777777777 46778999999999
Q ss_pred HHHhhcCHHHHHHHHh--cCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhH
Q 000124 284 EALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPV 361 (2138)
Q Consensus 284 ~nLs~~s~e~Rk~i~e--~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~ 361 (2138)
..++.. ...++.+.. ...++.++..+.....+. . +..+....- ..-.+....-+.....
T Consensus 281 ~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~-~----------------~~~~d~~ed-~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 281 LTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDI-I----------------LLKGDVEGG-SGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHH-H----------------HHHC-------------CCCCHHHHH
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHH-H----------------HhcCCcccc-cccccccccchHHHHH
Confidence 888764 223332211 123344444442211000 0 000000000 0000000000112223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHH
Q 000124 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI 441 (2138)
Q Consensus 362 A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL 441 (2138)
+..++.++... . .. + -..+.+.+..++.+.+ +.+|..++.+++.+.....-.-.-.-.+.++.++.++
T Consensus 342 ~~~L~~la~~~---~------~~-~-~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 342 AAALDVLANVY---R------DE-L-LPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp HHHHHHHHHHH---G------GG-G-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---c------HH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 33444443321 0 01 1 1245577778887765 4599999999999976543111112235688899999
Q ss_pred ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHH
Q 000124 442 TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPL 521 (2138)
Q Consensus 442 ~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~L 521 (2138)
.+.++.++..++.++.+++...........-.+.++.|+..+.+.++.+|..|+++|.+++...... ....-.+.++.|
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L 488 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTL 488 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHH
Confidence 9999999999999999988752221111122456888999998889999999999999998643221 111224567777
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhcCCh---hHHHHHHHcCCcchhh---hccccCChhHHHHHHHHHHHHHHhhch----
Q 000124 522 VQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFL---WLLKSGGPKGQDASAMALTKLIRAADS---- 591 (2138)
Q Consensus 522 V~LLks~d~~vre~Aa~aL~nLs~~sd---~~r~~I~e~GaI~aLv---~LLkS~~~evq~~Aa~AL~nLs~~~e~---- 591 (2138)
+.+++..+......+..++..++.... .....+ ...++.++ ..+++.+++++ .+..++..++..-..
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~--~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH--HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH--HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHH
Confidence 788887777776677777777753100 001111 12345555 34456667664 778888877765322
Q ss_pred ---hhHHHHHHHhcC-----------------CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH
Q 000124 592 ---ATINQLLALLLG-----------------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE 651 (2138)
Q Consensus 592 ---~aI~~Li~LL~~-----------------~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~ 651 (2138)
..++.++.++.. .+.+.+..+.++++.++..... .+...+...+.++.+...+++.++
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~ 643 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCCh
Confidence 223333444321 1345666777888887754332 122223345788999999988899
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHh
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~ 731 (2138)
++|+.+..++..++...++....... ..++.+.+.+..+...++..|+++++.++..... ... -.-..++++|+.
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~--p~~~~il~~L~~ 718 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQ--PYIPMVLHQLVE 718 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGG--GGTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHH--HHHHHHHHHHHH
Confidence 99999999999998644433333222 3678888888888889999999999999863221 221 122457888999
Q ss_pred hhhcC--CHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHHHHHHHhhhcCC
Q 000124 732 LAKTS--SIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 732 LL~s~--s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+++++ ...+++.|+.+++.|+. +|+.-.. .-...++++.+.|.. ++.+.+..|...++.+....|
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~-~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc-cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh
Confidence 98874 46899999999999986 3331110 123467778887764 567779999999999998764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-13 Score=192.82 Aligned_cols=1076 Identities=15% Similarity=0.142 Sum_probs=582.1
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-HHH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKK 295 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-~Rk 295 (2138)
.+..++.-+.++++++|..|..-|.+....+............++.++..+. +.+..+|..|..+|.++...... ...
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3667788888899999999988888765322111111223467888888887 57789999999999999865332 222
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000124 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2138)
Q Consensus 296 ~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l 375 (2138)
..++.|+..+.+++.. ++..+..+|..+.....+. ..
T Consensus 86 -----~i~~~Ll~~l~d~~~~---------vR~~a~~~L~~i~~~l~~~-----------~~------------------ 122 (1230)
T 1u6g_C 86 -----TIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA-----------SS------------------ 122 (1230)
T ss_dssp -----HHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC---------------------------------
T ss_pred -----HHHHHHHHHhcCCcHH---------HHHHHHHHHHHHHHhCCCc-----------cc------------------
Confidence 2346677766665533 4555666665553211000 00
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHhhhchHHHHHHHHccCCHHHHHHHH
Q 000124 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMATADVREYLI 453 (2138)
Q Consensus 376 ~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa 453 (2138)
...........+.+.|...+.......++..++.+++.++.. ..+.. .....++.++..+.+.+..+|..++
T Consensus 123 ----~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~ 196 (1230)
T 1u6g_C 123 ----GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTI 196 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 000000012245577777777433345899999999988632 11111 1134566777788888899999999
Q ss_pred HHHHHhhhccchhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHH
Q 000124 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 454 ~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~v 532 (2138)
.+|..++...++. + -...++.+++.+... +..+|..++.++..++...+. +..-.-...++.++..+.+.++++
T Consensus 197 ~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 197 IALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999988753221 1 134577888777544 346788889999988874332 111122456778888888888999
Q ss_pred HHHHHHHHHHHhcCCh-hHHHHHHHcCCcchhhhccc-------------------------------------cCChhH
Q 000124 533 REVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLK-------------------------------------SGGPKG 574 (2138)
Q Consensus 533 re~Aa~aL~nLs~~sd-~~r~~I~e~GaI~aLv~LLk-------------------------------------S~~~ev 574 (2138)
|+.+..++..+..... ..+..+ ...++.++..++ +....+
T Consensus 272 R~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v 349 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred HHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence 9999999988865321 111111 122333333332 112457
Q ss_pred HHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc-----------------hHHHH
Q 000124 575 QDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-----------------EDLVQ 630 (2138)
Q Consensus 575 q~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~-----------------~d~v~ 630 (2138)
|+.|+.+|..++.... ...++.++..+.+.+++++..+..++..+...... .+...
T Consensus 350 R~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 429 (1230)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHH
Confidence 8889999998875321 23467777778888889999999988877653211 11111
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhcC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSR 708 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~--~Vk~~AA~ALanLa~ 708 (2138)
.. -...++.+...+++.++.+|..++.+|..++...++.... .-...++.+...|.+.++ .++..++.++..+..
T Consensus 430 ~~--l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 430 SQ--VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HH--TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HH--hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 11 1224555666688899999999999999998743322211 113567788888888764 899999999998875
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Cc-------hHHHHHHhcCcHHHHHHHH--hCC
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP-------DIAAEVLLEDVVSALTRVL--AEG 777 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~-------e~r~~Ii~~g~L~~LV~LL--~~~ 777 (2138)
.... +... -.-..+++.|+..+.+.+..++..|+.++..++. .+ .....+ ...++.++..+ .+.
T Consensus 507 ~~~~-~~~~--~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 507 NHSP-QVFH--PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--KDLFTCTIKRLKAADI 581 (1230)
T ss_dssp SSCG-GGGH--HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--HHHHHHHHHHHSCSSS
T ss_pred hCCH-HHHH--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--HHHHHHHHHHHhccCC
Confidence 2222 0111 1224588889999999889998889889888863 11 111111 34677788888 667
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccc
Q 000124 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALA 857 (2138)
Q Consensus 778 ~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~ 857 (2138)
++.+|..|+.+++.|+... ++.+... -...++.|...+.. ...+..++.+++.++....... ...|
T Consensus 582 ~~~vr~~a~~~lg~L~~~~--g~~~~~~--~~~~l~~L~~~l~~----e~~r~~~~~al~~i~~~~~~~~--~~~~---- 647 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNL--GDNLGSD--LPNTLQIFLERLKN----EITRLTTVKALTLIAGSPLKID--LRPV---- 647 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHT--GGGCCTH--HHHHHHHHHHHTTS----SSHHHHHHHHHHHHTTCSSCCC--CHHH----
T ss_pred CHHHHHHHHHHHHHHHHHh--Cchhhhh--HHHHHHHHHHHhcc----chhHHHHHHHHHHHHhCccccc--hHHH----
Confidence 8999999999999999764 2222111 12344445555532 2357888999998885321100 0011
Q ss_pred cCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhcccc
Q 000124 858 EVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEH 937 (2138)
Q Consensus 858 ~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~k~~ 937 (2138)
.+..++.|...+.+.++.+|..++..|..++...+... . ..-+..+...++.- . ....
T Consensus 648 -~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~----~--~~~v~~~l~~ll~l-----l----------~~~D 705 (1230)
T 1u6g_C 648 -LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL----T--AAMIDAVLDELPPL-----I----------SESD 705 (1230)
T ss_dssp -HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC----C--HHHHHHHHTTCGGG-----S----------CTTC
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC----C--HHHHHHHHHHHHhh-----c----------Ccch
Confidence 12246677777778888899999999999988664211 0 00000111000000 0 0000
Q ss_pred hhhHHHHHhhcCCcHHHHHHHHHHhhhhccCCCCCcccccCCCccccccccccccCCcCCCCccchhhHHHHHHHHHhcc
Q 000124 938 KKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017 (2138)
Q Consensus 938 ~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~ 1017 (2138)
.. ....-...|..|.+. +|. .+ .+. ....+ =.++..+.+.
T Consensus 706 ~~----------~~~~~~~~L~~l~~~-----~~~-------------~~-------~~~----~~~~l-~~~~~~l~~~ 745 (1230)
T 1u6g_C 706 MH----------VSQMAISFLTTLAKV-----YPS-------------SL-------SKI----SGSIL-NELIGLVRSP 745 (1230)
T ss_dssp HH----------HHHHHHHHHHHHTTS-----CGG-------------GG-------GGT----TTTTH-HHHHHHHTCT
T ss_pred HH----------HHHHHHHHHHHHHHh-----Cch-------------hH-------HHh----HHhHH-HHHHHHHcCc
Confidence 00 000111112222221 100 00 000 00000 0111111111
Q ss_pred CCCCcchheeccchHHHHHHhhcc-CCCCccccccchhhhHHHHHHHHHccCCccccchhhhchHHHHHHHhcchhhhhH
Q 000124 1018 LRNNNVTVMEAGALEALSDKLASY-TSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDR 1096 (2138)
Q Consensus 1018 ~~~~k~~~~e~g~~~~l~~~l~~~-~~~~q~~~e~~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~r 1096 (2138)
.+...+++++..+.... ..++. ... .-.++..|++.-.....+ ...+..|
T Consensus 746 -------~~~~~~~~~l~~~~~~l~~~~~~---~~~-----~~~ll~~l~~~~~~~~~~--------------~~~~~~~ 796 (1230)
T 1u6g_C 746 -------LLQGGALSAMLDFFQALVVTGTN---NLG-----YMDLLRMLTGPVYSQSTA--------------LTHKQSY 796 (1230)
T ss_dssp -------TCCHHHHHHHHHHHHHHHTTCCT---TCS-----HHHHHHHHSTTTTTC------------------CCHHHH
T ss_pred -------ccchHHHHHHHHHHHHHHhcCCC---CCC-----HHHHHHHHhccccCCCCc--------------cccchhh
Confidence 11112233333222111 11110 001 122333333221100000 0133457
Q ss_pred HHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhhcccccCCchhhhhhhhhhhccCCcHHHHHhhhcccccccchhhhh
Q 000124 1097 FFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK 1176 (2138)
Q Consensus 1097 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~ 1176 (2138)
..+|+.++.++..... ..+ .++.+ +..++. +|+
T Consensus 797 ~~~a~~i~~~~~~~~~-----------~~~--~~~~~----------~~~~~~---~~~--------------------- 829 (1230)
T 1u6g_C 797 YSIAKCVAALTRACPK-----------EGP--AVVGQ----------FIQDVK---NSR--------------------- 829 (1230)
T ss_dssp HHHHHHHHHHHHHSCC-----------CSH--HHHTT----------TTTTTT---TTT---------------------
T ss_pred HHHHHHHHHHHHhcch-----------hhH--HHHHH----------HHHHhC---CCC---------------------
Confidence 7888887766542111 111 00000 111111 110
Q ss_pred hhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHhhcchhHHHHHHhcCCCCcccHHHHHHHHHHhhcCccccc
Q 000124 1177 SIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIR 1256 (2138)
Q Consensus 1177 ~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~l~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~ 1256 (2138)
..+.....++..|-.+...-+-.. +....+.+.+.|+. +.++.+.+|+..++.++. .
T Consensus 830 -------------~~~~~~~~~l~~l~~~g~~~~~~~----~~~l~~~~~~~l~~-~~~~Vr~aAa~aLg~l~~-----~ 886 (1230)
T 1u6g_C 830 -------------STDSIRLLALLSLGEVGHHIDLSG----QLELKSVILEAFSS-PSEEVKSAASYALGSISV-----G 886 (1230)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHSCCCS----CTHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH-----H
T ss_pred -------------ccHHHHHHHHHHHHHhcccCCCcc----cccHHHHHHHHhCC-CCHHHHHHHHHHhHHHhc-----c
Confidence 000000112111111110000000 01134666777764 678888888888888762 1
Q ss_pred chhhhhhHHHHHHHHHcCCCchHhHHHHHHhhhcccccccch-HhhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCC
Q 000124 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDS-DLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNT 1335 (2138)
Q Consensus 1257 ~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~-~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~ 1335 (2138)
+.. .-+..+...+..+ ...||....||.+.+......+. ..+.+...+|+..+....+.....+-.+|=+|..-.+
T Consensus 887 ~~~--~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 887 NLP--EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp THH--HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred CHH--HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 111 2244555556554 56799999999998864221111 1123444566666665555555555555555522211
Q ss_pred ccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccccchhhhhhhhhcCChhHHHHHHHHHHHh
Q 000124 1336 SKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415 (2138)
Q Consensus 1336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~~~~~~ 1415 (2138)
...+..+.+.|.+++ ...+..+...++.++++..=...+.-..++.||+..|+.+...|.+++..+|..
T Consensus 964 ----------~~l~p~l~~~l~~~~-~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 964 ----------ETLLPRLKGYLISGS-SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp ----------GGTHHHHTTTSSSSC-HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 345566666666644 446666666666666543211112235678899999999999999999999998
Q ss_pred hhhhhhhhhhhhhcchhhhhHhhcc------------------ccchhHHHHHHHHHHHhhcCCCchhHHHHhhhhHhHH
Q 000124 1416 LLDDEQQVELVEGYDVVDLLVRLVS------------------GTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNC 1477 (2138)
Q Consensus 1416 ll~~e~~~~~~~~~~~v~~lv~~~~------------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~ 1477 (2138)
+.......=...-...+.+|+.... -.+..+-+.|..|+-++=...+. ++++. -++.++
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~-~i~~~--~~~~~~ 1109 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD-RLDIF--EFLNHV 1109 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS-SSCHH--HHHHHH
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH-hCCHH--HHHHHH
Confidence 7643221100011224444444332 23347899999999999877665 34322 355555
Q ss_pred hhhCCCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCC----------CcCchhHHHHHHHHHHhhcCCc
Q 000124 1478 LDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQP----------DFSLWGQHSALQALVNILEKPQ 1547 (2138)
Q Consensus 1478 ~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~al~~l~~~~e~~~ 1547 (2138)
++=+|+-.+-=--+..-|.|+.+.+. -+..+..-..|+|+--++... +-...-++++|.++.-+...|.
T Consensus 1110 ~~gl~d~~di~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~ 1188 (1230)
T 1u6g_C 1110 EDGLKDHYDIKMLTFLMLVRLSTLCP-SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1188 (1230)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHSCC-HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HcccCchHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55556631111111222233333221 112245566778876665332 1234557899999998887776
Q ss_pred ccc
Q 000124 1548 SLV 1550 (2138)
Q Consensus 1548 ~~~ 1550 (2138)
+..
T Consensus 1189 ~~~ 1191 (1230)
T 1u6g_C 1189 AEK 1191 (1230)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-14 Score=198.73 Aligned_cols=688 Identities=12% Similarity=0.097 Sum_probs=402.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh
Q 000124 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2138)
Q Consensus 39 ~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~ 117 (2138)
..+.++++.+. +.+...|..|...|.+....+.. ...... ...++.+++.|.+.++.+|..|+.+|+.++..-..
T Consensus 6 ~~l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 34667777663 46777889898888776543200 000000 13578889999999999999999999988754221
Q ss_pred HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCCh--hhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000124 118 RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH--VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2138)
Q Consensus 118 r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~--~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al 195 (2138)
. .....++.++..|.++++.+|..|+.+|..++..... .. .....-.-...+|.|++.+.+. .+..++..++
T Consensus 82 ~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al 155 (1230)
T 1u6g_C 82 Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL 155 (1230)
T ss_dssp H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHH
Confidence 1 1123467888888888888999999999999864211 10 0000112235889999999742 2356899999
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
.+|..++......... .....++.+...|.++++.+|..++.+|..++...++ .+ -...++.++..+....+...
T Consensus 156 ~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhH
Confidence 9999998532111000 1122467788888888899999999999999853322 11 23467888888864443456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHH--hcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh---cC-chh----HH
Q 000124 276 RASAADALEALSSKSIKAKKAVV--AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY---GG-MPA----LV 345 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~--e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs---Gg-is~----LI 345 (2138)
+..+..++..+.....+ .+. -...++.++..+.+.+.+ +++.+..++..+. +. +.+ ++
T Consensus 231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~---------vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDE---------LREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTT---------THHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 77778888777653211 121 145678888888765433 5666666666554 21 222 23
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc-hh
Q 000124 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FL 424 (2138)
Q Consensus 346 ~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~-~~ 424 (2138)
+.+...+..........+ ...... .+ .....+... ...... -......+.+|..++.++..+.... ..
T Consensus 299 ~~ll~~l~~d~~~~~~~d--~~~~~~---~~--~~~~~~~~~--~~~~~~--~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 299 NICLKYLTYDPNYNYDDE--DEDENA---MD--ADGGDDDDQ--GSDDEY--SDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp HHHTTCCCCC-----------------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhCCCCCCCCccc--cccccc---cc--ccccccchh--hccccc--ccccccCHHHHHHHHHHHHHHHHhchhH
Confidence 333333322110000000 000000 00 000000000 000000 0011122347888999998886532 11
Q ss_pred HHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch----------------hhHH--hhhchhHHHHHHHhcCC
Q 000124 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG----------------IWEA--IGKREGIQLLISLLGLS 486 (2138)
Q Consensus 425 ~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~----------------~~~~--I~e~ggIp~LV~LL~s~ 486 (2138)
-.... ...++.++..+...++.++..++.++..+...... .... -.-...++.+.+.+++.
T Consensus 368 ~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 446 (1230)
T 1u6g_C 368 LPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446 (1230)
T ss_dssp HHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC
Confidence 11111 23456666677777888999999888776653110 0000 01123456666778889
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcC-C-hhHHHHHHHcCCcch
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH-S-EDIRACVESAGAVPA 562 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~-s-d~~r~~I~e~GaI~a 562 (2138)
++.+|..++.+|+.+....++.-. -.-...++.+...|++.. ..++.+++..+..+... . +.....+ ...++.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~ 523 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPP 523 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHH
Confidence 999999999999988874332111 011245677777787764 58999999999988542 2 2222222 457788
Q ss_pred hhhccccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh--cCCCcchHHHHHHHHHHHHhhhcch
Q 000124 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~nLs~~~e--------------~~aI~~Li~LL--~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
|+..+.+.++.++..+..++..++..-. ...++.++..+ .+.+.+++..+..+++.++......
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 8888888888888889889988875411 24567778888 5667789999999999987543221
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
.... -...++.|...+++ +..|..++.++..++...........-..+++.|...+++.+..+|..++.++..+
T Consensus 604 --~~~~--~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 604 --LGSD--LPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --CCTH--HHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --hhhh--HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0000 02235555555543 34677889999888763211111122345678888899999999999999999999
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~ 777 (2138)
....+. ......+ ...+..+..++++.+.++...+..+|+.+.........-.....++.++.++.+.
T Consensus 678 ~~~~~~--~~~~~~v-~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 678 IKNYSD--SLTAAMI-DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP 745 (1230)
T ss_dssp HHHCCT--TCCHHHH-HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT
T ss_pred Hhcccc--cCCHHHH-HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc
Confidence 873322 1100000 0112222344556788888899999999975321100012345666666666544
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-14 Score=191.09 Aligned_cols=738 Identities=13% Similarity=0.080 Sum_probs=446.2
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhccCc-
Q 000124 40 TVAKFLEQL-HANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDE- 115 (2138)
Q Consensus 40 ~V~qlLe~L-~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~~e- 115 (2138)
.+.++++.+ .. .+...|..|-..|..+...+ ..|.+..|..++.+. ++.+|..|+.+|++.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC
Confidence 466777665 43 56778999999998876542 134677788888764 6889999999998875321
Q ss_pred -----------------hhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHH
Q 000124 116 -----------------DLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178 (2138)
Q Consensus 116 -----------------~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~ 178 (2138)
+.+. ..-..+++.|.++++.+|..++.+|..++.... +.+ . -...+|.|++
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p~~--~--w~~ll~~L~~ 141 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEPRIANAAAQLIAAIADIEL---PHG--A--WPELMKIMVD 141 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---GGT--C--CHHHHHHHHH
T ss_pred hHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---ccc--c--cHHHHHHHHH
Confidence 1112 223577788888889999999999999986311 000 0 0237888888
Q ss_pred hhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHH--HHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCC-cch
Q 000124 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRAT--LEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPT 253 (2138)
Q Consensus 179 LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI--~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~-r~~ 253 (2138)
.+.++. ++.++..++.+|..++..-....+.+ ....-++.+...+.++ ++++|..++++|..+...-... ...
T Consensus 142 ~l~~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 219 (861)
T 2bpt_A 142 NTGAEQ--PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219 (861)
T ss_dssp HTSTTS--CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH
T ss_pred HHhcCC--CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccCh
Confidence 887652 35688999999999987532110000 0111356667777776 7899999999999875211000 000
Q ss_pred hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHH
Q 000124 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333 (2138)
Q Consensus 254 l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~A 333 (2138)
......++.+...+. +.+..+|..+..++..+....++.-........++.++..+.+.+.. ++..+...
T Consensus 220 ~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------vr~~a~~~ 289 (861)
T 2bpt_A 220 GERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK---------VASMTVEF 289 (861)
T ss_dssp HHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH---------HHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHH
Confidence 011224555666555 46778999999999888764221111111113445555555554422 45556655
Q ss_pred HHHhhcCc-------------------------hhHHHHhhhhcCCCC---------chhhHHHHHHHHHHHHHHhhcCC
Q 000124 334 LANIYGGM-------------------------PALVVYLGELSQSPR---------LAAPVADIIGALAYALMVFEQKS 379 (2138)
Q Consensus 334 LanIsGgi-------------------------s~LI~~L~elL~~~~---------ss~~~A~~L~aLa~~l~~l~q~~ 379 (2138)
+..++... ..+++.+...+.... ....+...+..++... .
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~---~--- 363 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC---G--- 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---G---
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---c---
Confidence 55543210 223444444444321 1122344444444322 1
Q ss_pred CCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCch---hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHH
Q 000124 380 GVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2138)
Q Consensus 380 ~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~---~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL 456 (2138)
.. . -..+.+.+...+.+.+ +.+|..++.+++.+..... ....+ ...++.++..+.+.++.++..++.++
T Consensus 364 ---~~-~-~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 364 ---NH-I-LEPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp ---GG-G-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ---Hh-H-HHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 01 1 1234566777777665 4589999999999975532 11111 24577788888888999999999999
Q ss_pred HHhhhccchhh-HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch---hHHHHHhcCCchHHHHHhhhC--CH
Q 000124 457 TKLCRREVGIW-EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAG--SQ 530 (2138)
Q Consensus 457 ~~Ls~~s~~~~-~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e---~r~~I~~aGaIp~LV~LLks~--d~ 530 (2138)
..++..-.... ..-.-...++.++..+++. +.++..++++|.+++....+ ....-.-...++.|+.++++. ++
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 436 GRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGG
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcch
Confidence 98886422110 0001234578888888765 88999999999999863210 100011123466777788754 37
Q ss_pred HHHHHHHHHHHHHhcCCh-hHHHHHHHcCCcchhhhcccc---------------CChhHHHHHHHHHHHHHHhhc----
Q 000124 531 KAREVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKS---------------GGPKGQDASAMALTKLIRAAD---- 590 (2138)
Q Consensus 531 ~vre~Aa~aL~nLs~~sd-~~r~~I~e~GaI~aLv~LLkS---------------~~~evq~~Aa~AL~nLs~~~e---- 590 (2138)
.+|..+..++..+..... .....+ ...++.++..+.+ ....++..+..+|.+++....
T Consensus 515 ~vr~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 515 NARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 899999999999876322 222221 1234445544432 134577889999998886532
Q ss_pred ---hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 591 ---SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 591 ---~~aI~~Li~LL~~~d~-~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
...++.++..+.+.+. .++..+..+++.++...... .. .. -...++.|...+++.++++|..++.++..++.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~-~~--l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-FE-KY--LETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GH-HH--HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HH-HH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 2356777888887766 88998988988887542211 11 00 12357888888887888899999999999876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC-------
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------- 737 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs--~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s------- 737 (2138)
.-.+.... .-...++.+.+.+.+.+ ..+|..+..+++.++...+. .... .-..++++|+..+....
T Consensus 669 ~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~--~l~~~l~~l~~~~~~~~~~~d~d~ 743 (861)
T 2bpt_A 669 SLEEDFRR-YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA--DFIP--YLNDIMALCVAAQNTKPENGTLEA 743 (861)
T ss_dssp HTGGGGHH-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHHHHHTCCCSSSSHHH
T ss_pred Hhchhccc-hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh--hHHH--HHHHHHHHHHHHHhcCCCCCChHH
Confidence 43221111 12356677778887764 78999999999999863222 2211 11346677777776421
Q ss_pred ----HHHHHHHHHHHHHhhCC-chHHHHHH--hcCcHHHHHHHHhCC----CHHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 738 ----IDAAETAVAALANLLSD-PDIAAEVL--LEDVVSALTRVLAEG----TSEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 738 ----~~Vr~eAl~ALaNLa~~-~e~r~~Ii--~~g~L~~LV~LL~~~----~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
..++..++.++..++.. .+....+. -...++.+...+.+. +..+|+.|..+++.|+...+ +..+...
T Consensus 744 ~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~-g~~~~~~- 821 (861)
T 2bpt_A 744 LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP-DGSIKQF- 821 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT-TSTTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC-CchHHHH-
Confidence 34677888888887631 10011111 123455555666653 88999999999999987541 1222211
Q ss_pred hhhhhHHHHHHhhcc-CCCCchhHHHHHHHHHHHh
Q 000124 807 QCRFVVLTLVDSLNA-MDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s-~~~~~~~~~~AL~ALa~La 840 (2138)
.....++.|+..++. .+.+...+..|.-+++.++
T Consensus 822 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 822 YGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp TTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 112467888888874 2333445666666666655
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=182.95 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=179.7
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..++.+.|+.+++++++.+|..|+++|++++..+++.+..+.+.|+++.|+++|+++++.+++.|+++|+|++.+++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35678899999999999999999999999998778889999999999999999999999999999999999998888888
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
..+.+.|+++.|+.+++++++.++..++++|+|++...+ + ...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~ 132 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------------E---------------------QIQ 132 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------H---------------------HHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH----------------H---------------------HHH
Confidence 999999999999999999999999999999999974311 0 011
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+.+.|+++.|+.+++++++++++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13457899999999999999999999999999999779999999999999999999999999999999999999974
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-14 Score=190.48 Aligned_cols=770 Identities=13% Similarity=0.084 Sum_probs=445.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcc-Cchh
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCK-DEDL 117 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~-~e~~ 117 (2138)
+.++++.+. +.+.+.|..|...|..+...+ ..+.++.|+..+.++ ++.+|..|+.+|++... ..+.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 455665553 467788999999998865432 135678888888774 58899999999988643 2111
Q ss_pred HHHH-----Hh------cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 118 RLKV-----LL------GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 118 r~~v-----~~------~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
+... .. ...-+.+++.|.++++.+ ..++.++..++.... . ... -...+|.|++.+.+++ .
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~---~--~~~--w~~ll~~l~~~l~~~~-~ 142 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI---P--VNQ--WPELIPQLVANVTNPN-S 142 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG---G--GTC--CTTHHHHHHHHHHCTT-C
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC---c--ccc--cHHHHHHHHHHHhCCC-C
Confidence 1110 00 011234778887777677 888889988875210 0 000 1347889999887652 1
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHH--hCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhhccchHH
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVK 261 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~e--~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~-r~~l~~~GaL~ 261 (2138)
++.++..++.+|..++..-... .+.. ...++.+...+..+ +..+|..++.+|..+....... .........++
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~ 220 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHH--HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHh--hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3568899999999998743211 1111 12356677777776 6889999999999887321100 00111112566
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCc
Q 000124 262 ALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGM 341 (2138)
Q Consensus 262 ~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgi 341 (2138)
.+...+. +.+..++..+..++..+....++.-........++.++..+.+.+.. ++..+...+.+++...
T Consensus 221 ~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 221 VVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHH
Confidence 6666665 45678888888888888764322111112223444444444332211 3333444333332100
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC
Q 000124 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421 (2138)
Q Consensus 342 s~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n 421 (2138)
... . ........+ .....+. .....+..
T Consensus 291 ~~~--------------------~--~~~~~~~~~-~~~~~~~------------------~~~~~~~~----------- 318 (876)
T 1qgr_A 291 MDL--------------------A--IEASEAAEQ-GRPPEHT------------------SKFYAKGA----------- 318 (876)
T ss_dssp HHH--------------------H--HHHHHHHHH-SSCCSSC------------------CCCHHHHH-----------
T ss_pred HhH--------------------h--hhhcccccc-CCCccch------------------hHHHHHHH-----------
Confidence 000 0 000000000 0000000 00000000
Q ss_pred chhHHHHhhhchHHHHHHHHc-------cCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHH
Q 000124 422 IFLSQWVSHAEAKKVLIGLIT-------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494 (2138)
Q Consensus 422 ~~~~~~L~e~~gI~~LV~LL~-------sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~A 494 (2138)
+ ...++.++..+. ..+..++..+..+|..++....+ .+. ...++.+.+.+.+.+..+|..+
T Consensus 319 ------~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 319 ------L--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp ------H--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred ------H--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHH
Confidence 0 112233344432 23456788888888888765321 111 3456777788888999999999
Q ss_pred HHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCCcchhhhccccC
Q 000124 495 VQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSG 570 (2138)
Q Consensus 495 a~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~---r~~I~e~GaI~aLv~LLkS~ 570 (2138)
+.+|+.++.... +.... .-...++.++..|.+.++.+|..|+++|.+++...... ...+ ...++.|+..+.+.
T Consensus 387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~ 463 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE 463 (876)
T ss_dssp HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC
Confidence 999999987443 21111 22457888999999999999999999999997642210 0110 23456677777774
Q ss_pred ChhHHHHHHHHHHHHHHhhc---------------------hhhHHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcch
Q 000124 571 GPKGQDASAMALTKLIRAAD---------------------SATINQLLALLLGD---SPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 571 ~~evq~~Aa~AL~nLs~~~e---------------------~~aI~~Li~LL~~~---d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
+.++..++++|.+++.... ...++.|.+++... +..++..+.++++.+......
T Consensus 464 -~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~- 541 (876)
T 1qgr_A 464 -PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK- 541 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-
T ss_pred -HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-
Confidence 8999999999999986521 23567777777654 346778889999988765332
Q ss_pred HHHHhhhcccchhhHHHHhhcC----------C-C----HHHHHHHHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhcc
Q 000124 627 DLVQKGSAANKGLRSLVQVLNS----------S-N----EENQEYAASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks----------~-s----~evre~Aa~ALanL~s~~~-e~r~~Ive~GaV~~Lv~LL~d 690 (2138)
+... .-...++.++..+.. . + ++++..+..++..++..-. +.... .-..+++.++.++++
T Consensus 542 ~~~~---~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~l~~~l~~ 617 (876)
T 1qgr_A 542 DCYP---AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ-ISDVVMASLLRMFQS 617 (876)
T ss_dssp TTHH---HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT-THHHHHHHHHHHC--
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH-HHHHHHHHHHHHHHh
Confidence 1110 011234555544431 2 2 4567888889988876432 11111 123567788888877
Q ss_pred CC--HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC--CchHHHHHHhcC
Q 000124 691 NT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS--DPDIAAEVLLED 765 (2138)
Q Consensus 691 gs--~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g 765 (2138)
.+ ..++..+..++..++..... ..... . ..+++.|...+.+. +.+++..|+.+++.++. .+.....+ ..
T Consensus 618 ~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~-~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ 691 (876)
T 1qgr_A 618 TAGSGGVQEDALMAVSTLVEVLGG--EFLKY-M-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC--DE 691 (876)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHGG--GGGGG-H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--HH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHh--hHHHH-H-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--HH
Confidence 64 47899999999998862211 11111 1 23677888888886 89999999999999975 22222222 45
Q ss_pred cHHHHHHHHhC--CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC--C-------chhHHHHHH
Q 000124 766 VVSALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM--N-------GTDVADALE 834 (2138)
Q Consensus 766 ~L~~LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~--~-------~~~~~~AL~ 834 (2138)
.++.+.+.+.+ .+..+|..+.+++++++... ++.+.... ...++.+...+....+ + ...+..++.
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~--g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAI--GGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH--GGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh--chhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 77788888876 46789999999999998742 12222111 3456666666643211 1 145667777
Q ss_pred HHHHHhhcc-cCCcccCCcccccccCCCchHHHH----HhhhcC--ChHHHHHHHHHHHHhhccCCc-hhhhhhhccccc
Q 000124 835 VVALLARTK-QGLNFTYPPWAALAEVPSSIEPLV----CCLAEG--PPPLQDKAIEILSRLCGDQPA-VLGDFLMARSSS 906 (2138)
Q Consensus 835 ALa~La~~~-~~~~~i~~~~~~~~~~~~~L~~Lv----~ll~~~--~~~vq~~AieiL~~L~~~~~~-~~~~~~~~~~~~ 906 (2138)
++..+...- .......+. .......++.+. ....++ ++.+|..|+.+|..++...+. ....+. .+.|
T Consensus 768 ~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~ 842 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPD---VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE--ARPM 842 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGG---GGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH--TSHH
T ss_pred HHHHHHHHHccCcccccch---HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH--hcHH
Confidence 777665321 110000000 000111233333 333455 567999999999999875432 122221 4578
Q ss_pred HHHHHHHHhccCCceeehhhhHHH
Q 000124 907 IGALADRIMHSSSLEVRVGGAALL 930 (2138)
Q Consensus 907 i~~La~~il~s~~~ev~~~~~~~~ 930 (2138)
+..|..+.+.++..++|..+...+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHH
Confidence 888988677778888887776655
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-13 Score=184.97 Aligned_cols=732 Identities=13% Similarity=0.102 Sum_probs=441.7
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 88 LFISIL-RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 88 ~LV~LL-ks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.++..+ .+++++.|..|-..|..+.... ..+.+..++.++.+ .++.+|..|+..|.+...... ....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w---~~~~ 77 (861)
T 2bpt_A 8 QLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD---SVKT 77 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS---HHHH
T ss_pred HHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC---hHHH
Confidence 344445 6788899999999998874321 12346778888876 379999999999999864211 0000
Q ss_pred H------H--H---HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-C-chhHHHHHhCcHHHHHHhhccC-CH
Q 000124 165 K------I--F---VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-D-GYWRATLEAGGVDIIVGLLSSD-NA 230 (2138)
Q Consensus 165 e------~--I---veaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e-~r~~aI~e~GGI~~Lv~lL~s~-s~ 230 (2138)
. . + ....+-..|++.+.+++ +.++..+..+|..+.... + +.|.. .++.|+..+.++ ++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~---~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIE---PRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCH
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCH
Confidence 0 0 0 11223456777776543 567888888888887653 1 23433 368888888888 89
Q ss_pred HHHHHHHHHHHHHHhhcCCCcc--hhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHH-HHHHhcCCHHHH
Q 000124 231 AAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAK-KAVVAADGVPVL 306 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~--~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~R-k~i~e~ggL~~L 306 (2138)
.++..++.+|..++..-....+ .-.....++.+...+... .+..+|..+..++.++...-...- ........++.|
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 9999999999999953221110 111234566667777643 267899999999888743211110 000001123444
Q ss_pred HHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCccc
Q 000124 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386 (2138)
Q Consensus 307 I~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~ 386 (2138)
...+.+++.+ ++..+..+|..+....+.. -...+
T Consensus 230 ~~~~~~~~~~---------~r~~a~~~l~~l~~~~~~~-------------------------------------~~~~l 263 (861)
T 2bpt_A 230 CEATQAEDIE---------VQAAAFGCLCKIMSKYYTF-------------------------------------MKPYM 263 (861)
T ss_dssp HHHHTCSCHH---------HHHHHHHHHHHHHHHHGGG-------------------------------------CHHHH
T ss_pred HHHhcCCCHH---------HHHHHHHHHHHHHHHHHHH-------------------------------------HHHHH
Confidence 4444443322 4555666655543211000 00000
Q ss_pred chhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHH---------------HHh--hhchHHHHHHHHccC-----
Q 000124 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ---------------WVS--HAEAKKVLIGLITMA----- 444 (2138)
Q Consensus 387 ~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~---------------~L~--e~~gI~~LV~LL~ss----- 444 (2138)
...+.+.+...+.+.+. .++..++..+..++....... .+. -...++.++..+...
T Consensus 264 -~~~l~~~~~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~ 341 (861)
T 2bpt_A 264 -EQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341 (861)
T ss_dssp -HHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-C
T ss_pred -HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00233445555555544 488888888887754421100 000 123456666666542
Q ss_pred --CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHH
Q 000124 445 --TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2138)
Q Consensus 445 --s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV 522 (2138)
+..++..+..+|..++...++ .+ -...++.+.+.+.+.+..+|+.++.+++.++.........-.-...++.|+
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGN---HI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGG---GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHccH---hH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 246788888999888865321 11 123466777788888999999999999999964321111111124677888
Q ss_pred HHhhhCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---------
Q 000124 523 QLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------- 590 (2138)
Q Consensus 523 ~LLks~d~~vre~Aa~aL~nLs~~sd~~---r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--------- 590 (2138)
..+++.++.+|..++++|+.++..-... ... -...++.++..+++. +.++..++++|.+++....
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 8888889999999999999987521000 000 023466777777775 8999999999999986521
Q ss_pred --hhhHHHHHHHhcCCC--cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC---------------CCH
Q 000124 591 --SATINQLLALLLGDS--PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---------------SNE 651 (2138)
Q Consensus 591 --~~aI~~Li~LL~~~d--~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks---------------~s~ 651 (2138)
...++.|++++...+ ++++..+.++++.+....... . ... -...++.++..+.. ...
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~-~~~--~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-V-AET--SASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-G-HHH--HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-h-HHH--HHHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 235677788887433 678999999999987653321 1 000 01235555555542 134
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHH
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLI 730 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~-~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv 730 (2138)
+++..+..+|.+++..-+...... -...++.++..+++.+. .++..+..+++.++..... .... .-..+++.|.
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~--~l~~i~~~l~ 645 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEK--YLETFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHH--HHHHHHHHHH
Confidence 577888999999887433322111 12567777888888776 8999999999998762221 2221 1234778888
Q ss_pred hhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCC--HHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 731 KLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGT--SEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 731 ~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~--~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
..+++.+.+++..++.++..++. +......+ ...++.+.+.+.+.+ +.+|..+..+++.++... ++.+....
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~l 721 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI--GADFIPYL 721 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH--GGGGHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh--hhhHHHHH
Confidence 88888888999999999998864 22222222 346777888887764 889999999999998753 12222111
Q ss_pred hhhhhHHHHHHhhccCCC--C-------chhHHHHHHHHHHHhhcccCC-cccCCcccccccCCCchHHHHHhhhcC---
Q 000124 807 QCRFVVLTLVDSLNAMDM--N-------GTDVADALEVVALLARTKQGL-NFTYPPWAALAEVPSSIEPLVCCLAEG--- 873 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s~~~--~-------~~~~~~AL~ALa~La~~~~~~-~~i~~~~~~~~~~~~~L~~Lv~ll~~~--- 873 (2138)
...++.++..+..... + ...+..++++++.+...-... .... .-.+.-+..+..++.+.
T Consensus 722 --~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~------~~~~~i~~~l~~~~~d~~~~ 793 (861)
T 2bpt_A 722 --NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF------PYVGTIFQFIAQVAEDPQLY 793 (861)
T ss_dssp --HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG------GGHHHHHHHHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH------HHHHHHHHHHHHHHcCcccC
Confidence 3466777777753210 1 234677788888777431110 0000 00111234444444443
Q ss_pred -ChHHHHHHHHHHHHhhccC-CchhhhhhhcccccHHHHHHHHh
Q 000124 874 -PPPLQDKAIEILSRLCGDQ-PAVLGDFLMARSSSIGALADRIM 915 (2138)
Q Consensus 874 -~~~vq~~AieiL~~L~~~~-~~~~~~~~~~~~~~i~~La~~il 915 (2138)
+..+|..|+.+|..++... ......|. ...++..|.+.+-
T Consensus 794 ~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 794 SEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTR 835 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCchHHHHH--hcHHHHHHHHHHh
Confidence 7789999999999998754 22222222 1267888887765
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=180.46 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=182.7
Q ss_pred chhhHHHHHHHHcCCCChhHHHHHHHHHHHHhh-cCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch
Q 000124 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 387 ~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~-~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
...+..+.|+.++++.+.+ ++..++.+|.+++ .++.....+.+.++++.|+.++.++++.++..++.+|.+++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3445668999999988765 9999999999998 5567788899999999999999999999999999999999988788
Q ss_pred hhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc
Q 000124 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC 545 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~ 545 (2138)
.+..+.+.|+++.|+++++++++.++..|+++|+|++.++++.+..+.+.|+++.|+++|+++++.++..++++|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998777788888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
+++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888999999999999999999999999999999999863
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=183.12 Aligned_cols=198 Identities=22% Similarity=0.253 Sum_probs=167.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRL 119 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~ 119 (2138)
+..+++.|+..+.+.+.+..|+..|.+++..++.+|..|.+ .|+||.|+++|+++++++|..|+.+|.+|+. +++++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 56677777665554467788999999999999999999988 8999999999999999999999999999997 588999
Q ss_pred HHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC---C----------CC
Q 000124 120 KVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP---K----------NK 185 (2138)
Q Consensus 120 ~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s---~----------s~ 185 (2138)
.+.+.|+||+|+++|.+ .+.++++.|+.+|++|+. .+.++..+++ +++|.|++++.. + ..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-----~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-----NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-----ChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999985 799999999999999996 4556778876 479999997741 1 11
Q ss_pred CChhHHHHHHHHHHHHhcCCCchhHHHHHhCc-HHHHHHhhccC------CHHHHHHHHHHHHHHHh
Q 000124 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2138)
Q Consensus 186 ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG-I~~Lv~lL~s~------s~evq~~A~~aL~nLs~ 245 (2138)
.+..++++|.++|+||++.++...+.|++++| |+.|+.+++.. +...+++|+.+|+||++
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 25579999999999999977555688888755 89999999863 56789999999999984
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=173.38 Aligned_cols=126 Identities=19% Similarity=0.357 Sum_probs=108.2
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC--CCCeEEEEEeecCC
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP--KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--~~~~l~~~~~~~~~ 2082 (2138)
+.+|.|.|+|++|.|| .+. |..||||++.+ .++++||+|+++++||+|||+|.|.+..++ ..+.|+|+|||++.
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~ 81 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIF-KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET 81 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEEC-SSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEE-CCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence 5789999999999999 456 89999999999 577788999999999999999999998765 47999999999999
Q ss_pred CCCc-ccceEEEEecceeecceecceee---cCCCCCCCCCccceEEEEEecCCCCC
Q 000124 2083 FGKS-TLGKVTIQIDKVVTEGVYSGLFN---LNHDNNKDSSSRTLEIEIIWSNRISD 2135 (2138)
Q Consensus 2083 ~~k~-~~g~~~~~~~~v~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~w~~~~~~ 2135 (2138)
+|++ .+|+|.|.|.++...+....+|. |.+. +++...+.+.++++|.+.+..
T Consensus 82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~-~~~~~~G~l~l~~~~~p~~~~ 137 (140)
T 2dmh_A 82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE-KGQDTGATIDLVIGYDPPSGP 137 (140)
T ss_dssp SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT-TCCEEEEEEEEEEEECCCBSS
T ss_pred CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC-CCCCCCCEEEEEEEEECCCCC
Confidence 9765 89999999999988888888888 7665 222344778899999998653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=181.19 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=163.0
Q ss_pred hHHHHHHHHccCCH--HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATA--DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~--evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.++.++.++.++++ ++|..++.+|.+++.++++++..+.+.|+||+|+++|+++++.+|+.|+++|+||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 47889999999887 8899999999999998888999999999999999999999999999999999999987789999
Q ss_pred HHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc---c-------------CChh
Q 000124 511 AITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---S-------------GGPK 573 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk---S-------------~~~e 573 (2138)
.+.+.|++|+|+++|++ ++.++++.++.+|+||+.+ +.++..+.+ +++++|+.++. + .+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999985 6999999999999999874 556666665 47999988653 1 2457
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc-ccchhhHHHHhhcCC---
Q 000124 574 GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA-ANKGLRSLVQVLNSS--- 649 (2138)
Q Consensus 574 vq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~-~~GaI~aLV~LLks~--- 649 (2138)
++++|+.+|.||+.. +++. ++.++ ..|.++.|+.+++++
T Consensus 167 v~~na~~~L~nLss~------------------------------------~~~~-R~~~r~~~Gli~~Lv~~l~~~~~~ 209 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSA------------------------------------GADG-RKAMRRCDGLIDSLVHYVRGTIAD 209 (233)
T ss_dssp HHHHHHHHHHHHTTS------------------------------------CHHH-HHHHHTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC------------------------------------CHHH-HHHHHHCCCcHHHHHHHHHhhhhc
Confidence 777888887777632 1112 23344 356789999998763
Q ss_pred ---CHHHHHHHHHHHHHHhh
Q 000124 650 ---NEENQEYAASVLADLFS 666 (2138)
Q Consensus 650 ---s~evre~Aa~ALanL~s 666 (2138)
+...+|+|+.+|.||+.
T Consensus 210 ~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 210 YQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TCTTCHHHHHHHHHHHHHCC
T ss_pred ccchhHHHHHHHHHHHHHHh
Confidence 56789999999999987
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-13 Score=178.71 Aligned_cols=698 Identities=13% Similarity=0.087 Sum_probs=395.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH--------HHHHHhh--hcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 000124 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKE--------ARLLIGS--HAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2138)
Q Consensus 42 ~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~--------ak~lI~~--~aGgVp~LV~LLks~~~evr~~Aa~~L~~L 111 (2138)
..++..+...+.+...|..|...|.+.....+. .+..+.. ....-+.+++.|.++++.+ ..++.++..+
T Consensus 38 ~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i 116 (876)
T 1qgr_A 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGI 116 (876)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHH
Confidence 334445554445677888898888886532211 1110000 0012244777788777777 7888888877
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChh
Q 000124 112 CKDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNV 189 (2138)
Q Consensus 112 s~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~ 189 (2138)
+....... .-...++.+++.+.++ ++.+|..++.+|..++... ....- .-.-...++.+.+.+..+. ....
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~---~~~~~-~~~~~~ll~~l~~~l~~~~-~~~~ 189 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI---DPEQL-QDKSNEILTAIIQGMRKEE-PSNN 189 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS---CHHHH-GGGHHHHHHHHHHHHSTTC-SCHH
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---CHhhH-HhHHHHHHHHHHHhhcCCC-CCHH
Confidence 64321100 0125678899999887 9999999999999998521 11100 0011235677777776542 1356
Q ss_pred HHHHHHHHHHHHhcCCCchh-HHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 190 VQGFVTGALRNLCGDKDGYW-RATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 190 V~e~Al~aL~nLcs~~e~r~-~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
++..++.+|.+++..-.... ........++.+...+...+++++..++.+|..+....+...........++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T 1qgr_A 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999875321110 00011124666777777778899999999999999655443333333366777777765
Q ss_pred cCCCHhHHHHHHHHHHHHhhcCHHHHH---HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHH
Q 000124 269 QNNDISVRASAADALEALSSKSIKAKK---AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345 (2138)
Q Consensus 269 s~sd~~vr~~Aa~aL~nLs~~s~e~Rk---~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI 345 (2138)
+.+..++..+...+..++........ .....+.-+ . .+...+. + ..+..+ ++.++
T Consensus 270 -~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~--------~----~~~~~l---l~~ll 327 (876)
T 1qgr_A 270 -SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP-----E-HTSKFYA--------K----GALQYL---VPILT 327 (876)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-----S-SCCCCHH--------H----HHHHHH---HHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc-----c-chhHHHH--------H----HHHHHH---hHHHH
Confidence 45678898998888888763111000 000000000 0 0000000 0 000000 01111
Q ss_pred HHhhhhcC-----CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc
Q 000124 346 VYLGELSQ-----SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2138)
Q Consensus 346 ~~L~elL~-----~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~ 420 (2138)
..+.+... +.+....+...+..++... . .. + -..+.+.+...+.+.+ +.+|..++.+++.+..
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~---~------~~-~-~~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCC---E------DD-I-VPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH---G------GG-G-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHC---c------Hh-h-HHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHc
Confidence 11111111 0111223334444444322 0 01 1 1244566777777655 4589999999999976
Q ss_pred Cch---hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhh-HHhhhchhHHHHHHHhcCCchhhHHHHHH
Q 000124 421 NIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW-EAIGKREGIQLLISLLGLSSEQHQEYAVQ 496 (2138)
Q Consensus 421 n~~---~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~-~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~ 496 (2138)
+.. .... -...++.++..+.+.+..++..++.+|.+++...+... ..-.-...++.++..+.+. +.++..+++
T Consensus 396 ~~~~~~~~~~--~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 396 GPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SSCHHHHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 532 2221 23467888899998899999999999999987633210 0001135677888888774 889999999
Q ss_pred HHHHHhhcCch-------------hHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHH-----------------
Q 000124 497 LIAILTEQVDD-------------SKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL----------------- 543 (2138)
Q Consensus 497 aL~nLa~~s~e-------------~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nL----------------- 543 (2138)
+|.+++....+ ......-...++.|...+... +..++..+..++..+
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 552 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH
Confidence 99999863210 000000112344444444332 223444444444333
Q ss_pred ---------------------------------------hcCCh--hHHHHHHHcCCcchhhhccccCC--hhHHHHHHH
Q 000124 544 ---------------------------------------CCHSE--DIRACVESAGAVPAFLWLLKSGG--PKGQDASAM 580 (2138)
Q Consensus 544 ---------------------------------------s~~sd--~~r~~I~e~GaI~aLv~LLkS~~--~evq~~Aa~ 580 (2138)
...-. ..... -...++.++.++++.. +.++..+..
T Consensus 553 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 553 VIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI--SDVVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT--HHHHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH--HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 22110 00000 0123455666676654 478999999
Q ss_pred HHHHHHHhhc-------hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC--CC
Q 000124 581 ALTKLIRAAD-------SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SN 650 (2138)
Q Consensus 581 AL~nLs~~~e-------~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks--~s 650 (2138)
++..++.... ...++.+...+.+. ++.++..+.++++.+....... +... -...++.++..+++ .+
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~--~~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIPF--CDEVMQLLLENLGNENVH 706 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHHH--HHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhhh--HHHHHHHHHHHhCCcccc
Confidence 9999886421 34567788888876 7888999999999887543211 1110 13457788888876 36
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC----H-------HHHHHHHHHHHHhcCCCCccc---ch
Q 000124 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT----Q-------MVATQSARALGALSRPTKTKT---TN 716 (2138)
Q Consensus 651 ~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs----~-------~Vk~~AA~ALanLa~s~~~~d---~~ 716 (2138)
.++|..+..++.+++....+..... -..+++.+.+.+.... + .+|..+..++..+........ ..
T Consensus 707 ~~~~~~~~~~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 707 RSVKPQILSVFGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HHhhHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 7899999999999976322221111 1345566666665432 2 677778888876654111000 00
Q ss_pred -hhhHHhcCChhhHHhh----hhcC--CHHHHHHHHHHHHHhhCC--c-hHHHHHHhcCcHHHHHH-HHhCCCHHHHHHH
Q 000124 717 -KMSYIAEGDVKPLIKL----AKTS--SIDAAETAVAALANLLSD--P-DIAAEVLLEDVVSALTR-VLAEGTSEGKKNA 785 (2138)
Q Consensus 717 -r~~I~~~G~V~~Lv~L----L~s~--s~~Vr~eAl~ALaNLa~~--~-e~r~~Ii~~g~L~~LV~-LL~~~~~~Vr~~A 785 (2138)
...+ ...++.++.. ..+. +..+|..|+.+|+.|+.. . ... .......+++++. .+.+.++.+|..|
T Consensus 786 ~~~~~--~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 786 DVMLV--QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK-LVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp GGGGS--GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH-HHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred hHHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHH-HHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 0000 1123333333 3555 789999999999999752 2 222 2334567888888 8999999999999
Q ss_pred HHHHHHhhh
Q 000124 786 SRALHQLLK 794 (2138)
Q Consensus 786 a~AL~nL~~ 794 (2138)
+++++++..
T Consensus 863 ~~a~~~~~~ 871 (876)
T 1qgr_A 863 RWATKELRK 871 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999886
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=165.44 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=100.1
Q ss_pred CceEEEEEecccccc-----cccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK-----QTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
+|.|.|+|++|.||. +..|+.||||++.++.. ..+||+|+++++||+|||+|.|.+..+ ..+.|+|+||+++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 689999999999996 45699999999999543 445799999999999999999999765 6899999999999
Q ss_pred CCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2082 TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2082 ~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
.++.+.+|++.|.|.++...++...+|+|.+. ..+.+++.+++++
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~-----~~g~i~~~le~~~ 125 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQV-----TEMVLEMSLEVAS 125 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTT-----EEEEEEEEEECCC
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCCC-----ceEEEEEEEEeCC
Confidence 99999999999999999888889999999875 3344446666553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=173.37 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHH-HHhcCCHHHHHHH
Q 000124 36 STMSTVAKFLEQLHAN----------MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNV 104 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~----------s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~-LLks~~~evr~~A 104 (2138)
.-...+...++.+.+. +.+.+.|..|+..|..++...++++.+ .+ .||+|.|+. +|++++++++..|
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~-~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQ-LSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HH-TTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HH-cCCHHHHHHHHHcCCCHHHHHHH
Confidence 3455677777777764 334567899999999999987666555 44 799999999 9999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC
Q 000124 105 AATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182 (2138)
Q Consensus 105 a~~L~~Ls~~-e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s 182 (2138)
+.+|++++.+ +..+..++..|++++|+++|.+ .+..+++.|+++|.+++.+ ...+.+.+.+.|++|.|+.+|.+
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~----~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999865 5688889999999999999997 4899999999999999973 45567889999999999999986
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000124 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2138)
Q Consensus 183 ~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~ 246 (2138)
++ ..++..|+++|.+++.+++.....+.+.|+++.|+.+|.+++..+++.++.+|.+|...
T Consensus 179 ~d---~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QV---QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SC---HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 53 67999999999999998877888999999999999999999999999999999999954
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-16 Score=169.87 Aligned_cols=115 Identities=16% Similarity=0.261 Sum_probs=97.2
Q ss_pred hcCCceEEEEEecccccc--cc----------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeE
Q 000124 2006 HCLPGCLTVTIKRGNNLK--QT----------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKL 2073 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l 2073 (2138)
.-+.|.|.|+|.+|.||. +. .|..||||++.+++...+|||++++++||+|||+|+|.+.+ ++.|
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~~L 101 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GGHL 101 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEE
T ss_pred ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CCEE
Confidence 356799999999999994 31 25689999999944333579999999999999999999865 4799
Q ss_pred EEEEeecCCCCC-cccceEEEEecceeec----ceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2074 HIICKSKNTFGK-STLGKVTIQIDKVVTE----GVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2074 ~~~~~~~~~~~k-~~~g~~~~~~~~v~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
.|+||+++.||+ +.+|+|.|.|.++..+ +.+..+|+|.+ .|+++ ++++|+
T Consensus 102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~----~G~i~---l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP----EGKVF---VVITLT 156 (157)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS----SCEEE---EEEEEC
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC----CcEEE---EEEEEE
Confidence 999999999985 5999999999999977 78999999976 35555 889986
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=174.71 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHH-HHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIG-LITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~-LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
-+..++..|..+..+.++...+...|+++.++. ++.+++++++..|+.+|++++.+++..+..+.+.|++++|++++++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 677888889999998888888999999999999 9999999999999999999999988999999999999999999985
Q ss_pred -CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 486 -SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 486 -~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
.+..+++.|+++|+|++.+++.....+.+.|+++.|+.+|++++..++..|+++|.+|+.++++.+..+.+.|+++.|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 4788999999999999987777777888899999999999999999999999999999987788889999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.+++++++.+++.++.+|+++...
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999854
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=160.05 Aligned_cols=117 Identities=21% Similarity=0.366 Sum_probs=98.8
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-C
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-K 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k 2085 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ .++++||+|+++++||.|||+|.|.+.++ ++.|+|+|||++.+| .
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~~~~~ 88 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLEL-GNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKPP 88 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEE-TTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEE-CCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCCCCCC
Confidence 58999999999999 455689999999999 56677899999999999999999999864 689999999999996 5
Q ss_pred cccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2086 STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+.+|++.|.|.++.. |. ..+|+|.+...++...+.+.++++|.
T Consensus 89 ~~lG~~~i~l~~l~~-~~-~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 89 DFLGKVAIPLLSIRD-GQ-PNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EECCBCEEEGGGCCS-SC-CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CeeEEEEEEHHHccC-CC-ceEEEeecCCCCCccceEEEEEEEEE
Confidence 789999999999854 43 47899987644444667777888774
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=161.51 Aligned_cols=121 Identities=18% Similarity=0.331 Sum_probs=102.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG 2084 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~ 2084 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+ .+.++||++++ +++||.|||+|.|.+.+ ..+.|+|+||+++.++
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC-RTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVGT 84 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES-SSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSCT
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEE-CCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCCC
Confidence 458999999999999 456689999999999 56677899999 99999999999999986 5789999999999997
Q ss_pred C-cccceEEEEecceeecce-ecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2085 K-STLGKVTIQIDKVVTEGV-YSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2085 k-~~~g~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
+ +.+|++.|.|.++...|. ...+|+|... ....+.+.+.++|.+...
T Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~---~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEECCS
T ss_pred CCceEEEEEEEHHHhccCCCCCcEEEEeecC---CccCEEEEEEEEEEeCCC
Confidence 4 789999999999987775 4567999832 234566779999988643
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=160.52 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=98.2
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCC-----CCccccccccCCCCCccccceeeecCCCCCCeEEEEEee
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG-----PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKS 2079 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~ 2079 (2138)
--.|.|.|+|++|.|| .+..|..||||++.++.. ..+||+|+++++||.|||+|.|.+.. ..+.|+|+|||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~l~~~V~d 94 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP--QQHRLLFEVFD 94 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT--TTCEEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC--CCCEEEEEEEE
Confidence 4578999999999999 455689999999999632 24479999999999999999998874 36899999999
Q ss_pred cCCCCC-cccceEEEEecceeeccee------cceeecCCCCCCCCCccceEEEEEecC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVY------SGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
++.+|+ +.+|++.|.|.++...+.- ..+|.|.+.+.++...+.+.|.+.|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999975 5899999999999886642 478999876444555678889999865
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-15 Score=157.71 Aligned_cols=117 Identities=16% Similarity=0.406 Sum_probs=100.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC---
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF--- 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~--- 2083 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ .+..++|+++++++||.|||+|.|.+..+ ++.|+|+||+++.+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE-TTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE-CCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCccc
Confidence 59999999999999 556799999999999 56777899999999999999999988765 58999999999985
Q ss_pred ---------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2084 ---------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2084 ---------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
..+.+|++.|.|.++ .+....+|+|.+.+.++...+.+.+++...
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 678999999999998 567789999997645555566666777654
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-15 Score=163.13 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=96.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.++... .+||+|+++++||.|||+|.|.+. |..+.|+|+||+++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~L~~~V~d~d 84 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL--PQRHRILFEVFDEN 84 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC--TTTCEEEEEEEECC
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc--CCCCEEEEEEEECC
Confidence 58999999999999 5667999999999996432 347999999999999999999886 45689999999999
Q ss_pred CCCC-cccceEEEEecceeecceec------ceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYS------GLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.+++ +.+|+|.|.|.++...+... .+|.|.+...+....+.+.+.+.|.|.
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 9976 78999999999999876542 689999874555456888899999886
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-15 Score=158.92 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=95.1
Q ss_pred cCCceEEEEEecccccc--cccCC-----------CCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeE
Q 000124 2007 CLPGCLTVTIKRGNNLK--QTMGT-----------TNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKL 2073 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l 2073 (2138)
.+.|.|.|+|++|.||. +..|+ .||||++.+++.+.++|+++++++||.|||+|+|.+.++ +.|
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L 79 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKI 79 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEE
Confidence 45799999999999994 33333 899999999544335799999999999999999999865 899
Q ss_pred EEEEeecCCCCC-cccceEEEEecceeec--ceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2074 HIICKSKNTFGK-STLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2074 ~~~~~~~~~~~k-~~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|+||+++.+|+ +.+|++.|.+.++..+ +.+..+|.|.+. |+ +.+.+.|.+
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~----G~---i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE----GK---VYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS----CE---EEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCC----eE---EEEEEEEEe
Confidence 999999999975 5899999999999985 356888988764 44 448888865
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=154.99 Aligned_cols=108 Identities=18% Similarity=0.324 Sum_probs=92.1
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.|| .+..|..||||++.+. .+..+||+|+++++||+|||+|.|.+-. ......|+|+||++
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 58999999999999 4566889999999993 3455679999999999999999998421 12568999999999
Q ss_pred CCCC---CcccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2081 NTFG---KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2081 ~~~~---k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
+.++ .+.+|++.|.|.++..++ ...+|+|.+. +.|+
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~--~~g~ 138 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTH--DSGP 138 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC--SSCC
T ss_pred CCCcCCCCceEEEEEEEccccCCCC-CCceEECccc--ccCC
Confidence 9998 589999999999998876 8899999998 5554
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-11 Score=161.85 Aligned_cols=363 Identities=13% Similarity=0.123 Sum_probs=246.3
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCch-hHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIF-LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~-~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+.+.|..++.+.+. .++..|+.+|+.++.+.. ....-...+.+..|+..+...++-.|.....++..++..++...
T Consensus 161 ~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-- 237 (591)
T 2vgl_B 161 FLDSLRDLIADSNP-MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-- 237 (591)
T ss_dssp HHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH--
T ss_pred HHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH--
Confidence 34556666665544 377777777777754421 10000011335566666667788888888888888875533221
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc---CchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ---VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~---s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~ 546 (2138)
...++.+..++++.++.++..|+.++.++... +++.-..+ -....++|+.++ ++++++|..++..|..+...
T Consensus 238 ---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 238 ---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp ---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 34577888889999999999999999998742 22222222 234567788766 47999999999999999763
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~ 625 (2138)
... .+ ...+..++.+ .+++..++..+...|.++++..+ ...++.|...+++.+.+++..+.++++.++...+.
T Consensus 313 ~p~---~~--~~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 313 RPE---IL--KQEIKVFFVK-YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp CCS---TT--TTCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ChH---HH--HHHHHhheec-cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 221 00 1122222222 24448899999999999986543 34678888889898999999999999988754221
Q ss_pred hHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 000124 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALG 704 (2138)
Q Consensus 626 ~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALa 704 (2138)
. ....++.|+.+++...+.++..+..++.++....++. ...++..|.+.+.+ ..+.++..++|+|+
T Consensus 387 --~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilG 453 (591)
T 2vgl_B 387 --S------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVG 453 (591)
T ss_dssp --H------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHH
T ss_pred --H------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1 1236899999999999999988899999997755543 35678889998875 56789999999999
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-hC-CCHHH
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-AE-GTSEG 781 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~~-~~~~V 781 (2138)
..+...+. ....++.+++-+...+..+|..++.++..+.. .|+.. ...+..+.+.. .+ .++++
T Consensus 454 ey~~~~~~---------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-----~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 454 EYAERIDN---------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-----QELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp TTCTTCTT---------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-----HHHHHHHHHHHHTTCCCHHH
T ss_pred cccccccC---------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHHhhhcCCChHH
Confidence 99763322 11245556655666789999999999999976 34321 12344455543 44 68899
Q ss_pred HHHHHHHHHHhhh
Q 000124 782 KKNASRALHQLLK 794 (2138)
Q Consensus 782 r~~Aa~AL~nL~~ 794 (2138)
|+.|...+.-+..
T Consensus 520 rdRA~~y~~ll~~ 532 (591)
T 2vgl_B 520 RDRGYIYWRLLST 532 (591)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCc
Confidence 9999987755533
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-15 Score=154.23 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=93.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k 2085 (2138)
+..|.|+|++|.|| .+..|..||||++.++. +..+||+|+++++||+|||+|.|.+..+ +.|+|+||+++.+|+
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTTS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCCC
Confidence 45699999999999 56678999999999954 3555799999999999999999999754 569999999999986
Q ss_pred ----cccceEEEEecceeec-ceecceeecCCCCC--CCCCccceEEEEEe
Q 000124 2086 ----STLGKVTIQIDKVVTE-GVYSGLFNLNHDNN--KDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2086 ----~~~g~~~~~~~~v~~~-~~~~~~~~l~~~~~--~~~~~~~~~~~~~w 2129 (2138)
+.+|+|.|.+.++-.. ..-...|+|...+. +....+.+.|+|.+
T Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999998887332 22235688877521 12236777788876
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-15 Score=159.72 Aligned_cols=111 Identities=19% Similarity=0.363 Sum_probs=95.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
.+|.|.|+|++|.|| .+..|..||||++.+.. ...+||+|+++++||.|||+|.|.+..+.....|+|+|||++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 479999999999999 45568899999999964 345579999999999999999999876556789999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCCCCCCCCcc
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 2121 (2138)
.+++ +.+|+|.|.|.++... ....+|+|.+. ++|+.+
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~--~~g~~~ 146 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ--EEGEYF 146 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH--HHHTTC
T ss_pred CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC--CCCccc
Confidence 9975 5799999999998764 58889999988 666655
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-15 Score=159.07 Aligned_cols=115 Identities=16% Similarity=0.299 Sum_probs=95.9
Q ss_pred CCceEEEEEecccccccc-cCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.||... .|..||||++.+.. ...+||+|+++++||.|||+|.|.+......+.|+|+||+++.
T Consensus 25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 104 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS 104 (153)
T ss_dssp SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence 368999999999999332 38899999999942 2344699999999999999999999655566789999999999
Q ss_pred CCC--cccceEEEEecceee-cceecceeecCCCCCCCCCccceE
Q 000124 2083 FGK--STLGKVTIQIDKVVT-EGVYSGLFNLNHDNNKDSSSRTLE 2124 (2138)
Q Consensus 2083 ~~k--~~~g~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~ 2124 (2138)
+++ +.+|.|.|.|.++.. .+.+.++|.|.+. +.|+.+.+.
T Consensus 105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~--~~g~~~~lk 147 (153)
T 3fbk_A 105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE--HLGRTKHLK 147 (153)
T ss_dssp SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT--TGGGTCCCB
T ss_pred CCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh--hhcccccce
Confidence 875 799999999999985 7889999999998 667665443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-11 Score=154.72 Aligned_cols=460 Identities=14% Similarity=0.124 Sum_probs=315.8
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHh-
Q 000124 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL- 111 (2138)
Q Consensus 35 ~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~L- 111 (2138)
++...+|..+.+.+.. ++-.++|..|+..|..+++ .++..+.. +|++.|+..|+.. +.++...++.+|.++
T Consensus 17 qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk---~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 17 HTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSK---KYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp -CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTT---TTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHH---HhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 4677888999999966 5778999999999999975 35666654 7999999999874 788889999999765
Q ss_pred ccCchh-----------------HHHH-HhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc-Cc
Q 000124 112 CKDEDL-----------------RLKV-LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GV 172 (2138)
Q Consensus 112 s~~e~~-----------------r~~v-~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea-G~ 172 (2138)
+.+++. ...+ ...+.|+.|+.+|.+++..+|..+++.|..|+.+ +.+...+.+... ++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~---r~~~~Q~~Il~~p~g 167 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ---LGPQVQQIILVSPMG 167 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---SHHHHHHHHHHSTTH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc---CcHHHHHHHHhCccc
Confidence 433221 1122 2348899999999999999999999999999984 344467778755 99
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCH----HHHHHHHHHHHHHHhhcC
Q 000124 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA----AAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 173 Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~----evq~~A~~aL~nLs~~~~ 248 (2138)
|+.|+++|.++. ..++..++..|.+|+.++...++.+.-.|+++.|..++..+.. .+.+-|+.+|.+|...++
T Consensus 168 i~~Lv~lL~d~r---E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 168 VSRLMDLLADSR---EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHGGGGCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCch---HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 999999998765 4689999999999999999998888889999999999987543 688999999999998888
Q ss_pred CCcchhhccchHHHHHHHhccCCCH-----hHHHH---HHHHHHHHhhc------CHHHHHHHHhcCCHHHHHHhhcCCc
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDI-----SVRAS---AADALEALSSK------SIKAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~-----~vr~~---Aa~aL~nLs~~------s~e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
.++..+.+.|+++.|..++..+.+. ....+ +..++.-+... +..+++.+.+.|+++.|++++..+.
T Consensus 245 sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~ 324 (651)
T 3grl_A 245 SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATG 324 (651)
T ss_dssp HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 8889999999999999999743221 01122 34444444332 3467788999999999999988753
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
. ...++..|+.+++.+..+-+..-..+.... -+... ....+...
T Consensus 325 ~-------p~~i~~~Al~tla~~irgN~~~Q~~fa~~~-------------------------vp~~~----~~p~li~l 368 (651)
T 3grl_A 325 V-------PADILTETINTVSEVIRGCQVNQDYFASVN-------------------------APSNP----PRPAIVVL 368 (651)
T ss_dssp C-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHCE-------------------------ESSSS----CEEHHHHH
T ss_pred C-------CHHHHHHHHHHHHHHHhCCHHHHHHHhhcc-------------------------CCCCC----CcChHHHH
Confidence 1 112666677777776544333211111100 00000 01123345
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhh------c-------hHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA------E-------AKKVLIGLITMATADVREYLILSLTKLC 460 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~------~-------gI~~LV~LL~sss~evq~~Aa~aL~~Ls 460 (2138)
|..++.+.....+|..++.++... +.|++.+..+... + .-..+..-+-+.++..-.-|+.+|.++-
T Consensus 369 L~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll 448 (651)
T 3grl_A 369 LMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHAL 448 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHH
Confidence 556666666667888888888776 5676666555432 1 1123444444566665566778888888
Q ss_pred hccchhhHHhhh------c-----hhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcC-CchHHHHHhhh
Q 000124 461 RREVGIWEAIGK------R-----EGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAG-GIPPLVQLLEA 527 (2138)
Q Consensus 461 ~~s~~~~~~I~e------~-----ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG-aIp~LV~LLks 527 (2138)
.+++..+..+.+ . -.++.+...+.. .++.++..=+..|+.....+++.-..+...| .++.|++.+..
T Consensus 449 ~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 449 QENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp TTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred cCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 887777654432 1 124555555543 3445555555666666666666666666665 48888887743
Q ss_pred --C--CHHHHHHHHHHHHH
Q 000124 528 --G--SQKAREVAAHVLWI 542 (2138)
Q Consensus 528 --~--d~~vre~Aa~aL~n 542 (2138)
+ +.-++.-++..|+-
T Consensus 529 ~~~~~~~lvqGL~a~LLGi 547 (651)
T 3grl_A 529 NLGEEEQLVQGLCALLLGI 547 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 2 23345555544443
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=154.19 Aligned_cols=111 Identities=22% Similarity=0.314 Sum_probs=92.9
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~~ 2081 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||+|||+|.|.+-. -.....|+|+||+++
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 469999999999999 45568899999999953 234469999999999999999997421 114689999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCCCCCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 2118 (2138)
.+++ +.+|+|.|.|.++...+....+|.|.+.+++.|
T Consensus 104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~sG 141 (141)
T 2d8k_A 104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141 (141)
T ss_dssp SSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCCCCC
T ss_pred CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCCCCC
Confidence 9975 689999999999998888999999998844443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-11 Score=161.31 Aligned_cols=510 Identities=12% Similarity=0.103 Sum_probs=339.4
Q ss_pred cHHHHHHhhccCCHHHHHH-HHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHH
Q 000124 217 GVDIIVGLLSSDNAAAQSN-AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~-A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk 295 (2138)
-+..+-..|.+++...+.. ..++++.+..+.+ -..+...+++++. +++..+|..+-..+.+++..+++..
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH-
Confidence 4666777788777655544 4566665553321 1335677888777 5677888888888888766433332
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000124 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2138)
Q Consensus 296 ~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l 375 (2138)
.-.+..+.+-+.++++. ++..|+.+|+++.. +..
T Consensus 85 ----~l~~n~l~kdL~~~n~~---------ir~~AL~~L~~i~~--~~~------------------------------- 118 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPL---------IRALAVRTMGCIRV--DKI------------------------------- 118 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHH---------HHHHHHHHHHTCCS--GGG-------------------------------
T ss_pred ----HHHHHHHHHHcCCCCHH---------HHHHHHHHHHcCCh--HHH-------------------------------
Confidence 12344555555555533 55667777766642 000
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHH
Q 000124 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2138)
Q Consensus 376 ~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~ 454 (2138)
...+.+.+..++.+.++. +|..|+.++..++.. ++.. .+.+.++.+..++.+.++.++..|+.
T Consensus 119 ------------~~~l~~~l~~~L~d~~~~-VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 119 ------------TEYLCEPLRKCLKDEDPY-VRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp ------------HHHHHHHHHHHSSCSCHH-HHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHH
Confidence 112345677888877654 999999999999753 3322 22456788999999999999999999
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHH
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre 534 (2138)
+|..++.++++........+.++.|+..+...++-.+...+.+|.+++..++... ...++.+..+|++.++.++.
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHH
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHH
Confidence 9999998755331111123456777777777788888888888888775332221 23466677778888999999
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc--CCCcch
Q 000124 535 VAAHVLWILCC----HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL--GDSPSS 608 (2138)
Q Consensus 535 ~Aa~aL~nLs~----~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~--~~d~~V 608 (2138)
.|++++.++.. +.+..+..+ ....+.|+.++ ++++++|+.+..+|..+......-..+.+..++. +++..+
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~I 334 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYV 334 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHH
Confidence 99999999863 223333321 34556777665 4789999999999999986522111111111111 334678
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL 688 (2138)
+..+++.+..+.... .+. ..++.|..++++.+.+.|..+++++.+++...+... ...++.|+.++
T Consensus 335 r~~al~~L~~l~~~~----nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll 399 (591)
T 2vgl_B 335 KLEKLDIMIRLASQA----NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHTCCSS----THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCChh----hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHH
Confidence 888887777654221 111 247778888888999999999999999997544322 34678999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcH
Q 000124 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2138)
Q Consensus 689 ~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L 767 (2138)
++..+.++..+..++.++....+. . ...++..|...+.+ ..++++..++|+|+..+..-... ...+
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~---~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~-----~~~l 466 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPN---K-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA-----DELL 466 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCS---S-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH-----HHHH
T ss_pred cccchHHHHHHHHHHHHHHHHCcc---h-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH-----HHHH
Confidence 999999999999999998763332 2 24578889888875 67889999999999887532211 2334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 768 SALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 768 ~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+.+++-+.+.++.+|..+..++.++....|.. ....+..++........+...+..|...++.+..
T Consensus 467 ~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~--------~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 467 ESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE--------TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST--------THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 44554445668999999999999999865421 0234455666553333455678888888777753
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=151.76 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=82.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.|| .+..|..||||++.+. ++..+||+|+++++||+|||+|.|.+-. .+.+..|+|+||++
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 58999999999999 4556889999999993 3344579999999999999999998522 22578999999999
Q ss_pred CCCC---CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG---KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~---k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+| .+.+|++.|.|.++..++ ...+|+|
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9998 688999999999998877 7888887
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=152.20 Aligned_cols=108 Identities=14% Similarity=0.242 Sum_probs=91.0
Q ss_pred hcCCceEEEEEecccccc-cccCCCCceEEEEecC----CCCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEe
Q 000124 2006 HCLPGCLTVTIKRGNNLK-QTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICK 2078 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~ 2078 (2138)
+.-+|.|.|+|++|.||. +..|..||||++.+.. ...+||+|+++++||+|||+|.|. +... +....|.|+||
T Consensus 16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 345899999999999994 4558899999999943 234479999999999999999998 5422 25679999999
Q ss_pred ecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2079 SKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2079 ~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+++.+|+ +.+|+|.|.|.++...+....+|.|.+.
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 9999975 5799999999999888889999999876
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-14 Score=149.69 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=89.7
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecC--C-CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCCC
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGN--G-PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTF 2083 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~ 2083 (2138)
-.|.|.|+|++|.+ .+..|..||||++.+.. + ..+||+|+++++||+|||+|.|.+..+-+ +..|+|+||+++.|
T Consensus 24 ~~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~ 102 (138)
T 1wfm_A 24 QKAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102 (138)
T ss_dssp TTTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred CCCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence 47899999999997 46669999999999943 2 23469999999999999999999764433 57899999999999
Q ss_pred CC-cccceEEEEecceeecceecceeecCCC
Q 000124 2084 GK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++ +.+|+|.|.|.++-.......+|.|.+.
T Consensus 103 ~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 65 6899999999999777788899999887
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=157.97 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=97.2
Q ss_pred hhcCCceEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2005 LHCLPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2005 ~~~~~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
..|..|.|.|+|++|.||. +..++.||||++.+ .|+.+||+|+++++||+|||+|+|.++ | .+.|+|+|||++.
T Consensus 31 ~~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~-~~~~~kT~v~~~tlnP~Wne~f~f~v~--~-~~~L~~~V~D~d~ 106 (173)
T 2nq3_A 31 SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-DGQSKKTEKCNNTNSPKWKQPLTVIVT--P-VSKLHFRVWSHQT 106 (173)
T ss_dssp CCSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEE-TTEEEECCCCSSCSSCEEEEEEEEEEC--T-TCEEEEEEEECCS
T ss_pred ccCCceEEEEEEEEeECCCCcccCCCCCeEEEEEE-CCEEeEccccCCCCCCeECCEEEEEeC--C-CCEEEEEEEECCC
Confidence 4578899999999999996 33466999999999 557778999999999999999999985 3 8999999999999
Q ss_pred CCCc-ccceEEEEecceeec--ce---ecceeecCCCCCCCCCccceEEEEEec
Q 000124 2083 FGKS-TLGKVTIQIDKVVTE--GV---YSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2083 ~~k~-~~g~~~~~~~~v~~~--~~---~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|++ .+|++.|.|.++... |. +..+|.|.....+....+.|.+.|.+-
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 160 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeee
Confidence 9765 899999999998752 22 244788887622222356666777664
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=153.26 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=90.7
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||.|||+|.|.+..+- .+..|+|+||+++.
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence 579999999999999 45568899999999953 34457999999999999999999774321 36899999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++ .+.+|++.|.|.++.....+..+|.|.+.
T Consensus 120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 96 56899999999999887788999999875
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-14 Score=150.40 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=90.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+.. +..+||+|+++++||.|||+|.|.+..+- .+..|+|+||+++.
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence 468999999999999 45678999999999943 33456999999999999999999876432 45899999999999
Q ss_pred CCC-cccceEEEEecceeecceecceeecCC
Q 000124 2083 FGK-STLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
+++ +.+|+|.|.|.++-..+....+|.|.+
T Consensus 112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 975 679999999999988888999999875
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=152.52 Aligned_cols=254 Identities=11% Similarity=0.090 Sum_probs=201.7
Q ss_pred hhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhH
Q 000124 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550 (2138)
Q Consensus 471 ~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~ 550 (2138)
...+.++.|+..|+++++.+|..|+.+|++++. .+.++.|+.+|+++++.+|..++++|+.+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999873 236788999999999999999999999997532222
Q ss_pred HHHHHHcCCcchhh-hccccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000124 551 RACVESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 551 r~~I~e~GaI~aLv-~LLkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
.. .++.|. .+++++++.++..++++|+++.... ....++.|++++.+.++.++..++.+|+.+.
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------ 156 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------ 156 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------
Confidence 11 122333 2457788999999999999997432 3467899999999999999999988887642
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..+.++.|+.+++++++.+|..|+++|.++.... ..+++.|+.++++.++.+|..|+++|+++
T Consensus 157 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 157 --------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 2347899999999999999999999999986322 24678899999999999999999999998
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNA 785 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~A 785 (2138)
.. ..+++.|+.++.+++ ++..|+.+|+.+.. +..++.|..++.+ .++++...+
T Consensus 220 ~~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 220 KD--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TC--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred CC--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 62 237889999998754 88899999998753 4688999998865 467788777
Q ss_pred HHHHH
Q 000124 786 SRALH 790 (2138)
Q Consensus 786 a~AL~ 790 (2138)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-14 Score=150.21 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=88.8
Q ss_pred CCceEEEEEecccccccc---------cCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCC-CCCeEEE
Q 000124 2008 LPGCLTVTIKRGNNLKQT---------MGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHI 2075 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~ 2075 (2138)
-.|.|.|+|++|.||..+ .|..||||++.+..+ ..+||+|+++++||+|||+|.|.+..+- ....|+|
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~ 103 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL 103 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence 468999999999999653 368999999999643 3457999999999999999999875321 2468999
Q ss_pred EEeecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2076 ICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2076 ~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+||+++.+++ +.+|++.|.|.++...+....+|.|.+.
T Consensus 104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp EEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred EEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 9999999976 5799999999999887777788888876
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-14 Score=153.00 Aligned_cols=109 Identities=21% Similarity=0.387 Sum_probs=92.1
Q ss_pred hhcCCceEEEEEeccccc--ccccCCCCceEEEEecCCC-------------CccccccccCCCCCccccceee-ecC-C
Q 000124 2005 LHCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-------------PRQTKVVSHSISPEWKEGFTWA-FDV-P 2067 (2138)
Q Consensus 2005 ~~~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~t~~~~~~~~p~w~~~f~~~-~~~-~ 2067 (2138)
|....|.|.|+|++|.|| .+..|..||||++.++.++ .+||+|+++++||.|||+|.|. +.. -
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~ 92 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQ 92 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHH
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHH
Confidence 334489999999999999 5566889999999996553 3579999999999999999995 431 1
Q ss_pred CCCCeEEEEEeecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2068 PKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2068 p~~~~l~~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+..+.|+|+||+++.+|+ +.+|+|.|.|.++...+....+|+|.+.
T Consensus 93 l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 93 LMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp HTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred ccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 257899999999999974 6899999999999888888999999876
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=149.74 Aligned_cols=254 Identities=15% Similarity=0.069 Sum_probs=199.2
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--h
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--S 591 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--~ 591 (2138)
..+.++.|+..|.++++.+|..|+++|+++.. .++++.|+.+++++++.++..++++|+++..... .
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45789999999999999999999999999963 3467888999999999999999999999864322 1
Q ss_pred hhHHHHH-HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 592 ATINQLL-ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 592 ~aI~~Li-~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
..++.|. .++.+.++.++..+.++|+.+...... .....++.|+.+++++++.+|..|+.+|.++..
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2233333 245788889999999999987532110 112358899999999999999999999998764
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN 750 (2138)
.++++.|+.++++.++.+|..|+++|+++.... ..+++.|+.++++++..++..|+.+|++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999999985311 2367899999999999999999999998
Q ss_pred hhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHH
Q 000124 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVA 830 (2138)
Q Consensus 751 La~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~ 830 (2138)
+. .+..++.|+.++.+++ +|..|+++|.++... ..++.|..++...+ +.....
T Consensus 219 ~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------------~~~~~L~~~l~~~~-~~~~~~ 271 (280)
T 1oyz_A 219 RK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------------TLLPVLDTMLYKFD-DNEIIT 271 (280)
T ss_dssp TT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------GGHHHHHHHHTTSS-CCHHHH
T ss_pred hC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------hhhHHHHHHHhcCC-CcHHHH
Confidence 86 4568999999998755 999999999988752 36788888886443 334455
Q ss_pred HHHHHH
Q 000124 831 DALEVV 836 (2138)
Q Consensus 831 ~AL~AL 836 (2138)
.+..+|
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=155.04 Aligned_cols=104 Identities=16% Similarity=0.353 Sum_probs=91.5
Q ss_pred CCceEEEEEecccccccc---cCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEe-e
Q 000124 2008 LPGCLTVTIKRGNNLKQT---MGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICK-S 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~-~ 2079 (2138)
-.|.|.|+|++|.||..+ .|..||||++.+..+. .+||+|+++++||+|||+|.|.+. |..+.|+|+|| +
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~L~~~V~~d 105 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES--PQGKVLQVIVWGD 105 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC--CTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec--CCCCEEEEEEEEc
Confidence 479999999999999532 4899999999996543 446999999999999999999874 46899999999 9
Q ss_pred cCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.+++ +.+|+|.|.|.++.....+..+|.|.+.
T Consensus 106 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 106 YGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 999976 7999999999999988889999999887
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-14 Score=148.94 Aligned_cols=104 Identities=20% Similarity=0.387 Sum_probs=88.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..| .||||++.+..+ ..+||+|+++++||+|||+|.|.+..+- .+..|+|+||+++
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence 68999999999999 45567 999999999532 3446999999999999999999873211 2459999999999
Q ss_pred CCCC---cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK---STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k---~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|++.|.|.++........+|.|.+.
T Consensus 102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 9973 5899999999999888889999999987
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-14 Score=151.47 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=91.0
Q ss_pred CceEEEEEecccccc--c-ccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--Q-TMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~-~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|.|+|++|.||. + ..|..||||++.+..+. .+||+|+++++||+|||+|.|.+..+.. +..|+|+||++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 489999999999995 3 45899999999996433 3469999999999999999998765433 56799999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCCCCCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 2118 (2138)
+.+|+ +.+|+|.|.|.++...+....+|.|.+.....|
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~~ 140 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAES 140 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-----
T ss_pred CCCcCCcEEEEEEEEcccccccCCccceEECcCcccccc
Confidence 99975 689999999999998889999999998744444
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=145.93 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=99.2
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCC-CCeEEEEEeecCCCCC-cc
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~~k-~~ 2087 (2138)
.|+|+|+++.||. |+.|||++++| ||.+|||||++ .+.||+|||.|+|-+--|+. ++.|+|.|+|.++||+ .-
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~F-Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl 97 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL 97 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEE-TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEE-eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence 4899999999999 47899999999 99999999998 59999999999999997654 6899999999999855 56
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|.+.|.|.+|+.+|+..=.-+|.|.+++.-. .++.+++...+
T Consensus 98 IG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~-a~I~l~l~Y~p 140 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK-TSLSMEVRYQA 140 (144)
T ss_dssp EEEEEEESHHHHHHSEEEEEEEEECTTSCEEE-EEEEEEEEEEE
T ss_pred EEEEEEEhHHhccCCeEEEeecccCCCCCccc-cEEEEEEEecC
Confidence 89999999999999999999999999444322 45555555544
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=143.80 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=86.0
Q ss_pred CCceEEEEEeccccc--cccc-CCCCceEEEEecCC--CCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+.+ |..||||++.+..+ ..+||+|+++++||+|||+|.|. +... ..+..|+|+||++
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 99 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence 458899999999999 4544 78999999999642 34469999999999999999994 4322 2457999999999
Q ss_pred CCCCC-cccceEEEEecceeec-ceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTE-GVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~-~~~~~~~~l~~~ 2113 (2138)
+.+++ +.+|+|.|.|.++... |...-+|.|.+.
T Consensus 100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 99965 5899999999999774 555556888776
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-14 Score=152.24 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=86.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC--C---CccccccccCCCCCccccceeeecCCC-CCCeEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--P---PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~---~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~ 2079 (2138)
-.|.|.|+|++|.|| ++..|..||||++.+... . ++||||+++|+||+|||+|.|.+...- ....|+|+||+
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d 120 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence 358999999999999 556789999999999542 1 457999999999999999999875431 35789999999
Q ss_pred cCCCCC-cccceEEEEecceee-cceecceeecCC
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVT-EGVYSGLFNLNH 2112 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~-~~~~~~~~~l~~ 2112 (2138)
++.+|+ +.+|.+.|.|.++.. ......+|.|.+
T Consensus 121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155 (155)
T ss_dssp ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred CCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence 999965 679999999999853 456677888753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=149.21 Aligned_cols=104 Identities=10% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-+|.|.|+|++|.|| .+..|..||||++.+..+. ++||+|+++++||.|||+|.|.+..+-+ +..|+|+||++
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~ 107 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 107 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence 579999999999999 4556889999999995443 3479999999999999999999876543 36899999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.++ .+.+|+|.|.+.. ....+..+|.|.+.
T Consensus 108 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 139 (153)
T 1w15_A 108 ERGSRNEVIGRLVLGATA--EGSGGGHWKEICDF 139 (153)
T ss_dssp CTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence 9996 5689999999998 56678889999886
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-09 Score=141.88 Aligned_cols=436 Identities=14% Similarity=0.096 Sum_probs=297.8
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
.|.+-+.++++ .+|..|+++|+++.. ++.. ...++.+..++.+.++.+++.|+.++.++....++.. .
T Consensus 111 ~l~kDL~~~n~-~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~ 178 (618)
T 1w63_A 111 CIKNDLNHSTQ-FVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----E 178 (618)
T ss_dssp HHHHHHSCSSS-HHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----G
T ss_pred HHHHhcCCCCH-hHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----H
Confidence 34444455444 488889999998863 2221 2446778888999999999999999999988765432 2
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh---------------CCHHHHHHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAH 538 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks---------------~d~~vre~Aa~ 538 (2138)
+.++.+..++.+.++.++..|+.+|+.++..+++....+ ...+|.++.+|++ .++-.+.....
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 567778889999999999999999999987443321122 3578888888864 37888888999
Q ss_pred HHHHHhcCChhHHHHHHHcCCcchhhhccc------cCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHH
Q 000124 539 VLWILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKA 610 (2138)
Q Consensus 539 aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk------S~~~evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~ 610 (2138)
+|+.++..+.... ....+.|..+++ +.+..+...|++++.++...+. ..+++.|..++.+.+++++.
T Consensus 257 ~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 257 LLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 9999987543322 223333434332 2345789999999988753321 24678899999999999999
Q ss_pred HHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc
Q 000124 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 611 ~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d 690 (2138)
.+..+|+.+... .++.++ .....++..+++++..+|..|..+|..++. +.+... +++.|...+.+
T Consensus 332 ~aL~~L~~i~~~--~p~~~~------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~-----iv~eL~~~l~~ 396 (618)
T 1w63_A 332 VALTSLLKTVQT--DHNAVQ------RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRG-----MMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHHHHHH--HHHHHG------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CHHHHH------HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHH-----HHHHHHHHHHh
Confidence 999999988753 222222 246678888999999999999999999986 233222 45788889999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHH
Q 000124 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 691 gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~ 769 (2138)
.+.++|..+..++++++...+. ... ..++.|++++......++.+++..+..+.. +|+.+.. +++.
T Consensus 397 ~d~e~r~~~v~~I~~la~k~~~--~~~------~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~ 463 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAEKYAP--SKR------WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQR 463 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCC--CHH------HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCc--cHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHH
Confidence 9999999999999999874333 222 257888999988776777778888887764 5665543 3556
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHHhhhcCCCc---hhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000124 770 LTRVLAE--GTSEGKKNASRALHQLLKHFPVG---DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2138)
Q Consensus 770 LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~---d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~ 844 (2138)
|..++.+ .++.+.+.++|+|+..+..-..+ +.-............|..++....++..++..++.+++.+....+
T Consensus 464 L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 464 LYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc
Confidence 7777765 34455567999999998631100 000000111234455555554334566778888888888774321
Q ss_pred CCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHh
Q 000124 845 GLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2138)
Q Consensus 845 ~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L 888 (2138)
.. .+.-...|..+..+.++++|++|.+.+.-+
T Consensus 544 ~~------------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 544 CT------------VNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp SC------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ch------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 10 111123345556677888999999976654
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-13 Score=149.64 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=87.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+ ..+||+|+++++||.|||+|.|.+..+- .+..|+|+||++
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 114 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 114 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence 468999999999999 455688999999999653 3447999999999999999999985432 367999999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|+ +.+|+|.|.|..+ ...+..+|.|.+.
T Consensus 115 d~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~ 146 (166)
T 2cm5_A 115 DIGKSNDYIGGCQLGISAK--GERLKHWYECLKN 146 (166)
T ss_dssp CSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHC
T ss_pred CCCCCCcEEEeEEEecccC--CchhHHHHHHHhC
Confidence 99975 6899999999984 3356778888876
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-13 Score=145.45 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=82.8
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~ 2079 (2138)
-+|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|. +... +.+..|+|+||+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 106 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD 106 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence 578999999999999 455688999999999653 34469999999999999999987 4322 124799999999
Q ss_pred cCCCCC-cccceEEEEecceeecceecceeec
Q 000124 2080 KNTFGK-STLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2080 ~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
++.+|+ +.+|++.|.|.++...+...-++.|
T Consensus 107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred CCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 999986 6899999999998765543333433
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=155.23 Aligned_cols=125 Identities=16% Similarity=0.253 Sum_probs=103.4
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+ ..++|+|+++++||.|||+|.|.+..+- .++.|+|+||+++.
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~ 96 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR 96 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence 468999999999999 455689999999999643 3446999999999999999999875432 46899999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCCCC-CCCCccceEEEEEecCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNN-KDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~w~~~ 2132 (2138)
++ .+.+|+|.|+|.++...+.+..+|.|.+... +.+..+.+.+.+.|.+.
T Consensus 97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred CCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence 96 5889999999999999888999999987622 23345667788888754
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-09 Score=140.95 Aligned_cols=496 Identities=14% Similarity=0.102 Sum_probs=266.4
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 125 G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
.+....++++.+++.+.++-+.-.+..++.. ++. .+. -++..|.+-+.+++ +.++..|+++|+++...
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~----~~e---~~~--l~in~l~kDL~~~n---~~vr~lAL~~L~~i~~~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE----RQD---VHL--LMTNCIKNDLNHST---QFVQGLALCTLGCMGSS 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC----CHH---HHH--HHHHHHHHHHSCSS---SHHHHHHHHHHHHHCCH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC----CcH---HHH--HHHHHHHHhcCCCC---HhHHHHHHHHHHhcCCH
Confidence 4667778888888999999888888888852 222 111 15677888787655 56899999999999741
Q ss_pred CCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHH
Q 000124 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2138)
Q Consensus 205 ~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~ 284 (2138)
.+. ...++.+..+|.+.++.+|..|+.++.+++..+++... +.++.+..++. +.+..++..|..+|.
T Consensus 138 ------~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~-D~d~~V~~~Al~~L~ 204 (618)
T 1w63_A 138 ------EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN-EKNHGVLHTSVVLLT 204 (618)
T ss_dssp ------HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT-CCCHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC-CCCHhHHHHHHHHHH
Confidence 222 23478888999999999999999999999976654322 56777777776 678899999999999
Q ss_pred HHhhcCHHHHHHHHhcCCHHHHHHhhcCC-----chhhhh-hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCch
Q 000124 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAP-----SKECMQ-GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLA 358 (2138)
Q Consensus 285 nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~-----s~e~mq-~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss 358 (2138)
.+...+++..+.+. ..++.++..+.+- .+++.- +....-.|..++.+|..++...+..
T Consensus 205 ~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-------------- 268 (618)
T 1w63_A 205 EMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-------------- 268 (618)
T ss_dssp HHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH--------------
T ss_pred HHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH--------------
Confidence 99876554433333 4567777655430 011000 0001113333444443332110000
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-----ChhHHHHHHHHHHHHhhcCchhHHHHhhhch
Q 000124 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-----DNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2138)
Q Consensus 359 ~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~-----~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~g 433 (2138)
...+.++|..++... ....+...++.++..+..++... ..+
T Consensus 269 -----------------------------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a 314 (618)
T 1w63_A 269 -----------------------------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-----VLA 314 (618)
T ss_dssp -----------------------------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHH
T ss_pred -----------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-----HHH
Confidence 001122333332110 11124445555555443222111 123
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
+..|..++.+.+++++..+..+|..+....+.. + ....+.++.++.+++..+|..|+.+|..++.. .+-..
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~---~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~-- 385 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNA---V--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRG-- 385 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH---H--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHH--
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH---H--HHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHH--
Confidence 444555555555555555555555555432211 1 12334455555555555555555555555542 11111
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhh
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~a 593 (2138)
.++.|...+.+.+.++|..+...++.++..... .....
T Consensus 386 ---iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~---------------------------------------~~~~~ 423 (618)
T 1w63_A 386 ---MMKELLYFLDSCEPEFKADCASGIFLAAEKYAP---------------------------------------SKRWH 423 (618)
T ss_dssp ---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC---------------------------------------CHHHH
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc---------------------------------------cHHHH
Confidence 123444444445555555555555555442110 01123
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC--CCHHHHHHHHHHHHHHhhcChhh
Q 000124 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 594 I~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks--~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
++.++++++.....+...+..++..+....+ +. ...++..|+.++.+ ..+.....++|+|+..+..-...
T Consensus 424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p--~l------~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~ 495 (618)
T 1w63_A 424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSV--EM------HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSG 495 (618)
T ss_dssp HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC--ST------HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhcCh--hH------HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccc
Confidence 3444444444333333333333333322111 10 01135566666654 23344446888888876421000
Q ss_pred -h-----hhhhhCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 672 -C-----GSLATDEIVNPCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 672 -r-----~~Ive~GaV~~Lv~LL~--dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
. ..+....+++.|..+++ ..++.+|..+..|+.++....+. .+.. +...|-....+.+.++|..
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~-----l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNR-----IKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHH-----HHHHHHHHTTCSCHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHH-----HHHHHHHhcCCCCHHHHHH
Confidence 0 00011123455556664 56889999999999999875443 1211 1122334456788999999
Q ss_pred HHHHHHHhhCCchHHHHHH
Q 000124 744 AVAALANLLSDPDIAAEVL 762 (2138)
Q Consensus 744 Al~ALaNLa~~~e~r~~Ii 762 (2138)
|...+.-+..++..+..+.
T Consensus 568 A~~y~~ll~~~~~~~~~vl 586 (618)
T 1w63_A 568 AVEYNALFKKYDHMRSALL 586 (618)
T ss_dssp HHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHh
Confidence 9999888776665554443
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-13 Score=139.41 Aligned_cols=86 Identities=15% Similarity=0.269 Sum_probs=73.7
Q ss_pred ceEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCcc
Q 000124 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~ 2087 (2138)
|.|.|+|++|.++.. .|..||||++. +..+||++++ +++||+|||+|.|.+.+ ....|+|+|||++ + ..+.
T Consensus 5 ~~L~V~V~~A~~l~~-~g~~DPYv~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~dd~ 77 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGA-QEKFNTYVTLK---VQNVKSTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIWDTM 77 (131)
T ss_dssp EEEEEEEEEEECSSC-GGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEEECC--CSSEEEEEEEECC-SSCEEE
T ss_pred eEEEEEEEEeECCCC-CCCcCeEEEEE---ecCEEEeEecCCCCCceECCEEEEEEeC--CCCeEEEEEEECC-CCCCCe
Confidence 789999999999854 59999999999 4455666665 79999999999999875 3668999999999 6 4578
Q ss_pred cceEEEEecceeecc
Q 000124 2088 LGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~ 2102 (2138)
+|++.|.|.++...+
T Consensus 78 iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 78 VGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhhhcC
Confidence 999999999988766
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=144.45 Aligned_cols=103 Identities=15% Similarity=0.284 Sum_probs=86.5
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|.+..+.+ +..|+|+||+++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 48999999999999 456688999999999543 24469999999999999999998765432 468999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+++ ....+..+|.|.+.
T Consensus 95 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 125 (138)
T 3n5a_A 95 KLSRNDVIGKIYLSWKS--GPGEVKHWKDMIAR 125 (138)
T ss_dssp SSSCCEEEEEEEESSSS--CHHHHHHHHHHHHS
T ss_pred CCCCCcEEEEEEEcccc--CChHHHHHHHHHhC
Confidence 9975 589999999998 45667888898877
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=168.64 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=86.3
Q ss_pred eEEEEEecccccc-cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2011 CLTVTIKRGNNLK-QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
.|.|+|++|.||. +..|++||||++.+ .|.+.||||+++|+||+|||+|.|.+.+.+.++.|.|+|||+|.+++ |.|
T Consensus 395 ~L~V~V~~A~~L~~D~~g~sDPYV~v~l-~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~L 473 (540)
T 3nsj_A 395 HLVVSNFRAEHLWGDYTTATDAYLKVFF-GGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473 (540)
T ss_dssp EEEEEEEEEESCCCSSCSCCCEEEEEEE-TTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEE
T ss_pred EEEEEEEEccCCCcccCCCcCeEEEEEE-CCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEE
Confidence 7999999999994 56789999999999 46667899999999999999999987655579999999999999988 899
Q ss_pred ceEEEEecceeecceecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|.|.++|. .|....++.|.+.
T Consensus 474 G~~~~~L~----~g~~~~~~~l~~G 494 (540)
T 3nsj_A 474 GSCDRSPH----SGFHEVTCELNHG 494 (540)
T ss_dssp EEEEECCC----SEEEEEEEECSSS
T ss_pred EEEEEEee----CCcEEEEEEcCCe
Confidence 99999988 5887888886543
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-13 Score=143.92 Aligned_cols=90 Identities=18% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.|| .+..|..||||++.++.+. .+||+|+++++||.|||+|.|.+..+-+ +..|+|+||++
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 102 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence 478999999999999 5566889999999996432 4479999999999999999998754322 46899999999
Q ss_pred CCCC-CcccceEEEEecc
Q 000124 2081 NTFG-KSTLGKVTIQIDK 2097 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~ 2097 (2138)
+.+| .+.+|++.|.+..
T Consensus 103 d~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 103 DKIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp CSSSCCEEEEEEEEETTC
T ss_pred CCCCCCceEEEEEECCCC
Confidence 9997 5689999999985
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-09 Score=133.92 Aligned_cols=401 Identities=15% Similarity=0.126 Sum_probs=264.1
Q ss_pred HHHHHHcCC-CChhHHHHHHHHHHHHhhcCc-h-------------hH----HH-HhhhchHHHHHHHHccCCHHHHHHH
Q 000124 393 DILVMLLKP-HDNKLVQERVLEAMASLYGNI-F-------------LS----QW-VSHAEAKKVLIGLITMATADVREYL 452 (2138)
Q Consensus 393 ~~LV~LL~s-~~~e~vr~~Aa~AL~~L~~n~-~-------------~~----~~-L~e~~gI~~LV~LL~sss~evq~~A 452 (2138)
+.|+..|+. .++.++-..++.+|.++.... + +. .. +.+.+++..|+.++...+..++.++
T Consensus 63 ~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~a 142 (651)
T 3grl_A 63 EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPG 142 (651)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHH
Confidence 555555543 334445566777787764321 1 11 12 2345789999999999999999999
Q ss_pred HHHHHHhhhccch-hhHHhh-hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--
Q 000124 453 ILSLTKLCRREVG-IWEAIG-KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-- 528 (2138)
Q Consensus 453 a~aL~~Ls~~s~~-~~~~I~-e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-- 528 (2138)
+..|..++.+.+. .+..|. ..+||+.|+.+|++..+.+|..++..|.+|+.++.+.+..+.-+|+++.|+.+++..
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 9999999988776 777777 459999999999999999999999999999998888888888889999999999865
Q ss_pred --CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCc
Q 000124 529 --SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSP 606 (2138)
Q Consensus 529 --d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~ 606 (2138)
...+...|..+|.||..++..++..+.+.|.++.|..+++.+.... .++..-+.|+. ..-.++++|-..+.
T Consensus 223 ~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~-~W~~Qk~~N~~------~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 223 SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS-GWSAQKVTNLH------LMLQLVRVLVSPNN 295 (651)
T ss_dssp GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSS-CCCHHHHHHHH------HHHHHHHHHTCTTS
T ss_pred CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccc-ccHHHHHHHHH------HHHHHHHHHhCCCC
Confidence 3478899999999999998889999999999999999987643210 00111122221 11223444443322
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCC-----
Q 000124 607 SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDE----- 679 (2138)
Q Consensus 607 ~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~G----- 679 (2138)
..+ .....+..+.+.|++..|+.++.++ ...++..|..+++.+..+++.+...+.+..
T Consensus 296 ~~~---------------~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~ 360 (651)
T 3grl_A 296 PPG---------------ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP 360 (651)
T ss_dssp CHH---------------HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred CCC---------------CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence 211 0112345567889999999998776 688999999999999999999998887643
Q ss_pred ----CHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhc----------CChhh---HHhhhhcCCHHHH
Q 000124 680 ----IVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAE----------GDVKP---LIKLAKTSSIDAA 741 (2138)
Q Consensus 680 ----aV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~----------G~V~~---Lv~LL~s~s~~Vr 741 (2138)
.+..|+.++.+ ....+|.+|+.++......++. .+..+... ..+.+ |..-+-+.++-..
T Consensus 361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~---~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~ 437 (651)
T 3grl_A 361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK---GQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSN 437 (651)
T ss_dssp CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH---HHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHH
T ss_pred CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH---HHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHH
Confidence 23334444544 3568999999999988864332 12222211 11111 3333444454333
Q ss_pred HHHHHHHHHhhCCc-hHHHHHHh-----------cCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCCCchhhhhhhhh
Q 000124 742 ETAVAALANLLSDP-DIAAEVLL-----------EDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2138)
Q Consensus 742 ~eAl~ALaNLa~~~-e~r~~Ii~-----------~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~ 808 (2138)
--|+.+|..+..+. +.+..+.+ .-.++.++.++..+ +++++-.=...|+--..++| +.+.+-...
T Consensus 438 wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV~dFL~~ 515 (651)
T 3grl_A 438 WCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP--IAVTHFLHN 515 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh--HHHHHHHcC
Confidence 34777788877644 44444332 12366777766543 45544333333333333332 334333334
Q ss_pred hhhHHHHHHhhc
Q 000124 809 RFVVLTLVDSLN 820 (2138)
Q Consensus 809 ~gav~~LV~LL~ 820 (2138)
...+..|+..+.
T Consensus 516 ~s~l~~L~~~i~ 527 (651)
T 3grl_A 516 SANVPFLTGQIA 527 (651)
T ss_dssp TTHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 556777887764
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-12 Score=163.07 Aligned_cols=119 Identities=16% Similarity=0.314 Sum_probs=98.2
Q ss_pred hcCCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2006 HCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
.+-.|.|.|+|++|.|| .+..|.+||||++.+ .+..++|+|+++++||.|||+|.|.+..+ .++.|.|+|||++.|
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~-~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISM-GSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQF 460 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE-TTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCSS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEE-CCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCC
Confidence 35578999999999999 566799999999999 56667899999999999999999999755 778999999999999
Q ss_pred CC-cccceEEEEecceeecce----ecceeecCCCCCCCCCccceEEEEEe
Q 000124 2084 GK-STLGKVTIQIDKVVTEGV----YSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
|+ +.+|+|.|+|.++...+. +..+|.|.+. +.|.+. +.++|++
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~--~~G~i~-l~~~l~l 508 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV--PTGEVW-VRFDLQL 508 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS--SSCEEE-EEEEEEE
T ss_pred CCCCceEEEEEEHHHhccccCCCCceeeeecCCCC--CCceEE-EEEEEEE
Confidence 75 679999999999987655 7778888877 556544 4455554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-11 Score=132.16 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=161.5
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
.+.++.|+.+++++++.++..++.+|+.+. +...++.|++++.+.++.++..+.++|+.+. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------------~~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DE 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------------CG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CH
Confidence 567889999999999999999999998875 3578999999999999999999999988752 23
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+.++.|+.+++++++.+|..|+.+|.++.. .+.++.|++++.+.++.+|..|+.+|+++.. +
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----- 142 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E----- 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H-----
Confidence 468999999999999999999999999864 4578999999999999999999999999953 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..++.|..+++++++.|+..|+.+|+.+.. +.+++.|..++.++++.+|..|.++|.++....
T Consensus 143 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 -------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 368899999999999999999999998852 457888999999999999999999999988753
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=140.81 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=74.9
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcc
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKST 2087 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~ 2087 (2138)
-|.|.|+|++|.++. ..|..||||++. +..+||++++ ++.||+|||+|.|.+.++ ...|+|+|||++..+.+.
T Consensus 13 ~~~L~V~V~~A~~l~-~~g~~DPYV~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d~~~dd~ 86 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTM 86 (167)
T ss_dssp CCEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECCSSCCEE
T ss_pred eEEEEEEEEEEECCC-CCCCCCeEEEEE---ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECCCCCCce
Confidence 368999999999984 469999999999 4456777776 799999999999999853 668999999999335679
Q ss_pred cceEEEEecceeecc
Q 000124 2088 LGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~ 2102 (2138)
+|++.|.|.++...+
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999988766
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=130.59 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=162.4
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+.++.|+++++++++.+|..++..|+.+.. ..+++.|+++|+++++.+|..++.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 35678999999999999999999999998864 2578999999999999999999999999863
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++++.|+.++++.++.++..++++|+++. +.+.++.|++++.+.++.++..+.++|+.+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 140 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 140 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------
Confidence 457788899999999999999999999885 4568999999999999999999999998752
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
....++.|..+++++++.+|..|+.+|.++.. ..+++.|.++++++++.+|..|..+|.++..
T Consensus 141 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 141 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 23468999999999999999999999999864 4567889999999999999999999999976
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=129.25 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=163.4
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+..+.++++++++++.+|..|+.+|+.+.. .+.++.|+++|+++++.+|..++.+|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45678999999999999999999999998864 2468999999999999999999999999864
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++++.|+.++.+.++.++..++++|+++. +.+.++.|++++.+.++.++..++++|+.+.
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 135 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 135 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 357888999999999999999999999885 4568999999999999999999999998762
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
..+.++.|+.+++++++.+|..|+.+|.++.. ..+++.|..++++.++.+|..|..+|.++..
T Consensus 136 ---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 136 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 23468999999999999999999999999854 3467889999999999999999999998853
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-10 Score=126.78 Aligned_cols=185 Identities=23% Similarity=0.276 Sum_probs=160.3
Q ss_pred CCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc
Q 000124 558 GAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G 637 (2138)
+..+.++++++++++.++..|+.+|+.+. +...++.|++++.+.++.++..+.++|+.+. ..+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~~ 76 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DER 76 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CHH
Confidence 45677889999999999999999999875 3478999999999999999999988888652 234
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
.++.|+.+++++++.+|..|+.+|.++.. .+.++.|++++.+.++.+|..|+++|+++..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 136 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 136 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68999999999999999999999999864 3578899999999999999999999999853
Q ss_pred hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.+.++.|+.++++++..++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 237889999999999999999999999884 24578889999999999999999999988753
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=146.03 Aligned_cols=124 Identities=16% Similarity=0.261 Sum_probs=94.9
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEec--CCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG--NGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+. ++..+||+|+++++||.|||+|.|.+..+- .+..|+|+|||++.
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 468999999999999 5667899999999994 334557999999999999999999874321 24699999999999
Q ss_pred CC-CcccceEEEE-ecceee-cceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2083 FG-KSTLGKVTIQ-IDKVVT-EGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~-~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|+ .+.+|+|.|. +.+... .+....+|.|.+...+....+.+.+.+.+.+
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence 96 5789999995 444443 3345668889876444444566667776654
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-09 Score=130.46 Aligned_cols=378 Identities=14% Similarity=0.069 Sum_probs=254.7
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCC---------
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHS--------- 547 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~s--------- 547 (2138)
++.-+.+++..+|..|-..|.++...+ ..+.+..|..++.+. ++.+|..|+-.|.++....
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 444455778889999999988866410 123556777877765 6899999999999986432
Q ss_pred -------hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c---hhhHHHHHHHhcCC--CcchHHHHH
Q 000124 548 -------EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D---SATINQLLALLLGD--SPSSKAHVI 613 (2138)
Q Consensus 548 -------d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e---~~aI~~Li~LL~~~--d~~V~~~A~ 613 (2138)
++.+.. .-..|+..+.+.++.+ ..++.+++.++... + .+.++.|++.+.++ ++.++..+.
T Consensus 78 ~~~~~l~~~~~~~-----ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 78 QRWLAIDANARRE-----VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHTSCHHHHHH-----HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhhhcCCHHHHHH-----HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 111111 1234667777778888 89999999998763 1 46789999999988 888899999
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhh-hhhhCCCHHHHHHHhcc
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICG-SLATDEIVNPCMRLLTS 690 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~-~Ive~GaV~~Lv~LL~d 690 (2138)
.+++.+....... .... .....++.++..+++. ++++|..|+.++.++...-.+... .....-.++.+...+.+
T Consensus 152 ~~l~~l~~~~~~~-~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 152 EAIGYICQDIDPE-QLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHSCGG-GTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCch-hhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999887532111 1111 1123578888888887 799999999999997643221110 11111245666677788
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHH----------
Q 000124 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE---------- 760 (2138)
Q Consensus 691 gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~---------- 760 (2138)
.++.+|..++.+|..+....+. ..+.. ...++++.++..+++.+++++..|+..+.+++........
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 8999999999999999863322 11111 1115667777788889999999999999888753210000
Q ss_pred --------HH---hcCcHHHHHHHHhC-------CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccC
Q 000124 761 --------VL---LEDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2138)
Q Consensus 761 --------Ii---~~g~L~~LV~LL~~-------~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~ 822 (2138)
+. -...+|.+.+.+.+ ++..+|..|+.+|..++...+ +.+. ...++.+...+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-----~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-----PHVLPFIKEHIKNP 378 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-----HHHHHHHHHHTTCS
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-----HHHHHHHHHHhcCC
Confidence 11 13356666666643 234789999999999998653 2111 34566677777654
Q ss_pred CCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 823 DMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 823 ~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
+ ...+..|+.+++.++..... ..+. ...+..++.++.++.++++.+|..|..+|.+++...
T Consensus 379 ~--~~~r~aal~~l~~l~~~~~~-~~~~------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 379 D--WRYRDAAVMAFGCILEGPEP-SQLK------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp S--HHHHHHHHHHHHHTSSSSCT-TTTC------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred C--hHHHHHHHHHHHHHhcCCcH-HHHH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4 45699999999999852110 1111 123567899999999999999999999999998754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-11 Score=161.03 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=93.4
Q ss_pred CCceEEEEEeccccccc-----ccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNLKQ-----TMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
-.|.|.|+|++|.||.. ..|+.||||++.++. +.++||||+++++||+|||+|.|.+..+ ..+.|+|+|||+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence 35899999999999954 579999999999954 3455799999999999999999999976 678999999999
Q ss_pred CCCCCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|.+.+|+|.|.|.++...++...+|+|.+.
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 999988999999999999877778899999765
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-08 Score=125.78 Aligned_cols=389 Identities=12% Similarity=0.046 Sum_probs=243.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHHHHHH
Q 000124 220 IIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKAVV 298 (2138)
Q Consensus 220 ~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~ 298 (2138)
.++..+.+++.++|..|-..|.++... ...++...|+.++.+. .+..+|..|...|+++.......+..-.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 444455567888999998888876521 1245778888888754 3678999999999988764221111000
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000124 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2138)
Q Consensus 299 e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~ 378 (2138)
......+ +.+
T Consensus 77 -----~~~~~~l---~~~-------------------------------------------------------------- 86 (462)
T 1ibr_B 77 -----QQRWLAI---DAN-------------------------------------------------------------- 86 (462)
T ss_dssp -----HHHHHTS---CHH--------------------------------------------------------------
T ss_pred -----HhhhhcC---CHH--------------------------------------------------------------
Confidence 0000000 000
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC--CHHHHHHHHHHH
Q 000124 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA--TADVREYLILSL 456 (2138)
Q Consensus 379 ~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss--s~evq~~Aa~aL 456 (2138)
....+...|+..+...+.. + ..++.+++.++....-.. .-.+.++.++..+.++ +..++..++.+|
T Consensus 87 --------~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 87 --------ARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp --------HHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 0011222233333333222 3 445555555543211000 0135677788888887 888999999999
Q ss_pred HHhhhcc-chhhHHhhhchhHHHHHHHhcCC--chhhHHHHHHHHHHHhhcCchhHH-HHHhcCCchHHHHHhhhCCHHH
Q 000124 457 TKLCRRE-VGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKW-AITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 457 ~~Ls~~s-~~~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLa~~s~e~r~-~I~~aGaIp~LV~LLks~d~~v 532 (2138)
..++... +...... -...++.+.+++++. +..+|..|+.+++++...-.++.. .....-.++.+.+.+.+.++++
T Consensus 155 ~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 155 GYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 9988753 1111111 134578888888877 789999999999987642221110 0011113455566677779999
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh------------------c---
Q 000124 533 REVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------------------D--- 590 (2138)
Q Consensus 533 re~Aa~aL~nLs~~sd~-~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~------------------e--- 590 (2138)
|..++.+|..+...... .+..+. .+.++.++..+++.+++++..+...+..++... .
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999753221 111110 034455556677888999999999998887642 0
Q ss_pred -------hhhHHHHHHHhcCC-------CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHH
Q 000124 591 -------SATINQLLALLLGD-------SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEY 656 (2138)
Q Consensus 591 -------~~aI~~Li~LL~~~-------d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~ 656 (2138)
...+|.+++.+.+. +..++..+..+|+.++..... ... ...++.+...+++.++.+|+.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHHH
Confidence 23456666777532 346788888999988765432 221 235677778888899999999
Q ss_pred HHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 657 AASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 657 Aa~ALanL~s~~~-e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
|+.+|..++.+.. +..... -..+++.+++.+++.++.+|..|+++|++++.
T Consensus 386 al~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999987432 211111 15688999999999999999999999999986
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-11 Score=155.31 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=14.4
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCC-CccccccccC---CCCCccccceeeecCCCCCCeEEEEEeec-C--
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-PRQTKVVSHS---ISPEWKEGFTWAFDVPPKGQKLHIICKSK-N-- 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~---~~p~w~~~f~~~~~~~p~~~~l~~~~~~~-~-- 2081 (2138)
.|.|.|+|++|.||..+ . ||||++.+ +|. .+||||++|+ +||+|||+|+|.+. |+ .+.|+|+||++ +
T Consensus 10 ~~~L~V~VieAk~L~~~-d--dpYv~v~l-~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK-K--RYYCELCL-DDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC-------------------------------------------------CCEECC---------------------
T ss_pred ccEEEEEEEEcCCcCCC-C--CCeEEEEE-CCeEEeeeeEEeCCCCCCCCccccEEEEecC-CC-ccEEEEEEEecCCcc
Confidence 47899999999999765 3 99999999 454 4579999999 99999999999875 44 59999999995 3
Q ss_pred -CC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2082 -TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 -~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+ +.+.+|+|.|.+.++...+.+.++|+|.+.
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~ 117 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117 (483)
T ss_dssp -----------------------CCEECC-----
T ss_pred ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence 23 668899999999999988889999999654
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=137.65 Aligned_cols=90 Identities=19% Similarity=0.396 Sum_probs=75.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ ..+||+|+++++||.|||+|.|.+..+.+ +..|+|+||+++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 57899999999999 456688999999999543 23469999999999999999998854433 347999999999
Q ss_pred CCCC-cccceEEEEecce
Q 000124 2082 TFGK-STLGKVTIQIDKV 2098 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v 2098 (2138)
.+|+ +.+|+|.|.+...
T Consensus 229 ~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp SSSCCCEEEEEEEETTCC
T ss_pred CCCCCcEEEEEEECCCCC
Confidence 9965 6899999999763
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=149.07 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=93.4
Q ss_pred cCCceEEEEEecccccccc----cCCCCceEEEEecCC----CCccccccccC-CCCCccccceeeecCCCCCCeEEEEE
Q 000124 2007 CLPGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNG----PPRQTKVVSHS-ISPEWKEGFTWAFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~t~~~~~~-~~p~w~~~f~~~~~~~p~~~~l~~~~ 2077 (2138)
--||.|+|+|++|.||... .|..||||++.+... .++||||+++| +||+|||+|+|.+..| -...|+++|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEE
Confidence 3578999999999999432 478999999999332 24479999998 9999999999999876 457999999
Q ss_pred eecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCc---cceEEEEEec
Q 000124 2078 KSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS---RTLEIEIIWS 2130 (2138)
Q Consensus 2078 ~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~w~ 2130 (2138)
|+++.+| .+.+|++.|.|..+.. |. ..++|.+. +|.. .+|.++++.+
T Consensus 573 ~D~D~~~~dd~iG~~~ipl~~L~~-G~--r~v~L~d~---~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDSSSKNDFIGQSTIPWNSLKQ-GY--RHVHLLSK---NGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EECCSSSCCEEEEEEEEEGGGBCC-EE--EEEEEECT---TSCEEEEEEEEEEEEEE
T ss_pred EEcCCCCCCceeEEEEEEHHHcCC-Cc--EEEeCCCC---CcCCCCceEEEEEEEEE
Confidence 9999984 5789999999999754 42 26888766 3443 5677777654
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-11 Score=141.52 Aligned_cols=104 Identities=17% Similarity=0.307 Sum_probs=82.1
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC-C---CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN-G---PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~-~---~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+.. | .++||+|+++++||.|||+|.|.+..+.+. ..|+|+|||++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 48999999999999 45568899999999953 3 334699999999999999999987655443 47999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+...-.. .+..+|.+...
T Consensus 231 ~~~~~~~iG~~~i~l~~~~~~-~~~~W~~~~~~ 262 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAADPH-GREHWAEMLAN 262 (296)
T ss_dssp SSSCCEEEEECCCSSCTTCHH-HHHHHHTSSSS
T ss_pred CCCCCceEEEEEECCccCCch-hHHHHHHHHhC
Confidence 9975 7899999999875331 23444554443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-06 Score=108.77 Aligned_cols=481 Identities=14% Similarity=0.105 Sum_probs=294.2
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
..+....++++.+.+...|.-+--.+..++........ -.+..+.+-|.++++.+|..|+++|.++.. +.
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~e 142 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVGS------RE 142 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC------HH
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC------HH
Confidence 34778888999999999999888888888755332111 124567777788899999999999999973 21
Q ss_pred hHHHHHHcCcHHHHHHhh--CCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQL--NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL--~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
+. ...+|.+.+.+ .+. .+.|+..|+-++.++....+.. +...+.++.+..+|.+.++.++.+|+.+|
T Consensus 143 ----~~-~~l~~~v~~~l~~~d~---~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l 211 (621)
T 2vgl_A 143 ----MA-EAFAGEIPKILVAGDT---MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLI 211 (621)
T ss_dssp ----HH-HHHTTHHHHHHHCSSS---CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----HH-HHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHH
Confidence 22 34678888888 543 4789999999999998865432 11236799999999998999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHH----HHhccC-C-----------CHhHHHHHHHHHHHHhhc-CHHHHHHHHhcCCH
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALV----QLVGQN-N-----------DISVRASAADALEALSSK-SIKAKKAVVAADGV 303 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL----~LL~s~-s-----------d~~vr~~Aa~aL~nLs~~-s~e~Rk~i~e~ggL 303 (2138)
..++..+++. + ...++.++ +++..+ . ++-.+......+..+... .++.++.+.+ .+
T Consensus 212 ~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L 284 (621)
T 2vgl_A 212 TTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CL 284 (621)
T ss_dssp HHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HH
T ss_pred HHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HH
Confidence 9998654321 1 12334333 333211 1 455666666666555542 2444444432 22
Q ss_pred HHHHHhhcCCch-hhhhhhh-hhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCC
Q 000124 304 PVLIGAIVAPSK-ECMQGQR-GQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGV 381 (2138)
Q Consensus 304 ~~LI~LL~s~s~-e~mq~~~-~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~ 381 (2138)
+.++..+.+..+ ...++.. ..++.--|..++. .++ +
T Consensus 285 ~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~--------------------------------------~l~--~-- 322 (621)
T 2vgl_A 285 ETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII--------------------------------------HHD--S-- 322 (621)
T ss_dssp HHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH--------------------------------------HHC--C--
T ss_pred HHHHHhhccCcccccccccchHHHHHHHHHHHHH--------------------------------------hcC--C--
Confidence 333332211100 0011000 0001111111111 111 0
Q ss_pred CCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhh
Q 000124 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLC 460 (2138)
Q Consensus 382 ~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls 460 (2138)
...+. ..+...|..++.+.++. +|.-++.+|..+.........+ ......++..+. +.+..++..+...|..++
T Consensus 323 -~~~~~-~~~~~~L~~~L~~~~~n-iry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 323 -EPNLL-VRACNQLGQFLQHRETN-LRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp -CHHHH-HHHHHHHHHHSSCSCHH-HHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred -cHHHH-HHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 01111 13446778888766654 8999999999886442111122 223456777777 889999999999999998
Q ss_pred hccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHH
Q 000124 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~a 539 (2138)
.. .+... .+..|...+...+...+..++..++.++..- +... ..+..|++++......+...+...
T Consensus 398 ~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~ 464 (621)
T 2vgl_A 398 DR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYR 464 (621)
T ss_dssp CH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHH
T ss_pred Ch--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHH
Confidence 55 33333 3567778888888899999999999988521 2222 245678888876544455555666
Q ss_pred HHHHhcCChhHHHHHHHcCCcchhhhccccCC--hhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCCCcchHH
Q 000124 540 LWILCCHSEDIRACVESAGAVPAFLWLLKSGG--PKGQDASAMALTKLIRAADS-------ATINQLLALLLGDSPSSKA 610 (2138)
Q Consensus 540 L~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~--~evq~~Aa~AL~nLs~~~e~-------~aI~~Li~LL~~~d~~V~~ 610 (2138)
+..+....+..+... +..|++.+.+.. ..+...++|.++..+..-.. +.+..+.+-+...+..++.
T Consensus 465 l~~ii~~~~~~~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~ 539 (621)
T 2vgl_A 465 VIQIVINRDDVQGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRA 539 (621)
T ss_dssp HHHHHGGGCSCHHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCChhHHHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHH
Confidence 666655445555442 345666666543 35667788999988754221 3345555556678888999
Q ss_pred HHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhc--CCCHHHHHHHHHHHHHHh
Q 000124 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLN--SSNEENQEYAASVLADLF 665 (2138)
Q Consensus 611 ~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLk--s~s~evre~Aa~ALanL~ 665 (2138)
++..++..+....+ +. + ..+..+++ ... +.+.++|+.|...+.=+.
T Consensus 540 ~~Lta~~Kl~~~~p--~~-~------~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 540 LLLSTYIKFVNLFP--EV-K------ATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHCG--GG-H------HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCh--HH-H------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 99888888754321 11 0 11333333 223 679999999987654443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.1e-06 Score=107.51 Aligned_cols=512 Identities=13% Similarity=0.102 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHh
Q 000124 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2138)
Q Consensus 100 vr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~L 179 (2138)
-+....+++..+..+.+. ..+...+++++.+++.+.++.+.-++..++.. +++ .+.- ++..+.+=
T Consensus 55 k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e---~~~L--~iN~l~kD 119 (621)
T 2vgl_A 55 KKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSE---LIRL--INNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHH---HHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcH---HHHH--HHHHHHHh
Confidence 344455555544433321 36788899999999999999999999998852 222 1111 45566666
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhcCCCcchhhcc
Q 000124 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL--SSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2138)
Q Consensus 180 L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL--~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~ 257 (2138)
+.+++ +.++..|+++|+++.. ..+.+ .-++.+.+.| .+.++.+|..|+-++.++...+++... ..
T Consensus 120 l~~~n---~~ir~lALr~L~~i~~------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~ 186 (621)
T 2vgl_A 120 LASRN---PTFMGLALHCIANVGS------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MG 186 (621)
T ss_dssp HHSCC---HHHHHHHHHHHHHHCC------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CC
T ss_pred cCCCC---HHHHHHHHHHhhccCC------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---ch
Confidence 66554 6789999999999965 22322 2456777888 778899999999999999976654332 24
Q ss_pred chHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHh
Q 000124 258 GAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337 (2138)
Q Consensus 258 GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanI 337 (2138)
+.++.+..+|. +.+..++..|..++..+...+++.-. ..++.+++.+. ++
T Consensus 187 ~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~------------------------~l 236 (621)
T 2vgl_A 187 DWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLS------------------------RI 236 (621)
T ss_dssp SCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHH------------------------HH
T ss_pred hHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH------------------------HH
Confidence 78999999997 67889999999988888775433211 11122222110 00
Q ss_pred hcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 000124 338 YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2138)
Q Consensus 338 sGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~ 417 (2138)
+...... .+++.-..+. +++ .|...++.+..
T Consensus 237 --------------l~~~~~~-------------------~~~~~~~~~~---------------~~w-~qi~il~ll~~ 267 (621)
T 2vgl_A 237 --------------VTSASTD-------------------LQDYTYYFVP---------------APW-LSVKLLRLLQC 267 (621)
T ss_dssp --------------HHCCSSS-------------------CSTTEETTEE---------------SHH-HHHHHHHHGGG
T ss_pred --------------HhCCCCC-------------------ccchhhcCCC---------------Cch-HHHHHHHHHHH
Confidence 0000000 0000000000 000 11222222221
Q ss_pred hhc--CchhHHHHhhhchHHHHHHHH---------ccC--CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc
Q 000124 418 LYG--NIFLSQWVSHAEAKKVLIGLI---------TMA--TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 418 L~~--n~~~~~~L~e~~gI~~LV~LL---------~ss--s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
+.. +++..+.+. +.+..++..+ .+. ...+..+++.++..+... ++.. ..++..|..++.
T Consensus 268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~~-----~~~~~~L~~~L~ 339 (621)
T 2vgl_A 268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNLL-----VRACNQLGQFLQ 339 (621)
T ss_dssp SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHHH-----HHHHHHHHHHSS
T ss_pred hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HHHH-----HHHHHHHHHHhc
Confidence 111 011111110 0111111111 111 235667777777776532 2211 245778889999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+.++.+|..++..|..++...+. ...+ ......++..|+ +.+..+|..+..+|..++. .+.... .+..|
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~------Iv~eL 409 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ------IVAEM 409 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH------HHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH------HHHHH
Confidence 89999999999999999875432 1222 345677888888 8899999999999999975 222222 34456
Q ss_pred hhccccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhh
Q 000124 564 LWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 564 v~LLkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~ 640 (2138)
...+.+.+.+.+..+..+++.++..- ....+..|++++......+...+...+..+....+ +. + .-++.
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~-~-----~~~~~ 481 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DV-Q-----GYAAK 481 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SC-H-----HHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hH-H-----HHHHH
Confidence 66777788999999999999988541 24567889999986655555555555555543211 11 1 11466
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 641 SLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 641 aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
.|+..+++. ...+-..++|.++..+..-++. ..+.-...+..+..-+...++.+|..+..++.++....++ .+.
T Consensus 482 ~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~---~~~ 557 (621)
T 2vgl_A 482 TVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---VKA 557 (621)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG---GHH
T ss_pred HHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH---HHH
Confidence 777777765 3455566778888776421110 0000001234455555678899999999999999753322 221
Q ss_pred hHHhcCChhhHHhh-hh--cCCHHHHHHHHHHHHHhhCC
Q 000124 719 SYIAEGDVKPLIKL-AK--TSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~L-L~--s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
.+..+++. .. +.+.++|..|...+.-+..+
T Consensus 558 ------~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 558 ------TIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp ------HHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 23333333 33 78899999999988877654
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=144.30 Aligned_cols=105 Identities=21% Similarity=0.426 Sum_probs=91.1
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
-+|.|+|+|.+|.|| .+..|..||||++.+- +..++||+|+++++||.|||+|+|.+........|.|+||+.+
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 478999999999999 5677999999999992 2234469999999999999999999988777788999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+++ +.+|.+.|.+.++...+ ..++|.|.+.
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccchhhhccCC-cccceeeccc
Confidence 9954 67999999999998766 4899999876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.80 E-value=0.00011 Score=98.81 Aligned_cols=338 Identities=12% Similarity=0.063 Sum_probs=227.2
Q ss_pred HHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc---CCchhhHHHHHHHHHHHhhcCchhHHHHHhc
Q 000124 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2138)
Q Consensus 439 ~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a 515 (2138)
+++....+..+..|+..|+-+-..+. .+|+..|...+. ++++.++..|+.+|+.+......
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------- 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------- 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------
T ss_pred hhhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------
Confidence 34555556667777777776655432 356777888776 66788999999999998764321
Q ss_pred CCchHHHHHhhhCC--------HHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 516 GGIPPLVQLLEAGS--------QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 516 GaIp~LV~LLks~d--------~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
.++..|...|.+.+ +.++..|+-+|+....... . ..++..|..++.+.+..+++.++.+|+.+..
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 14566777776655 6788888888888644221 1 1235557777777777778889999887743
Q ss_pred h-hchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHH
Q 000124 588 A-ADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADL 664 (2138)
Q Consensus 588 ~-~e~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL 664 (2138)
. .+..++..|+..+. +.++.++..+.-+|+.+. +.+...++.+++.+.. .++-+|..++.++.--
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 24567777777654 556667777777777653 2344468888887764 5888999888776643
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh-hhcCCHHHHH
Q 000124 665 FSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL-AKTSSIDAAE 742 (2138)
Q Consensus 665 ~s~~~e~r~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L-L~s~s~~Vr~ 742 (2138)
..+ ..+ ..+++.|+..+ .+.++.+|..|+.+|+.+....+ ..++.++.+ +++.++.+|.
T Consensus 570 yaG-TGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 570 YAG-TGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp TTT-SCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------SSHHHHTTTGGGCSCHHHHH
T ss_pred hcC-CCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------HHHHHHHHHHHhcCCHHHHH
Confidence 331 111 12455566554 45678899999999999876332 256777764 4678999999
Q ss_pred HHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccC
Q 000124 743 TAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2138)
Q Consensus 743 eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~ 822 (2138)
.|..||+.++.... ...++..|.++..+.++.||+.|+.+|+.++..+.. ..... -......|.......
T Consensus 631 gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn--a~~~r--va~~l~~L~~~~~dk 700 (963)
T 4ady_A 631 GTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE--KLNPQ--VADINKNFLSVITNK 700 (963)
T ss_dssp HHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT--TTCTT--HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc--ccchH--HHHHHHHHHHHHhcc
Confidence 99999999965322 123667788899999999999999999999875421 10000 022333455555444
Q ss_pred CCCchhHHHHHHHHHHHh
Q 000124 823 DMNGTDVADALEVVALLA 840 (2138)
Q Consensus 823 ~~~~~~~~~AL~ALa~La 840 (2138)
+.+...+.-|.-+.|.+-
T Consensus 701 ~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 701 HQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 455667888888888775
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.70 E-value=0.00015 Score=97.72 Aligned_cols=324 Identities=15% Similarity=0.092 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc---cCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT---MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~---sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
.+-.++.+|+-+..+.. .+++..|-..+. ++++.++.-|+.+|+.+..+... ..+..|...+
T Consensus 374 ~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHH
Confidence 45667777777643211 245666666665 56778888888888887766321 2466777777
Q ss_pred cCCc--------hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH--hcCChhHHHH
Q 000124 484 GLSS--------EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL--CCHSEDIRAC 553 (2138)
Q Consensus 484 ~s~d--------~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL--s~~sd~~r~~ 553 (2138)
.+.+ +.+|..|+.+|+.....+.. ...+..|...|.+.+..+++.|+.+|+.+ +..+..
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---- 507 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---- 507 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred cCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH----
Confidence 6544 67888899998886542211 12467788888888777788888888866 332222
Q ss_pred HHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 554 VESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 554 I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
++..|+..+ .+.+..+++.++.+|+.+... +.+.++.+++.|. +.++.++..+.-+++.-..-..
T Consensus 508 -----ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG------- 574 (963)
T 4ady_A 508 -----AIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLASDESLLRYGGAFTIALAYAGTG------- 574 (963)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC-------
T ss_pred -----HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-------
Confidence 334454433 445678999999999987544 4467788888876 5666777666666654221112
Q ss_pred hhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhcCC
Q 000124 632 GSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRP 709 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~L-L~dgs~~Vk~~AA~ALanLa~s 709 (2138)
....++.|++.+. +.++.+|..|+.+|+.+..+++ ..++.++.+ ++++++.+|..|+.||+.++.+
T Consensus 575 ---n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 575 ---NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp ---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred ---CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 2235776777654 4588999999999999876443 345666664 4678999999999999999875
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-chH-HHHHHhcCcHHHHHHHHhC--CCHHHHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDI-AAEVLLEDVVSALTRVLAE--GTSEGKKNA 785 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~-~e~-r~~Ii~~g~L~~LV~LL~~--~~~~Vr~~A 785 (2138)
++. ..++..|..++++.+..|+..|+.+|+.+... .+. ..++ .+.+..|..+..+ .++..+--+
T Consensus 643 n~~----------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 643 KGL----------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp SCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCc----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHH
Confidence 432 22678889999999999999999999998652 221 0011 1133446666654 456677777
Q ss_pred HHHHHHhh
Q 000124 786 SRALHQLL 793 (2138)
Q Consensus 786 a~AL~nL~ 793 (2138)
.-+.+-+.
T Consensus 711 ~iAqGll~ 718 (963)
T 4ady_A 711 CVAQGIMN 718 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666553
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.54 E-value=7.8e-08 Score=128.96 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCC------Ccccc-ccccC-CCCCccc-ccee-eecCCCCCCeEEEEE
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP------PRQTK-VVSHS-ISPEWKE-GFTW-AFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~t~-~~~~~-~~p~w~~-~f~~-~~~~~p~~~~l~~~~ 2077 (2138)
.||.|+|+|++|++|.+ ++.||||++.+ .|. ++||| ||++| +||+||| +|+| .+..| --..|+++|
T Consensus 676 ~~~~L~V~Visa~~L~~--~~~DPYV~V~l-~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE--RSVRTYVEVEL-FGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS--SCCCEEEEEEE-ECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc--cCCCcEEEEEE-EecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEEEEE
Confidence 47889999999999975 46899999999 441 23699 89865 9999999 6999 77655 445999999
Q ss_pred eecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2078 KSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2078 ~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
|+.+ .+.+|.+.|.|+.+-. |- -.++|.+..++.=...+|.++++
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~-G~--r~v~L~~~~g~~~~~~~Lfv~i~ 796 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNS-GY--HHLCLHSESNMPLTMPALFIFLE 796 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCC-EE--EEEEEECTTCCEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCC-Cc--EEEeccCCCCCCCCceEEEEEEE
Confidence 9986 7899999999998753 42 25677665221112355666665
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.2e-08 Score=128.73 Aligned_cols=115 Identities=17% Similarity=0.373 Sum_probs=86.6
Q ss_pred cCCceEEEEEecccccccccCCCCceEEEEecCCC-------CccccccccC-CCCCcccc-ceee-ecCCCCCCeEEEE
Q 000124 2007 CLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-------PRQTKVVSHS-ISPEWKEG-FTWA-FDVPPKGQKLHII 2076 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~t~~~~~~-~~p~w~~~-f~~~-~~~~p~~~~l~~~ 2076 (2138)
..||.|+|+|++|++|.++ ..||||++.+ .|. ++|||||++| +||+|||+ |+|. +..| --..|.++
T Consensus 647 ~~~~~L~V~Visaq~L~~~--~~DPYV~V~l-~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~ 722 (816)
T 3qr0_A 647 VVAGTIEIKIISAQFLSDK--QISSYVEVEM-YGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRII 722 (816)
T ss_dssp SCCEEEEEEEEEEECCCSS--CCCEEEEEEE-ESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEE
T ss_pred ccceEEEEEEEEcccCCCC--CCCCeEEEEE-eCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEE
Confidence 3578999999999999754 6899999999 442 2369999985 99999998 9998 7655 44799999
Q ss_pred EeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2077 CKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2077 ~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
||+++ .+.+|.+.|.|+.+-. | |. ..+|.+..++.=...+|.+++.=..
T Consensus 723 V~D~d---ddfiG~~~ipL~~L~~-G-yR-~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 723 VSEEN---GKFIGHRVMPLDGIKP-G-YR-HVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp EEETT---SCEEEEEEEESTTCCC-E-EE-EEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred EEecC---CCeeeEEEEEHHHcCC-c-ce-EEEEeCCCCCCCCceEEEEEEEEEe
Confidence 99985 6899999999998654 4 21 3667665222222356777776543
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.4e-08 Score=128.68 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCC------CccccccccC-CCCCccc-cceee-ecCCCCCCeEEEEEe
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP------PRQTKVVSHS-ISPEWKE-GFTWA-FDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~-~~p~w~~-~f~~~-~~~~p~~~~l~~~~~ 2078 (2138)
.|..|+|+|++|++|.++ ..||||++.+ .|. ++|||||++| +||+||| +|+|. +..| -...|.++||
T Consensus 723 ~~~~L~V~Visaq~L~~~--~~DPYV~V~l-~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~ 798 (885)
T 3ohm_B 723 VANALRVKVISGQFLSDR--KVGIYVEVDM-FGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAF 798 (885)
T ss_dssp CCEEEEEEEEEEESCCSS--CCCEEEEEEE-ESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEE
T ss_pred cceEEEEEEEEeccCccc--CCCcEEEEEE-eCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEE
Confidence 355899999999999764 6899999999 442 3479999886 9999999 59998 6655 4568999999
Q ss_pred ecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2079 SKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2079 ~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|++ .+.+|.+.|.|+.+-. | |. ..+|.+..+..=...+|.+++.-..
T Consensus 799 D~d---ddfiG~~~lpL~~L~~-G-yR-~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 799 EEG---GKFVGHRILPVSAIRS-G-YH-YVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp ETT---TEEEEEEEEETTTCCC-E-EE-EEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cCC---ccEEeeEEEEHHHcCC-C-ce-EEEecCCCCCccCceEEEEEEEEEe
Confidence 987 6899999999998653 4 22 3667665222212367777776554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=115.43 Aligned_cols=194 Identities=14% Similarity=0.070 Sum_probs=146.5
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM-RLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv-~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.+.++++.+++++++.|..|+.+|.+|+. ++..+..+...+++.+++ ++|.|.+..+|.+|+++|+||+... +.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~--g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE--EADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS--CHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--CchH
Confidence 46778888999999999999999999998 899999999999998765 5789999999999999999998622 2367
Q ss_pred hhhHHhcCChhhHHhhhhcCC---------------------HHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH
Q 000124 717 KMSYIAEGDVKPLIKLAKTSS---------------------IDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s---------------------~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL 774 (2138)
+..++..|++++|..+++... .++...++.+|.+|+. +.+....+...++++.|+.++
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788999999999999986421 2344567888888876 555666788889999999877
Q ss_pred hCC---CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhh---hHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000124 775 AEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF---VVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 775 ~~~---~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~g---av~~LV~LL~s~~~~~~~~~~AL~ALa~La 840 (2138)
.+. ..+++..|..+|..++.+. ..+...+...+ ....+..+.. ... ..+..+...|.++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~~~~~~~ll~~~~-~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQETHVYDVLLKLAT-GTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCSSCHHHHHHHHHH-SSC--TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcchHHHHHHHHHHhc-CCc--HHHHHHHHHHHhHh
Confidence 443 4689999999999999875 34444443322 2233333332 222 34677777777765
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=107.41 Aligned_cols=197 Identities=16% Similarity=0.120 Sum_probs=153.5
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHH-HHHccCCHHHHHHHHHHHHHhhhc-cchhh
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI-GLITMATADVREYLILSLTKLCRR-EVGIW 467 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV-~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~ 467 (2138)
.+.|+| ..|++++.. .|..|+.+|++++.++...+.+...+++..++ .++...+.+++..|+.+|++++.+ ..+.+
T Consensus 35 ~i~Pll-~~L~S~~~~-~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAK-SRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCS-HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHH-HHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 454554 557777765 89999999999999999888888888887755 578889999999999999999976 35778
Q ss_pred HHhhhchhHHHHHHHhcCCch---------------------hhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh
Q 000124 468 EAIGKREGIQLLISLLGLSSE---------------------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2138)
Q Consensus 468 ~~I~e~ggIp~LV~LL~s~d~---------------------~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk 526 (2138)
..+.+.|++++|..+++.... .+...++.+|++|+..+.+....+...++++.|+.+|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 888999999999988753211 13346778899999877777778888899999999985
Q ss_pred hC---CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc--ccCChhHHHHHHHHHHHHHHh
Q 000124 527 AG---SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--KSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 527 s~---d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL--kS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+. ..+++..++.+|++++.+++.....+.+.+....+..++ ..++...+..+++.|.|+...
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 43 578999999999999998888777777766554332222 233444577888999998654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00014 Score=82.83 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=162.1
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chH
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QED 627 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d 627 (2138)
.+.+..|..++.+.++.++.++..+|.++....+ .+.++.+++++++.++.+...+.+|++.+....+ +++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4467778899999999999999999999986621 3567899999999999999999999999986522 333
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
.+.+ .+.+|..+++++++-.++.++..+..+--.. ...+++..+..++.+.+.++|..+.+++.+++
T Consensus 112 ~y~K------l~~aL~dlik~~~~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK------AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH------HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH------HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3333 4789999999999999999999999883211 11256678888999999999999999999998
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHH-HH-hCCCHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL-AEGTSEGKKNA 785 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~-LL-~~~~~~Vr~~A 785 (2138)
..... ++ .-.+++.-+-.+|++.|+.+++.|+.+|-.+.+.|-....+.+--.+-..+. +. ..|.|.++.+|
T Consensus 179 ~~S~D-~~-----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 179 NSSAD-SG-----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp GGCSS-CC-----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred cccCC-HH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 72111 11 1245778888999999999999999999999987643222222223344443 33 57889998888
Q ss_pred HHHHHH
Q 000124 786 SRALHQ 791 (2138)
Q Consensus 786 a~AL~n 791 (2138)
-.+...
T Consensus 253 ~~v~~~ 258 (265)
T 3b2a_A 253 KKVSDL 258 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-06 Score=92.11 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=95.5
Q ss_pred cchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccc
Q 000124 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2138)
Q Consensus 636 ~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~ 715 (2138)
...++.++.+++++++.+|..|+.+|.++.. ..++.|+++|++.++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3468889999999999999999998887643 136899999999999999999999999853
Q ss_pred hhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 716 ~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
...++.|+.+|+++++.||..|+++|+++. ..++++.|+.++.+.++.+|..|+++|.++
T Consensus 72 -------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 125899999999999999999999999886 245788999999999999999999998653
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.033 Score=76.82 Aligned_cols=694 Identities=10% Similarity=0.058 Sum_probs=314.5
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcC
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG 171 (2138)
+.+++++.|..|-..|..+-..++ +...+..+|.. .+.++|..|+.+|.+......+.-+...+..++..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p~---------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASPQ---------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTSTH---------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 445666677777777777654443 33445666654 58999999999999886421111111123334444
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC------CHHHHHHHHHHHHHHHh
Q 000124 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2138)
Q Consensus 172 ~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~------s~evq~~A~~aL~nLs~ 245 (2138)
.+..+.+.-. ..+.++.....+|..+....-..|.. .++.++..+.++ ++...+.++.+|..++.
T Consensus 87 ll~~l~~~~~----~~~~vr~kl~~~la~i~~~~~p~Wp~-----~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 87 ILESIVRFAG----GPKIVLNRLCISLGAYIVHMLGEWPG-----AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 5555555431 13568888888888887763214443 467777777764 46678888899988883
Q ss_pred h----cCCCcch-hhc--cchHHHHH----HHhccCCCH-------hHHHHHHHHHHHHhh--cCHHHHHHHHhcCCHHH
Q 000124 246 A----FGDSIPT-VID--SGAVKALV----QLVGQNNDI-------SVRASAADALEALSS--KSIKAKKAVVAADGVPV 305 (2138)
Q Consensus 246 ~----~~e~r~~-l~~--~GaL~~LL----~LL~s~sd~-------~vr~~Aa~aL~nLs~--~s~e~Rk~i~e~ggL~~ 305 (2138)
. .+..++. +.+ ...++.++ ..+....+. .++..+..++..... ..+.. .....++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 2 1111111 100 11233333 333321111 455566666654332 11110 11122333
Q ss_pred HHHhhc----CC----chhhhhhhhhhhhHHHHHHHHHHhhcCch-----h----HHHHhhh----h---cCCCC----c
Q 000124 306 LIGAIV----AP----SKECMQGQRGQALQGHATRALANIYGGMP-----A----LVVYLGE----L---SQSPR----L 357 (2138)
Q Consensus 306 LI~LL~----s~----s~e~mq~~~~~alqe~Al~ALanIsGgis-----~----LI~~L~e----l---L~~~~----s 357 (2138)
++. +. .+ +..+.. ......++.|+.|+..+.+.-. + +++.+.. . ....+ .
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCMT-ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCCC-HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHh-hhhhhccccccccccccC-cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 333 20 00 000000 0011266778888877764211 1 1111111 1 11111 1
Q ss_pred -hhhHHHHHHHHHHHH-HHhhcC--CCCCCcccchhhHHHHHHHHcCC----CChhHHHHHHHHHHHHhhcC--------
Q 000124 358 -AAPVADIIGALAYAL-MVFEQK--SGVDDEPFDARQIEDILVMLLKP----HDNKLVQERVLEAMASLYGN-------- 421 (2138)
Q Consensus 358 -s~~~A~~L~aLa~~l-~~l~q~--~~~~~~~~~~~~Ie~~LV~LL~s----~~~e~vr~~Aa~AL~~L~~n-------- 421 (2138)
......++..++... ..+... +......-.-..+.+.|..+... ..++.+...++..+..+...
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 391 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDE 391 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccccc
Confidence 112223332222110 000000 00000000001222333443322 22334667777766665321
Q ss_pred --chhHHHHhh--hchHHHHHHHHccCCH---------------HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 422 --IFLSQWVSH--AEAKKVLIGLITMATA---------------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 422 --~~~~~~L~e--~~gI~~LV~LL~sss~---------------evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
...+..+.. ...++.++..+...+. ..+..+..+|..++..-++. +. .-.++.+.+.
T Consensus 392 ~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l-~~~~~~l~~~ 467 (971)
T 2x1g_F 392 QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---IL-EILAAMLDEA 467 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HH-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HH-HHHHHHHHHH
Confidence 111111111 0223334444322111 23455556665555432110 00 0112222333
Q ss_pred hcC-----CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---h--hCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 483 LGL-----SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---E--AGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 483 L~s-----~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---k--s~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
+.+ .+...++.++.+++.++....+.. ...++.++.++ . +.++.+|..++++++.++..-.....
T Consensus 468 l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~ 542 (971)
T 2x1g_F 468 IADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA 542 (971)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence 332 566789999999999987433221 12344444433 2 34889999999999988652111111
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS-------ATINQLLALLLGD--SPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~-------~aI~~Li~LL~~~--d~~V~~~A~~AL~~La~~~ 623 (2138)
.+ ...++.|+..+ + +.++..|+.++.+++..... ..+..+.+++... +.+.+..+.++++.++...
T Consensus 543 ~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 543 YI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 11 12344555555 2 78999999999999965332 2344555666653 4567888899999887643
Q ss_pred cchHHHHhhhcccchhhHHHH----hhcCC--CHHHHHHHHHHHHHHhhc----Ch---h--------hhhhhhhCCCHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQ----VLNSS--NEENQEYAASVLADLFSM----RQ---D--------ICGSLATDEIVN 682 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~----LLks~--s~evre~Aa~ALanL~s~----~~---e--------~r~~Ive~GaV~ 682 (2138)
+..+. ...+ ...+++++. +++.. +++.+......+..|+.. .. + ..-.-....+++
T Consensus 618 ~~~~~-~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (971)
T 2x1g_F 618 RPEEI-PKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMP 694 (971)
T ss_dssp CTTHH-HHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHH
T ss_pred CHHHH-HHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHH
Confidence 31111 1110 112333333 33333 444445555555544321 00 0 000112235666
Q ss_pred HHHHHhcc--CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC----C
Q 000124 683 PCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS----D 754 (2138)
Q Consensus 683 ~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~----~ 754 (2138)
.+..++.. .++.+.+.+.+++++++..... .. ...+++++..+.. .+.+. ..++..++.+.. +
T Consensus 695 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~------~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 695 IFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF------QPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc------cccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCC
Confidence 66677654 3678999999999997652111 11 1134555444421 11111 224555555543 2
Q ss_pred chHHHHHHh--cCcHHHHHHHHhC-------CCHHHHHHHHHHHHHhhhcCCCchhhhhhhh-hhhhHHHHHHhhccCCC
Q 000124 755 PDIAAEVLL--EDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 755 ~e~r~~Ii~--~g~L~~LV~LL~~-------~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~-~~gav~~LV~LL~s~~~ 824 (2138)
+.....+.. ......+..++.. .++++++.....+.++....+. .+..... -...+...+..+.. .
T Consensus 766 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~--~~~~s~~~l~~i~~~~~~~l~~-~- 841 (971)
T 2x1g_F 766 EGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ--VLEDKTLAYDRLVFYAQRGMTL-P- 841 (971)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG--GGGCTTSCHHHHHHHHHHHHTS-S-
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH--HHcCCcccHHHHHHHHHHHcCC-C-
Confidence 222222211 1122333333333 3788999999999998887642 1111100 12233344444432 2
Q ss_pred CchhHHHHHHHHHHHh
Q 000124 825 NGTDVADALEVVALLA 840 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La 840 (2138)
+......+...+..+-
T Consensus 842 ~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 842 ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2233556666555544
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=84.93 Aligned_cols=145 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred hhhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.++.|...+ ++.+..++..|+.++..|+..-.. .-.-.-..+++.++..+.+.++.+|..|..+|.++....+ .
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~ 131 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L 131 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H
Confidence 366677778 488999999999999999863111 1111223578999999999999999999999999986321 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--ch--HHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e--~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
..+++.|...+.+.++.+|..++..|..+... ++ ....+ ...+|.|+.++.+.++++|..|..++..+
T Consensus 132 ------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 132 ------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 12678888899999999999999999996542 33 12223 35889999999999999999999999999
Q ss_pred hhc
Q 000124 793 LKH 795 (2138)
Q Consensus 793 ~~~ 795 (2138)
+..
T Consensus 204 ~~~ 206 (242)
T 2qk2_A 204 IKL 206 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.6e-06 Score=89.33 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=94.4
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
...++.++.+++++++.++..|+++|+++.. ..++.|+++|++.++.++..++++|+.+. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--------------~~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------------DE 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------------SH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--------------CH
Confidence 5577888999999999999999999987742 23699999999999999999998887642 22
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..++.|+.+++++++.+|..|+++|.++.. .++++.|+.++++.++.+|..|+.+|.++
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 368999999999999999999999999864 34678899999999999999999998764
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0028 Score=69.46 Aligned_cols=211 Identities=15% Similarity=0.190 Sum_probs=155.8
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
...+..++.++.++-..+|.+|...+.+++..-. ...+..|+.+++ ++.-.......+++|.++.. .++.++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--~Pe~v~~- 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKS- 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--CHHHHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--CHHHHHh-
Confidence 4456778888998889999999999999985421 223445556654 34334445678888888754 3333333
Q ss_pred hcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 633 l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.++.+..-.+-+++.+|.+...+|..+...+|+....+ +..+..++.+.+..-|..|..-+..++..
T Consensus 108 -----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen--- 174 (253)
T 2db0_A 108 -----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGEN--- 174 (253)
T ss_dssp -----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTT---
T ss_pred -----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhcc---
Confidence 46777777778899999999999999998888766544 45677889988877777777666666541
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..+ .-.-.++.|..||++.+.-||..|+++|.+++. +|..|+.+.+ .++=+.+.++.++.+..++|++
T Consensus 175 --~~~---yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 175 --SFK---YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --THH---HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHH
T ss_pred --Ccc---ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHH
Confidence 112 123467889999999999999999999999997 6777765543 4555778889999999999998
Q ss_pred hhh
Q 000124 792 LLK 794 (2138)
Q Consensus 792 L~~ 794 (2138)
+..
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00042 Score=79.82 Aligned_cols=179 Identities=14% Similarity=0.138 Sum_probs=135.8
Q ss_pred hhhhccccCChhHHHHHHHHHHHHHHh-hc------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 562 AFLWLLKSGGPKGQDASAMALTKLIRA-AD------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 562 aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e------~~aI~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
.+.+.+.+.++..|+.++..|..+... ++ .+.++.|.+++. +.+..++..++.+++.++..... ++ ..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~-~~-- 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RF-SN-- 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GG-HH--
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hH-HH--
Confidence 466778899999999999999999876 22 356788888994 88889999999999999854322 11 00
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
.-...++.++..+++.+..+|+.|..+|.+++... .. ...++.+...+++.++.+|..++..|..+.......
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 01235899999999999999999999999998732 11 235778888999999999999999999976532110
Q ss_pred cchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
..... .. ..+++.|+.++.+.+.++|..|..+++.++.
T Consensus 168 ~~~~~-~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKK-LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHH-HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHH-HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 00111 11 2578999999999999999999999998863
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.75 E-value=0.4 Score=65.87 Aligned_cols=711 Identities=14% Similarity=0.088 Sum_probs=331.3
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 000124 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLS 109 (2138)
Q Consensus 31 med~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~ 109 (2138)
|+. ..+..+.++++.+..+ .+.+.|..|-.+|..+-..+ ++...+..+|.+ .++.+|.-|+.+|.
T Consensus 18 m~~--~~~~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~ 83 (963)
T 2x19_B 18 ALD--FTVENVEKALHQLYYD-PNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALH 83 (963)
T ss_dssp CCC--CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred CCH--hhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 554 2345677888775443 46778888999997765543 566677777754 57899999999997
Q ss_pred Hhcc------CchhHHHHHhcCChHHHHHhhcc---CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhh
Q 000124 110 VLCK------DEDLRLKVLLGGCIPPLLSLLKS---ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180 (2138)
Q Consensus 110 ~Ls~------~e~~r~~v~~~G~Ip~Lv~LL~s---ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL 180 (2138)
+... .++.+..+. ..++..+.. .+..+|.+.+.+|..++....+.. =.+.++.|++.+
T Consensus 84 ~~i~~~w~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~--------Wp~~l~~l~~~~ 150 (963)
T 2x19_B 84 IKISRYWSDIPTDQYESLK-----AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA--------WPCAVADMVRLF 150 (963)
T ss_dssp HHHHHCGGGSCGGGHHHHH-----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT--------STTHHHHHHHHH
T ss_pred HHHHhCHHhCCHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc--------cchHHHHHHHHH
Confidence 7642 233444443 233333333 368899999999999986321100 025788899988
Q ss_pred CCCCC--CChhHHHHHHHHHHHHhcCC-Cc-----hhHHHHH--hCcHHHHH----HhhccCC--HHHHHHHHHHHHHHH
Q 000124 181 NPKNK--QDNVVQGFVTGALRNLCGDK-DG-----YWRATLE--AGGVDIIV----GLLSSDN--AAAQSNAASLLARLM 244 (2138)
Q Consensus 181 ~s~s~--ed~~V~e~Al~aL~nLcs~~-e~-----r~~aI~e--~GGI~~Lv----~lL~s~s--~evq~~A~~aL~nLs 244 (2138)
.+... .+....+.++.+|..++..- +. +...+.+ ...++.++ ..+...+ ..+...+++++....
T Consensus 151 ~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi 230 (963)
T 2x19_B 151 QAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV 230 (963)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 65110 12345678888888887421 00 1011110 01233333 3443322 247777777775544
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-----HHHHHHh--cCCHHHHHHhhcCCchhh
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-----AKKAVVA--ADGVPVLIGAIVAPSKEC 317 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-----~Rk~i~e--~ggL~~LI~LL~s~s~e~ 317 (2138)
. ... ........++.+++.+. +...+..+..++..+...... .-..+.. -+-.+.+...+...+.+.
T Consensus 231 ~--~~~-~~~~~~~ll~~l~~~l~---~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 231 Q--LEV-PLQDCEALIQAAFAALQ---DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp T--SSC-CGGGTHHHHHHHHHHTT---STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred c--CCC-CcccchHHHHHHHHHhC---CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHH
Confidence 2 111 11123456777777764 346788899999888764211 1111110 000111111111111110
Q ss_pred hhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCC--CCCcccchhhHHHHH
Q 000124 318 MQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG--VDDEPFDARQIEDIL 395 (2138)
Q Consensus 318 mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~--~~~~~~~~~~Ie~~L 395 (2138)
.......+..+....... + .............+..+.. +.+++. ...+.+.. .+..+.
T Consensus 305 ---------~~~~~~l~~~~~~~~~~~---l---~~~~~~~~~~~~~l~~ll~----~~~~~~~~~~~~~v~~-~~l~fw 364 (963)
T 2x19_B 305 ---------SHGICRIAVALGENHSRA---L---LDQVEHWQSFLALVNMIMF----CTGIPGHYPVNETTSS-LTLTFW 364 (963)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH---H---HHCGGGHHHHHHHHHHHHH----HHTCSSCTTTTCGGGG-GGHHHH
T ss_pred ---------HHHHHHHHHHHHHHhHHH---H---HcCccchHHHHHHHHHHHH----HHcCCCCCCchhhhhh-hhHHHH
Confidence 011111111111000000 0 0000000000011110000 000100 00000111 111111
Q ss_pred HHHcC----CCCh--hHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCH---------------HHHHHHHH
Q 000124 396 VMLLK----PHDN--KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA---------------DVREYLIL 454 (2138)
Q Consensus 396 V~LL~----s~~~--e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~---------------evq~~Aa~ 454 (2138)
..+.+ .... ...+......+. ..++.++..+...++ +.+..+..
T Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~~~~l~---------------~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 365 YTLQDDILSFEAEKQAVYQQVYRPVYF---------------QLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHH---------------HHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHH
Confidence 11111 0000 000000000000 112222222221111 12344445
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHh----cCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hh
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLL----GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EA 527 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL----~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks 527 (2138)
+|..++...+.. +. .-.++.+.+.+ .+.+...++.++.+++.++....+.. ...++.++..+ .+
T Consensus 430 ~L~~~~~~~~~~---~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~ 500 (963)
T 2x19_B 430 TLMYVYEMLGAE---LL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISI 500 (963)
T ss_dssp HHHHHHHHHTHH---HH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCC
T ss_pred HHHHHHHHccHH---HH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCC
Confidence 555444321100 00 11123333444 45577889999999999987533211 12234444443 23
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHH
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLAL 600 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~L 600 (2138)
+++.++..++++++.++..-......+ ...++.++..+.+ +.++..|+.++.+++.... ...+..+.++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 478899999999998865211111211 4566777776654 8999999999999996532 2344555666
Q ss_pred hcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhh----cCC-CHHHHHHHH---HHHHHHhhc-C-
Q 000124 601 LLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL----NSS-NEENQEYAA---SVLADLFSM-R- 668 (2138)
Q Consensus 601 L~~~--d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LL----ks~-s~evre~Aa---~ALanL~s~-~- 668 (2138)
+... +.+.+..+.++++.++...+ .+..... -...++.+...+ +.. +++.+.... ..|..+... .
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6642 45678888999998875433 2222211 112344444433 222 555555333 333333321 0
Q ss_pred --hh---------------h--hhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChh
Q 000124 669 --QD---------------I--CGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727 (2138)
Q Consensus 669 --~e---------------~--r~~Ive~GaV~~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~ 727 (2138)
+. . ...-.....++.+.+++.. ++..+.+.++.++..+.....+ .. ...++
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~--~~------~~~l~ 725 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD--DF------APMVP 725 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS--TT------GGGHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc--cc------cccHH
Confidence 00 0 0011122344445555532 4678888899999887652222 11 11344
Q ss_pred hHHhhh----hc-CCHHHHHHHHHHHHHhh----CCchHHHHHHh--cCcHHHHHHHHh---CCCHHHHHHHHHHHHHhh
Q 000124 728 PLIKLA----KT-SSIDAAETAVAALANLL----SDPDIAAEVLL--EDVVSALTRVLA---EGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 728 ~Lv~LL----~s-~s~~Vr~eAl~ALaNLa----~~~e~r~~Ii~--~g~L~~LV~LL~---~~~~~Vr~~Aa~AL~nL~ 793 (2138)
+++..+ .. .... .+..+..+. .++.....+.. ...+.....++. ..++++++.....+..+.
T Consensus 726 ~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~ 801 (963)
T 2x19_B 726 QLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQAL 801 (963)
T ss_dssp HHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHH
Confidence 444432 22 1222 223333332 22211111111 112333333333 246999999999999999
Q ss_pred hcCCCchhhhhhhh-hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 794 KHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 794 ~~~~~~d~i~~~i~-~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
...+. .+..... -...+..++..+. ..+......++..+..+..
T Consensus 802 ~~~~~--~~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 802 KRKPD--LFLCERLDVKAVFQCAVLALK--FPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHCGG--GGGCTTSCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHGG
T ss_pred HhCcH--HHcCCcccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence 87542 1211111 1334455566664 2344567778888877764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.098 Score=72.20 Aligned_cols=539 Identities=11% Similarity=0.070 Sum_probs=257.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----------cHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 000124 43 KFLEQLHANMSSPQERELITMRILTIAKA-----------KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2138)
Q Consensus 43 qlLe~L~~~s~s~~ere~AL~~L~~L~~~-----------~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~L 111 (2138)
.++..+...+.+...|..|.-.|.+.... +++.|..|.+ .++..+.+.+..++...+.++..+
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~------~ll~~l~~~~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK------EIVPLMISLPNNLQVQIGEAISSI 112 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH------HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445545556677899999999987643 3445555543 345555556688999999999888
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCC--CChhhHHHH--HHcCcHHHHHHh-------h
Q 000124 112 CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS--DDHVGMKIF--VTEGVVPTLWDQ-------L 180 (2138)
Q Consensus 112 s~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~n--kd~~gre~I--veaG~Ip~Ll~L-------L 180 (2138)
+..+-.. .=-+.++.|++.+.++++..+..++.+|..++..-.. +++..+..+ +-....+.++++ +
T Consensus 113 a~~d~p~---~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l 189 (960)
T 1wa5_C 113 ADSDFPD---RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQI 189 (960)
T ss_dssp HHHHSTT---TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhCcc---chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432110 0025678899999887778889999999999863110 111112111 112234444443 3
Q ss_pred CCCCCCCh------hHHHHHHHHHHHHhcCCCchhHHHHH--hCcHHHHHHhhccC------C---------HHHHHHHH
Q 000124 181 NPKNKQDN------VVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD------N---------AAAQSNAA 237 (2138)
Q Consensus 181 ~s~s~ed~------~V~e~Al~aL~nLcs~~e~r~~aI~e--~GGI~~Lv~lL~s~------s---------~evq~~A~ 237 (2138)
..+..... .+...++.++.++...+-.. .+.+ ...++.+...+... + ..++..++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~ 267 (960)
T 1wa5_C 190 TANENNKASLNILFDVLLVLIKLYYDFNCQDIPE--FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ 267 (960)
T ss_dssp TCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH--HHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHH
Confidence 33221111 12233566666665432111 1111 11234444444321 0 24677888
Q ss_pred HHHHHHHhhcCCCcchhhccchHHHHHHHhcc----CCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCC
Q 000124 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ----NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313 (2138)
Q Consensus 238 ~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s----~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~ 313 (2138)
.+|..+....++.-.. .-...+...+..+.. ..+..+...+...+..+... ...++.+...+-++.+++
T Consensus 268 ~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~----- 340 (960)
T 1wa5_C 268 ELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITE----- 340 (960)
T ss_dssp HHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHH-----
Confidence 8888877432211000 011233333444421 22334455555555444332 211111100001111110
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH
Q 000124 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393 (2138)
Q Consensus 314 s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~ 393 (2138)
.+....+.+. ....+.+.. .-+.
T Consensus 341 -----------------------------------------------------~~i~~~m~~~---~~d~e~w~~-dp~e 363 (960)
T 1wa5_C 341 -----------------------------------------------------QIILPNVTLR---EEDVELFED-DPIE 363 (960)
T ss_dssp -----------------------------------------------------HTHHHHHSCC---GGGTTTTTT-CHHH
T ss_pred -----------------------------------------------------HHhHHhcCCC---HHHHHHHhc-CHHH
Confidence 0000001110 000001111 0111
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc------cCCHHHHHHHHHHHHHhhhccchhh
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILSLTKLCRREVGIW 467 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~------sss~evq~~Aa~aL~~Ls~~s~~~~ 467 (2138)
++..-++..+.+..|..+...|..++..-. +.+ -...++.+...+. +.+...++.|..+++.++.+.....
T Consensus 364 ~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~ 440 (960)
T 1wa5_C 364 YIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITN 440 (960)
T ss_dssp HHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBT
T ss_pred HHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhcccc
Confidence 111111112222356666666666543321 111 0112233333343 3456677788888888874311000
Q ss_pred HHhh---h-chhHH----HHHHHhcCC---chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHH
Q 000124 468 EAIG---K-REGIQ----LLISLLGLS---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVA 536 (2138)
Q Consensus 468 ~~I~---e-~ggIp----~LV~LL~s~---d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~A 536 (2138)
.... . ....+ .++..+.+. ++.+|..++++++.++..-. .. .-...++.++..|.+.+..++..|
T Consensus 441 ~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~--~l~~~l~~l~~~L~d~~~~V~~~A 516 (960)
T 1wa5_C 441 AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA--QLIELMPILATFLQTDEYVVYTYA 516 (960)
T ss_dssp TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH--HHHHHHHHHHHHhCCCChhHHHHH
Confidence 0000 0 01112 233344555 78899999999999986421 11 123356778888888889999999
Q ss_pred HHHHHHHhcCCh-------h-HHHHHHH--cCCcchhhhccccCC---hh--HHHHHHHHHHHHHHhhc-------hhhH
Q 000124 537 AHVLWILCCHSE-------D-IRACVES--AGAVPAFLWLLKSGG---PK--GQDASAMALTKLIRAAD-------SATI 594 (2138)
Q Consensus 537 a~aL~nLs~~sd-------~-~r~~I~e--~GaI~aLv~LLkS~~---~e--vq~~Aa~AL~nLs~~~e-------~~aI 594 (2138)
+.+|.+++...+ . .+..+.. ...++.|+.++...+ +. ....+..++..+..... ...+
T Consensus 517 ~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~ 596 (960)
T 1wa5_C 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL 596 (960)
T ss_dssp HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH
T ss_pred HHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999976321 1 0111100 123344455555531 11 23466666666654321 1233
Q ss_pred HHHHHHhc----C-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 595 NQLLALLL----G-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 595 ~~Li~LL~----~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
+.|+..+. + +++.....+.++++.+.... .++.... .....++.+...++....+..+.+..++..+..
T Consensus 597 ~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~-~~~~~~~--~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 597 AQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT-QRQNLPL--LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS-CGGGHHH--HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CcchHHH--HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 44444443 2 23345566788888876541 1111111 123356777777776666667777777777664
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00037 Score=79.39 Aligned_cols=212 Identities=14% Similarity=0.125 Sum_probs=159.2
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.+.+..|+.++...|+.++.+++.+|..+-...++......-...++.++.++++.+..+.-.|..+|..|-.+.+--.+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34677899999999999999999999999875444333333445899999999999999999999999999764433222
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.+. -.+.+|..+.+++++-.+..++..|+.+.-. ...+.+..+..|+.+.+..++..+..++-++++...+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~- 188 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT- 188 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG-
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH-
Confidence 221 2356788888999999999999999999221 135688899999999999999999999998877655444332
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh--------ccCCHHHHHHH
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL--------TSNTQMVATQS 699 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL--------~dgs~~Vk~~A 699 (2138)
+.+.-+-.++++.++.+++.|..++..+.+. | . .++.++.+.+++ ..|.|.++..|
T Consensus 189 -----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-p-i-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 189 -----LILDEIPSLLQNDNEFIVELALDVLEKALSF-P-L-----LENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp -----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-C-C-----CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-c-c-----cHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 3467777899999999999999999999873 2 2 244555554443 35666666554
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0014 Score=80.37 Aligned_cols=277 Identities=14% Similarity=0.031 Sum_probs=156.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc
Q 000124 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2138)
Q Consensus 436 ~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a 515 (2138)
.++.++.+.+...++-.--++..++...++. | =++..+.+=++++|+-+|-.|+++|+++.. ++.- .
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~-----~ 138 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML-----Q 138 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH-----H
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH-----H
Confidence 3567888989888888888888877663332 1 246778888899999999999999999986 2221 1
Q ss_pred CCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000124 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2138)
Q Consensus 516 GaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~ 595 (2138)
...+.+.+.|.+.++.+|..|+-+...|.....+. + .+.+..+-+++.+.++.++.+|..+|..+... +...+.
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~ 212 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVS 212 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHH
Confidence 24566777888899999999999999997655442 2 35777888899999999999999999999754 333556
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000124 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2138)
Q Consensus 596 ~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~I 675 (2138)
.|+.-+....-..+..-+..+..+.......+. -.....++.+...+++.++.+...|++++..+......
T Consensus 213 kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----- 283 (355)
T 3tjz_B 213 KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----- 283 (355)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC------------
T ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-----
Confidence 666666543111111112223322222221100 01233577788888999999999999999988652221
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 676 ve~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
....++..|..++.+.++.+|-.|.+.|..+....|. .. . ..-..+.+++.+++..+..-|..+|
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v----~--~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AV----T--ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HH----H--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 1134567788889999999999999888888764443 11 1 1334467778888777766665555
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00018 Score=75.53 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=85.4
Q ss_pred ceEEEEEecccccccc--c-CCCCceEEEEecCCCC---ccc-cccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLKQT--M-GTTNAFCRLTIGNGPP---RQT-KVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~t-~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
+.|.|-..+.+.-... . -.-||||.+.+|..-. -|| -.-+|+..|+||++|+--+.+ |..|+|.|+.+..
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~ 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK---GRVMQIIVKGKNV 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS---SCEEEEEEECSSC
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC---CeEEEEEEEcCCC
Confidence 4577777777653211 0 2469999999976633 467 667889999999999998885 5899999995544
Q ss_pred CCCcccceEEEEeccee-----ecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2083 FGKSTLGKVTIQIDKVV-----TEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2083 ~~k~~~g~~~~~~~~v~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.+..|+|++.+++ .+|....+..|.|. +++.+.++|.--
T Consensus 87 ---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------Gkl~v~i~~~~e 131 (138)
T 2enj_A 87 ---DLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------GRMLMNARYFLE 131 (138)
T ss_dssp ---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------CEEEEEEEECCC
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEEEe
Confidence 99999999999999 56888888999988 556688898643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0024 Score=78.23 Aligned_cols=269 Identities=13% Similarity=0.109 Sum_probs=153.5
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh
Q 000124 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2138)
Q Consensus 593 aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r 672 (2138)
....+++++.+.+...+....-++..++.. .++.+ + ++..|.+=++++++-+|-.|.++|+++.. ++..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i---L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI---I----VTSSLTKDMTGKEDSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG---G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH---H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH
Confidence 345678899998888887766666555433 11111 1 46777888888999999999999999986 3333
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+ ...+.+.+.+.|.++.||..|+.+..+|....++ ++ .+++..+-+++.+.++.|+..|+.+|..+.
T Consensus 138 ~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 138 Q-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3 3456677888999999999999999999863332 12 368999999999999999999999999887
Q ss_pred CCchHHHHHHhcCcHHHHHHHHhCC---CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000124 753 SDPDIAAEVLLEDVVSALTRVLAEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2138)
Q Consensus 753 ~~~e~r~~Ii~~g~L~~LV~LL~~~---~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~ 829 (2138)
.++. ..+..|+.-+.++ ++-.+-.-.+.+..++...+ +. .....++.+...++. .+....
T Consensus 205 ~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~-----~~~~~~~~l~~~L~~--~~~aVv 267 (355)
T 3tjz_B 205 KNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GS-----RDSPLFDFIESCLRN--KHEMVV 267 (355)
T ss_dssp TTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCC--SSHHHH
T ss_pred hhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hh-----hHHHHHHHHHHHHcC--CChHHH
Confidence 6432 1455566655553 46556555555555554320 00 112234455555553 344568
Q ss_pred HHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCc-hh------hhhhhc
Q 000124 830 ADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA-VL------GDFLMA 902 (2138)
Q Consensus 830 ~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~-~~------~~~~~~ 902 (2138)
.+|..++-.+...... .......+|..++.++++.+|--|+..|..+...+|. ++ .+.+.+
T Consensus 268 yEa~k~I~~l~~~~~~------------~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 268 YEAASAIVNLPGCSAK------------ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHHHHHhccCCCHH------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 8888887776542111 0122345677788889999999999999999888876 33 556677
Q ss_pred ccccHHHHHHHH
Q 000124 903 RSSSIGALADRI 914 (2138)
Q Consensus 903 ~~~~i~~La~~i 914 (2138)
..+.|+.+|--.
T Consensus 336 ~n~sI~t~Aitt 347 (355)
T 3tjz_B 336 ANRSIATLAITT 347 (355)
T ss_dssp ------------
T ss_pred CcHhHHHHHHHH
Confidence 777777776543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.34 E-value=1.2 Score=61.30 Aligned_cols=518 Identities=10% Similarity=0.065 Sum_probs=254.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCC------CcchhhccchHHHHHH
Q 000124 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGD------SIPTVIDSGAVKALVQ 265 (2138)
Q Consensus 194 Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e------~r~~l~~~GaL~~LL~ 265 (2138)
|-..|.++-..+ |....|+..+.+. +..+|..|+-.|-|....+-. ....-.....=..++.
T Consensus 23 Ae~~L~~~~~~p----------~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~ 92 (960)
T 1wa5_C 23 SERNLRQLETQD----------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVP 92 (960)
T ss_dssp HHHHHHHHHTST----------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC----------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHH
Confidence 777777664322 2455677777543 568899999999888742211 1111111122334555
Q ss_pred HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCch---
Q 000124 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP--- 342 (2138)
Q Consensus 266 LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis--- 342 (2138)
.+... +..+|.....++..++.. .-+. .....++.|+..+.+++.. .+..++.+|..++....
T Consensus 93 ~l~~~-~~~ir~~l~~~ia~ia~~-d~p~---~Wp~ll~~L~~~l~s~~~~---------~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 93 LMISL-PNNLQVQIGEAISSIADS-DFPD---RWPTLLSDLASRLSNDDMV---------TNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp HHHHS-CHHHHHHHHHHHHHHHHH-HSTT---TCTTHHHHHHTTCCSSCTT---------HHHHHHHHHHHHHGGGTTSC
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHh-hCcc---chhHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHHHhh
Confidence 55433 367888888777777653 1110 1256677788877665422 34456666666553211
Q ss_pred ------------------hHHHHh---hhhcCCCCch----hhHHHHHHHHHHHHHHhhcCCCCCCcccch--hhHHHHH
Q 000124 343 ------------------ALVVYL---GELSQSPRLA----APVADIIGALAYALMVFEQKSGVDDEPFDA--RQIEDIL 395 (2138)
Q Consensus 343 ------------------~LI~~L---~elL~~~~ss----~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~--~~Ie~~L 395 (2138)
+++..+ ...++..... +.....+...+.....+. ... ....+.+ ....+.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~-~~~-~~~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFN-CQD-IPEFFEDNIQVGMGIF 236 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHH-SSC-CCHHHHHTHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-hcc-chHHHHHHHHHHHHHH
Confidence 011111 1123332211 111111111111111111 000 0111111 1222444
Q ss_pred HHHcCCC------C---h-----hHHHHHHHHHHHHhhcC-ch-hHHHHhhhchHHHHHHHHc-----cCCHHHHHHHHH
Q 000124 396 VMLLKPH------D---N-----KLVQERVLEAMASLYGN-IF-LSQWVSHAEAKKVLIGLIT-----MATADVREYLIL 454 (2138)
Q Consensus 396 V~LL~s~------~---~-----e~vr~~Aa~AL~~L~~n-~~-~~~~L~e~~gI~~LV~LL~-----sss~evq~~Aa~ 454 (2138)
..++... + . +.++.+++.++..+... ++ ....+ ...++..+..+. ..++.+...+..
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 314 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLS 314 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4444321 1 0 23567777777766432 11 11111 123444555553 345778888888
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHH-----HHhc-----------------------CCchhhHHHHHHHHHHHhhcCc
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLI-----SLLG-----------------------LSSEQHQEYAVQLIAILTEQVD 506 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV-----~LL~-----------------------s~d~~Vr~~Aa~aL~nLa~~s~ 506 (2138)
.|..++.. +..+..+.....++.++ ..+. +.....|..|..+|..|+...+
T Consensus 315 fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~ 393 (960)
T 1wa5_C 315 FLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE 393 (960)
T ss_dssp HHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc
Confidence 88887654 22222221113333333 2221 1112467788888888887432
Q ss_pred hhHHHHHhcCCchHHHHHhh------hCCHHHHHHHHHHHHHHhcCCh-------------hHHHHHHHcCCcchhhhcc
Q 000124 507 DSKWAITAAGGIPPLVQLLE------AGSQKAREVAAHVLWILCCHSE-------------DIRACVESAGAVPAFLWLL 567 (2138)
Q Consensus 507 e~r~~I~~aGaIp~LV~LLk------s~d~~vre~Aa~aL~nLs~~sd-------------~~r~~I~e~GaI~aLv~LL 567 (2138)
+ .+. .-.++.+.+.+. +.+...|+.|..+++.++.... ....++. ..++..+
T Consensus 394 ~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~-----~~v~p~l 464 (960)
T 1wa5_C 394 V---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT-----KEIAPDL 464 (960)
T ss_dssp H---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH-----HHTHHHH
T ss_pred h---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH-----HHhHHHh
Confidence 1 111 012233333344 3467789999999999964211 1111110 0111222
Q ss_pred ccC---ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH
Q 000124 568 KSG---GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2138)
Q Consensus 568 kS~---~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~ 644 (2138)
.+. .+.+|..++++++.++.. . .++... ..++.++.
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~----------------------------------~-~~~~l~------~~l~~l~~ 503 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQ----------------------------------L-TKAQLI------ELMPILAT 503 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGG----------------------------------S-CHHHHH------HHHHHHHH
T ss_pred cCCCCCCceehHHHHHHHHHHHhh----------------------------------C-CHHHHH------HHHHHHHH
Confidence 344 667777777777776532 1 011111 13677777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCh-------hh-hhhhhh--CCCHHHHHHHhccCC---HH--HHHHHHHHHHHhcCC
Q 000124 645 VLNSSNEENQEYAASVLADLFSMRQ-------DI-CGSLAT--DEIVNPCMRLLTSNT---QM--VATQSARALGALSRP 709 (2138)
Q Consensus 645 LLks~s~evre~Aa~ALanL~s~~~-------e~-r~~Ive--~GaV~~Lv~LL~dgs---~~--Vk~~AA~ALanLa~s 709 (2138)
.+.+++..++..|+.+|.+++.... +. +..+.. ...+..|..++.... +. ....+..+|..+...
T Consensus 504 ~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 504 FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 7888889999999999999987311 21 222211 245566666776641 11 234566666665431
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhc-----CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKT-----SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s-----~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr 782 (2138)
..+ .... .-...++.|+..+.. .+...+..++.+++.++. +++....+ .+..+|.+...+.....+..
T Consensus 584 ~~~--~~~p--~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~ 658 (960)
T 1wa5_C 584 SED--SIQP--LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFI 658 (960)
T ss_dssp HTT--TTGG--GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTH
T ss_pred HHH--hhhh--HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhH
Confidence 111 1111 011244445444432 356677678888888765 33333332 34567888888877666677
Q ss_pred HHHHHHHHHhhhc
Q 000124 783 KNASRALHQLLKH 795 (2138)
Q Consensus 783 ~~Aa~AL~nL~~~ 795 (2138)
..+..+++.+...
T Consensus 659 ~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 659 PYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=74.00 Aligned_cols=107 Identities=14% Similarity=0.262 Sum_probs=81.2
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCC---Cccc-cccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP---PRQT-KVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~t-~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
+.|.|-..+.+.= ...=-.-||||.+.++..- .-|| -.-+|+.+|.||++|+--+.+ |..|+|.|+.+..
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT---TCEEEEEEEEETT-
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC---CEEEEEEEEcCCC-
Confidence 4577777776642 2110136999999996433 2265 667889999999999999885 5899999996555
Q ss_pred CCcccceEEEEeccee-----ecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2084 GKSTLGKVTIQIDKVV-----TEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2084 ~k~~~g~~~~~~~~v~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
+.+..|+|++.+++ .+|....+..|.|. +++.+.++|
T Consensus 82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------Gkl~~~i~~ 123 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMSVQY 123 (126)
T ss_dssp --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEE
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEE
Confidence 99999999999999 56888888899987 555577776
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0034 Score=73.31 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=132.6
Q ss_pred hhhccccCChhHHHHHHHHHHH-HHHh-h-------c-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhc--chH-H
Q 000124 563 FLWLLKSGGPKGQDASAMALTK-LIRA-A-------D-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMAL--QED-L 628 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~n-Ls~~-~-------e-~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~--~~d-~ 628 (2138)
+.+.+.+.++.-|..+...|.. +... + + .+.+..|.+.+ ++.+..++..++++++.++.... .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456788899999999999999 7633 1 1 34677888888 68888889999999999985433 111 1
Q ss_pred HHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.. .-.++.++..+++....+++.+..+|..++...++....-.-...++.|...+++.++.+|..+...|..+..
T Consensus 101 y~-----~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YV-----SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HH-----HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11 1258899999999999999999999999987422111000012467788889999999999999999999986
Q ss_pred CCCcccchhh-hHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 709 PTKTKTTNKM-SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 709 s~~~~d~~r~-~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
..+..+ ... ......+++.|.+++.+.+.+||..|..+|+.+.
T Consensus 176 ~~~~~~-~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEKDGY-STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCCSCS-HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCcc-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 322100 111 1112568899999999999999999999998875
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=75.56 Aligned_cols=186 Identities=8% Similarity=0.101 Sum_probs=131.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hhhccchhhHHhhh-chhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHH-H
Q 000124 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGK-REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWA-I 512 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~-Ls~~s~~~~~~I~e-~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~-I 512 (2138)
+...+.+.+...|..+...|.. +..+.+.......+ ...+..|...+ +..+..++..|+.+|+.|+.+-...... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3455678889999999999998 87543322210111 23467788888 7889999999999999998632201111 2
Q ss_pred HhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--
Q 000124 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-- 590 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-- 590 (2138)
.....+|.++..+++..+.+++.+..+|..+...-+.....-.=...++.|+..+++.++.++..+..+|..+.....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223467888898998899999999988888865221000000001234566778888899999999999999986532
Q ss_pred ---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 591 ---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 591 ---------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
...+|.|.+++.+.+.+++..+.++++.+...
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988644
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.16 E-value=1.9 Score=59.73 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC---CHHHHHHHHHHHHHhcc-
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLCK- 113 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~---~~evr~~Aa~~L~~Ls~- 113 (2138)
+..|.+.++...+...++..|.+|-.+|..+-..+ ++......+|... ++.+|.-|+.+|.+...
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 46688888766666678889999999998876654 4555566667553 68999999999965433
Q ss_pred -Cch----hHHHHHhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCC
Q 000124 114 -DED----LRLKVLLGGCIPPLLSLLK-SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2138)
Q Consensus 114 -~e~----~r~~v~~~G~Ip~Lv~LL~-sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed 187 (2138)
.++ .+..+. .-.+..+.+.-. .++..++.+.+.+|..+.....+.. =.+.++.+++++..++ .
T Consensus 74 l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~--------Wp~~i~~l~~~~~~~~-~- 142 (980)
T 3ibv_A 74 WNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN--------WNDFFASLQGVIAASS-Q- 142 (980)
T ss_dssp CCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT--------CTTHHHHHHHHHHHHC-C-
T ss_pred CChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc--------CchHHHHHHHHhcCCC-h-
Confidence 223 333332 122233333111 2467789999999988875311100 0247777888876533 1
Q ss_pred hhHHHHHHHHHHHHhcCC---C--------ch----hHHHHHhC---cHHHHHHhh----ccCCHHHHHHHHHHHHHHHh
Q 000124 188 NVVQGFVTGALRNLCGDK---D--------GY----WRATLEAG---GVDIIVGLL----SSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 188 ~~V~e~Al~aL~nLcs~~---e--------~r----~~aI~e~G---GI~~Lv~lL----~s~s~evq~~A~~aL~nLs~ 245 (2138)
.......+++|..++..- . .| +..+.+.. .++.+..+| .+.+++++..++.+|.....
T Consensus 143 ~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 143 SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 123445566666443320 0 11 12232220 133333333 33667788888888877663
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
- -....+.+...++.+...+. +...+..|.++|..+..+
T Consensus 223 w--i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 223 W--ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNK 261 (980)
T ss_dssp T--SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHS
T ss_pred h--cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHc
Confidence 1 11233456678888888886 368899999999999775
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.71 Score=63.62 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---c--cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhc
Q 000124 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---T--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAE 723 (2138)
Q Consensus 649 ~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL---~--dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~ 723 (2138)
.++..++.+..++..++.+-.+.. ...++.++.++ . +.++.+|..++++++.++.-... .. . .-.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~--~~-~--~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME--NP-A--YIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------CHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc--CH-H--HHH
Confidence 577899999999999976422211 12334444433 3 45889999999999998752111 00 0 011
Q ss_pred CChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHH--hcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcC
Q 000124 724 GDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 724 G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii--~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.+++.|+..++ +.|+..|+.++.+++.+ .+..+. -+..+..+..++..+ +...+..+..+++.+....
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 24555666663 67899999999999842 222222 234556666777763 5789999999999998754
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.098 Score=57.66 Aligned_cols=213 Identities=14% Similarity=0.185 Sum_probs=150.1
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDI 550 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~ 550 (2138)
+...+..++.+|.++-..+|.+|+..+.+++...++.... .+..|.-+++ +..-......+.+++.++..+.+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 4556788999999888899999999999998754443222 2334444544 445555556678888887644432
Q ss_pred HHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000124 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-AD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 551 r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d 627 (2138)
- .+.+|.+..-.+-+++.++-+...+|..+... +. ..+...+..++.+.+..-+..+..-++.+. ..+..
T Consensus 105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG--en~~~ 177 (253)
T 2db0_A 105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMG--ENSFK 177 (253)
T ss_dssp H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC--TTTHH
T ss_pred H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh--ccCcc
Confidence 2 23567777777889999999999999999865 21 345677888888666544444433333221 12222
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
.+ ...++.|..++.+.++-+|..|+.+|.+++..++..|..+ ..-++-+.|.++.++...-.+|..+.
T Consensus 178 yv------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 178 YV------NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HH------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cc------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22 3368999999999999999999999999999888866654 33455678888888888888888876
Q ss_pred C
Q 000124 708 R 708 (2138)
Q Consensus 708 ~ 708 (2138)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.044 Score=74.96 Aligned_cols=289 Identities=15% Similarity=0.104 Sum_probs=185.5
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch-hHHHHHhcCCch
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGGIP 519 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e-~r~~I~~aGaIp 519 (2138)
+..++......++..+..+..++... .....+.+..|...+...... +.|+.++..|+..... .....+-.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~ 98 (986)
T 2iw3_A 23 LSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVP 98 (986)
T ss_dssp HTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHH
Confidence 44434455667777777766542111 112236677888888776555 8999999999853321 112233335778
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhh-c------
Q 000124 520 PLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAA-D------ 590 (2138)
Q Consensus 520 ~LV~LLks~d~~vre~Aa~aL~nLs~~-sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~-e------ 590 (2138)
.++..+.+....+|..|..++..+... +...- ...+|.|+..+++. ....+..|..++..|.... +
T Consensus 99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~ 173 (986)
T 2iw3_A 99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM 173 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 888888888889999888777777542 22111 23577888777655 5889999999999998653 2
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
.+.||.+.+.+.+..++|+..+..++..++...++.|. ...++.|+..+.+++. +.+ ++..|..-+.- .+
T Consensus 174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~~-~~~-~~~~l~~~tfv-~~ 243 (986)
T 2iw3_A 174 PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPTE-VPE-TVHLLGATTFV-AE 243 (986)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTTH-HHH-HHHHHTTCCCC-SC
T ss_pred cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChhh-hHH-HHHHhhcCeeE-ee
Confidence 46789999999999999999999999988877776653 3368999998877643 333 34333332220 00
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALA 749 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALa 749 (2138)
.- .-.=.=.+|-|.+-|++.+..+++.++-.+.|+++-... ..-..-.-...+|.|.+.... .++++|+-|..|+.
T Consensus 244 v~-~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 244 VT-PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp CC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred ec-chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 00 000011345666677888999999999999999982221 222222223344444444433 68999998888877
Q ss_pred Hh
Q 000124 750 NL 751 (2138)
Q Consensus 750 NL 751 (2138)
.|
T Consensus 321 ~l 322 (986)
T 2iw3_A 321 TL 322 (986)
T ss_dssp HH
T ss_pred HH
Confidence 77
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.13 Score=64.81 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=194.2
Q ss_pred cCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCch---hHHHH-HhcCC-hHHHHH-hhccCCHHHHHHHHHHHHHhhcC
Q 000124 83 AQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED---LRLKV-LLGGC-IPPLLS-LLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 83 aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~---~r~~v-~~~G~-Ip~Lv~-LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
..++..++.+|+. .+.++..+.+.++..|..++. .+..+ ....- ...+.. .+..+++-....+..++.-++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 5678999999985 688999999999988876543 33333 33322 222333 33345666677777776776654
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCc-HHHHHHhhcc----C--
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSS----D-- 228 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG-I~~Lv~lL~s----~-- 228 (2138)
+. ++......++... -++..|.... ....+.-+.++|..|...++-|.....+.|. ++.+...+.. .
T Consensus 156 ~~-~~~~~l~~l~~~~---~~~~~L~~~~--~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GL-HNVKLVEKLLKNN---NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TT-CCHHHHHHHHHCH---HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CC-ccHhHHHHHhhhH---HHHHHhcccc--CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 32 2333333333211 2334444321 1223556888898888877665333323332 5555443321 1
Q ss_pred -----------CHHHHHHHHHHHHHHHhhcCCCcchhhccchH--HHHHHHhccCCCHhHHHHHHHHHHHHhhcCH----
Q 000124 229 -----------NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV--KALVQLVGQNNDISVRASAADALEALSSKSI---- 291 (2138)
Q Consensus 229 -----------s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL--~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~---- 291 (2138)
.-+.+..++-++|-|+...+ ....+...+.. ..|+.+++....+.+-+-+..++.|+...++
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~ 308 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 308 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence 24567888899999884322 33444444433 6677777655567888889999999988642
Q ss_pred HH-HHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000124 292 KA-KKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2138)
Q Consensus 292 e~-Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~ 370 (2138)
.. .+.+...++ ..+++.+....- .++.+ .+.|..+ .+.| ..-
T Consensus 309 ~~~~~~~~~~~~-l~~l~~L~~rk~------~Dedl----~edl~~L-----------~e~L-------------~~~-- 351 (480)
T 1ho8_A 309 KVIKQLLLLGNA-LPTVQSLSERKY------SDEEL----RQDISNL-----------KEIL-------------ENE-- 351 (480)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHSSCC------SSHHH----HHHHHHH-----------HHHH-------------HHH--
T ss_pred hHHHHHHHHccc-hHHHHHHhhCCC------CcHHH----HHHHHHH-----------HHHH-------------HHH--
Confidence 11 122222333 334444433110 00001 0111111 0000 000
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHH----HHhhh--chHHHHHHHHcc-
Q 000124 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ----WVSHA--EAKKVLIGLITM- 443 (2138)
Q Consensus 371 ~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~----~L~e~--~gI~~LV~LL~s- 443 (2138)
+. .-...+++...+....-.+ +..-.++..|+ .+.+. ..++.|+.++.+
T Consensus 352 ----~~----------~ltsfDeY~~El~sG~L~W----------SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 352 ----YQ----------ELTSFDEYVAELDSKLLCW----------SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp ----HH----------TCCHHHHHHHHHHHTCCCC----------CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred ----HH----------hcccHHHHHHHHhcCCccc----------CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 00 0001112222211110000 00001112222 12222 246778888873
Q ss_pred ---------CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc
Q 000124 444 ---------ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2138)
Q Consensus 444 ---------ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~ 504 (2138)
.++.+...|+.-++.+.+..|..+..+.+.||=..+++++.++|+++|..|+.++..+-.+
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3577788888999999999888888887888888899999999999999999999887653
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=77.18 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=132.0
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
.++.++++.+|..++..| ....|..+++++++.+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 456788888888887742 123466777888999999888642 12
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhh
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~ 640 (2138)
+.|..++++.++.++..++..+ . .+.+..++++.+..|+..+...+ ..+
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~-------~~~L~~L~~D~d~~VR~~aA~~l---------------------~~~ 149 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P-------LEQLEQMAADRDYLVRAYVVQRI---------------------PPG 149 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C-------TGGGGGGTTCSSHHHHHHHHHHS---------------------CGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C-------HHHHHHHHcCCCHHHHHHHHHhc---------------------CHH
Confidence 4677888999999999988853 1 12466777888888887654311 123
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhH
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I 720 (2138)
.+..+++++++.+|..++.. +. .+.+..+++|.+..||..++.. +
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~---l-------------- 194 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASR---L-------------- 194 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHH---C--------------
T ss_pred HHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHh---C--------------
Confidence 45567888899999988875 11 1335567889999999988864 2
Q ss_pred HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 721 IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 721 ~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
..+.|..++++++..||..++..+. .+.|..+ .+.+..||..|+..|
T Consensus 195 ----~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ----RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ----CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred ----CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1256788899999999999888753 3456666 888999999987654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.11 Score=71.15 Aligned_cols=295 Identities=14% Similarity=0.140 Sum_probs=189.8
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCCh---hHHHHHH
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVE 555 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd---~~r~~I~ 555 (2138)
+++-+...+..-+..++..+.++.......+ ....+.+..|.+.+.+.... +.|+.++..|+.... ...-.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 4444554445556777778887765321111 11124555666666554333 899999999985321 2223332
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHH
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~ 630 (2138)
+.++.++..+.+....++..|..++..+...-. ...+|.|+..+... +...+..++.++..|+... ++.+.
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 467777888888888999988888887776533 34567888878644 5667788888888887543 23332
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
.. -...+|.+.+.+.+..++++..|..++-.+|.. -++... +..++.|++.+.+.+. + -.|+..|+..+
T Consensus 171 ~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t 239 (986)
T 2iw3_A 171 LR--MPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDI---ERFIPSLIQCIADPTE-V----PETVHLLGATT 239 (986)
T ss_dssp HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred Hh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence 22 244678888888888999999999999999872 222221 3567899999988754 2 23466666533
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC---CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~---~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa 786 (2138)
...+...-. =+=.+|.|..-|+..+..++..++-...||+. +|.....+ -+..+|.+.+.... .+|++|+.|.
T Consensus 240 fv~~v~~~~--l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 240 FVAEVTPAT--LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp CCSCCCHHH--HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eEeeecchh--HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHH
Confidence 321010000 01134556667777889999999999999976 45433333 35677888776554 4899999999
Q ss_pred HHHHHhhhc
Q 000124 787 RALHQLLKH 795 (2138)
Q Consensus 787 ~AL~nL~~~ 795 (2138)
+++..|...
T Consensus 317 ~a~~~l~~~ 325 (986)
T 2iw3_A 317 RALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888554
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.096 Score=65.98 Aligned_cols=248 Identities=15% Similarity=0.074 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHHhhhccchhhHHhhhchh--HHHHHHHhcC---------------C--chhhHHHHHHHHHHHhhcC
Q 000124 445 TADVREYLILSLTKLCRREVGIWEAIGKREG--IQLLISLLGL---------------S--SEQHQEYAVQLIAILTEQV 505 (2138)
Q Consensus 445 s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~gg--Ip~LV~LL~s---------------~--d~~Vr~~Aa~aL~nLa~~s 505 (2138)
+.+.+..++.+|..+... +..+..+.+.++ +++++.+++. + ..+.+.+++.+++-|+. +
T Consensus 181 ~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~ 258 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-N 258 (480)
T ss_dssp CHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-S
T ss_pred CCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-C
Confidence 345566777888887776 566666655443 5666544321 1 34567889999999998 4
Q ss_pred chhHHHHHhcCCc--hHHHHHhhhC-CHHHHHHHHHHHHHHhcCCh-----hHHHHHHHcCCcchhhhcccc---CChhH
Q 000124 506 DDSKWAITAAGGI--PPLVQLLEAG-SQKAREVAAHVLWILCCHSE-----DIRACVESAGAVPAFLWLLKS---GGPKG 574 (2138)
Q Consensus 506 ~e~r~~I~~aGaI--p~LV~LLks~-d~~vre~Aa~aL~nLs~~sd-----~~r~~I~e~GaI~aLv~LLkS---~~~ev 574 (2138)
++....+...+.. +.|++.++.. ..++.+.+..+|.||..... ...+++...++ +.+++.+.. +++++
T Consensus 259 ~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl 337 (480)
T 1ho8_A 259 PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL 337 (480)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH
Confidence 5555555555432 5677777765 78999999999999976441 12334433444 445544433 45666
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh--hc-chHHHHhh---hcc--cchhhHHHHhh
Q 000124 575 QDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM--AL-QEDLVQKG---SAA--NKGLRSLVQVL 646 (2138)
Q Consensus 575 q~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~--~~-~~d~v~~~---l~~--~GaI~aLV~LL 646 (2138)
.+........|...-. .-.+..++..+.......- .. .+.+.++- +.+ -..++.|++++
T Consensus 338 ~edl~~L~e~L~~~~~-------------~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL 404 (480)
T 1ho8_A 338 RQDISNLKEILENEYQ-------------ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELL 404 (480)
T ss_dssp HHHHHHHHHHHHHHHH-------------TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5544443333322210 0001122222222211111 11 11222221 122 22478999999
Q ss_pred cC----------CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 647 NS----------SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 647 ks----------~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
++ .++.+..-|+.=++.++...|+.+..+.+.|+=..+++++.+.+++||.+|..|+..+..
T Consensus 405 ~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 405 QAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 74 256677778888888888889888888888998899999999999999999999988753
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.53 E-value=0.8 Score=63.85 Aligned_cols=493 Identities=11% Similarity=0.038 Sum_probs=231.9
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCC-ChhhHHHHHHc
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD-DHVGMKIFVTE 170 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nk-d~~gre~Ivea 170 (2138)
+.+++...|..|-..|..+-..+ ++...+..+|.+ .+..+|..|+..|.+......+. +...+ ..++.
T Consensus 25 ~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~ir~ 94 (1049)
T 3m1i_C 25 FYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGIRN 94 (1049)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHHHH
Confidence 34456667777888887764333 445556666654 58999999999999886421111 12223 23333
Q ss_pred CcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000124 171 GVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF 247 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~ 247 (2138)
..+..+...-..+. ..++.++.....++..+.... ...|. ..++.++..+. .++..++.++.+|..++..-
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHH
Confidence 34444443221100 002456777777777776652 23443 34778888876 45667788888888888421
Q ss_pred CCCcc------------h-hhc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 248 GDSIP------------T-VID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 248 ~e~r~------------~-l~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
.+... . +.. ...+..+...+....+..++..+..++.......+ -..+.+...++.+++.+..
T Consensus 169 ~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC
Confidence 11100 0 111 11233334445434455677777777766544211 1123334445555532221
Q ss_pred CchhhhhhhhhhhhHHHHHHHHHHhhcC-chh---------------HHHHhhh-hcCC-----------CCchh----h
Q 000124 313 PSKECMQGQRGQALQGHATRALANIYGG-MPA---------------LVVYLGE-LSQS-----------PRLAA----P 360 (2138)
Q Consensus 313 ~s~e~mq~~~~~alqe~Al~ALanIsGg-is~---------------LI~~L~e-lL~~-----------~~ss~----~ 360 (2138)
++ .++..|+.||..+.+. +++ .+..+.. ++.. .+... .
T Consensus 247 -~~---------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~ 316 (1049)
T 3m1i_C 247 -SP---------DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQD 316 (1049)
T ss_dssp -SH---------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHH
T ss_pred -CH---------hHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHH
Confidence 11 1666777887776532 111 1111111 1110 11111 1
Q ss_pred HHHHHHHHHHH-HHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhc----CchhHHHHhh--hch
Q 000124 361 VADIIGALAYA-LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG----NIFLSQWVSH--AEA 433 (2138)
Q Consensus 361 ~A~~L~aLa~~-l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~----n~~~~~~L~e--~~g 433 (2138)
.+..+..+... ...+. .+...... -..+.+.+.......+. .+...+..-+..+.. .+..+..... ...
T Consensus 317 l~~~~~~~~~~~~~~~~-~~~~~~~~--l~~~l~~ll~~~~~~d~-~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~L 392 (1049)
T 3m1i_C 317 LAMFLTTYLARNRALLE-SDESLREL--LLNAHQYLIQLSKIEER-ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL 392 (1049)
T ss_dssp HHHHHHHHHHHHHHHHH-SCGGGHHH--HHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CChhhHHH--HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 22222222211 11111 00000000 01233555555555543 366666655555544 2111111100 012
Q ss_pred HHHHHHHHccC-------------------CH---HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc--CCchh
Q 000124 434 KKVLIGLITMA-------------------TA---DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQ 489 (2138)
Q Consensus 434 I~~LV~LL~ss-------------------s~---evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~--s~d~~ 489 (2138)
++.++..+... +. ..+..+..+|..++...+.... .-..+.+-+.+. ..+..
T Consensus 393 v~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~ 468 (1049)
T 3m1i_C 393 RLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWH 468 (1049)
T ss_dssp HHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHH
Confidence 23333333211 00 1233445566665533111100 111233334443 34667
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-----hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-----AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
.++.++.+++.++....+......-...++.|+.+.. .+.+.++..++++++..+..-......+ ...++.++
T Consensus 469 ~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll 546 (1049)
T 3m1i_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLF 546 (1049)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHH
Confidence 8999999999987643222111111123333333322 1234445467788886653111111111 23456677
Q ss_pred hccccCChhHHHHHHHHHHHHHHhhchh-----------hHHHH----HHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAADSA-----------TINQL----LALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~e~~-----------aI~~L----i~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
..+.+.++.++..|+.++.+++...... .++.+ ..++..-+.+......++++.+....
T Consensus 547 ~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 7778888999999999999999763321 12332 33333333334455666777665443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.22 E-value=7.3 Score=54.25 Aligned_cols=492 Identities=10% Similarity=0.077 Sum_probs=228.4
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc-----CHHHHHHHHhc
Q 000124 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIKAKKAVVAA 300 (2138)
Q Consensus 226 ~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~-----s~e~Rk~i~e~ 300 (2138)
-+++.+.|..|-..|.++- .++ ++...+..++.++.+..+|-.|+..|.+...+ +++.|..+.
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~-~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir-- 93 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQ-DNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR-- 93 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHH-HST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH--
T ss_pred hCCChHHHHHHHHHHHHHH-hCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH--
Confidence 3445567777877777664 222 34555666676566789999999999988653 345555554
Q ss_pred CCHHHHHHhhcCCc--hhhhhhhhhhhhHHHHHHHHHHhh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHH
Q 000124 301 DGVPVLIGAIVAPS--KECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIGALAYAL 372 (2138)
Q Consensus 301 ggL~~LI~LL~s~s--~e~mq~~~~~alqe~Al~ALanIs-----Ggis~LI~~L~elL~~~~s-s~~~A~~L~aLa~~l 372 (2138)
..|+.++.+.. ....+ ....++.....+++.+. +.-+.++..+.+.++.... .+..-.++..++...
T Consensus 94 ---~~ll~~l~~~~~~~~~~~--~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 94 ---NFVVGMIISMCQDDEVFK--TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp ---HHHHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCccccch--hhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 23444433211 00000 00113344444444443 2234466666666642211 122334444444332
Q ss_pred HHhhcCCCCCC--------cccch--hhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc
Q 000124 373 MVFEQKSGVDD--------EPFDA--RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT 442 (2138)
Q Consensus 373 ~~l~q~~~~~~--------~~~~~--~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ 442 (2138)
..+. ..... ..+.. ..+...+..++.......++..++.++.+....-.. ..+.+...++.+...+.
T Consensus 169 ~~~~--~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 169 FDFS--AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM 245 (1049)
T ss_dssp HTSC--TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH
T ss_pred HHhc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC
Confidence 2111 00000 01111 112233344444333344777888888765332221 12333455565553222
Q ss_pred cCCHHHHHHHHHHHHHhhhccc-hh----hHHhhh--chhHHHHHH-H----------h---cCCchhhHHHHHHHHHHH
Q 000124 443 MATADVREYLILSLTKLCRREV-GI----WEAIGK--REGIQLLIS-L----------L---GLSSEQHQEYAVQLIAIL 501 (2138)
Q Consensus 443 sss~evq~~Aa~aL~~Ls~~s~-~~----~~~I~e--~ggIp~LV~-L----------L---~s~d~~Vr~~Aa~aL~nL 501 (2138)
.+++++..++.+|..+..... .. ...+.. .+.+..+.. + + ...+.+.....+..+..+
T Consensus 246 -~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 246 -TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp -HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 378889999999988876521 11 111100 112222211 1 1 112333333444444443
Q ss_pred hhcC-------chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc----C---ChhHHHHHHHcCCcchhhhcc
Q 000124 502 TEQV-------DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC----H---SEDIRACVESAGAVPAFLWLL 567 (2138)
Q Consensus 502 a~~s-------~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~----~---sd~~r~~I~e~GaI~aLv~LL 567 (2138)
+... ++.+..+ ...++.++......+.++...+......+.. . ....+..+. ..++.++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~--~Lv~~ll~~m 400 (1049)
T 3m1i_C 325 LARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRLVIIENM 400 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH--HHHHHHHHTC
T ss_pred HHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH--HHHHHHHHhc
Confidence 3210 0011111 1234445555556677888888877776654 1 111121111 1112222211
Q ss_pred cc---------C----------Ch---hHHHHHHHHHHHHHHhhchhhHHHHHHH----hcC--CCcchHHHHHHHHHHH
Q 000124 568 KS---------G----------GP---KGQDASAMALTKLIRAADSATINQLLAL----LLG--DSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 568 kS---------~----------~~---evq~~Aa~AL~nLs~~~e~~aI~~Li~L----L~~--~d~~V~~~A~~AL~~L 619 (2138)
.- + +. ..+..+..+|..++.......++.+... +.+ .+...++.++.+++.+
T Consensus 401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 10 0 00 2244566677777654333444444443 332 2344566777777766
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcC-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM 694 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks-----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~ 694 (2138)
+........ ... -...++.|..+... ..+.++..+++++...+..-..+... =..+++.++..+.+.++.
T Consensus 481 a~~~~~~~e-~~~--l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~--l~~vl~~ll~~l~~~~~~ 555 (1049)
T 3m1i_C 481 SGTMSEDTE-KRF--VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFMHETHEG 555 (1049)
T ss_dssp TTSSCHHHH-HHH--HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH--HHHHHHHHHHHTTSSCHH
T ss_pred hcccCchhh-HHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhcCCCHH
Confidence 532211110 000 01134444443322 13344445777777665421111111 124566677788888999
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhHH----------hcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 695 VATQSARALGALSRPTKTKTTNKMSYI----------AEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~~I~----------~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
++..|+.++.+++. ..+..+. -..++..|..++..-+.+.......+++.++.
T Consensus 556 V~~~A~~al~~l~~------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 556 VQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999986 2232222 01122333344444444445566666666643
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.092 Score=63.33 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~-Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
+..+++-|.+++.+.+..++.-|.. +..+.+-...|+..+|+..|+++....+...+..++.+|.+|-. ...|.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-----~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-----FVDGM 194 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-----SHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-----ccccc
Confidence 5566777888888889999999987 67889999999999999999999988899999999999999985 34566
Q ss_pred HHHH-HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCc----------HHHHHHhhc---cCCH
Q 000124 165 KIFV-TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG----------VDIIVGLLS---SDNA 230 (2138)
Q Consensus 165 e~Iv-eaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG----------I~~Lv~lL~---s~s~ 230 (2138)
..++ ....|..+..++.+ ..+.|...|+..|..+|...++....+.++-. .+.|+.+|. +.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cchhCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666 44578888888874 34778999999999999988876665554433 788999997 6788
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 000124 231 AAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~ 248 (2138)
+++.+++..+..+...-+
T Consensus 272 elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999988888775433
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.12 Score=62.28 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=112.6
Q ss_pred HHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhch
Q 000124 396 VMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2138)
Q Consensus 396 V~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~g 474 (2138)
+..+.+.+.+ .+.+++..|..+ ..+.+...++...+|+..|+.....++...|.++..+|.++-.........+-...
T Consensus 124 iekL~~~~~~-~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 124 LEKLYSSSGP-ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHCCHH-HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3333444443 567888888874 56788999999999999999999999999999999999999877333333333556
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc-------C---CchHHHHHhh---hCCHHHHHHHHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-------G---GIPPLVQLLE---AGSQKAREVAAHVLW 541 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a-------G---aIp~LV~LLk---s~d~~vre~Aa~aL~ 541 (2138)
.|..+..++.+.+..+.+.|+.+|..++..++.+...+.++ . .+..|+.+|+ +++.+++..+...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 78889999998889999999999999998766555444332 1 3778999997 668999988776665
Q ss_pred HH
Q 000124 542 IL 543 (2138)
Q Consensus 542 nL 543 (2138)
.+
T Consensus 283 ~l 284 (339)
T 3dad_A 283 KT 284 (339)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.00 E-value=8.5 Score=52.71 Aligned_cols=344 Identities=12% Similarity=0.054 Sum_probs=175.5
Q ss_pred hhCCHHHHHHHHHHHHHHhcCChh-HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c----hhhHHHHH
Q 000124 526 EAGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D----SATINQLL 598 (2138)
Q Consensus 526 ks~d~~vre~Aa~aL~nLs~~sd~-~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e----~~aI~~Li 598 (2138)
.+.+...++.++.+++.++..-.. ....+. ..++.+..+ .++.+.++..++++++.++..- . ...++.++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~--~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~ 535 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVP--GLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVL 535 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH--HHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHH--HHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 344788899999999999763221 001111 112222233 3357889999999999887541 1 24567777
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcCh-hhhhhh
Q 000124 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQ-DICGSL 675 (2138)
Q Consensus 599 ~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~-e~r~~I 675 (2138)
..+.+ +.++..++.++..++..... .... .-...+..|..++..+ +.+.+..+..+++.+...-+ +.....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~--~l~p--~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKY--DLPP--YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGG--GCTT--THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHH--HHHh--hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77754 78999999999988743211 0000 0122355556666653 67889999999999876332 222222
Q ss_pred hhCCCHHHHHHHhc----c-CCHHHHH---HHHHHHHHhcCCCCc-cc-c--------------h--hhhHHhcCChhhH
Q 000124 676 ATDEIVNPCMRLLT----S-NTQMVAT---QSARALGALSRPTKT-KT-T--------------N--KMSYIAEGDVKPL 729 (2138)
Q Consensus 676 ve~GaV~~Lv~LL~----d-gs~~Vk~---~AA~ALanLa~s~~~-~d-~--------------~--r~~I~~~G~V~~L 729 (2138)
. ...++++...+. . .++..+. ....+|+.+.+.... .+ . . ...-....+++.+
T Consensus 610 ~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 610 L-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp H-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1 234444444432 2 2454444 334444444432111 00 0 0 0011222344555
Q ss_pred Hhhhhc--CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHH-----hCCCHHHHHHHHHHHHHhhhcCCCch
Q 000124 730 IKLAKT--SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVL-----AEGTSEGKKNASRALHQLLKHFPVGD 800 (2138)
Q Consensus 730 v~LL~s--~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL-----~~~~~~Vr~~Aa~AL~nL~~~~~~~d 800 (2138)
..++.. .+.++.+.++.++..++. .+.. ...+|+++..+ ..+.+.+-.-....+...+.+....+
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~------~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF------APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT------GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhcccc------cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence 555543 467888888888888753 1110 12344444332 11233333222223322222211111
Q ss_pred hhhhhhhhhhhHHHHHHhhc-cCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHH
Q 000124 801 VLKGNAQCRFVVLTLVDSLN-AMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD 879 (2138)
Q Consensus 801 ~i~~~i~~~gav~~LV~LL~-s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~ 879 (2138)
.+.. +. .......+.++. .-.+....+.+....+..+........ ..++. ....-+..+...+.+.++.+..
T Consensus 763 ~~~~-~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~-~~~~~----~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 763 PIEA-LF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF-LCERL----DVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp HHHH-HH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-GCTTS----CHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHH-HH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-cCCcc----cHHHHHHHHHHHcCCCCHHHHH
Confidence 1111 00 122333444443 223345677788777777764311100 00000 0111344556677788888999
Q ss_pred HHHHHHHHhhccC
Q 000124 880 KAIEILSRLCGDQ 892 (2138)
Q Consensus 880 ~AieiL~~L~~~~ 892 (2138)
.+...+.+++...
T Consensus 836 ~~l~~l~~l~~~~ 848 (963)
T 2x19_B 836 ASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988654
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0043 Score=72.43 Aligned_cols=186 Identities=14% Similarity=0.071 Sum_probs=130.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCc
Q 000124 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518 (2138)
Q Consensus 439 ~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaI 518 (2138)
.++.+.++.++..++..+ ....+..+++++++.+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 455777888888887642 122367778899999999988642 12
Q ss_pred hHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHH
Q 000124 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLL 598 (2138)
Q Consensus 519 p~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li 598 (2138)
+.|..++++.++.+|..++.. +. .+.|..+++++++.++..++.. +. .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~---l~---------------~~~L~~L~~D~d~~VR~~aA~~---l~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR---LP---------------LEQLEQMAADRDYLVRAYVVQR---IP-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHh---CC---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------HHHHH
Confidence 456777888999999988873 21 2346677889999999988873 21 12355
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 599 ~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.++++.++.|+..+...+ .-+.|..+++++++++|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l---------------------~~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL---------------------PEESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS---------------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcC---------------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 677888888887654421 124455678888999999888652
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000124 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa 749 (2138)
..+.|..++.+.+..||..++..+. .+.|..| ++++..|+..+...|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~---------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS---------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC---------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC---------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1245778889999999998886531 2345555 8889999998876654
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.44 Score=60.40 Aligned_cols=217 Identities=13% Similarity=0.162 Sum_probs=146.2
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHh-c--------cC-CHHHHHHHHHHHHH
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLL-T--------SN-TQMVATQSARALGA 705 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL-~--------dg-s~~Vk~~AA~ALan 705 (2138)
....|+.-+-++++++|-.|+.+|..+........+..... +..-.|+-++ - |. -..||+.|+++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34555666667899999999999999976432211111111 2222232222 1 11 12699999999999
Q ss_pred hcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHH
Q 000124 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2138)
Q Consensus 706 La~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~A 785 (2138)
+ .+.+. . ..++..|+..+.....+++.-++-.|..+. +.... -.+.++.++..|.+.+++||..|
T Consensus 255 L-~hLp~--e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 255 I-YPLIG--P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp H-TTTSC--S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-HhCCh--h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 9 75554 2 235566666667888999999999999981 11111 35678888889999999999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHH
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
+.+|.-++.. +. -...+..+.++|...++-..........|+.|.+.+.. . ...+.-++.
T Consensus 320 AetLiPIA~p----~~------l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a---------~~dp~LVPR 379 (800)
T 3oc3_A 320 AELLCHFPIT----DS------LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-L---------SIPPERLKD 379 (800)
T ss_dssp HHHHTTSCCS----ST------HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-C---------CCCSGGGGG
T ss_pred HHHhhhhcch----hh------HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-c---------ccChHHHHH
Confidence 9999877721 11 14567778888876554445566677778877764321 1 112355777
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhh
Q 000124 866 LVCCLAEGPPPLQDKAIEILSRLC 889 (2138)
Q Consensus 866 Lv~ll~~~~~~vq~~AieiL~~L~ 889 (2138)
|--++.+.-..||...++.|..++
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH
Confidence 888899999999999999998887
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=93.87 E-value=31 Score=48.00 Aligned_cols=502 Identities=11% Similarity=0.074 Sum_probs=231.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc-----CHH
Q 000124 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIK 292 (2138)
Q Consensus 218 I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~-----s~e 292 (2138)
++.++..+-+++.+.|..|-..|..+-. ++ ++...+..++..+.+..+|-.|+..|.+...+ +++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 4445555545555577777777766552 22 33444455555556779999999999888653 344
Q ss_pred HHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHH
Q 000124 293 AKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIG 366 (2138)
Q Consensus 293 ~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs-----Ggis~LI~~L~elL~~~~s-s~~~A~~L~ 366 (2138)
.+..+. ...++.+.....++. ..+ ....++.....+++.+. ..-+..+..+...++.... ......++.
T Consensus 88 ~~~~Ir-~~Ll~~l~~~~~~~~--~i~--~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 88 HRIGIR-NFVVGMIISMCQDDE--VFK--TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHSHH--HHH--HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhcCCcc--ccc--ccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 222333333221111 000 00012333444444443 1223455555555543322 111223333
Q ss_pred HHHHHHHHhhcCCCCC--Ccccc------hhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHH
Q 000124 367 ALAYALMVFEQKSGVD--DEPFD------ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI 438 (2138)
Q Consensus 367 aLa~~l~~l~q~~~~~--~~~~~------~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV 438 (2138)
.+......+..+.... +..+. -..+...+..++.......+...++.++......-.. ..+...+.++.++
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY-RYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHH
Confidence 3333221111000000 00000 0122244445554433334666677777766443222 2344556777777
Q ss_pred -HHHccCCHHHHHHHHHHHHHhhhccc--h---hhHHhhh--chhHHHH-----------HHHh---cCCchhhHHHHHH
Q 000124 439 -GLITMATADVREYLILSLTKLCRREV--G---IWEAIGK--REGIQLL-----------ISLL---GLSSEQHQEYAVQ 496 (2138)
Q Consensus 439 -~LL~sss~evq~~Aa~aL~~Ls~~s~--~---~~~~I~e--~ggIp~L-----------V~LL---~s~d~~Vr~~Aa~ 496 (2138)
.++. +++.+..|+.+|..+..... + ....+.. .+.++.+ ...+ ...+.+..+.-+.
T Consensus 242 ~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~ 319 (1023)
T 4hat_C 242 TKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1023)
T ss_dssp THHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHH
Confidence 6664 57889999999998876321 1 1111100 0111111 1112 1223444444555
Q ss_pred HHHHHhhcCchhHHHHHhcCC-ch-------HHHHHhhhCCHHHHHHHHHHHHHHhc----C---ChhHHHHHHHcCCcc
Q 000124 497 LIAILTEQVDDSKWAITAAGG-IP-------PLVQLLEAGSQKAREVAAHVLWILCC----H---SEDIRACVESAGAVP 561 (2138)
Q Consensus 497 aL~nLa~~s~e~r~~I~~aGa-Ip-------~LV~LLks~d~~vre~Aa~aL~nLs~----~---sd~~r~~I~e~GaI~ 561 (2138)
.+..++.. ....+..... .+ .|+..-..++.++-..+...=..|.. + ....+..+. ..++
T Consensus 320 l~~~~~e~---~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~--~L~~ 394 (1023)
T 4hat_C 320 FLTTYLAR---NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS--QLRL 394 (1023)
T ss_dssp HHHHHHHH---HGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH--HHHH
T ss_pred HHHHHHHH---HHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHH
Confidence 55555442 1111211101 11 22222223466665555543333322 0 001111110 1122
Q ss_pred hhhhccccC---------------------ChhHHH-HHHHHHHHHHHhhchhhHHHHHHHh----cC--CCcchHHHHH
Q 000124 562 AFLWLLKSG---------------------GPKGQD-ASAMALTKLIRAADSATINQLLALL----LG--DSPSSKAHVI 613 (2138)
Q Consensus 562 aLv~LLkS~---------------------~~evq~-~Aa~AL~nLs~~~e~~aI~~Li~LL----~~--~d~~V~~~A~ 613 (2138)
.|++-+.-+ +....+ ....+|..++.-...+.++.+...+ .. .+....+.++
T Consensus 395 vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~ 474 (1023)
T 4hat_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 474 (1023)
T ss_dssp HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 222211111 111122 2225555555433335555555544 33 3456678888
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL 688 (2138)
.|+|.++...... .-... -...++.|+.+++. .+..++..+++++++.+.--..+... =..++..|.+.+
T Consensus 475 ~a~gaIa~~~~~~-~e~~~--l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl~~L~~~l 549 (1023)
T 4hat_C 475 WAIGSISGTMSED-TEKRF--VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHTTTSSCHH-HHHHH--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCch-hHHHH--HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHh
Confidence 8888876432221 11111 12357778887753 23345566778887765521111111 123445566666
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHh------cCChhhHHh----hhhcCCHHHHHHHHHHHHHhhC
Q 000124 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIA------EGDVKPLIK----LAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 689 ~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~------~G~V~~Lv~----LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
.+.++.++..|++|+.+++. ..+..+.. ...+..++. ....-+...+..+..+++.+..
T Consensus 550 ~~~~~~v~~~A~~al~~l~~------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 550 HETHEGVQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp TCSCHHHHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHH------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77789999999999999986 34443332 112333333 3333456667788888888876
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=93.53 E-value=35 Score=47.50 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
++.++..+.+++++.|..|-..|..+-+.+ ++......+|.. .++.+|..|+..|.+......+.-+...
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 555566666666667777888887764433 344555566654 5899999999999887652111111222
Q ss_pred HHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
+..++...+..+.+....+. ...+.++.....++..+.... ..+|. .-++.++..+.+ ++......+.+|.
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 33344445555554322110 002345555666777665543 12332 246777887764 4556777888888
Q ss_pred HHHhhcCCC--------cc-hh----hc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHH
Q 000124 242 RLMLAFGDS--------IP-TV----ID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2138)
Q Consensus 242 nLs~~~~e~--------r~-~l----~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~L 306 (2138)
.|...-.+. +. .+ .. ...+..+..++....+..+...+..++.....- -.-..+.+.+-++.+
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHH
Confidence 877421110 00 01 00 123344445554444445666666766665542 122345556677777
Q ss_pred H-HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhc
Q 000124 307 I-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2138)
Q Consensus 307 I-~LL~s~s~e~mq~~~~~alqe~Al~ALanIsG 339 (2138)
+ .++.++. ++..|+.||..+.+
T Consensus 241 ~~~~L~~~~-----------~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMTSPD-----------TRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHHSHH-----------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHH-----------HHHHHHHHHHHHHc
Confidence 7 6654322 67788888888765
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=91.44 E-value=59 Score=45.07 Aligned_cols=509 Identities=15% Similarity=0.121 Sum_probs=233.1
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhcc-ch-
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRRE-VG- 465 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s-~~- 465 (2138)
++..+...+.+..+...|..|-.-|..+-.+++.| .....++..+ +..++..++..|.+....- ++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw---------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~ 78 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGW---------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNES 78 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHH---------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHH---------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 33444344455434447777777777665555433 3445555443 6788888888887655421 12
Q ss_pred ---hhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCH-HHHHHHHHHH
Q 000124 466 ---IWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVL 540 (2138)
Q Consensus 466 ---~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~-~vre~Aa~aL 540 (2138)
.+..+ +...+..+.+.-. ....-++...+.++..+..+.....+ .+.++.++.++.+++. ........+|
T Consensus 79 ~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 79 NLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp SHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 22222 2233333333110 23456888888888888764322222 2467777888776543 2223333333
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-chhhHHHHHHHh----cCCCcchHHHHHHH
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-DSATINQLLALL----LGDSPSSKAHVIKV 615 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-e~~aI~~Li~LL----~~~d~~V~~~A~~A 615 (2138)
..+.. + +.+.. + .+ +.+.+.+. .-+....... -..+.+.+..+| ...++.+...+.+|
T Consensus 154 ~~i~E---E----v~~~~-~------~~--~~~~~~r~-~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~ 216 (980)
T 3ibv_A 154 LSIGD---E----IADSL-V------LK--TDVQIQKD-NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQV 216 (980)
T ss_dssp HHHHH---H----HCCCC-S------CC--CHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHH---H----HHhcc-c------cc--CHHHHhhh-HHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33321 1 11000 0 01 11111111 0111111110 011122222222 33556666777777
Q ss_pred HHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh--hhhhhhhhCCCHHHHHHHhc--cC
Q 000124 616 LGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ--DICGSLATDEIVNPCMRLLT--SN 691 (2138)
Q Consensus 616 L~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~--e~r~~Ive~GaV~~Lv~LL~--dg 691 (2138)
++......+... +...+.++.+..++. ++++++.|+.+|..+..... +....+++.=.+...+..+. ++
T Consensus 217 l~s~i~wi~~~~-----i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~ 289 (980)
T 3ibv_A 217 YAQWVSWININL-----IVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQST 289 (980)
T ss_dssp HHHHTTTSCHHH-----HHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHhhcCHHh-----hhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccc
Confidence 776654433221 234557888888885 48999999999999987422 22222222100111111121 34
Q ss_pred CHHHHHHHHHHHHHhc------CCCCc-cc-chhhh--HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch-----
Q 000124 692 TQMVATQSARALGALS------RPTKT-KT-TNKMS--YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD----- 756 (2138)
Q Consensus 692 s~~Vk~~AA~ALanLa------~s~~~-~d-~~r~~--I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e----- 756 (2138)
+.+..+.-++.+..++ ...+. .+ +.+.. -.-.+.++.++.++..++.++...+...+..+.....
T Consensus 290 D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~ 369 (980)
T 3ibv_A 290 DPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS 369 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 5454433332222221 11110 00 01100 1113577788888888888888877666665542100
Q ss_pred --HHHHH--HhcCcHHHHHHHHhCC-----------C-----HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHH
Q 000124 757 --IAAEV--LLEDVVSALTRVLAEG-----------T-----SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816 (2138)
Q Consensus 757 --~r~~I--i~~g~L~~LV~LL~~~-----------~-----~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV 816 (2138)
..... .-...++.+++-+.-+ + .+.|+... .+...+..-. .+.+... . ...+..++
T Consensus 370 ~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~-~~~~l~~-~-~~~i~~~l 445 (980)
T 3ibv_A 370 KELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSID-SSLFSSY-M-YSAITSSL 445 (980)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHC-HHHHHHH-H-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcC-hHHHHHH-H-HHHHHHHH
Confidence 00000 0011233333222110 1 03444444 3333332100 0111000 0 00122222
Q ss_pred -Hhhc---cCCCCchhHHHHHHHHHHHhhcccCCcccCCcc-cccccCCCchHHHHHhhh-----cCChHHHHHHHHHHH
Q 000124 817 -DSLN---AMDMNGTDVADALEVVALLARTKQGLNFTYPPW-AALAEVPSSIEPLVCCLA-----EGPPPLQDKAIEILS 886 (2138)
Q Consensus 817 -~LL~---s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~-~~~~~~~~~L~~Lv~ll~-----~~~~~vq~~AieiL~ 886 (2138)
+.+. ..++. ....++-+++.++. ++....... ......|.-++.+..++. ..||.++..+.+++.
T Consensus 446 ~~~l~~~~~~~W~--~~EaaL~~l~~iaE---~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ 520 (980)
T 3ibv_A 446 STAATLSPENSWQ--LIEFALYETYIFGE---GLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV 520 (980)
T ss_dssp HHHTTSCHHHHHH--HHHHHHHHHHHTTT---TCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCCHH--HHHHHHHHHHHHHh---hccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 2221 12233 37778888888774 222110000 000112333445555544 788999999999999
Q ss_pred HhhccCCchhhhhhhcccccHHHHHHHHhc-----cCCceeehhhhHHHHHhcccchhhHHHHHhhcCCcHHHHHHHHH
Q 000124 887 RLCGDQPAVLGDFLMARSSSIGALADRIMH-----SSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960 (2138)
Q Consensus 887 ~L~~~~~~~~~~~~~~~~~~i~~La~~il~-----s~~~ev~~~~~~~~i~a~k~~~~~~~~~L~~~g~~~~~i~~Lv~ 960 (2138)
++.. |....+..+..++..++. +....|+..+...+- .|+...=. .+.++++..+..+.+
T Consensus 521 rys~--------~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~----~f~~~~~~--~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 521 RYAS--------FFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFY----RFVKSIKK--QVVNYTESSLAMLGD 585 (980)
T ss_dssp HTGG--------GGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHH----HHHHHTTT--TCSSSHHHHHHHTTG
T ss_pred HHHH--------HHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHH----HHHHHhhH--HhhhHHHHHHHHHHH
Confidence 9865 333455677788888776 344556666665552 22222111 234666666655443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.92 E-value=5.7 Score=46.79 Aligned_cols=170 Identities=15% Similarity=0.050 Sum_probs=114.8
Q ss_pred hHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc----cccCChhHHHHHHHHHHHHHHhh-----
Q 000124 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL----LKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 519 p~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L----LkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
+.+...|.+.+..-+..+...|......+ .+..+. .+..++.. +.+.++.+...+...|..+...-
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~--~~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS--PRSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC--HHHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555566666666666666665543211 122221 22223332 23678888888888888765321
Q ss_pred ---c---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 590 ---D---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 590 ---e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
+ ...+|.|+.-+.+..+.++..+...+..+....+. ....+.+..-+++.|..+|+.+...+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LKMTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1 34679999999999999999988888776543222 1246677778899999999999999998
Q ss_pred HhhcChhhhhhhhhCCCH---HHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 664 LFSMRQDICGSLATDEIV---NPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~GaV---~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+... .... ...++ +.+.+++.|.+..+|..|..++..+-.
T Consensus 194 li~~-~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITN-AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHH-HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 8652 1111 24578 999999999999999999999987754
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.78 E-value=2 Score=50.20 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh-----hhhhhhhCCCHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQD-----ICGSLATDEIVNPCMR-LLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e-----~r~~Ive~GaV~~Lv~-LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+.+...+.+.+..++..++.++..++..... ......-..+++.|+. .+.+..+.++..|..++..+......
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 44455677788999999999999888652111 1111122345566664 47788899999988888777641111
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--chH-HHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI-AAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e~-r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
.. .++..+...+.+.++.++.+++..|..+... ... -....-...++.+..++.+.++.||..|..++
T Consensus 137 --~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 137 --IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp --SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 1456677788899999999999999887531 110 00111112455677788999999999999999
Q ss_pred HHhhhc
Q 000124 790 HQLLKH 795 (2138)
Q Consensus 790 ~nL~~~ 795 (2138)
..+...
T Consensus 208 ~~ly~~ 213 (278)
T 4ffb_C 208 VEIYKV 213 (278)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.50 E-value=7 Score=45.62 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=117.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCch---hHHH-HH-hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh-
Q 000124 89 FISILRSGTPLAKVNVAATLSVLCKDED---LRLK-VL-LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV- 162 (2138)
Q Consensus 89 LV~LLks~~~evr~~Aa~~L~~Ls~~e~---~r~~-v~-~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~- 162 (2138)
|-+-|.+.+-..|..+..-|..+..... .... +. .....+.+-+.+.+.+..+...++.+|..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567788888889998888866543211 1111 11 1234556667888889999999999999988642210100
Q ss_pred hHHHHHHcCcHHHHHHh-hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQ-LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~L-L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
......-..++|.|++- +.+.. +.++..+..++..++........ .++.+...+.+.++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11122234567878764 54433 45788888888877654322101 3567778888899999999999999
Q ss_pred HHHhhcC-CCcc-hhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhh
Q 000124 242 RLMLAFG-DSIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2138)
Q Consensus 242 nLs~~~~-e~r~-~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~ 288 (2138)
++..... .... ...-..+++.+..++. +.+..+|..|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 8874321 1111 1111124445666666 5788999999888877644
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=11 Score=45.54 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=144.5
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhhhC--CHHHHHHHHHHHHHHhc
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLEAG--SQKAREVAAHVLWILCC 545 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~ 545 (2138)
+...+.+..|+..+..-+.+.|+.++.+..++.+...+++...++ ..- |.++..|-.+ ++++--.+-..|+....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 344567788888888889999999999999998865544332211 122 4444444333 55555555566777665
Q ss_pred CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHH
Q 000124 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIK 614 (2138)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~~d~~V~~~A~~ 614 (2138)
.+...+.+...+.+-.+++....++-++...|-.++..+..... ........+|+.+++.-.+.++..
T Consensus 153 -~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 -HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp -SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred -hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 56667777777888888888888998998888888887754311 234566788999999999999999
Q ss_pred HHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 615 VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 615 AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
-|+.+.....+.....+-+....-+..+..++++.+..+|..|..++.-...
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999887666666666667777889999999999999999999998876655
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=89.85 E-value=6 Score=55.31 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=118.9
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHH--hhchhhHHHHHHHhcCC----CcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIR--AADSATINQLLALLLGD----SPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~--~~e~~aI~~Li~LL~~~----d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
..+.++++++.....+ ++.+|..... .++.+.+..+..|++.. ++.++..+.-+++.|.+..-.. ....
T Consensus 359 ~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~----~~~c 433 (1056)
T 1lsh_A 359 LFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TVSC 433 (1056)
T ss_dssp HHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CSSC
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc----CCCC
Confidence 3344445554433333 4344433222 24556777777777653 3345555566666665321000 0001
Q ss_pred ccchhhHHH----HhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHHHH
Q 000124 635 ANKGLRSLV----QVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSARAL 703 (2138)
Q Consensus 635 ~~GaI~aLV----~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-------gs~~Vk~~AA~AL 703 (2138)
....++.+. +.+..++.+.+..+..+|.|+.. ...++.|.+++.. ....++..|.+||
T Consensus 434 ~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 434 PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHH
Confidence 112234444 44556678888999999999986 3466777777642 2457889999999
Q ss_pred HHhcCCCCcccchhhhHHhcCChhhHHhhh--hcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC-CCHH
Q 000124 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLA--KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSE 780 (2138)
Q Consensus 704 anLa~s~~~~d~~r~~I~~~G~V~~Lv~LL--~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~-~~~~ 780 (2138)
.++....+. .+-+.|..+. ...+.++|..|+..|.. ++|. ...+..+...+.. .+.+
T Consensus 503 r~~~~~~p~-----------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~-------~~~l~~ia~~l~~E~~~Q 562 (1056)
T 1lsh_A 503 RNIAKRDPR-----------KVQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-------VALVSMVAVRLRREPNLQ 562 (1056)
T ss_dssp TTGGGTCHH-----------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-------HHHHHHHHHHHTTCSCHH
T ss_pred HHhhhhchH-----------HHHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcC-------HHHHHHHHHHHhhCchHH
Confidence 999752221 1334567777 44788999988888853 2333 1245556665554 6889
Q ss_pred HHHHHHHHHHHhhhcC
Q 000124 781 GKKNASRALHQLLKHF 796 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~~ 796 (2138)
|+......|.+++...
T Consensus 563 V~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 563 VASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998864
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.85 E-value=2.1 Score=50.45 Aligned_cols=132 Identities=7% Similarity=0.091 Sum_probs=91.2
Q ss_pred CCCcchHHHHHHHHHHHHhhhcchHHHHhhhc---ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA---ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 603 ~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~---~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
+.+..+...+.+.|..+.......+. .+. ..-.+|.|+.-+.++.+.+|+.+-.++..++.-.+ -..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y---~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTET---PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLK 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHH
Confidence 55666666677777665433211100 011 12358889998888899999999888877764211 123
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCCh---hhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV---KPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V---~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+.+.++.-+++.+..+|..+...+..+...... . ....+ +.+.+++.+.+..||+.|+.++..+-
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~--~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGI--S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS--G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC--C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 556677888999999999999999888651111 1 12367 89999999999999999999987654
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=89.06 E-value=92 Score=43.58 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=126.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
++.++..+.+++++.|..|-..|..+-..++. ...+..+|.. .++.+|..|+..|.+......+.-+...
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 55566666667788888888888887554433 3444455655 5899999999999988753211111222
Q ss_pred HHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s--~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
+..++...+..+.+.-..+. ..++.+......++..+.... ...|. .-++.++..+.. ++......+.+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 33344445555555433221 124556667777777776542 12332 235666666654 4566777888888
Q ss_pred HHHhhcCCCcc---------h----hhc--cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHH
Q 000124 242 RLMLAFGDSIP---------T----VID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2138)
Q Consensus 242 nLs~~~~e~r~---------~----l~~--~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~L 306 (2138)
.|...-.+... . +.. ...+..+...+....+..+...+..++..+...- .-..+.+.+-++.|
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHH
Confidence 88743111100 0 111 1233334444544455566666677777665531 22345566666766
Q ss_pred H-HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhc
Q 000124 307 I-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2138)
Q Consensus 307 I-~LL~s~s~e~mq~~~~~alqe~Al~ALanIsG 339 (2138)
+ ..+.++. .+..|+.||..+.+
T Consensus 253 ~~~~L~~~~-----------~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 253 IYKFLNVPM-----------FRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTSSSHH-----------HHHHHHHHHHHHHH
T ss_pred HHHhcCChH-----------HHHHHHHHHHHHHh
Confidence 3 5543321 67888889888764
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=88.21 E-value=1.4 Score=55.97 Aligned_cols=239 Identities=15% Similarity=0.079 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-----------h-C-CHHHHHHHHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-----------A-G-SQKAREVAAHVLWI 542 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-----------s-~-d~~vre~Aa~aL~n 542 (2138)
...|+.-|-++..++|..|+.+|+.+..............+. ...++++- + . -..+|+.|+.+|+.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 455666667888899999999999987643211000011111 33444431 1 1 35789999999999
Q ss_pred HhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--chhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 543 Ls~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
+ .+-+.- ...+..|+..+.....+++..+.-.|.++..-- -.++++.++..|.+.+++|+..++.+|.-++
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 9 543321 233444455557778899999999999982111 1456788888999999999998888876554
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCC--HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSN--EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s--~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
.++.+ ...+..+...+.+-+ ....-.....|+.|+...+. .......+|.|..++++.-..||..
T Consensus 328 ----~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 328 ----ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp ----CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred ----chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHHH
Confidence 11111 112444444444321 12233456677888774431 2233478899999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhH-HhhhhcCCHHHHHHHHHHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPL-IKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~L-v~LL~s~s~~Vr~eAl~ALa 749 (2138)
+.++|..+.. . .+++.+ -++|-..++++++.+..+..
T Consensus 395 VL~TL~tfL~------~--------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLSE------E--------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCCC------H--------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------h--------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9998877751 1 122222 34566678888887777663
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.91 E-value=1.1e+02 Score=43.23 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=92.7
Q ss_pred CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 000124 33 DPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL--RSGTPLAKVNVAATLSV 110 (2138)
Q Consensus 33 d~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LL--ks~~~evr~~Aa~~L~~ 110 (2138)
+.+..+..+.++++.......+...|..|-.+|..+-..+ ++...+...| .+.++.+|.-|+.+|.+
T Consensus 5 ~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~ 73 (1204)
T 3a6p_A 5 QVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEH 73 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3345667788888877666567777899999998875544 2333344433 34578999999999977
Q ss_pred hcc------CchhHHHHHhcCChHHHHHhhcc-------CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH
Q 000124 111 LCK------DEDLRLKVLLGGCIPPLLSLLKS-------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW 177 (2138)
Q Consensus 111 Ls~------~e~~r~~v~~~G~Ip~Lv~LL~s-------ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll 177 (2138)
... .++.+..+. ..++..+.. .+..+|.+.+.++..++..+.+.. =.+.++.|+
T Consensus 74 ~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~--------Wp~ll~~L~ 140 (1204)
T 3a6p_A 74 VVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH--------WPDMLIELD 140 (1204)
T ss_dssp HHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT--------CTTHHHHHH
T ss_pred HHHHhcccCCHHHHHHHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc--------chHHHHHHH
Confidence 642 234444443 233344322 368899999999999886321100 024788888
Q ss_pred HhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000124 178 DQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2138)
Q Consensus 178 ~LL~s~s~ed~~V~e~Al~aL~nLcs~ 204 (2138)
+++..+ ....+.++.+|..++..
T Consensus 141 ~~~~~~----~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 141 TLSKQG----ETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHTC----HHHHHHHHHHHHHHHHH
T ss_pred HHhcCC----HHHHHHHHHHHHHHHHH
Confidence 888642 24567788888888754
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.47 E-value=5.6 Score=45.93 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=99.0
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhh-cCh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFS-MRQ 669 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s-~~~ 669 (2138)
..++....|.+++.++++..++..|+.+ . .. ...++.+.. +...++..|++.++.++..++. .++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~----------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p 137 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD----------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY 137 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS----------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc----------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 3444555666777788888888877654 1 11 124666666 5667799999999999999985 344
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa 749 (2138)
+ ..++.+...+++++..+|+.|...+...+.. +...... .-+++.|-.+..+++.-||.....+|.
T Consensus 138 e--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp-----~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 138 K--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP-----NEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp T--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH-----HHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH-----HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 2567788999999999999998877553321 1100111 114556666778899999999999999
Q ss_pred HhhC-CchHHHHHH
Q 000124 750 NLLS-DPDIAAEVL 762 (2138)
Q Consensus 750 NLa~-~~e~r~~Ii 762 (2138)
.++. +|+.-..++
T Consensus 204 D~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 204 DISKKFPDLVKIEL 217 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhhhCHHHHHHHH
Confidence 9997 677544443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=84.74 E-value=18 Score=50.54 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=120.6
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh-cchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHHHHH
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADL 664 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~-~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~ALanL 664 (2138)
....+..+.+++..++-.. ..+.+++..+.+.. +. ...+..+..+++++ ++.+++.+..+++.|
T Consensus 354 T~~a~~~i~~~i~~~~l~~-~ea~~~l~~~~~~~~Pt----------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gsl 422 (1056)
T 1lsh_A 354 TSEALLFLKRTLASEQLTS-AEATQIVASTLSNQQAT----------RESLSYARELLNTSFIRNRPILRKTAVLGYGSL 422 (1056)
T ss_dssp SHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTCCCC----------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCH-HHHHHHHHHhhccCCCC----------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHH
Confidence 4455666667776655443 33556665444322 22 22466677777653 567788788777777
Q ss_pred hhc---ChhhhhhhhhCCCHHHHH----HHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--
Q 000124 665 FSM---RQDICGSLATDEIVNPCM----RLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-- 735 (2138)
Q Consensus 665 ~s~---~~e~r~~Ive~GaV~~Lv----~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-- 735 (2138)
... +...| ....++.+. +.+..++..-+..+.+||+|+.. +. .++.|..++..
T Consensus 423 V~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~------------~l~~l~~~l~~~~ 484 (1056)
T 1lsh_A 423 VFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN------------SIKKIQRFLPGQG 484 (1056)
T ss_dssp HHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG------------GHHHHHTTSTTSS
T ss_pred HHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh------------HHHHHHHhhcCcc
Confidence 542 11111 123344444 44566777888899999999975 32 56667777642
Q ss_pred -----CCHHHHHHHHHHHHHhhCC-chHHHHHHhcCcHHHHHHHH--hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhh
Q 000124 736 -----SSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVL--AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ 807 (2138)
Q Consensus 736 -----~s~~Vr~eAl~ALaNLa~~-~e~r~~Ii~~g~L~~LV~LL--~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~ 807 (2138)
....++.+|+.||.+++.. |. .+-+.+.++. ...++++|-.|...|.+-. |.
T Consensus 485 ~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~--------- 544 (1056)
T 1lsh_A 485 KSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS--------- 544 (1056)
T ss_dssp SCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC---------
T ss_pred ccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC---------
Confidence 3467889999999999853 22 1233455666 4458999999988885322 11
Q ss_pred hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000124 808 CRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2138)
Q Consensus 808 ~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~ 842 (2138)
...+..+...+.. +.+.++.......+.+++.+
T Consensus 545 -~~~l~~ia~~l~~-E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 545 -VALVSMVAVRLRR-EPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHhc
Confidence 2345566666653 33445555555566665543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=81.85 E-value=7.8 Score=44.78 Aligned_cols=139 Identities=10% Similarity=0.043 Sum_probs=92.5
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHHHHH-hhchhhHHHHHH
Q 000124 522 VQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKLIR-AADSATINQLLA 599 (2138)
Q Consensus 522 V~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~nLs~-~~e~~aI~~Li~ 599 (2138)
..+.++....+|..|+..|+.+ ... ...++.+.. +..+.+..+++.++.++..++. ......++.+.+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~ 146 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDE 146 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3445566788999999988877 211 113344444 5567788999999999999985 322346788889
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc-hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK-GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G-aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
..++++..++..+.+.+..-... +.. ..+.. .++.|-.+..+++.-+|...+++|..++..+|+-....++
T Consensus 147 W~~d~n~~VRR~Ase~~rpW~~~---~~~----k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 147 WLKSSNLHTRRAATEGLRIWTNR---PYF----KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHCSSHHHHHHHHHHTCSGGGS---TTT----TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhhHHHhcc---chh----hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 99999999988877665421110 000 00111 3455555666678889999999999999987766555443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=81.57 E-value=69 Score=38.83 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=136.2
Q ss_pred HHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhh-----HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000124 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW-----EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2138)
Q Consensus 427 ~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~-----~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2138)
.+...+.+..|+..+..=+-+.++.++..+.++-+...+.+ ........+..|+..++ ++++-..+-..|+.+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence 44555777888888888888999999998888877543322 11222334455555544 444555566667776
Q ss_pred hhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCCcchhhhccccCChhHHHHH
Q 000124 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQDAS 578 (2138)
Q Consensus 502 a~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~-~sd~~r~~I~e--~GaI~aLv~LLkS~~~evq~~A 578 (2138)
..+ +.....+...+.+..+.+....++-++-..|..++..|-. |.....+.+.. .......-.++.+++--+++++
T Consensus 151 ir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 663 4444445566677788888888899998888888887643 33333333332 1223344578999999999999
Q ss_pred HHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 579 AMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 579 a~AL~nLs~~~-----------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
...|+.+..+. +.+-+..++.||++.+..++..+-+....+......+..+..
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence 99999998663 344568899999999999999998888776654444333333
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.35 E-value=26 Score=41.99 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 641 SLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 641 aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
.+...+.+ +.+..+..+.+.++|++. ++..+..+... .+++.+...+.+.+..++..++..+.|++.........-
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 33444433 357779999999999998 66676666543 345555556666788999999999999986211000000
Q ss_pred hhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCCc-hHHHHHHhcCcHHHHHHHHhC-CCHHHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDP-DIAAEVLLEDVVSALTRVLAE-GTSEGKKNA 785 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~~~-e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~A 785 (2138)
. ...+...+..++.. .+.+....++.||++|...+ +.......-|....+-++... ..+++.+.+
T Consensus 230 ~---~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 230 G---KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp H---HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred H---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 0 11133334444443 67888889999999998743 333333333333333333333 234444443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.97 E-value=27 Score=44.18 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=105.7
Q ss_pred cCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh
Q 000124 569 SGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~-~--e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L 645 (2138)
.+++..++-|+..+..++.+ + ...++..++.|..+++..|+..+.+.|-.++.. +.+.+ ....|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~k------iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPR------VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhh------HHHHHHHH
Confidence 45688888889888888765 3 256889999999999999998887777665432 23332 47889999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCC
Q 000124 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2138)
Q Consensus 646 Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~ 725 (2138)
|+++++.-....-.+|..|...++. +.+..+..-+..+++.+|+.+..=|..-....+. +.-..-.+.-+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~--~~l~~E~E~~i 178 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPD--EVLTKEVEELI 178 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcch--hhccHHHHHHH
Confidence 9999888888888888888775442 3445556556667888888766655433321121 11111223335
Q ss_pred hhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 726 VKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 726 V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
+..+.+.|.+-+.+--.-.+..|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 55566677665544444455555544
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.55 E-value=4.7 Score=50.81 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=92.6
Q ss_pred hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCC
Q 000124 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDS 605 (2138)
Q Consensus 527 s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d 605 (2138)
.++...++-|+..+...-.+-...++. ++.+++.++.+.+..+|..|...|..+|.+.. ..+.+.|.+||..++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD 113 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence 457899999999999987776665443 78889999999999999999999999987621 467789999999888
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 606 ~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
+.....+.++|..+....+ .+.+..|..-+.++++.+|+.+..-|..=
T Consensus 114 ~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8777777777776654321 12355556555557888998877766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2138 | ||||
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-27 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-23 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 9e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-05 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-24 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-22 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-06 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-22 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-14 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-10 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-07 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 8e-07 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 0.002 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-19 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-15 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 9e-14 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 7e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-06 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 5e-06 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-04 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 0.003 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 8e-11 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-09 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 6e-09 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 8e-05 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 9e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-07 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-05 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 6e-07 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 6e-07 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-07 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-06 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-06 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 3e-05 | |
| d1lrva_ | 233 | a.118.1.5 (A:) Leucine-rich repeat variant {Azotob | 0.001 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (293), Expect = 1e-27
Identities = 90/555 (16%), Positives = 179/555 (32%), Gaps = 37/555 (6%)
Query: 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS 91
DD E + + + L N + + ++K K+ +R I Q + +
Sbjct: 10 DDAELATRAIPELTKLL--NDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVR 66
Query: 92 ILR-SGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++ + A TL L + L + G IP L+ +L S A L+
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
+ G + + LN N + T L+ L
Sbjct: 127 NLL----LHQEGAKMAVRLAGGLQKMVALLNKTNVK---FLAITTDCLQILAYGNQESKL 179
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
L +GG +V ++ + S + +++ + P ++++G ++AL +
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
+ V+ LS + K + + L+G+ C G +
Sbjct: 240 SQRLVQNCLWTL-RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
+ G +V + ++ I AL + ++ +
Sbjct: 299 KNKMMVCQVGGIEALVRT--VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
+ ++V LL P + + + + + +L + A L+ L+ A D +
Sbjct: 357 L-PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ T+ E G+ E+ E + IL + ++
Sbjct: 416 RTSMGGTQQQFVE--------------------GVRMEEIVEGCTGALHILA-RDVHNRI 454
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
I IP VQLL + + + VAA VL L ++ +E+ GA LL S
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSR 513
Query: 571 GPKGQDASAMALTKL 585
+A L ++
Sbjct: 514 NEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (261), Expect = 1e-23
Identities = 92/588 (15%), Positives = 178/588 (30%), Gaps = 80/588 (13%)
Query: 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184
IP L LL E AA ++++S + I + +V + + +N
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTM--QN 70
Query: 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
D G L NL ++G A ++GG+ +V +L S
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSP---------------- 113
Query: 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
SV A L L AK AV A G+
Sbjct: 114 ---------------------------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADI 364
++ + + + + + + L + ++ +
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206
Query: 365 IGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFL 424
L + K + + + + N L R L A+
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT------- 259
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
+ L+ L+ +V L+ L + + GI+ L+ +
Sbjct: 260 -KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318
Query: 485 LSSEQHQEY-----AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539
+ ++ A++ + ++ + ++ A+ G+P +V+LL S A
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378
Query: 540 LWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599
L A + GA+P + LL Q ++M T+
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV----------- 427
Query: 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659
+++ L + ++ + + VQ+L S E Q AA
Sbjct: 428 -----EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482
Query: 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707
VL +L + ++ ++ + P LL S + VAT +A L +S
Sbjct: 483 VLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (218), Expect = 2e-18
Identities = 87/605 (14%), Positives = 177/605 (29%), Gaps = 86/605 (14%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
A+ NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
V A+V+ + ND+ A L LS + A+ + G+P L+ + +P
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR----LAAPVADIIGALAYAL 372
+ +A L N+ + + + L + L
Sbjct: 117 ---------VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167
Query: 373 MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAE 432
+ + A LV +++ + + + + L + A
Sbjct: 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
Query: 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQE 492
+ L +T + + + + +L L + L+ LLG
Sbjct: 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVT 284
Query: 493 YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV-----AAHVLWILCCHS 547
A +++ LT +K + GGI LV+ + + A L +
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344
Query: 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607
E + V +P + LL + + L + +
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-------------------- 384
Query: 608 SKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667
+ LVQ+L ++++ Q +
Sbjct: 385 -----------------LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT----- 422
Query: 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727
+Q + +EIV C AL L+R N++ +
Sbjct: 423 QQQFVEGVRMEEIVEGC---------------TGALHILAR----DVHNRIVIRGLNTIP 463
Query: 728 PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787
++L + + A L L D + A + E + LT +L A+
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 788 ALHQL 792
L ++
Sbjct: 524 VLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.1 bits (211), Expect = 1e-17
Identities = 74/576 (12%), Positives = 172/576 (29%), Gaps = 63/576 (10%)
Query: 1295 IKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYK 1354
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ +
Sbjct: 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVR 66
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAF- 1413
+ + + +E R A + + + + S I L+ ++ S + V+ A+
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 1414 ERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGI 1473
LL E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 1474 IDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
++++ + + + + + + L Q+
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQ 1593
+ + ++ L+ L S + +L++L + +
Sbjct: 247 CLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 1594 DITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQ 1653
+ + + V+ + + A Q+
Sbjct: 302 MMVCQV--------------GGIEALVRTVLRAGDREDI-TEPAICALRHLTSRHQEAEM 346
Query: 1654 PPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDAS 1713
+++ L + L ++ + V + + +
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL------------------CPA 388
Query: 1714 SAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDP 1773
+ + + G I L+ LL + +Q
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAH--------------------QDTQRRTSMGGTQQQFVE 428
Query: 1774 QTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNF 1833
R E AL L++ ++ + LL + ++ VA L
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCEL 487
Query: 1834 VMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ A+ G + ELL S N VA AA
Sbjct: 488 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (151), Expect = 2e-10
Identities = 70/524 (13%), Positives = 164/524 (31%), Gaps = 36/524 (6%)
Query: 1511 AAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESP 1570
A + + L +L D + + A + + +K S + +P Q++ ++ +++
Sbjct: 15 ATRAIPELTKLLNDEDQVV--VNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNT 71
Query: 1571 SHA-IQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKAL---EKI 1626
+ + L +L I + LV++ G + ++ A+ L
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 1627 STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLV 1686
AV AGG+ ++ ++ + + + + ++ LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 1687 KMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA 1746
++ + + + +L +S+ + +AG + AL L L
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 1747 LFNNGRIRQMKVSKYAIAPLSQYLLD--PQTRSESGKLLAALALGDLSQHEGLARASASV 1804
+ + + + + L Q L + + +L+ L + + +
Sbjct: 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 1805 SACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEV 1864
+ R ++ + + E + A+ L + + + AV G+ VV +LL +
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 1865 AGQAALLTKFLFSNHTLQEYV-----------------SNELIRSLTAALERELWSTATI 1907
+A + + + R + ++ +
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Query: 1908 NEEVLRTLHVIFMNFPKLHTSEAATL---CIPHLVGALKSGSEAAQGSVLDTLCLLRNSW 1964
EE++ + + IP V L S E Q LC L
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA--- 488
Query: 1965 STMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
D ++A+ A A L L+ + A ++L +
Sbjct: 489 ----QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (145), Expect = 1e-09
Identities = 71/497 (14%), Positives = 144/497 (28%), Gaps = 38/497 (7%)
Query: 1386 IASECIQPLISLMQSDLSIVVESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNH 1444
+A+ I L L+ + +VV A +L + + ++ +V +VR + TN
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 1445 -RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNS 1502
T L L R + K+G I + +L S L I L +L +
Sbjct: 74 VETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132
Query: 1503 SAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEP 1562
+ A ++ + +L + + + ++ + L+ L Q +
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192
Query: 1563 LLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKA 1622
++ + + +L L + I + L L Q +
Sbjct: 193 IMRTYTYEK--LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 1623 LEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPV 1682
L +S + K G + + +++ DD + + N + +
Sbjct: 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 1683 VVLVKMLHSTLES-----TITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE 1737
LV+ + + AL L + + + + ++ LL
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 1738 ETSGRLLEALFNNGRIRQMKVSKY---AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH 1794
+ + N AI L Q L+ + + ++
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA---HQDTQRRTSMGGTQQQFV 427
Query: 1795 EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQ 1854
EG+ AL L D NR + I +
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVH---------------------NRIVIRGLNTIPLFV 466
Query: 1855 ELLLSTNAEVAGQAALL 1871
+LL S + AA +
Sbjct: 467 QLLYSPIENIQRVAAGV 483
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (144), Expect = 2e-09
Identities = 78/553 (14%), Positives = 168/553 (30%), Gaps = 44/553 (7%)
Query: 1079 RIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
R IP L LL ++ + AA + L + + V+ ++ + +
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVA 1198
L L + + IP LV +L A
Sbjct: 76 TARCTAG------------TLHNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYA 121
Query: 1199 VRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYE 1258
+ L ++ + K+ + AGGL + L+ + T L + + N +
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181
Query: 1259 ASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASEC 1318
+ L+ ++ + L + ++ + + + +
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241
Query: 1319 ELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGN 1378
L + ++ S +K + + G L++ N + L + N
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 1379 AKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL----DDEQQVELVEGYDVVDL 1434
++ E + + D + E A+CA L + E V + + +
Sbjct: 301 KMMVCQVGGIEALVRTVL-RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Query: 1435 LVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE 1494
+V+L+ +H + LI+ + + G I
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP------------------R 401
Query: 1495 LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKL 1554
L ++L + + + + F+ ++ + + G AL L + + L
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN- 460
Query: 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN 1614
I + L SP IQ++ +L L + + I + A PL +L
Sbjct: 461 ----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 1615 LQQTAVKALEKIS 1627
+ A L ++S
Sbjct: 517 VATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 4e-09
Identities = 69/520 (13%), Positives = 140/520 (26%), Gaps = 43/520 (8%)
Query: 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +N
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA-NLL 752
A +A L LS ++ G + L+K+ + A+ L LL
Sbjct: 75 ETARCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812
V L + + +L + + + L L ++ + +
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 813 LTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAE 872
+ ++ + + + ++ L L +
Sbjct: 191 VNIMRTYTYEK------------LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238
Query: 873 GPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLIC 932
L + L L + ++ G +
Sbjct: 239 PSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 933 AAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD 992
K + + L + D + + E
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354
Query: 993 FDVPDPATILGGTVALWLLLIISSFLRNNNVT------VMEAGALEALSDKLASYTSNPQ 1046
+ +P +L L+ +RN + + E GA+ L L + Q
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414
Query: 1047 A-------------EFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEV 1093
E + L IL +D + + + IP LL S
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474
Query: 1094 IDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGH 1133
+ AA + L + K AI GA A L L+
Sbjct: 475 NIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHS 512
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (138), Expect = 9e-09
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 62 TMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKV 121
L I R++I +PLF+ +L S + A L L +D++ +
Sbjct: 439 CTGALHILARDVHNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497
Query: 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153
G PL LL S + AA L+ +S
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (111), Expect = 1e-05
Identities = 85/539 (15%), Positives = 166/539 (30%), Gaps = 33/539 (6%)
Query: 1218 EAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVL-HLGSR 1276
+ LTK L+ Q + ++ S ++ ++ + +
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 1277 GARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTS 1336
A LH L + +P LV ML + + L A+ L L
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLIS 1396
L+ + +L+ + L L + +GN + +AS Q L++
Sbjct: 135 AKM--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192
Query: 1397 LMQSDLSI-VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALI 1455
+M++ ++ + + L + + L ++ + RLV+ + L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 1456 KLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIV 1515
L K + ++ + L + + L + N+ +
Sbjct: 253 NLSDA--ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 1516 EPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQ--VIEPLLSFLESPSHA 1573
E L +L+ A+ AL ++ + Q + + ++ L PSH
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 1574 IQQLGTELLTHLLAQEHFQQDITTK-NAVVPLVQLAGIGILNLQQTAVKALEKISTSWPK 1632
T L LA + A+ LVQL + Q+ +
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
Query: 1633 AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHST 1692
+ + A I+ D + N + + V++L+S
Sbjct: 431 RMEEIVEGCTGALHILARDV------HNRIVIRGLNTIP------------LFVQLLYSP 472
Query: 1693 LESTITVALNAL--LIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN 1749
+E+ VA L L D +AE + G L +LL S + E + LF
Sbjct: 473 IENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFR 527
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (263), Expect = 4e-24
Identities = 68/486 (13%), Positives = 132/486 (27%), Gaps = 60/486 (12%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
+P + L S + A + C DE + +V G I L+ LL+S + + ++A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AA AL + + + L + +Q +TG L NL
Sbjct: 64 AAGALRNLV----FRSTTNKLETRRQNGIREAVSLLRRTGNAE--IQKQLTGLLWNLS-- 115
Query: 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALV 264
+ L A + ++ + SG
Sbjct: 116 STDELKEELIADALPVLADRVIIPF---------------------------SGWCDGNS 148
Query: 265 QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI-----VAPSKECMQ 319
+ + D V +A L LSS + + + L+ + + +
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208
Query: 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALMVF 375
L + R A + L ++ +
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW------VS 429
E+ + + L+ E A+ +L + L
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--- 486
+ + L+ +DV L+ + R + +G + + LL
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMG-NQVFPEVTRLLTSHTGN 386
Query: 487 ---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWI 542
SE A + L ++ + ++ L + S KA E A +L
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446
Query: 543 LCCHSE 548
+ E
Sbjct: 447 MWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99 bits (247), Expect = 4e-22
Identities = 68/438 (15%), Positives = 140/438 (31%), Gaps = 42/438 (9%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
QD Q +++ C + + + GG+ +V LL S N Q AA L L+
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
+ ++ V L+ + + ++ L LSS K + AD +PV
Sbjct: 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPV 131
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI-------------YGGMPALV 345
L ++ P G + + +AT L N+ G + +L+
Sbjct: 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD-----DEPFDARQIEDILVMLLK 400
Y+ + R + + + L + E
Sbjct: 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251
Query: 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVR------EYLIL 454
+K++ + N S W+ H++A + + L+ + D L
Sbjct: 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
+ +K K +G+ + LL + L++ ++ +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMG 369
Query: 515 AGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
P + +LL + S+ A + + L + S+ + + L +
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 569 SGG-PKGQDASAMALTKL 585
S PK +A+ + L+ +
Sbjct: 430 SSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.3 bits (191), Expect = 4e-15
Identities = 66/444 (14%), Positives = 128/444 (28%), Gaps = 43/444 (9%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
I + +L S Q +G + H Q E +Q + + LV L N+QQ
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1619 AVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLS-------- 1667
A AL + GI E ++ + LS
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 1668 -------NVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQ 1720
+ + A L DA
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 1721 AGVIDALLDLLRSH----QCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTR 1776
+G+ID+L+ +++ +C++ S + +N R L + T
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 1777 SESGKLL-----------AALALGDLSQHEGLARASASVSACRALISLLEDQSTDE---- 1821
S L + + + A R ++L+ D
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303
Query: 1822 -MKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ +M S ++ + G+ + LL S N++V A L + +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363
Query: 1881 LQEYVSNELIRSLTAALERELWST---ATINEEVLRTLHVIFMNFPKLHTSEAATLCIPH 1937
L + N++ +T L +T I T+ + + P+L ++ + +
Sbjct: 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423
Query: 1938 LVGALKS-GSEAAQGSVLDTLCLL 1960
++ +S S A + L +
Sbjct: 424 IINLCRSSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 4e-13
Identities = 59/465 (12%), Positives = 123/465 (26%), Gaps = 34/465 (7%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
I + L E++Q I Q + +K + GGI LV LL + +Q ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
AA L L S + + + LL+ G L + + D
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
+ L + M+ + + A LR+L SS + ++
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-----SSADAGRQ 178
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
+ + S+ + +A + + ++ + + R +
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775
N A + + S L ++P + + D + ++
Sbjct: 239 N-----AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293
Query: 776 EGTSEGKKNASRALHQLL----KHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVAD 831
+ + A Q L G + + + + A
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353
Query: 832 ALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD------KAIEIL 885
L ++ + + L + A +
Sbjct: 354 LLSNMSRHPLLHR------------VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 886 SRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L QP + SS + + + S+S + LL
Sbjct: 402 RNLMASQPQLA--KQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 2e-09
Identities = 51/404 (12%), Positives = 121/404 (29%), Gaps = 44/404 (10%)
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
+ ++ + + C ++ + + + GI L+ LL ++ Q+ A
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 497 LIAILTEQVDDSKWAITAAGGIPPLVQL-LEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ L + +K GI V L G+ + ++ +LW L E +
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 556 --------------SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS--------AT 593
S + P+ + L L A
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186
Query: 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA-----------NKGLRSL 642
I+ L+A + +S+ V + + + +S
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246
Query: 643 VQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN---TQMVATQS 699
++ +++ G L + + + L+ + + A
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306
Query: 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759
A S+ + +++ + E + + +L ++ + D + + L+N+ P +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-H 365
Query: 760 EVLLEDVVSALTRVLAEGTS------EGKKNASRALHQLLKHFP 797
V+ V +TR+L T + +A + L+ P
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 3e-09
Identities = 61/507 (12%), Positives = 141/507 (27%), Gaps = 69/507 (13%)
Query: 1391 IQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLVSGTNHRLVE 1448
I + + S + D+ + ++ + + LV L+ N + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQ 62
Query: 1449 ATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARS 1508
A AL L T KL+ + I + LL +A +S+ +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 1509 SDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLE 1568
A + L ++ P E
Sbjct: 123 ELIADALPVLADRVIIP-----------------------------FSGWCDGNSNMSRE 153
Query: 1569 SPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIST 1628
+ T L +L + + +Q + + ++ + + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL-----------------MAYVQN 196
Query: 1629 SWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKM 1688
+ D + V+ + + + N
Sbjct: 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN-------AYTEKSSTGC 249
Query: 1689 LHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA-- 1746
+ + + + L E T+ + + + I L+L+ + + T A
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309
Query: 1747 -LFNNGRIRQMKVSKYAIA---PLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
L + + +S+ L Q Q+ + A L ++S+H L
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVM 368
Query: 1803 SVSACRALISLLED-----QSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELL 1857
+ LL +++++ A ++N + + + + + L
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428
Query: 1858 LST-NAEVAGQAALLTKFLFSNHTLQE 1883
S+ + + A A LL ++S+ LQ
Sbjct: 429 RSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 5e-09
Identities = 52/472 (11%), Positives = 129/472 (27%), Gaps = 33/472 (6%)
Query: 1346 GNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSI 1404
G + + LSS + + A + F + I L+ L++S
Sbjct: 1 GLTIPKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN 59
Query: 1405 VVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTP 1463
V ++A A L + + V L+ T + ++ + L+
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 1464 RKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLL 1523
K +++ + P I +S ++R ++ L
Sbjct: 120 LKEELIADAL-----------PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR 168
Query: 1524 QPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLT 1583
+ G+ + I + + + + + + +L E+ T
Sbjct: 169 NLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228
Query: 1584 HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEI 1643
E+ ++ T+ + ++N E+ + + + I
Sbjct: 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288
Query: 1644 AKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV------VLVKMLHSTLESTI 1697
++ + A L+ + ++ + + ++L S +
Sbjct: 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348
Query: 1698 TVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQC-----EETSGRLLEALFN--- 1749
+ + + ++ V + LL SH E+ + N
Sbjct: 349 RSGASL--LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406
Query: 1750 -NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARA 1800
++ + S + + S A L L D+ + L
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWSSKELQGV 456
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 5e-09
Identities = 59/472 (12%), Positives = 138/472 (29%), Gaps = 33/472 (6%)
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSS 1361
G +P V LS+ E + + + S + + G + L +L S +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG--ICKLVDLLRSPNQ 58
Query: 1362 LELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDE 1420
+++ AA L ++F + I+ +SL++ + ++ + L
Sbjct: 59 -NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117
Query: 1421 QQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDL 1480
+++ D + +L V + ++ ++ G + N
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD----PEVFFNATGCLRNLSSA 173
Query: 1481 LPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALV 1540
+ + + + +A S K VE VL + S
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL--HNLSYRLDAEVPTRYR 231
Query: 1541 NILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNA 1600
+ ++ T K + F + L + +A
Sbjct: 232 QLEYNARNAYTEKSSTGC-------FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 1601 VVPLVQLAGIG---ILNLQQTAVKALEKISTSWPKAVADAGGIFE--IAKVIIQDDPQPP 1655
+ + L G S + + I +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 1656 HSLWESAALVLSNVLRF--NTEYYFKVPVVVLVKMLHS------TLESTITVALNALLIH 1707
+ S A +LSN+ R + ++L S E ++ A +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404
Query: 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQM 1756
+ A+Q + +++ +++L RS E + LL ++++ ++ +
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGV 456
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 3e-06
Identities = 53/458 (11%), Positives = 124/458 (27%), Gaps = 26/458 (5%)
Query: 1222 LDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLS 1281
+ +YLS + + F + + L + +L+ +L ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1282 AARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECEL-EVALVALVKLTSGNTSKAC 1339
AA AL L F + K + V +L E+ + L L+S + K
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 1340 LLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQ 1399
L+ D L + + S + +++ + L +L
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNM-----------SREVVDPEVFFNATGCLRNLSS 172
Query: 1400 SDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGK 1459
+D L Q + + + ++ + +
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232
Query: 1460 DRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLF 1519
+ + + + S SDA + L
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292
Query: 1520 MVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGT 1579
+ + + + L + + + L+S + + + G
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352
Query: 1580 ELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN------LQQTAVKALEKISTSWP-- 1631
LL+++ + + + +L N + +A + + S P
Sbjct: 353 SLLSNMSRHPLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL 411
Query: 1632 -KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSN 1668
K + + I + E+A L+LS+
Sbjct: 412 AKQYFSSSMLNNIINLCRSSASP---KAAEAARLLLSD 446
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 4e-06
Identities = 44/435 (10%), Positives = 101/435 (23%), Gaps = 25/435 (5%)
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANL-LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKK 783
+ ++ + + + D +V + L +L ++
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 784 NASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTK 843
A+ AL L+ + ++L+ ++ + + +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 844 QGLNFTYPPWAALAEVPSSIEP---LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFL 900
+ + P A +P S P + A L L
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG---RQT 179
Query: 901 MARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960
M S + + + R ++ C H ++ + L Y +
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239
Query: 961 MMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRN 1020
+ SS + E + + +L L+ S
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFE-------------DTEGIWISALFLAILFQ 1067
A S L S + + + S L
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359
Query: 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASL-----VCSGSKGIILAIANSG 1122
++ ++ P + LL S ++ + + + +S
Sbjct: 360 RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419
Query: 1123 AVAGLITLIGHIESD 1137
+ +I L S
Sbjct: 420 MLNNIINLCRSSASP 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (250), Expect = 1e-22
Identities = 75/462 (16%), Positives = 154/462 (33%), Gaps = 51/462 (11%)
Query: 216 GGVDIIVGLLSSDNAAAQSNAASLLARLM-LAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
V+ IV ++S+N +Q A +L+ I +I +G + V +G+ +
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
++ +A AL ++S + + KAVV +P I + + A AL
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFI---------SLLASPHAHISEQAVWAL 123
Query: 335 ANIYGGMPALVVYLG---------ELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385
NI G A + L P L+ + L + L +
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183
Query: 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445
QI LV LL +D +++ + G + V L+ L+
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243
Query: 446 ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505
+ + ++ + + + + + SLL Q+ A ++ +T
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303
Query: 506 DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFL 564
D + G +P LV +L K ++ AA + + + + G + +
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
LL + K A++ + +AA+ + L++++ +
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC------------------- 404
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
GL + + NE + + +++ FS
Sbjct: 405 ------------GGLDKIEALQRHENESVYKASLNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 4e-14
Identities = 67/452 (14%), Positives = 141/452 (31%), Gaps = 55/452 (12%)
Query: 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184
+ ++ + S + +++ A +A ++ S + + + G++P L
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLS---REKQPPIDNIIRAGLIPKFVSFL--GK 67
Query: 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
+ +Q AL N+ +A ++ G + + LL+S +A A L +
Sbjct: 68 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127
Query: 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
VI GA+ L+ L+ + ++ L S + K D
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--- 184
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADI 364
+ +P LV L +
Sbjct: 185 -------------------------------AVEQILPTLVRLLHHNDPEVLADSC---- 209
Query: 365 IGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFL 424
+A+ E + + LV LL + +V + + G
Sbjct: 210 -----WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 264
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
+Q V A A V L+T ++++ +++ + + + + L+ +L
Sbjct: 265 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 324
Query: 485 LSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543
+ + Q+ A I T + + G I PL+ LL A K +V + +
Sbjct: 325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384
Query: 544 C------CHSEDIRACVESAGAVPAFLWLLKS 569
+E + +E G + L +
Sbjct: 385 FQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.4 bits (147), Expect = 6e-10
Identities = 49/374 (13%), Positives = 114/374 (30%), Gaps = 12/374 (3%)
Query: 1387 ASECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLVSGTNH 1444
+ ++ ++ + S+ A A +LL + + ++ + ++ V + T+
Sbjct: 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70
Query: 1445 -RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSS 1503
+ + AL + + + +V G I + LL + + +
Sbjct: 71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130
Query: 1504 AIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALV---NILEKPQSLVTLKLTPSQVI 1560
+ R + LL L+ L + L + ++ Q++
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190
Query: 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAV 1620
L+ L + +++L + + ++ K VVP + T
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 1621 KALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTE----Y 1676
+ V P ++ + A +SN+ +
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310
Query: 1677 YFKVPVVVLVKMLHSTLESTITVALNALL-IHERTDASSAEQMTQAGVIDALLDLLRSHQ 1735
V LV +L T A A+ + G+I+ L++LL +
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 370
Query: 1736 CEETSGRLLEALFN 1749
+ +L+A+ N
Sbjct: 371 -TKIIQVILDAISN 383
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.5 bits (124), Expect = 4e-07
Identities = 54/376 (14%), Positives = 124/376 (32%), Gaps = 17/376 (4%)
Query: 390 QIEDILVMLLKPHDNKLVQERVLEAMASL--YGNIFLSQWVSHAEAKKVLIGLITMA-TA 446
+EDI+ + +N Q + +A L + A + + +
Sbjct: 14 SVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
++ +LT + +A+ I ISLL E AV + +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131
Query: 507 DSKWAITAAGGIPPLVQLL-----EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561
+ + G I PL+ LL + L LC + +P
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
Query: 562 AFLWLLKSGGPKGQDASAMALTKLIRAADSATINQL----LALLLGDSPSSKAHVIKVLG 617
+ LL P+ S A++ L + + + L+ +++ ++
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251
Query: 618 HVLTMALQEDLVQKGSAANKGLRSL-VQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676
+ + Q + G ++ +L + Q+ A ++++ + RQD +
Sbjct: 252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 311
Query: 677 TDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736
+V + +L+ ++A A+ + + + + G ++PL+ L
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL--VHCGIIEPLMNLLSAK 369
Query: 737 SIDAAETAVAALANLL 752
+ + A++N+
Sbjct: 370 DTKIIQVILDAISNIF 385
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 8e-07
Identities = 77/467 (16%), Positives = 150/467 (32%), Gaps = 68/467 (14%)
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIK-LGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCS 1490
V+ +V+ ++ N A K L +++ P +++AG+I + L
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL--------- 65
Query: 1491 TIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLV 1550
+D + I Q + AL NI S
Sbjct: 66 ----------------GKTDCSPI-----------------QFESAWALTNIASG-TSEQ 91
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAG 1609
T + I +S L SP I + L ++ F+ + A+ PL+ L
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 1610 IGILNLQQTAVK--------ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWES 1661
+ L+ L + P A + + +++ +DP+ +
Sbjct: 152 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 211
Query: 1662 AALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQA 1721
+ + K V LVK+L +T +T AL A+ +++ A
Sbjct: 212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 271
Query: 1722 GVIDALLDLLRSHQC---EETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSE 1778
G + LL + + +E + + Q V+ + L
Sbjct: 272 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV---LSKADF 328
Query: 1779 SGKLLAALALGDLSQHEGLARASASVS--ACRALISLLEDQSTDEMKMVAICALQNFVMC 1836
+ AA A+ + + + + V L++LL + T ++ V + A+ N
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQA 387
Query: 1837 SRTN------RRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877
+ + E GG+ ++ L N V + L + FS
Sbjct: 388 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.8 bits (117), Expect = 3e-06
Identities = 61/482 (12%), Positives = 131/482 (27%), Gaps = 76/482 (15%)
Query: 79 IGSHA----QAMPLFISILRSGTPLAKVNVAATLSVLCKDED--LRLKVLLGGCIPPLLS 132
IGS+ ++ + + S +++ L E ++ G IP +S
Sbjct: 4 IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63
Query: 133 LLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQG 192
L + +Q
Sbjct: 64 FLGKTD------------------------------------------------CSPIQF 75
Query: 193 FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIP 252
AL N+ +A ++ G + + LL+S +A A L +
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 253 TVIDSGAVKALVQLVG----QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIG 308
VI GA+ L+ L+ + L L A +P L+
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 309 AIVAPSKEC---MQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365
+ E G R + G+ +V L ++ P + + I
Sbjct: 196 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 255
Query: 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS 425
+ ++ L + +E G
Sbjct: 256 NIVTGTDEQTQKVIDAGALAVFPSL--------LTNPKTNIQKEATWTMSNITAGRQDQI 307
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG 484
Q V + L+G+++ A ++ ++T V + I+ L++LL
Sbjct: 308 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367
Query: 485 LSSEQHQEYAVQLIAILTEQVDDS------KWAITAAGGIPPLVQLLEAGSQKAREVAAH 538
+ + + I+ + + + I GG+ + L ++ + + +
Sbjct: 368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 427
Query: 539 VL 540
++
Sbjct: 428 LI 429
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.2 bits (105), Expect = 6e-05
Identities = 57/420 (13%), Positives = 135/420 (32%), Gaps = 39/420 (9%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
+ + + S+ + + A QA L+ + I I +G + ++ +G +
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC---- 70
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR 1200
+ E + + ++ G++ + + + +P +
Sbjct: 71 --------------SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 116
Query: 1201 -----LLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN---- 1251
L I + ++ + G +D L L++ + SN
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176
Query: 1252 -PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVD 1310
+A L L+ +LH + A+ L D N + + + V P +
Sbjct: 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236
Query: 1311 MLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE 1370
L A+E + + + T + D L +L++ + K
Sbjct: 237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWT 295
Query: 1371 LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL---DDEQQVELVE 1427
+ I G I + + L+ ++ + A A EQ V LV
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355
Query: 1428 GYDVVDLLVRLVSGTNHRLVEATVCALIKLGK------DRTPRKLQMVKAGIIDNCLDLL 1481
+++ L+ L+S + ++++ + A+ + + + + + + G +D L
Sbjct: 356 -CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 414
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.4 bits (103), Expect = 1e-04
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
+ +F S+L + + T+S + +D +V+ G +P L+ +L T+K
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLC-- 202
AA A+ +SGG + + V G++ L + L+ K+ + + + A+ N+
Sbjct: 334 AAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLLSAKDTK---IIQVILDAISNIFQA 387
Query: 203 ----GDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
G+ + E GG+D I L +N + + +L+ +
Sbjct: 388 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (101), Expect = 2e-04
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 8/205 (3%)
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPC 684
D+ N + +V+ +NS+N E+Q A L S +Q ++ ++
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
+ L ++ + +SA AL ++ T + + + G + I L + +E
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGT---SEQTKAVVDGGAIPAFISLLASPHAHISEQ 118
Query: 744 AVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR--ALHQLLKHFPVGD 800
AV AL N+ D V+ + L +LA L +
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178
Query: 801 VLKGNAQCRFVVLTLVDSLNAMDMN 825
++ TLV L+ D
Sbjct: 179 PAPPLDAVEQILPTLVRLLHHNDPE 203
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 0.002
Identities = 48/380 (12%), Positives = 119/380 (31%), Gaps = 22/380 (5%)
Query: 1080 IIPALALLLRSDEVID-RFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
+IP L + +F +A A+ ++ SG+ A+ + GA+ I+L+ +
Sbjct: 57 LIPKFVSFLGKTDCSPIQFESAWALTNI-ASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVA 1198
+ D+ + A + L+ + G
Sbjct: 116 SEQAVWALGNIAGDGS---------AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166
Query: 1199 VRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSL-SPQDSTEATITELFRILFSNPDLIRY 1257
L+ + + + A L L + L P+ ++ + N +
Sbjct: 167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 226
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASE 1317
+ + + + + + + A+ +L+
Sbjct: 227 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 286
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIM-F 1376
+ A + +T+G + ++ L+ L +LS K A +
Sbjct: 287 NIQKEATWTMSNITAGRQDQIQ--QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344
Query: 1377 GNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL-------DDEQQVELVEGY 1429
G + I + I+PL++L+ + + +++ + A + + E+ ++E
Sbjct: 345 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 404
Query: 1430 DVVDLLVRLVSGTNHRLVEA 1449
+D + L N + +A
Sbjct: 405 GGLDKIEALQRHENESVYKA 424
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.1 bits (227), Expect = 2e-19
Identities = 83/459 (18%), Positives = 158/459 (34%), Gaps = 45/459 (9%)
Query: 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQNNDISVRAS 278
+ L+SD+ Q +A R +L+ P VI +G V LV+ + +N ++
Sbjct: 81 MTQQLNSDDMQEQLSATVKF-RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 139
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
AA AL ++S + K VV AD VP+ I + S E + A AL N+
Sbjct: 140 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV---------KEQAIWALGNVA 190
Query: 339 GGMPAL-VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVM 397
G L + P L ++ + A D + L
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 398 LLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD---VREYLIL 454
L K + + V A Y + + + ++ L+ + + + V+ +
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
++ + + + + L LL E ++ A I+ +T + A+
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 370
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE---SAGAVPAFLWLLKSGG 571
A IPPLV+LLE K ++ A + + S G + LL+
Sbjct: 371 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 430
Query: 572 PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631
+ + + AL +++ ++ G + + A I+ G
Sbjct: 431 NRIIEVTLDALENILKMGEA------DKEARGLNINENADFIEKAG-------------- 470
Query: 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670
G+ + + N++ E A ++ F +D
Sbjct: 471 ------GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 503
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.0 bits (193), Expect = 2e-15
Identities = 53/354 (14%), Positives = 120/354 (33%), Gaps = 12/354 (3%)
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
++ +LT + + + + + L I LL S + +E A+ + +
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
D + + + P++ L + A L LC + + A+P L
Sbjct: 195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 254
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLG-----DSPSSKAHVIKVLGHVLT 621
+ S + + A++ L A + + S S L V
Sbjct: 255 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314
Query: 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIV 681
+ DL + L +L +L+S E ++ A ++++ + + ++ ++
Sbjct: 315 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 374
Query: 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA 741
P ++LL ++ A+ S + +++G +KPL L + +
Sbjct: 375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434
Query: 742 ETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
E + AL N+L + E ++ + G E + ++
Sbjct: 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGME-------KIFNCQQN 481
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.0 bits (180), Expect = 9e-14
Identities = 71/443 (16%), Positives = 147/443 (33%), Gaps = 29/443 (6%)
Query: 114 DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVV 173
D + L +P + L S+ + +A ++ S + + + + GVV
Sbjct: 65 SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS---REHRPPIDVVIQAGVV 121
Query: 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQ 233
P L + + + Q ++Q AL N+ + ++A V + + LL + + +
Sbjct: 122 PRLVEFM--RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 179
Query: 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKA 293
A L + D V+ A++ ++ L +N S+ +A L L
Sbjct: 180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ 238
Query: 294 KKAVVAADGVPVLIGAIVAPSKECMQ--GQRGQALQGHATRALANIYGGMPALVVYLGEL 351
V + +P L I + E + L A+ + +
Sbjct: 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 298
Query: 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERV 411
+S + P +G + + Q L +LL + +E
Sbjct: 299 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-------ALRLLLSSPKENIKKEAC 351
Query: 412 LEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE---YLILSLTKLCRREVGIWE 468
GN Q V A L+ L+ +A ++ + I + + + I
Sbjct: 352 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 411
Query: 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA-----------ITAAGG 517
+ + I+ L LL ++ + E + + + + + K A I AGG
Sbjct: 412 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 471
Query: 518 IPPLVQLLEAGSQKAREVAAHVL 540
+ + + + K E A ++
Sbjct: 472 MEKIFNCQQNENDKIYEKAYKII 494
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.2 bits (139), Expect = 7e-09
Identities = 70/380 (18%), Positives = 139/380 (36%), Gaps = 16/380 (4%)
Query: 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQA--VPPLVDMLSA 1314
Y L Q+ L+ +LSA Q+ E+ D+ QA VP LV+ +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 1315 ASECEL-EVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCF 1373
L A AL + SG +++ ++ +D + + ++L + S ++ L
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVV--VDADAVPLFIQLLYTGSVEVKEQAIWALGN 188
Query: 1374 IMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL-DDEQQVELVEGYDVV 1432
+ + + ++P++ L S+ ++ +A L + Q + +
Sbjct: 189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248
Query: 1433 DLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTI 1492
L +L+ + + C I D +Q V I L L S L T
Sbjct: 249 PTLAKLIYSMDTETLVD-ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307
Query: 1493 AEL--FRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLV 1550
A I+T + + A ++ L ++L P ++ + A + NI +
Sbjct: 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNITAGNTEQI 365
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTK----NAVVPLVQ 1606
+ + +I PL+ LE + ++ +++ + + DI + PL
Sbjct: 366 Q-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 424
Query: 1607 LAGIGILNLQQTAVKALEKI 1626
L I + + + ALE I
Sbjct: 425 LLEIADNRIIEVTLDALENI 444
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/372 (14%), Positives = 102/372 (27%), Gaps = 13/372 (3%)
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLV-SGTNH 1444
+ + + + SD SA F ++L + +++V VV LV +
Sbjct: 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 134
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSA 1504
L AL + + + +V A + + LL + + S
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194
Query: 1505 IARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLL 1564
R + L +A L N+ + + SQ + L
Sbjct: 195 DYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLA 252
Query: 1565 SFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALE 1624
+ S +++L + + L QT
Sbjct: 253 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 312
Query: 1625 KISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV---- 1680
+ + + P ++ + A +SN+ NTE V
Sbjct: 313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 372
Query: 1681 ---PVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE 1737
P+V L+++ + A++ + G I L DLL
Sbjct: 373 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-N 431
Query: 1738 ETSGRLLEALFN 1749
L+AL N
Sbjct: 432 RIIEVTLDALEN 443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (123), Expect = 6e-07
Identities = 61/349 (17%), Positives = 123/349 (35%), Gaps = 8/349 (2%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+P LV+ +R A LT I G+ ++ +A + + L +
Sbjct: 121 VPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 179
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIK 1296
E I L + + D Y +++ ++ + + +A L L +
Sbjct: 180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 239
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
D + QA+P L ++ + L A A+ L+ G ID + + L ++L
Sbjct: 240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ--AVIDVRIPKRLVELL 297
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS-DLSIVVESAVCAFER 1415
S S+L + I+ GN I + + L L+ S +I E+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 1416 LLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ---MVKAG 1472
+ +Q++ V +++ LV+L+ ++ + A+ R +V G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417
Query: 1473 IIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMV 1521
I DLL +A + + + + + + I E +
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 466
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.7 bits (117), Expect = 3e-06
Identities = 70/385 (18%), Positives = 135/385 (35%), Gaps = 25/385 (6%)
Query: 1515 VEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAI 1574
V P + ++ + Q A AL NI + + + + + + L + S +
Sbjct: 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLYTGSVEV 178
Query: 1575 QQLGTELLTHLLAQEHFQQDIT-TKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKA 1633
++ L ++ +D NA+ P++ L +L +TA L + K
Sbjct: 179 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR-GKKP 237
Query: 1634 VADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTL 1693
D + + + + A +S + E V V + K L L
Sbjct: 238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 297
Query: 1694 ESTITVALNALLIHERTDASSAEQMTQ----AGVIDALLDLLRSHQ---CEETSGRLLEA 1746
T+ L + + TQ AGV+ AL LL S + +E +
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 1747 LFNNGRIRQMKVSKYAIAPLSQYLL--DPQTRSESGKLLAALALGDLSQHEGLARASASV 1804
N Q + I PL + L + +T+ E+ ++ + G L + + + R S
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII-RYLVSQ 416
Query: 1805 SACRALISLLEDQSTDEMKMVAICALQNFV-----------MCSRTNRRAVAEAGGILVV 1853
+ L LLE + V + AL+N + + N + +AGG+ +
Sbjct: 417 GCIKPLCDLLEIADN-RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 475
Query: 1854 QELLLSTNAEVAGQAALLTKFLFSN 1878
+ N ++ +A + + F
Sbjct: 476 FNCQQNENDKIYEKAYKIIETYFGE 500
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (115), Expect = 5e-06
Identities = 57/416 (13%), Positives = 135/416 (32%), Gaps = 49/416 (11%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITL--------- 1130
+P + L SD++ ++ A ++ + I + +G V L+
Sbjct: 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 136
Query: 1131 -------IGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVD 1183
+ +I S T + + V +++ E+++ + + +
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 196
Query: 1184 ILRPIPDRPGAPPV-------------AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
+ P + A L+ + G + L L K +
Sbjct: 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 256
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL- 1289
++ + + + I+ + +L+ +L S + A RA+ +
Sbjct: 257 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLL 1349
+ + +P L +LS+ E + A + +T+GNT + + D + L
Sbjct: 317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---L 373
Query: 1350 ESLYKILSSNSSLELKRNAAE----LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIV 1405
L + + K+ A II ++ CI+PL L++ + +
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 433
Query: 1406 VESAVCAFERLL------------DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEA 1449
+E + A E +L + + + +E ++ + N ++ E
Sbjct: 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 489
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 3e-04
Identities = 67/464 (14%), Positives = 129/464 (27%), Gaps = 59/464 (12%)
Query: 1557 SQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQ--QDITTKNAVVPLVQLAGIGIL- 1613
Q + + L S Q T +L++EH + V LV+
Sbjct: 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 134
Query: 1614 NLQQTAVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
LQ A AL I++ V DA + +++ + E A L NV
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS----VEVKEQAIWALGNVA 190
Query: 1671 RFNTEY----YFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDA 1726
+T+Y + ++ + +S S I A L R + + +
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 1727 LLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAAL 1786
L L+ S E + + ++ + + + + S + A
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 1787 ALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
A+G++ L + + LL + +K A + N + +AV +
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 370
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTAT 1906
A I + +LL + +A S + + L+
Sbjct: 371 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG------------- 417
Query: 1907 INEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWST 1966
CI L L+ LD L +
Sbjct: 418 ---------------------------CIKPLCDLLEIADNRIIEVTLDALENILKMGEA 450
Query: 1967 MPIDVAKSQAMIA-----AEAIPILQMLMKTCPPSFHERADSLL 2005
+ A A + + + +E+A ++
Sbjct: 451 DKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.003
Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 6/186 (3%)
Query: 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT 692
S + L + Q LNS + + Q A + S + V P +
Sbjct: 72 SQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN 131
Query: 693 Q--MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
Q M+ ++A AL ++ T + + V I+L T S++ E A+ AL N
Sbjct: 132 QPEMLQLEAAWALTNIASGT---SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 188
Query: 751 LL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
+ D VL + + + + + A+ L L + +Q
Sbjct: 189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248
Query: 810 FVVLTL 815
+ L
Sbjct: 249 PTLAKL 254
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 8e-11
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA 2063
L V ++ NL G ++ + +L + P ++TK + S++PEW E F +
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 2064 FDVPPKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGV 2103
K ++L + + ++ +G ++ I ++ GV
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 115
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 58.2 bits (140), Expect = 3e-10
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP 2067
G L V + L+ + + + +LT + +PEW E F F V
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFI--FTVS 67
Query: 2068 PKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEG-VYSGLFNLNHDNNKDSSSRTLEI 2125
+L K+ + +G+ TI ++ V EG + +N+ D + + +
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWV 124
Query: 2126 EIIW 2129
+ +
Sbjct: 125 ALSF 128
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 1e-09
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 2012 LTVTIKRGNNLKQT-----MGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAF 2064
TV + R + + + T + + L I P ++T+ ++ I+P W E F +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-I 63
Query: 2065 DVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLE 2124
P + L I N TLG T + + F N +
Sbjct: 64 LDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF---NQVTEMVLEMS 120
Query: 2125 IEIIWS 2130
+E+ S
Sbjct: 121 LEVASS 126
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.7 bits (131), Expect = 4e-09
Identities = 13/102 (12%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWA 2063
LTV + + +L G ++ + ++ + + ++T V + + + E F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV-- 72
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTE 2101
FD+P + + + ++ +G++ + +
Sbjct: 73 FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 6e-09
Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 8/216 (3%)
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS-LLKSESTDTRKAA 145
P ++ + L+ LC++ D + L+ L++ + R A
Sbjct: 20 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79
Query: 146 AEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205
A+ + S + + + G + L L+ + V+ A+ L ++
Sbjct: 80 AQLIGTCS----QNVAAIQEQVLGLGALRKLLRLLDRDA--CDTVRVKALFAISCLVREQ 133
Query: 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265
+ L G +++ + + +A LL L++ + T+ G V+ LV
Sbjct: 134 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 193
Query: 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
LV + AL +L + + + +
Sbjct: 194 LV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 38/224 (16%)
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV-QLLEAGSQKAREVAAHVLWILC 544
+ +Q +E A++L+A L E +D + G+ LV + LEAG+ R AA ++
Sbjct: 29 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS 87
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+ I+ V GA+ L LL D
Sbjct: 88 QNVAAIQEQVLGLGALRKLLRLL------------------------------------D 111
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
+ +K L + + +++ G L++ + ++ + +A +L +L
Sbjct: 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171
Query: 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708
+ G+L + +V + L+ + AL +L
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 8e-05
Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 17/218 (7%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVG-LLSSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
L +LC + D + G+ ++VG L + A + AA L+ V+
Sbjct: 40 LLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL 98
Query: 256 DSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK 315
GA++ L++L+ ++ +VR A A+ L + + DG VL+ A+ +
Sbjct: 99 GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 158
Query: 316 ECMQGQRGQAL----QGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYA 371
+ + G + LV + ++ V + +L
Sbjct: 159 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLV-- 214
Query: 372 LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409
+ + R+ E L LL+ L Q
Sbjct: 215 -------TDFPQGVRECREPELGLEELLRHRCQLLQQH 245
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 9e-09
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA 2063
L VTI +L ++ N + ++ R+TK V ++ P+W + F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI-- 71
Query: 2064 FDVPP----KGQKLHIICKSKNTFGKST---LGKVTIQIDKVVTEGV 2103
+ + + L I + + LG++ I+++ + +
Sbjct: 72 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-07
Identities = 139/1104 (12%), Positives = 283/1104 (25%), Gaps = 67/1104 (6%)
Query: 269 QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQG 328
++D R A + L K V +++ + + E +Q
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE---------VQN 63
Query: 329 HATRALANIYG-----GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDD 383
A + L + + +V L S + IG + SG
Sbjct: 64 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123
Query: 384 EPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM 443
++I L + ++ VQ L+ MA + H L+ +T
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503
VR+ I++L L + LL L S +Q IA ++
Sbjct: 184 PRLAVRKRTIIALGHLVM---SCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240
Query: 504 QVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW-ILCCHSEDIRACVESAGAVPA 562
Q IP +V+ + RE + +++ V + +
Sbjct: 241 QAGHRIGEYLEKI-IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTI--INI 297
Query: 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622
L L P + A +Q D V + L
Sbjct: 298 CLKYLTYD-PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 356
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
+ +L+ E + L + + L +
Sbjct: 357 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDA-- 414
Query: 683 PCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE 742
M + M+ +Q + AL + K K+ + L+ + +
Sbjct: 415 --MEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN-MLTELVNVLPGALTQHIP 471
Query: 743 TAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVL 802
V + L+D ++ + ++ L+ ++ + H ++ V
Sbjct: 472 VLVPGIIFSLNDKSSSSNLKIDA--------LSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 803 KGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862
+ + + + K T A
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF-DATPYIKDLFTCTIKRLKAADIDQEV 582
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGD---FLMARSSSIGALADRIMHSSS 919
E + C+ + L D L L + L + +
Sbjct: 583 KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR 642
Query: 920 LEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPR 979
+ G L K + + L L Y+ + + +
Sbjct: 643 PVLGEGVPILASFLRKNQRALKLGTLSALDILIK-NYSDSLTAAMIDAVLDELPPLISES 701
Query: 980 GYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLA 1039
+ L ++ +L + +R+ + A+ L
Sbjct: 702 DMHVSQMAISFLTTLAKVYPSSLS-KISGSILNELIGLVRSPLLQGGALSAMLDFFQALV 760
Query: 1040 SYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
T + L + + + + ++A + +
Sbjct: 761 V---------TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 811
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIE-SDTPNLVALSEEFFLVRYPDEVV 1158
+ + A+ L + HI+ S L ++ E F P E V
Sbjct: 812 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF--SSPSEEV 869
Query: 1159 LEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
+ +P ++ + P R +++ + +
Sbjct: 870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN- 928
Query: 1219 AGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGA 1278
L K+ + + + L ++ +P+ + L +L L GS A
Sbjct: 929 --IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL--------LPRLKGYLISGSSYA 978
Query: 1279 RLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKA 1338
R S A+ L + + L + +L V VALV S +K
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE---DPDLNVRRVALVTFNSAAHNKP 1035
Query: 1339 CLLTDIDGNLLESLYKILSSNSSL 1362
L+ D+ +L LY L
Sbjct: 1036 SLIRDLLDTVLPHLYNETKVRKEL 1059
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 2e-06
Identities = 96/719 (13%), Positives = 196/719 (27%), Gaps = 56/719 (7%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
I LL + S D R A L L D + + VV + L KN +
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTE----LQKDSIKLDDDSERKVVKMILKLLEDKNGE 60
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL--- 243
VQ L L Y T+ VD + + SD + ++ L +
Sbjct: 61 ---VQNLAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGE 113
Query: 244 --MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
+ G ++ + L + + D+SV+ A D + + S+ +
Sbjct: 114 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-----LVN 168
Query: 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG------MPALVVYLGELSQSP 355
P ++ ++ R + + A L G + L+ L + + S
Sbjct: 169 FHPSILTCLLPQLTSPRLAVRKRTII--ALGHLVMSCGNIVFVDLIEHLLSELSK-NDSM 225
Query: 356 RLAAPVADIIGALAYAL----------MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
I A++ ++ + + + R+ K
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285
Query: 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465
V V + + ++ + + + D + +
Sbjct: 286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 345
Query: 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL 525
+ +R + L +++ E E+ + L + + + + A + LL
Sbjct: 346 V-----RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD-VFHAYLSLL 399
Query: 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
+ + + + V A +K K + LT+L
Sbjct: 400 KQTRPVQSWLCDPDAMEQ-GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL 458
Query: 586 IRAADSATIN------QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639
+ A + L D SS I L + + +
Sbjct: 459 VNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 518
Query: 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVAT 697
+V + + A V L + + + + D + +
Sbjct: 519 PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 578
Query: 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP-D 756
A+S + + ++ I L + + T V AL + P
Sbjct: 579 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK 638
Query: 757 IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTL 815
I +L + V L L + K AL L+K++ + L
Sbjct: 639 IDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-05
Identities = 16/75 (21%), Positives = 27/75 (36%)
Query: 75 ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134
+L + +P L SG+ A+ +V + D + LL CI L L
Sbjct: 953 GKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL 1012
Query: 135 KSESTDTRKAAAEAL 149
+ + R+ A
Sbjct: 1013 EDPDLNVRRVALVTF 1027
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 4e-07
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 2010 GCLTVTIKRGNNLK---QTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAF 2064
V IK L + T++ + ++TI +T+V+ ++ P + E FT+ +
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-Y 80
Query: 2065 DVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKV 2098
+P + LH S + F + +G+V I + +
Sbjct: 81 GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.1 bits (116), Expect = 4e-07
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWA 2063
G L V I R +L G ++ F +L + +T++ +++PE+ E F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF-- 72
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTE 2101
+D+ + L I + + +G + I
Sbjct: 73 YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 114
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 6e-07
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-------------RQTKVVSHSISP 2054
G L + I + NL + G ++ F ++ + G R+TK V S++P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 2055 EWKEGFTWA--FDVPPKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGVYSGLFNLN 2111
EW + + + L + + F + LG+V I + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 6e-07
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP 2067
G L V + + +L G ++ FC L +GN QT V +++PEW + FT+ +
Sbjct: 6 GILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTF--PIK 62
Query: 2068 PKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIE 2126
L + ++ LGKV I + + + LE++
Sbjct: 63 DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122
Query: 2127 IIW 2129
+I+
Sbjct: 123 LIY 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.6 bits (115), Expect = 7e-07
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAFD 2065
L V I + L GT++ + ++ + +TKV +++P + E + F
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE--QFTFK 91
Query: 2066 VP---PKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGVYSGLFNL 2110
VP G+ L + + F K +G+ + ++ V V +L
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.5 bits (112), Expect = 2e-06
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 2005 LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEW 2056
L LP G LTVTI + +NLK G ++ + + ++ + R+T + ++++P +
Sbjct: 13 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 72
Query: 2057 KEGFTWAFDVPP---KGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEGV 2103
E FDV P + L I + G + +G + + G
Sbjct: 73 NEALV--FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 121
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 6e-06
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 2010 GCLTVTIKRGNNLKQTM--GTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA 2063
G LTV I NLK+ G ++ + ++ + ++T + ++++P + E F+
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS-- 82
Query: 2064 FDVPP---KGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTE 2101
F+VP + ++ + + GK+ +GKV + + E
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 6/106 (5%)
Query: 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNG---PPRQTKVVSHSISPEWKEGFTWAFDV 2066
L VT G + + + ++ N QT + + W+EG
Sbjct: 26 AELFVTRLEAVTSNHD-GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 2067 P-PKGQKLHIICKSKNTFGKSTL-GKVTIQIDKVVTEGVYSGLFNL 2110
L + ++ + F + ++ G++ + +D + L
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.0 bits (103), Expect = 2e-05
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 2009 PGCLTVTIKRGNNL----KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSI-SPEWKEG 2059
P L V I G L K + + I RQT V++++ +P W
Sbjct: 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62
Query: 2060 FTWAFDVP-PKGQKLHIICKSKNTFGKST-LGKVTIQIDKVVTEGVYSGLFNLNHDNNKD 2117
F F+V P + + + ++ K+ +G+ TI + +L N
Sbjct: 63 FE--FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTI---PWNSLKQGYRHVHLLSKNGDQ 117
Query: 2118 SSSRTLEIEI 2127
S TL ++I
Sbjct: 118 HPSATLFVKI 127
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 43.7 bits (102), Expect = 3e-05
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 24/140 (17%)
Query: 2008 LPGCLTVTIKRGNNLKQT-------------MGTTNAFCRLTIGNGPPRQTKVVSHSISP 2054
G L + I +LK T + + L + + QT + SP
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 2055 EWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEG--VYSGLFNLN 2111
W + DV G+K+ + G + TIQ ++++ G + +L
Sbjct: 64 AW--HDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL- 119
Query: 2112 HDNNKDSSSRTLEIEIIWSN 2131
+ + I++ S+
Sbjct: 120 ----EPEGKVYVIIDLSGSS 135
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWAFD 2065
L V I + +L + + I P QTKV +++P + E T+ F
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE--TFQFS 75
Query: 2066 VPP---KGQKLHIICKSKNTFGKS-TLGKVTIQIDKVVTEG 2102
VP +KLH + F + +G+V + + E
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Score = 40.1 bits (93), Expect = 0.001
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 9/166 (5%)
Query: 127 IPPLLSLLKSESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKN 184
+ L L++ R+A A L E S + D+ ++I V + + L ++
Sbjct: 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRD 127
Query: 185 --KQDNVVQGFVTGALRNLCGDKDG-YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241
+ VVQ G L D+D + + + + + + AS L
Sbjct: 128 YLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR 187
Query: 242 R--LMLAFGDSIPTVIDSGAVKALVQLVGQ--NNDISVRASAADAL 283
L+ D TV + A ++ + + D VR + A L
Sbjct: 188 GDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2138 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.93 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.92 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.78 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.65 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.65 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.65 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.6 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.57 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.57 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.57 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.57 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.54 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.52 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.51 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.48 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.42 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.39 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.39 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.39 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.34 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.32 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.32 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.3 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.3 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.28 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.26 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.25 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.25 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.22 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.21 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.13 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.05 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.98 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 98.65 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.31 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.3 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.7 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.62 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.95 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.88 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.65 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.94 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.77 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 90.71 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 87.94 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 86.31 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-32 Score=348.80 Aligned_cols=506 Identities=20% Similarity=0.206 Sum_probs=408.2
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.++||.|+++|++++..++..|+.+|+.++.++..+..+... |+++.|+++|.+ +++++++.|+.+|.+++. +
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-----~ 90 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----C
Confidence 478999999999999999999999999999888888777765 679999999987 689999999999999995 5
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
..++..+++.|++|.|+++|.+++ +.++..|.++|.|+|.+++..+..+.+.|+++.|+.+|.+++++++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~Li~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHCCCHHHHHHHhCCCC---HHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHH
Confidence 678899999999999999997654 57999999999999999888888899999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.+++..+.+.+..+...|+++.++.++.+.....++..+..++.+++. +++.++.+.+.|+++.|+.++.+++..
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T d1jdha_ 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchh----
Confidence 999977777777788999999999999866777889999999999988 588889999999999999998876643
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
.+.++..+|.+++.. . . ..
T Consensus 243 -----~~~~a~~~l~~ls~~---------------------------------------~-~-~~--------------- 261 (529)
T d1jdha_ 243 -----LVQNCLWTLRNLSDA---------------------------------------A-T-KQ--------------- 261 (529)
T ss_dssp -----HHHHHHHHHHHHHTT---------------------------------------C-T-TC---------------
T ss_pred -----hhhhhhhHHHhcccc---------------------------------------c-c-ch---------------
Confidence 455666666655320 0 0 00
Q ss_pred CCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 401 s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
....++++.|+.++.+++..++..++.+|.+++.+++..+..+.+.++++.++
T Consensus 262 ---------------------------~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li 314 (529)
T d1jdha_ 262 ---------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp ---------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred ---------------------------hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHH
Confidence 01123456667777777788888999999999988788888899999999999
Q ss_pred HHhc--CCchhhHHHHHHHHHHHhhcCc---hhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 481 SLLG--LSSEQHQEYAVQLIAILTEQVD---DSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 481 ~LL~--s~d~~Vr~~Aa~aL~nLa~~s~---e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
.++. ++++.+++.++.+|++++.... ..+..+...++++.|+.+++.+ +..++..+++++++++.+ +..+..+
T Consensus 315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l 393 (529)
T d1jdha_ 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhh
Confidence 9884 5667889999999999986433 2455677889999999999876 567888999999999884 5677888
Q ss_pred HHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~ 634 (2138)
.+.|+++.|++++.++..+++..++........... .. ..++...+..++..++. .. ..+..+.
T Consensus 394 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~al~~la~---~~-~~r~~~~ 457 (529)
T d1jdha_ 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-VR-----------MEEIVEGCTGALHILAR---DV-HNRIVIR 457 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTT-BC-----------HHHHHHHHHHHHHHHTT---SH-HHHHHHH
T ss_pred hhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcc-cc-----------hHHHHHHHHHHHHHHcc---CH-HHHHHHH
Confidence 899999999999998888777777765443321110 00 11223334445554432 22 2234456
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
+.|+++.|+.++++++++++..++.+|++|+. +++.++.+.+.|++++|++++.++++.++..|+.+|.+|+
T Consensus 458 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999987 7889999999999999999999999999999999999874
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-32 Score=344.92 Aligned_cols=489 Identities=19% Similarity=0.213 Sum_probs=399.6
Q ss_pred hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHH-cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000124 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2138)
Q Consensus 123 ~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ive-aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nL 201 (2138)
..++||.|+++|+++|..++..|+.+|.+++. .+..+..++. .|+++.|+++|...+ +..+++.+.++|.++
T Consensus 15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~-----~~~~~~~~~~~~~~v~~l~~~L~~~~--~~~~~~~a~~~L~~l 87 (529)
T d1jdha_ 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNL 87 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHhhhHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999996 3444555555 468999999997654 356899999999999
Q ss_pred hcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHH
Q 000124 202 CGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD 281 (2138)
Q Consensus 202 cs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~ 281 (2138)
|.+++.+ ..+.+.||++.|+.+|.+++++++..++++|++++..++..+..+.+.|+++.|+.++++ .+..++..++.
T Consensus 88 ~~~~~~~-~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~a~~ 165 (529)
T d1jdha_ 88 SHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTD 165 (529)
T ss_dssp TTSHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHH
T ss_pred hCCchhH-HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHHHHHHH
Confidence 9766555 778999999999999999999999999999999998888888888899999999999984 56789999999
Q ss_pred HHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhH
Q 000124 282 ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPV 361 (2138)
Q Consensus 282 aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~ 361 (2138)
++.+++..+.+.+..+.+.|+++.|+.++..+
T Consensus 166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~------------------------------------------------ 197 (529)
T d1jdha_ 166 CLQILAYGNQESKLIILASGGPQALVNIMRTY------------------------------------------------ 197 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHhhhhhHHHHHHHhcccchHHHHHHHhh------------------------------------------------
Confidence 99999886666665565555555555433211
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHH
Q 000124 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI 441 (2138)
Q Consensus 362 A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL 441 (2138)
T Consensus 198 -------------------------------------------------------------------------------- 197 (529)
T d1jdha_ 198 -------------------------------------------------------------------------------- 197 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHH
Q 000124 442 TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPL 521 (2138)
Q Consensus 442 ~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~L 521 (2138)
.....+..++.++.+++.+ ++++..+.+.|+++.|+.++.+++..++..++++|.+++.... ......|+++.|
T Consensus 198 --~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~---~~~~~~~~i~~L 271 (529)
T d1jdha_ 198 --TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTL 271 (529)
T ss_dssp --CCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT---TCSCCHHHHHHH
T ss_pred --hhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc---chhhhhhcchhh
Confidence 1123344555566666654 5667778888999999999999999999999999999986322 122335789999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc--cCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000124 522 VQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK--SGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2138)
Q Consensus 522 V~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk--S~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~ 599 (2138)
++++++++..++..++++|++|+.+++..+..+.+.++++.|+.++. ++.+++++.++++|.+++....
T Consensus 272 v~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~--------- 342 (529)
T d1jdha_ 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ--------- 342 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST---------
T ss_pred hhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh---------
Confidence 99999999999999999999999988889999999999999998774 4567889999999999874311
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
. .+..+..+...|+++.|+.+++.+ +..++..+++++.+++. +++.+..+.+.
T Consensus 343 -------~------------------~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~ 396 (529)
T d1jdha_ 343 -------E------------------AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ 396 (529)
T ss_dssp -------T------------------HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT
T ss_pred -------c------------------chhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch-hhhhhhhhhhc
Confidence 0 011122234567899999999876 46788889999999998 68889999999
Q ss_pred CCHHHHHHHhccCCH----------------------HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC
Q 000124 679 EIVNPCMRLLTSNTQ----------------------MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~----------------------~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~ 736 (2138)
|+++.|+.++.+++. .+...+..++.+++. .. ..|..+.+.|++++|+++|.++
T Consensus 397 g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~--~~r~~~~~~~~i~~Lv~lL~~~ 472 (529)
T d1jdha_ 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSP 472 (529)
T ss_dssp THHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCS
T ss_pred ccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CH--HHHHHHHHCCCHHHHHHHhCCC
Confidence 999999999975443 455666778888875 22 5677788999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
+++++..|+.+|++|+.+++.+..+...|++++|++++.++++.+|+.|+.+|.+|.
T Consensus 473 ~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 473 IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999874
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=3.8e-24 Score=261.06 Aligned_cols=405 Identities=19% Similarity=0.201 Sum_probs=330.5
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh--HHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCC
Q 000124 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL--RLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD 159 (2138)
Q Consensus 83 aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~--r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nk 159 (2138)
.+.|+.+++.|++++++.+..|+..|+++...+.+ ...+...|++|.|+++|++ ++++++..|+++|.+++.+
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~---- 87 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG---- 87 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS----
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC----
Confidence 46799999999999999999999999887544333 5678889999999999976 5789999999999999963
Q ss_pred ChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCH-----HHHH
Q 000124 160 DHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA-----AAQS 234 (2138)
Q Consensus 160 d~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~-----evq~ 234 (2138)
+...+..+++.|++|.|++++.+++ ..+++.++++|.|++.+++.....+.+.|+++.++.++...+. ....
T Consensus 88 ~~~~~~~i~~~~~i~~l~~~L~~~~---~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~ 164 (434)
T d1q1sc_ 88 TSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 164 (434)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHH
T ss_pred ChhhhhHhhhccchhhhhhccccCC---HHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHH
Confidence 4556889999999999999998754 5689999999999999887777889999999999999987543 3445
Q ss_pred HHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCc
Q 000124 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 235 ~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
.++.++.+++.............+.++.+..++.+ .+..++..+.+++.+++..+...+..+.+.|+++.|++++.+++
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~ 243 (434)
T d1q1sc_ 165 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243 (434)
T ss_dssp HHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhc-cccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch
Confidence 66777888875555444555677889999999874 56789999999999998876666666777777777777655443
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
.+
T Consensus 244 ~~------------------------------------------------------------------------------ 245 (434)
T d1q1sc_ 244 LP------------------------------------------------------------------------------ 245 (434)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 22
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
++..++.++.+++.+ +.....+.+.++++.++.++.+.+++++..++.+|.+++..+.+....+.+.
T Consensus 246 ------------~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 313 (434)
T d1q1sc_ 246 ------------IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313 (434)
T ss_dssp ------------HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ------------hhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh
Confidence 444445555555432 3344556667888889999999999999999999999999877888888899
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhc------C
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC------H 546 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~------~ 546 (2138)
|+++.+++++.+++..++..++++|+|++.+. .+....+.+.|++++|++++++.+++++..+.++|.++.. +
T Consensus 314 ~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~ 393 (434)
T d1q1sc_ 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393 (434)
T ss_dssp TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999754 3556678899999999999999999999999999999853 2
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHH
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nL 585 (2138)
.+..+..+.+.|+++.+-.+..+++++++..|...|-+.
T Consensus 394 ~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334677888899999888888889999999998887654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=7.9e-25 Score=267.19 Aligned_cols=393 Identities=15% Similarity=0.153 Sum_probs=333.6
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchh--HHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFL--SQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~--~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+.++..+++++.+ .+..|+.++.++...... ...+.+.|+++.|+.++.+ .+.++|..++.+|.+++..++..+..
T Consensus 16 ~~lv~~l~s~~~~-~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 16 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 5567788888775 889999999988543332 3567788999999999975 45789999999999999887788888
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCC-----HHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS-----QKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d-----~~vre~Aa~aL~nLs 544 (2138)
+.+.|+++.++.++.+++..+++.++++|+|++..++..+..+...|+++.|+.++...+ ......+++.+.+++
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 174 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999877788888999999999999997652 345677788899998
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
.............+.++.|+.++++++++++..++++|.+++.+. +.+.++.++++++.+++.++..+..++
T Consensus 175 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l 254 (434)
T d1q1sc_ 175 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254 (434)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence 765554444455678899999999999999999999999998653 356889999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000124 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2138)
Q Consensus 617 ~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk 696 (2138)
++++.. .+.....+.+.|+++.|+.++++.++++++.++++|.+++..+++....+.+.|+++.++.++.+++..++
T Consensus 255 ~~l~~~---~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~ 331 (434)
T d1q1sc_ 255 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 331 (434)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred hhHHhh---hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence 887642 22334445678999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------CchHHHHHHhcCcHHH
Q 000124 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 697 ~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-------~~e~r~~Ii~~g~L~~ 769 (2138)
..|+++|.|++..... .....+.+.|++++|++++.+.+++++..++.+|.++.. ++..+..+.+.|+++.
T Consensus 332 ~~a~~~l~nl~~~~~~--~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 409 (434)
T d1q1sc_ 332 KEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 409 (434)
T ss_dssp HHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHH
Confidence 9999999999873322 456678899999999999999999999999999999853 2234667788999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 000124 770 LTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
|..+..++++++++.|...|-+
T Consensus 410 i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 410 IEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 9899999999999999998865
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.5e-24 Score=270.20 Aligned_cols=419 Identities=17% Similarity=0.194 Sum_probs=343.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
..++.++..+.+.+.+.+..++..++.+... .......+.+.|++|.|+++++. .++.++..|+++|+|++..++...
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4567788888899999999999999886543 23334577889999999999975 467799999999999998777778
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
..+...|+++.++.+|.+++.++++.++++|+|++.++...+..+.+.|+++.|+.++.+.++.+++.++++|.|++...
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 88889999999999999999999999999999999988899999999999999999999999999999999999998542
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~ 669 (2138)
.. ... . ....++++.|+.++++.+++++..++++|.+++..++
T Consensus 236 ~~-------------~~~--------------------~----~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~ 278 (503)
T d1wa5b_ 236 KP-------------QPD--------------------W----SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 278 (503)
T ss_dssp SS-------------CCC--------------------H----HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred cc-------------chH--------------------H----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence 10 000 0 0124578999999999999999999999999998788
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa 749 (2138)
+....+.+.|+++.++.++.++++.++..|+.++++++... +.....+.+.|+++.|..+++++++.++.+++++|+
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~---~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~ 355 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 355 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH---HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999998632 245667788999999999999999999999999999
Q ss_pred HhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchh
Q 000124 750 NLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2138)
Q Consensus 750 NLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~ 828 (2138)
|++. ++.....+.+.|+++.++.++.+++.+++..|+|+|.|++............+.+.+++..|+++|...+ ...
T Consensus 356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d--~~~ 433 (503)
T d1wa5b_ 356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD--NRI 433 (503)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC--HHH
T ss_pred HHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC--HHH
Confidence 9977 5667778889999999999999999999999999999999864333344444556789999999997543 455
Q ss_pred HHHHHHHHHHHhhcccC----CcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 829 VADALEVVALLARTKQG----LNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 829 ~~~AL~ALa~La~~~~~----~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
...++.++.++-..... ............+..+.++.|..+..++++.+++.|..+|.+++.+.
T Consensus 434 ~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~ 501 (503)
T d1wa5b_ 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 501 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 77788888876531100 00000111112223457888988999999999999999999988754
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.5e-23 Score=261.13 Aligned_cols=398 Identities=15% Similarity=0.154 Sum_probs=336.7
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCc--hhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
+-++..+.+.+.+ .+..++..+.++.... ..-..+.+.|+++.|+.++.. .+..+|..++.+|.+++..++.....
T Consensus 79 ~~~~~~~~s~~~~-~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~ 157 (503)
T d1wa5b_ 79 PQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 157 (503)
T ss_dssp HHHHHHHSCSSHH-HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666666654 6778888888775432 334567888999999999975 46789999999999999887777788
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
+.+.|+++.++.++.+++..++..++++|+||+..+++.|..+...|++++|+.++.+.+..++..++++|.+++.+.+.
T Consensus 158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~ 237 (503)
T d1wa5b_ 158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 237 (503)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence 88899999999999999999999999999999987788999999999999999999999999999999999999986555
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~ 621 (2138)
........++++.|+.++.+.+++++..++++|.+++... +.++++.++.++..++..++..+..++++++.
T Consensus 238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence 4444555789999999999999999999999999998542 35678999999999999999999999998864
Q ss_pred hhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000124 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2138)
Q Consensus 622 ~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ 701 (2138)
. .+.....+...|+++.|..+++++++.++..++++|.|++.++++....+.+.|+++.++.++.+++..++..|++
T Consensus 318 ~---~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~ 394 (503)
T d1wa5b_ 318 G---NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 394 (503)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred H---HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHH
Confidence 3 2233444667899999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------------CchHHHHHHhcCcHHH
Q 000124 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------------DPDIAAEVLLEDVVSA 769 (2138)
Q Consensus 702 ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~------------~~e~r~~Ii~~g~L~~ 769 (2138)
+|.|++.+..........+.+.|++++|+++|...+.++...++.+|.++.. .......+.+.|++..
T Consensus 395 ~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~ 474 (503)
T d1wa5b_ 395 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 474 (503)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHH
Confidence 9999986322211344567889999999999999999999999999999852 1233456778899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
|..+..+.++++++.|...|-+.-.
T Consensus 475 i~~Lq~~~~~~i~~~A~~il~~~f~ 499 (503)
T d1wa5b_ 475 IFNCQQNENDKIYEKAYKIIETYFG 499 (503)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 9888888999999999998866543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.8e-22 Score=236.43 Aligned_cols=416 Identities=17% Similarity=0.117 Sum_probs=284.3
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
+.||.|+++|++++++++..|+.+|+++|. +++++..+...|+||.|+++|+++++++|..|+.+|.+|+.+ +..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~----~~~ 77 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR----STT 77 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS----CHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHH
Confidence 479999999999999999999999999985 678999999999999999999999999999999999999962 567
Q ss_pred hHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhh----------------c
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL----------------S 226 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL----------------~ 226 (2138)
++..+.+.|+++.|+.++.... ++.++..+.++|.+++........ .... |++.++..+ .
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEE-LIAD-ALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHH-HHHH-HHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHCCChHHHHHHHhccC--cHHHHHHHHHHHHHHHhhhhhHHH-HHhc-ccHHHHHHHHhhhhhhhcchhhhhcc
Confidence 7899999999999999997654 456899999999999997765533 3333 444444333 2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-----CHhHHHHHHHHHHHHhhcCHHHHHHHHhcC
Q 000124 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----DISVRASAADALEALSSKSIKAKKAVVAAD 301 (2138)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s-----d~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~g 301 (2138)
..++.++..++.+|.+++..+..........|+++.++.++.+.. ...........+.+.... .+ .....
T Consensus 154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~ 228 (457)
T d1xm9a1 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR---LD--AEVPT 228 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT---HH--HHSCC
T ss_pred cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh---hH--HHHHH
Confidence 246788999999999988544333344456678888888875210 001111111111111100 00 00000
Q ss_pred CHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCC
Q 000124 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGV 381 (2138)
Q Consensus 302 gL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~ 381 (2138)
++..+...... ..
T Consensus 229 ~~~~~~~~~~~------------------------------------------~~------------------------- 241 (457)
T d1xm9a1 229 RYRQLEYNARN------------------------------------------AY------------------------- 241 (457)
T ss_dssp HHHHHHHTC-----------------------------------------------------------------------
T ss_pred HHHHHHhhhhh------------------------------------------hh-------------------------
Confidence 00000000000 00
Q ss_pred CCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhh
Q 000124 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLC 460 (2138)
Q Consensus 382 ~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls 460 (2138)
........+...........+...+.....+......+...++++.++.++.. .++..+..+..++..++
T Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~ 312 (457)
T d1xm9a1 242 ---------TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp ---------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ---------hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 00000000000000000011111111222334444555666778888887765 46778888889999888
Q ss_pred hccch-----hhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC------C
Q 000124 461 RREVG-----IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG------S 529 (2138)
Q Consensus 461 ~~s~~-----~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~------d 529 (2138)
..... .+..+.+.++++.|+++++++++.++..++.+|++|+. +++++..+. .++++.++.+|... +
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~-~~~~~~~i~-~~~i~~li~~L~~~~~~~~~~ 390 (457)
T d1xm9a1 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTH
T ss_pred hccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhh-ChhHHHHHH-HhhHHHHHHHHhccccCcCCc
Confidence 65332 34456678899999999999999999999999999998 466766654 46899999998642 4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhc
Q 000124 530 QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 530 ~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e 590 (2138)
++++..++.+|.+|+.++.+.++.+.+.|+++.|+.++++. ++.+++.|+.+|.+|+.+.+
T Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 67999999999999988888999999999999999999875 67899999999999986643
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.3e-21 Score=227.39 Aligned_cols=397 Identities=14% Similarity=0.145 Sum_probs=285.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
.++.|+.++.++++++|..++.+|.++|.++++++..+.+.||||.|+++++++++.+|..|+++|+||+..+++++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47899999999999999999999999999889999999999999999999999999999999999999998788899999
Q ss_pred HhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc----------------cccCChhHH
Q 000124 513 TAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL----------------LKSGGPKGQ 575 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L----------------LkS~~~evq 575 (2138)
.+.|+++.|+.++.+. +++++..++++|.+++.+....... ... +++.++.. .+..++.++
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HHH-HHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHH-Hhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 9999999999998754 8899999999999998854433332 222 23333322 234567899
Q ss_pred HHHHHHHHHHHHhh--------chhhHHHHHHHhcCCC------cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhH
Q 000124 576 DASAMALTKLIRAA--------DSATINQLLALLLGDS------PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2138)
Q Consensus 576 ~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d------~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~a 641 (2138)
..++++|.+++.+. ..+.++.++.++.... ..........+..... . .... .......
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~---~---~~~~--~~~~~~~ 232 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY---R---LDAE--VPTRYRQ 232 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT---T---HHHH--SCCHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhh---h---hHHH--HHHHHHH
Confidence 99999999887653 2467888888886321 1122222222221110 0 0000 0011111
Q ss_pred HH-------------HhhcCCCHHH-HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 000124 642 LV-------------QVLNSSNEEN-QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGAL 706 (2138)
Q Consensus 642 LV-------------~LLks~s~ev-re~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanL 706 (2138)
+. ..+....... ...+...+.. ..........+...++++.++.++.. .++.++..+..++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l 311 (457)
T d1xm9a1 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE-EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp HHHTC----------------------------CCC-CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHH-hhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 1111111111 1111222222 22356666677777889999988865 5778899999999999
Q ss_pred cCCCCc--ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC------C
Q 000124 707 SRPTKT--KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG------T 778 (2138)
Q Consensus 707 a~s~~~--~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~------~ 778 (2138)
+..... ....+..+.+.|+++.|++++++++++++..++.+|+||+.+++.+..+.+ ++++.++.++... +
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~ 390 (457)
T d1xm9a1 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTH
T ss_pred hhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCc
Confidence 864332 112345566789999999999999999999999999999999998877754 7899999988643 3
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccC
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQG 845 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~ 845 (2138)
++++..|+.+|.+|+.+. ...+..+.+.|++++|+.++.+.+ +...+..|..+|.+|..+++.
T Consensus 391 ~~v~~~a~~~L~~l~~~~---~~~~~~l~~~g~i~~L~~l~~~~~-~~~~~~aA~~~L~~L~~~~~~ 453 (457)
T d1xm9a1 391 EDILSSACYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSSA-SPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCHhh
Confidence 679999999999999765 456667777899999999997543 345688899999999866543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.6e-16 Score=196.80 Aligned_cols=566 Identities=15% Similarity=0.095 Sum_probs=385.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK- 205 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~- 205 (2138)
|..|+.-|.++|..+|..|++.|..++.. .|.+.. ....+|.|.+++... + .+...+...|.++...-
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~------lg~~~~-~~~lip~l~~~~~~~---~-ev~~~~~~~l~~~~~~~~ 80 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALA------LGVERT-RSELLPFLTDTIYDE---D-EVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHH------SCHHHH-HHTHHHHHHHTCCCC---H-HHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH------hCcHhh-HHHHHHHHHHHhcCc---H-HHHHHHHHHHHHHHHHcC
Confidence 45577888889999999999999998852 111221 245799999988653 2 35556667777664421
Q ss_pred -CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHH
Q 000124 206 -DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2138)
Q Consensus 206 -e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~ 284 (2138)
... -..-++.+..++..++..+|..++.+|..++.... ........++.+..+.. +.....|..+...+.
T Consensus 81 ~~~~-----~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~---~~~~~~~l~p~i~~L~~-~~~~~~r~~a~~ll~ 151 (588)
T d1b3ua_ 81 GPEY-----VHCLLPPLESLATVEETVVRDKAVESLRAISHEHS---PSDLEAHFVPLVKRLAG-GDWFTSRTSACGLFS 151 (588)
T ss_dssp SGGG-----GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---HHHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHH
T ss_pred ChhH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 111 01135677777888889999999999999984221 12222334454444444 445566777777666
Q ss_pred HHhhc-CHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHH
Q 000124 285 ALSSK-SIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVAD 363 (2138)
Q Consensus 285 nLs~~-s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~ 363 (2138)
.+... ++..+..+ ++.+..++.++++. ++..+..++..+......
T Consensus 152 ~~~~~~~~~~~~~l-----~~~~~~l~~D~~~~---------VR~~a~~~l~~~~~~~~~-------------------- 197 (588)
T d1b3ua_ 152 VCYPRVSSAVKAEL-----RQYFRNLCSDDTPM---------VRRAAASKLGEFAKVLEL-------------------- 197 (588)
T ss_dssp HHTTTSCHHHHHHH-----HHHHHHHHTCSCHH---------HHHHHHHHHHHHHHTSCH--------------------
T ss_pred HHHHHhhHHHHHHH-----HHHHHHHhccCCHH---------HHHHHHHHHHHHHHHhcH--------------------
Confidence 66543 23333333 45666777766644 555666665554421110
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHcc
Q 000124 364 IIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM 443 (2138)
Q Consensus 364 ~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s 443 (2138)
......+.+.+..++++.+.. +|..++.++..+...... .-.....++.+..++..
T Consensus 198 ---------------------~~~~~~l~~~l~~l~~d~~~~-vr~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~~~~D 253 (588)
T d1b3ua_ 198 ---------------------DNVKSEIIPMFSNLASDEQDS-VRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAED 253 (588)
T ss_dssp ---------------------HHHHHTHHHHHHHHHTCSCHH-HHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTC
T ss_pred ---------------------HHHHHHHHHHHHHHhcCCchh-hHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHhccc
Confidence 011224556777777776654 888899999887532111 11122356777888888
Q ss_pred CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCc-hhHHHHHhcCCchHHH
Q 000124 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLV 522 (2138)
Q Consensus 444 ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~-e~r~~I~~aGaIp~LV 522 (2138)
.+..++..++.+|..++..-.. .+.....++.+..++++.+..+|..++..+..++..-. ..+....-...++.+.
T Consensus 254 ~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~ 330 (588)
T d1b3ua_ 254 KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK 330 (588)
T ss_dssp SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 8999999999999988754211 12234568889999999999999999999999886432 2333333456778888
Q ss_pred HHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----chhhHHHH
Q 000124 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-----DSATINQL 597 (2138)
Q Consensus 523 ~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~L 597 (2138)
..+.+.++.+|..++..+..++..-.. .. .....++.+..++++.+++++..+...+..+...- ....++.+
T Consensus 331 ~~~~d~~~~vr~~~~~~l~~~~~~~~~-~~--~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l 407 (588)
T d1b3ua_ 331 ELVSDANQHVKSALASVIMGLSPILGK-DN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 407 (588)
T ss_dssp HHHTCSCHHHHHHHHTTGGGGHHHHCH-HH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhcCCChHHHHHHHHHHhhhhhccch-hH--HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 888888999999988888777531100 11 11345788888899999999999999888776542 13466788
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 598 LALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 598 i~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
..++++.++.++..+.++++.++....... ......+.+..++.++...+|..|+.+|..|+..... .-..
T Consensus 408 ~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---~~~~ 478 (588)
T d1b3ua_ 408 VELAEDAKWRVRLAIIEYMPLLAGQLGVEF------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAH 478 (588)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCGGG------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHcChHh------HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---HHHH
Confidence 888899999999999999988865432221 1223466677788889999999999999999753111 1123
Q ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchH
Q 000124 678 DEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDI 757 (2138)
Q Consensus 678 ~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~ 757 (2138)
..+++.+..++.+.+...|..++.++..+... .........+++.|+++++++.+.||..++.+|..+...-+.
T Consensus 479 ~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~------~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~ 552 (588)
T d1b3ua_ 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH------cChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 35778888999999999999999999988751 122234456899999999999999999999999999753221
Q ss_pred HHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 758 AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 758 r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
........|.+.+++.+.+.+||..|.+++..|.
T Consensus 553 --~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 553 --STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred --HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 1223345677778888999999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.6e-16 Score=195.56 Aligned_cols=566 Identities=16% Similarity=0.105 Sum_probs=384.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccC---chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKD---EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~---e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
+..|++-|++.++.+|..+++.|..++.. +..+ ...+|.|.+.+.++ .+++..+++.|.++...-..+++
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~lip~l~~~~~~~-~ev~~~~~~~l~~~~~~~~~~~~- 84 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTR-----SELLPFLTDTIYDE-DEVLLALAEQLGTFTTLVGGPEY- 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHH-----HTHHHHHHHTCCCC-HHHHHHHHHHHTTCSGGGTSGGG-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCChhH-
Confidence 45577888999999999999999887542 2222 24478888888664 46788888888777642100011
Q ss_pred hHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~n 242 (2138)
....++.+..++..+ ++.++..|..+|..++...+.. -.+..-++.+..+..++....|..++..+..
T Consensus 85 ------~~~ll~~l~~l~~~~---~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~ 152 (588)
T d1b3ua_ 85 ------VHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSV 152 (588)
T ss_dssp ------GGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHH
T ss_pred ------HHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 123667777776543 4679999999999998865432 1222235555566666667778888887777
Q ss_pred HHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhh
Q 000124 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQR 322 (2138)
Q Consensus 243 Ls~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~ 322 (2138)
+..... .-......+.+..++. +.+..+|..++.++..++..-.. .......++.+..++.++...
T Consensus 153 ~~~~~~----~~~~~~l~~~~~~l~~-D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~------ 218 (588)
T d1b3ua_ 153 CYPRVS----SAVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDS------ 218 (588)
T ss_dssp HTTTSC----HHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHH------
T ss_pred HHHHhh----HHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchh------
Confidence 662111 1122335666666666 67889999999999988764211 111233456666666665533
Q ss_pred hhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC
Q 000124 323 GQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH 402 (2138)
Q Consensus 323 ~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~ 402 (2138)
++..+..++..+....+. ......+.+.+..++.+.
T Consensus 219 ---vr~~a~~~l~~i~~~~~~-----------------------------------------~~~~~~i~~~l~~~~~D~ 254 (588)
T d1b3ua_ 219 ---VRLLAVEACVNIAQLLPQ-----------------------------------------EDLEALVMPTLRQAAEDK 254 (588)
T ss_dssp ---HHTTHHHHHHHHHHHSCH-----------------------------------------HHHHHHTHHHHHHHHTCS
T ss_pred ---hHHHHHHHHHHhhccCCH-----------------------------------------HHHHHHHHHHHHHhcccc
Confidence 455566665554310000 001123446677777666
Q ss_pred ChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccc-hhhHHhhhchhHHHHHH
Q 000124 403 DNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLIS 481 (2138)
Q Consensus 403 ~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~-~~~~~I~e~ggIp~LV~ 481 (2138)
+. .+|..++.+++.+..... ........++.+..++.+.+.+++..++..+..++..-. .......-...++.+..
T Consensus 255 ~~-~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~ 331 (588)
T d1b3ua_ 255 SW-RVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SH-HHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred cH-HHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 54 489999999988853211 122334567888999999999999999999988876422 12222223456788888
Q ss_pred HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcc
Q 000124 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561 (2138)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~ 561 (2138)
.+++.+..+|..++.++..++..... . ......+|.+..++++.+++++..+...+..+...-.. ... ....++
T Consensus 332 ~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-~~~--~~~ll~ 405 (588)
T d1b3ua_ 332 LVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQL--SQSLLP 405 (588)
T ss_dssp HHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HHH--HHHHHH
T ss_pred hhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-hhh--hhHHHH
Confidence 88999999999998888777642111 1 11234678889999999999999988877776542111 111 123467
Q ss_pred hhhhccccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 562 AFLWLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 562 aLv~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
.+..++++.++.++..++..+..++..- .....+.+..++.+....++..+.++++.+.......... .
T Consensus 406 ~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~------~ 479 (588)
T d1b3ua_ 406 AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH------A 479 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH------H
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHH------H
Confidence 7888889999999999999999887542 1345677888999999999999999999987543332221 2
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
..++.+..++++++...|..++.++..+...-+ ........++.+.++++|..+.||..++.+|..+....+.
T Consensus 480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---- 552 (588)
T d1b3ua_ 480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---- 552 (588)
T ss_dssp HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc----
Confidence 257888889999999999999999888865222 2234456899999999999999999999999999863221
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
......+.+.|..++++++.+||..|..||..|+
T Consensus 553 --~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 553 --STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred --HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 2223345666778888999999999999998775
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-17 Score=167.36 Aligned_cols=116 Identities=21% Similarity=0.333 Sum_probs=99.6
Q ss_pred ceEEEEEecccccc-----cccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLK-----QTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
+-|+|+|++|+||. +..|.+||||++.++.. ++++|+++++++||+|||+|.|.++++ .++.|+|+||+++.
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDANY 81 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECCS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECCC
Confidence 45899999999993 34589999999999432 334699999999999999999999854 78999999999999
Q ss_pred CCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2083 FGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2083 ~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
++.+.||+|.|.|.++...+....+|+|.+. +.+.++++++|.+
T Consensus 82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQV-----TEMVLEMSLEVAS 125 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTCEEEEEEEETTT-----EEEEEEEEEECCC
T ss_pred CCCCeEEEEEEEHHHccCCCeEEEEEEccCC-----CeEEEEEEEEEEe
Confidence 9999999999999999999999999999877 3355558887754
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=3.6e-17 Score=171.54 Aligned_cols=119 Identities=18% Similarity=0.352 Sum_probs=98.3
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
|.|.|+|++|+||+ +..|+.||||++.+ ++.+++|++++ +++||.|||+|+|.+.++ .+.|+|+|||+++++++
T Consensus 10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~-~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~~~~d 86 (136)
T d1wfja_ 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTC-RTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDVGTED 86 (136)
T ss_dssp EEEEEEEEEEEECSSCCSSCSSCCCEEEES-SSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSSCTTT
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCccEEEEE-eeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecCCCCC
Confidence 89999999999994 45799999999999 66777888886 699999999999999864 56799999999999875
Q ss_pred -ccceEEEEecceeeccee-cceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2087 -TLGKVTIQIDKVVTEGVY-SGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2087 -~~g~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
.+|++.|.|.++..+|.+ ...|.|..... ..+.+.|.+.|.|...
T Consensus 87 ~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~---~~G~i~l~l~~~p~~p 133 (136)
T d1wfja_ 87 DAVGEATIPLEPVFVEGSIPPTAYNVVKDEE---YKGEIWVALSFKPSGP 133 (136)
T ss_dssp CCSEEEEEESHHHHHHSEEEEEEEEEEETTE---EEEEEEEEEEEEECCS
T ss_pred CEEEEEEEEhHHhcccCCcCcEEEEecCCCc---cCEEEEEEEEEEeCCC
Confidence 799999999999998887 45777754311 1246668999977543
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.3e-17 Score=166.66 Aligned_cols=115 Identities=22% Similarity=0.383 Sum_probs=94.7
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
|+|.|+|++|.|| ++..|.+||||++.+ .+.+++|++++++.||.|||+|.|.+.+| ++.|.|+||++++|++ +
T Consensus 6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~-~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~~~d~ 82 (126)
T d2ep6a1 6 GILQVKVLKAADLLAADFSGKSDPFCLLEL-GNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKPPD 82 (126)
T ss_dssp EEEEEEEEEEESCCCSSSSSCCCEEEEEEE-TTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEc-CCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccCCcCcc
Confidence 8999999999999 556799999999999 55667899999999999999999998765 5899999999999987 6
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
.+|+|.|+|.++-. |. ..+|.|.+...+....+.+.++++.
T Consensus 83 ~lG~~~i~l~~l~~-~~-~~~~~l~~~~~~~~~~G~i~l~~~~ 123 (126)
T d2ep6a1 83 FLGKVAIPLLSIRD-GQ-PNCYVLKNKDLEQAFKGVIYLEMDL 123 (126)
T ss_dssp ECCBCEEEGGGCCS-SC-CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred eEEEEEEEHHHCCC-CC-ceEEEccccCCCCceeEEEEEEEEE
Confidence 79999999999744 32 4678887764444445655555543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-14 Score=167.89 Aligned_cols=207 Identities=17% Similarity=0.178 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHH-HHhcCCHHHHHHHHHH
Q 000124 39 STVAKFLEQLHAN----------MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNVAAT 107 (2138)
Q Consensus 39 ~~V~qlLe~L~~~----------s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~-LLks~~~evr~~Aa~~ 107 (2138)
+++..++..++.. +.+.+.++.|+..|.+++...++++.++ . .||++.++. ++++++++++..|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~-~gg~~~ll~~ll~s~~~~vr~~A~~~ 82 (264)
T d1xqra1 5 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC-Q-LSGMHLLVGRYLEAGAAGLRWRAAQL 82 (264)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH-H-TTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHH-H-cCCHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4566666666554 4556789999999999998776666655 4 699999885 7888999999999999
Q ss_pred HHHhccC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCC
Q 000124 108 LSVLCKD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK 185 (2138)
Q Consensus 108 L~~Ls~~-e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ 185 (2138)
|++++.+ +..+..+...|+++.|+++|.+ .+++++..|+.+|.+++.+ .+.++..+.+.|+++.|++++.+++
T Consensus 83 L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~~gi~~L~~lL~~~~- 157 (264)
T d1xqra1 83 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQQV- 157 (264)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc----chhhHHHHHHhhhhhHHHHHHhcCc-
Confidence 9999975 6778888899999999999976 6899999999999999973 5667889999999999999998754
Q ss_pred CChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchh
Q 000124 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTV 254 (2138)
Q Consensus 186 ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l 254 (2138)
..++..++.+|.+++.+++.....+.+.|+++.|+.+|.+++++++..++.+|.+|+..++......
T Consensus 158 --~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 224 (264)
T d1xqra1 158 --QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 224 (264)
T ss_dssp --HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5689999999999999888888999999999999999999999999999999999996555444443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.7e-11 Score=165.51 Aligned_cols=653 Identities=14% Similarity=0.139 Sum_probs=352.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcC-CCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSSG-GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~-~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~ 205 (2138)
|..|++-+.+.|++.|-.|+.-|.+.-.. ....+.. ....+++.|+++|.+++ +.|+..|..+|..+...-
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~-----~~~~i~~~ll~~L~D~~---~~Vq~~A~k~l~~l~~~~ 76 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDD-----SERKVVKMILKLLEDKN---GEVQNLAVKCLGPLVSKV 76 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTT-----HHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChH-----HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhC
Confidence 34566667788999999999888775432 1111221 12236889999998755 569999999999998764
Q ss_pred CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCc-----chhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI-----PTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 206 e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r-----~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
... .+ ..-++.|+..+.+.+...+..+..+|..+...-+... ........++.+...+....+..++..+.
T Consensus 77 ~~~--~~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al 152 (1207)
T d1u6gc_ 77 KEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL 152 (1207)
T ss_dssp CHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred cHh--hH--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 432 11 1246777777777788888888888887764322111 11112234455555555556778888888
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
.++..+.......-.. .....++.++..+.++... ++..|..||..+....+..
T Consensus 153 ~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~---------vR~~A~~~l~~l~~~~~~~---------------- 206 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLA---------VRKRTIIALGHLVMSCGNI---------------- 206 (1207)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHH---------HHHHHHHHHHHHTTTC-------------------
T ss_pred HHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHCCHH----------------
Confidence 8888776531100000 0011234455555554422 6677777777665321110
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh--hchHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH--AEAKKVLI 438 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e--~~gI~~LV 438 (2138)
.+ . .+.+.++..+........+..++.+++.++..... .+.. ...++.++
T Consensus 207 ------------------------~~-~-~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~ 258 (1207)
T d1u6gc_ 207 ------------------------VF-V-DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVV 258 (1207)
T ss_dssp -------------------------C-T-THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHH
T ss_pred ------------------------HH-H-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHH
Confidence 00 0 11122222221111111344455566666432110 1111 34678888
Q ss_pred HHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHH-HHHHHHHHHhhcCchhHHHHHhcCC
Q 000124 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQE-YAVQLIAILTEQVDDSKWAITAAGG 517 (2138)
Q Consensus 439 ~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~-~Aa~aL~nLa~~s~e~r~~I~~aGa 517 (2138)
..+...+++++..+..++..+....+...... -...++.+.+.+.. ++.... ..............+. ....
T Consensus 259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~ii~~~l~~l~~-dp~~~~~~~~~~~~~~~~~~~~~-----~~~~ 331 (1207)
T d1u6gc_ 259 KFCNVDDDELREYCIQAFESFVRRCPKEVYPH-VSTIINICLKYLTY-DPNYNYDDEDEDENAMDADGGDD-----DDQG 331 (1207)
T ss_dssp HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH-HHHHHHHHTTCCCC-C-------------------------------
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhChhhhhhh-HHHHHHHHHHHHhc-CcchhhhhHHHHHhhhhhhccch-----hhhh
Confidence 89999999999999998888776533211110 12223334333332 222111 1111111111000000 0111
Q ss_pred chHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHH
Q 000124 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQL 597 (2138)
Q Consensus 518 Ip~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~L 597 (2138)
.+....-..+.+..+|..++.+|..+.....+.-... -...++.|+..+++.++.++..+..++..+............
T Consensus 332 ~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 410 (1207)
T d1u6gc_ 332 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 410 (1207)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhh
Confidence 2222223344577899999999999876433322211 256788888888888999999999988887654221100000
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 598 LALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 598 i~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
............. ..+. .-...++.+...+++.+..++..+...+..+....+...... -
T Consensus 411 ~~~~~~~~~~~~~-----------------~l~~--~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~-l 470 (1207)
T d1u6gc_ 411 DPDAMEQGETPLT-----------------MLQS--QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH-I 470 (1207)
T ss_dssp -------CCCHHH-----------------HHHH--HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG-H
T ss_pred chHHHHhhcchHH-----------------HHHH--HhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHh-h
Confidence 0000000000000 0000 012346777888888999999999999999876433222111 1
Q ss_pred CCCHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--
Q 000124 678 DEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-- 753 (2138)
Q Consensus 678 ~GaV~~Lv~LL~dg--s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-- 753 (2138)
...++.+...+.+. +..++..+..++..+...... . ...-.-...++.+...+.+....++.++..++..+..
T Consensus 471 ~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l 547 (1207)
T d1u6gc_ 471 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP--Q-VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 547 (1207)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG--G-GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccH--H-HHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHh
Confidence 12455666666653 456888888888888763222 1 1112234566777888888888999988888877642
Q ss_pred Cc-------hHHHHHHhcCcHHHHHHHHh--CCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCC
Q 000124 754 DP-------DIAAEVLLEDVVSALTRVLA--EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 754 ~~-------e~r~~Ii~~g~L~~LV~LL~--~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~ 824 (2138)
.+ +....+ ...++.+...+. +.+.+++..|..+++.+..... +...... ...++.++..+.
T Consensus 548 ~~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~--~~~~~~~--~~~l~~l~~~l~---- 617 (1207)
T d1u6gc_ 548 RPLDQPSSFDATPYI--KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG--DNLGSDL--PNTLQIFLERLK---- 617 (1207)
T ss_dssp CCSSSCCCCCCHHHH--HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG--GGCCTHH--HHHHHHHHHHTT----
T ss_pred hhhccchhhhhHHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh--hhhHHHH--HHHHHHHHHHhc----
Confidence 11 111111 123444455454 3468899999999998876531 2111111 224445555553
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCC
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~ 893 (2138)
+...+..++.++..++....... .. .+ ....++.+...+...++.++..++.+|..++...+
T Consensus 618 ~~~~r~~a~~~l~~i~~~~~~~~-~~-~~-----l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 679 (1207)
T d1u6gc_ 618 NEITRLTTVKALTLIAGSPLKID-LR-PV-----LGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 679 (1207)
T ss_dssp SSSHHHHHHHHHHHHTTCSSCCC-CH-HH-----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred chhhHHHHHHHHHHHHHhccchh-HH-HH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence 23457888888888875321111 00 01 12346777888888899999999999999887653
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=4.3e-16 Score=162.51 Aligned_cols=109 Identities=19% Similarity=0.391 Sum_probs=93.6
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecC---CC-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN---GP-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~---~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
|.|.|+|++|.|| ++..|..||||++++.. +. ++||+|++++.||.|||+|.|.+..++.+..|+|+||+++.+
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 94 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence 7899999999999 67778899999999933 22 346999999999999999999998887788999999999999
Q ss_pred CCc-ccceEEEEecceeecceecceeecCCCCCCCCCcc
Q 000124 2084 GKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSR 2121 (2138)
Q Consensus 2084 ~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 2121 (2138)
+++ .+|+|.|.|.++- .+.+.++|+|.+. ++|+..
T Consensus 95 ~~d~~iG~~~i~l~~l~-~~~~~~W~~L~~~--~~ge~~ 130 (132)
T d1a25a_ 95 SRNDFMGSLSFGISELQ-KAGVDGWFKLLSQ--EEGEYF 130 (132)
T ss_dssp SCCEEEEEEEEEHHHHT-TCCEEEEEECBCH--HHHTTC
T ss_pred CCCcEeEEEEEeHHHcC-CCCCCeEEECCCC--CCCccc
Confidence 875 7899999999974 5668899999887 566544
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.9e-11 Score=165.11 Aligned_cols=987 Identities=15% Similarity=0.130 Sum_probs=495.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHH
Q 000124 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAV 297 (2138)
Q Consensus 218 I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i 297 (2138)
|..|+.-+.+++++.|..|+.-|.+....+......-.....++.+++.|. +.+.++|..|..+|..+..+.++..-
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~~~~-- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQV-- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCcHhhH--
Confidence 556777788899999999998887765322211222234468899999997 67789999999999988776332211
Q ss_pred HhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhc
Q 000124 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377 (2138)
Q Consensus 298 ~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q 377 (2138)
...++.|+..+.+++.. .+..+..+|..+....+.. ....... ..
T Consensus 82 --~~l~~~L~~~l~~~~~~---------~r~~~~~~L~~i~~~l~~~-------~~~~~~~---~~-------------- 126 (1207)
T d1u6gc_ 82 --ETIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA-------SSGSALA---AN-------------- 126 (1207)
T ss_dssp --HHHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC------------CCTH---HH--------------
T ss_pred --HHHHHHHHHHhcCCchh---------hhHHHHHHHHHHHHhcccc-------cccchhH---HH--------------
Confidence 12245566655554422 3344445544442111000 0000000 00
Q ss_pred CCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCch--hHHHHhhhchHHHHHHHHccCCHHHHHHHHHH
Q 000124 378 KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF--LSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2138)
Q Consensus 378 ~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~--~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~a 455 (2138)
.-..+.+.+...+.......++..++..++.+..... +.. .....++.++..+.+.+..++..|+.+
T Consensus 127 ---------~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~--~~~~il~~l~~~l~~~~~~vR~~A~~~ 195 (1207)
T d1u6gc_ 127 ---------VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIA 195 (1207)
T ss_dssp ---------HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0011223344444444445588888888887743211 100 012356677778888999999999999
Q ss_pred HHHhhhccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHH
Q 000124 456 LTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2138)
Q Consensus 456 L~~Ls~~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre 534 (2138)
|..+....+... -...++.+++.+ .+.+...+..++.+++.++...+. +..-.-...++.+.+.+.+.++++|+
T Consensus 196 l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~~r~ 270 (1207)
T d1u6gc_ 196 LGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELRE 270 (1207)
T ss_dssp HHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 999876532211 123456666655 455666777888888888874332 21111245677888888888999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHcCCcchhhhccccCChhHHH-HHHHHHHHHHHh---hchhhHHHHHHHhcCCCcchH
Q 000124 535 VAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKSGGPKGQD-ASAMALTKLIRA---ADSATINQLLALLLGDSPSSK 609 (2138)
Q Consensus 535 ~Aa~aL~nLs~~sd-~~r~~I~e~GaI~aLv~LLkS~~~evq~-~Aa~AL~nLs~~---~e~~aI~~Li~LL~~~d~~V~ 609 (2138)
.+..++..+..... .....+ ...++.+...++. +|.... ............ ......+....-..+....++
T Consensus 271 ~al~~l~~l~~~~~~~~~~~~--~~ii~~~l~~l~~-dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR 347 (1207)
T d1u6gc_ 271 YCIQAFESFVRRCPKEVYPHV--STIINICLKYLTY-DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 347 (1207)
T ss_dssp HHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCC-C------------------------------------CTTHHH
T ss_pred HHHHHHHHHHHhChhhhhhhH--HHHHHHHHHHHhc-CcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHH
Confidence 99999988865321 111111 1122333333332 222111 111111111000 011112222223344556678
Q ss_pred HHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhh----------------
Q 000124 610 AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG---------------- 673 (2138)
Q Consensus 610 ~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~---------------- 673 (2138)
..+.++|..+....+. ..... -...++.|+..+++.++.+|..+..++..+.........
T Consensus 348 ~~a~~~L~~l~~~~~~--~l~~~--~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (1207)
T d1u6gc_ 348 RAAAKCLDAVVSTRHE--MLPEF--YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 423 (1207)
T ss_dssp HHHHHHHHHHHTTCCT--THHHH--HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHhHHHHHHH--HHHHH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHH
Confidence 8888888887654322 11111 123578888888888999999999988887642111100
Q ss_pred h--hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHH
Q 000124 674 S--LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALA 749 (2138)
Q Consensus 674 ~--Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALa 749 (2138)
. -.-..+++.+.+.+++.+..++..+...+..+....+. ..... -...++.+...+.+ .+..++..++..+.
T Consensus 424 ~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~--~l~~~--l~~~~~~i~~~l~~~~~~~~~~~~al~~l~ 499 (1207)
T d1u6gc_ 424 MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG--ALTQH--IPVLVPGIIFSLNDKSSSSNLKIDALSCLY 499 (1207)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--TTGGG--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcch--HHHHh--hHhhHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 0 01124567778888899999999999999988763332 11111 11245556666654 45678888888888
Q ss_pred HhhCC--chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC-Cchhhhhhhh--hhhhHHHHHHhhccCCC
Q 000124 750 NLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP-VGDVLKGNAQ--CRFVVLTLVDSLNAMDM 824 (2138)
Q Consensus 750 NLa~~--~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~-~~d~i~~~i~--~~gav~~LV~LL~s~~~ 824 (2138)
.+... ++.-. -......+.+...+.+..+.++..|..++..+..... .......... -......++..+...+.
T Consensus 500 ~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 578 (1207)
T d1u6gc_ 500 VILCNHSPQVFH-PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 578 (1207)
T ss_dssp HHHHSSCGGGGH-HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHhccHHHHH-HHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhccc
Confidence 88652 22111 1234567888888999999999999988888765321 1000000000 02234455556655566
Q ss_pred CchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhccc
Q 000124 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARS 904 (2138)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~ 904 (2138)
+...+..|+.+++.+...... ... ...+..++.+...+. ++..+..++..+..+....... ++ .
T Consensus 579 ~~e~~~~al~~l~~l~~~~~~--~~~------~~~~~~l~~l~~~l~--~~~~r~~a~~~l~~i~~~~~~~--~~----~ 642 (1207)
T d1u6gc_ 579 DQEVKERAISCMGQIICNLGD--NLG------SDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKI--DL----R 642 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHTGG--GCC------THHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCC--CC----H
T ss_pred chHHHHHHHHHHHHHHHHhhh--hhH------HHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHhccch--hH----H
Confidence 666788888888877642111 000 001112333333333 3335666777776665433210 00 0
Q ss_pred ccHHHHHHHH---hccCCceeehhhhHHHHHhcccchhhHHHHHhhcCCcHHHHHHHHHHhhhhccCCCCCcccccCCCc
Q 000124 905 SSIGALADRI---MHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGY 981 (2138)
Q Consensus 905 ~~i~~La~~i---l~s~~~ev~~~~~~~~i~a~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~ 981 (2138)
.+...+...+ +.+....+
T Consensus 643 ~~l~~~~~~l~~~l~~~~~~~----------------------------------------------------------- 663 (1207)
T d1u6gc_ 643 PVLGEGVPILASFLRKNQRAL----------------------------------------------------------- 663 (1207)
T ss_dssp HHHHHHHHHHHHHTTSCCHHH-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcccchHHH-----------------------------------------------------------
Confidence 0111111111 01110000
Q ss_pred cccccccccccCCcCCCCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCccccccchhhhHHHHH
Q 000124 982 MERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALF 1061 (2138)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~~~~~~~~~~l 1061 (2138)
...+++.|..+..+.+.... ...++.+...|...-. + ++..-.=.+..+
T Consensus 664 ----------------------r~~al~~L~~l~~~~~~~~~----~~~~~~~l~~l~~ll~---~--~d~~v~~~~l~~ 712 (1207)
T d1u6gc_ 664 ----------------------KLGTLSALDILIKNYSDSLT----AAMIDAVLDELPPLIS---E--SDMHVSQMAISF 712 (1207)
T ss_dssp ----------------------HHHHHHHHHHHHHHCCTTCC----HHHHHHHHTTCGGGSC---T--TCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhccccch----hHHHhhHHHhhccccc---c--ccHHHHHHHHHH
Confidence 11122222222222211100 0011111111110000 0 000000012334
Q ss_pred HHHHccCCccccchhhhchHHHHHHHhcchhhhhHHHHH--HHHHHhhhcCCcchhHHhhhcccchhhhhhh-cccccCC
Q 000124 1062 LAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAA--QAMASLVCSGSKGIILAIANSGAVAGLITLI-GHIESDT 1138 (2138)
Q Consensus 1062 l~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~aa--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 1138 (2138)
|+.+.+...-...+..-..+|.+..++++.-.......+ ..+..++..+..+... ..++..+ ..+.++.
T Consensus 713 l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~l~~~l~~~~~~~~ 784 (1207)
T d1u6gc_ 713 LTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY--------MDLLRMLTGPVYSQS 784 (1207)
T ss_dssp HHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSH--------HHHHHHHSTTTTTC-
T ss_pred HHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccch--------HHHHHHHHHhhcccc
Confidence 555554433233333445677777777664332221111 1111222222221110 0001100 0000000
Q ss_pred chhhhhhhhhhhccCCcHH--HHHhhhcccccccchhhhhhhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHH
Q 000124 1139 PNLVALSEEFFLVRYPDEV--VLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIM 1216 (2138)
Q Consensus 1139 ~~~~~~~~~~~~~~~~~~~--~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 1216 (2138)
.....++. .+...+..=....+....+-+..++.........+.....|+..|-.+...-+...
T Consensus 785 -----------~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~--- 850 (1207)
T d1u6gc_ 785 -----------TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG--- 850 (1207)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS---
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccc---
Confidence 00000000 00000000000011111111111111111111111122234433333321111000
Q ss_pred hhcchhHHHHHHhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchHhHHHHHHhhhccccccc
Q 000124 1217 AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIK 1296 (2138)
Q Consensus 1217 ~e~~~l~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 1296 (2138)
-....+.+.+.++ +|+++...+|++.++.+... .....+..+...+.. ....+|....+|.+++..-...
T Consensus 851 -~~~l~~~l~~~l~-~~~~~vr~aAa~aLg~l~~~-------~~~~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~~ 920 (1207)
T d1u6gc_ 851 -QLELKSVILEAFS-SPSEEVKSAASYALGSISVG-------NLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVV 920 (1207)
T ss_dssp -CTHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCST
T ss_pred -hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh-------hHHHHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcchh
Confidence 0123345556565 67888888888888765321 112223333444443 3467888888888876543332
Q ss_pred chH-hhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 000124 1297 DSD-LAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIM 1375 (2138)
Q Consensus 1297 ~~~-~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l 1375 (2138)
... ...+.+..|+..+....+..+.++..+|=||..-++. ..+..+.+.|.+ .+...+..+...++-+
T Consensus 921 ~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~----------~~lp~L~~~l~~-~~~~~r~~ai~~l~~~ 989 (1207)
T d1u6gc_ 921 GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----------TLLPRLKGYLIS-GSSYARSSVVTAVKFT 989 (1207)
T ss_dssp TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----------GTHHHHTTTSSS-SCHHHHHHHHHHTGGG
T ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Confidence 222 2234455666777888888999999999888544332 356777788877 5566789999999988
Q ss_pred hcCcccccCccccchhhhhhhhhcCChhHHHHHHHHHHHhhhhh
Q 000124 1376 FGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDD 1419 (2138)
Q Consensus 1376 ~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~ 1419 (2138)
+.+..-.-.|--..+|.|++..|..+...+..++..+|..++..
T Consensus 990 ~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_ 990 ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033 (1207)
T ss_dssp CCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 88765444455688999999999999999999999999998753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.6e-15 Score=157.65 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=85.8
Q ss_pred ceEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccc
Q 000124 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLG 2089 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g 2089 (2138)
++|.|+|++|.+|..+ ++.||||+|.++ +.+.+|++++ +.||.|||+|.|.+++| ++.|.|+|||++.++.+.+|
T Consensus 2 ~~L~V~v~~a~~l~~~-~~~dpYv~l~~~-~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~~~d~~lG 76 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ-EKFNTYVTLKVQ-NVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMVG 76 (128)
T ss_dssp EEEEEEEEEEECSSCG-GGCEEEEEEEET-TEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEEE
T ss_pred eEEEEEEEEEECCCCC-CCcCeEEEEEeC-CEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCCcCCcceE
Confidence 5799999999999997 999999999994 4555688885 66999999999999876 68899999999999999999
Q ss_pred eEEEEecceeecce--ecceeecCCC
Q 000124 2090 KVTIQIDKVVTEGV--YSGLFNLNHD 2113 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~--~~~~~~l~~~ 2113 (2138)
++.|.|.++...+. ..++|+|...
T Consensus 77 ~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 77 TVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred EEEEEehhhccCCCCCCCeeEECCcc
Confidence 99999999986433 5568999654
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.7e-15 Score=156.87 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=93.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK 2085 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k 2085 (2138)
.+|-|.|||++|+++ ++..+++||||++.+ .++.++|+|++++.||.|||.|+|.+.+ ++.|+|+|||+++||+
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~-~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTV-DGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEE-TTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSC
T ss_pred cceEEEEEEEEeECCCcCCCCCCcCeEEEEEE-CCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccCCCC
Confidence 468899999999999 566688999999999 6677889999999999999999998752 6899999999999987
Q ss_pred -cccceEEEEecceeec--cee-cceeecCCCCCCCCCccceEEEEEec
Q 000124 2086 -STLGKVTIQIDKVVTE--GVY-SGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2086 -~~~g~~~~~~~~v~~~--~~~-~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+.+|++.|+|.+++.+ |.. +..+.|.....++|.....+|.+.++
T Consensus 80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 7999999999999763 332 23444432223555555566666654
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.52 E-value=5e-15 Score=155.40 Aligned_cols=115 Identities=19% Similarity=0.329 Sum_probs=95.0
Q ss_pred CCceEEEEEeccccccc-------------ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEE
Q 000124 2008 LPGCLTVTIKRGNNLKQ-------------TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLH 2074 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~ 2074 (2138)
..|+|.|+|++|.||+. ..+..||||++.+++...++|++++++.||.|||+|.|.+.+ +++|.
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~---~~~l~ 80 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec---CCceE
Confidence 46999999999999963 247789999999966566689999999999999999998864 47999
Q ss_pred EEEeecCCCCC-cccceEEEEecceeecce--ecceeecCCCCCCCCCccceEEEEEec
Q 000124 2075 IICKSKNTFGK-STLGKVTIQIDKVVTEGV--YSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2075 ~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
|+||+++.|++ +.+|+|.|.|.++..++. ...+|+|.+. |+.+ +.|+|+|+
T Consensus 81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~----G~v~-l~v~~~~~ 134 (136)
T d1gmia_ 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE----GKVY-VIIDLSGS 134 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS----CEEE-EEEEEEEE
T ss_pred EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCC----cEEE-EEEEEEeC
Confidence 99999999987 569999999999988764 5678999765 5544 44555554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-13 Score=158.41 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=177.9
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcC
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS-LLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~-LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG 171 (2138)
..+.+.+.+..|+..|..++.+.+++..+...||+++++. +|+++++++|..|+.+|.+++.+ ++..+..+.+.|
T Consensus 26 ~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~----~~~~~~~~~~~~ 101 (264)
T d1xqra1 26 EQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN----VAAIQEQVLGLG 101 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT----CHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC
Confidence 3445678899999999999999999999999999999985 77778999999999999999973 456788899999
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCc
Q 000124 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI 251 (2138)
Q Consensus 172 ~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r 251 (2138)
++|.|++++.+.. ++.++..++++|.+++.+++..+..+.+.||++.|+.+|.++++.++..++.+|.+++..+++.+
T Consensus 102 ~i~~Lv~lL~~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 102 ALRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred chHHHHHHhhcCC--CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 9999999997543 35689999999999999998888899999999999999999999999999999999998888888
Q ss_pred chhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHh
Q 000124 252 PTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299 (2138)
Q Consensus 252 ~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e 299 (2138)
..+.+.|+++.|+.++.+ .+..++..+..+|.+|+..++..+..+..
T Consensus 180 ~~~~~~~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999999999984 56689999999999999987777766654
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.8e-14 Score=149.99 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=90.2
Q ss_pred CceEEEEEeccccc----ccccCCCCceEEEEecC----CCCccccccccC-CCCCccccceeeecCCCCCCeEEEEEee
Q 000124 2009 PGCLTVTIKRGNNL----KQTMGTTNAFCRLTIGN----GPPRQTKVVSHS-ISPEWKEGFTWAFDVPPKGQKLHIICKS 2079 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~-~~p~w~~~f~~~~~~~p~~~~l~~~~~~ 2079 (2138)
|.-|.|+|++|+|| .+..|..||||++.+.. ..+++|++|+++ +||.|||+|+|.+..| ..+.|+++|||
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D 81 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVED 81 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEE
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEE
Confidence 77899999999999 34557789999999821 123469999877 6999999999988755 77899999999
Q ss_pred cCCCCCc-ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2080 KNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2080 ~~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
++.+|++ .+|.+.|.|..+. .|. ..|+|.+..++.=...+|.+|+.|.+
T Consensus 82 ~d~~~~d~~iG~~~i~l~~l~-~g~--~~~~L~~~~g~~~~~~~L~v~i~~~d 131 (131)
T d1qasa2 82 YDSSSKNDFIGQSTIPWNSLK-QGY--RHVHLLSKNGDQHPSATLFVKISIQD 131 (131)
T ss_dssp CCTTTCCEEEEEEEEEGGGBC-CEE--EEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred ecCCCCCcEEEEEEEEEeccC-CCC--EEEECCCCCcCCCCCCEEEEEEEEEC
Confidence 9999876 6999999998874 442 36888766222222446788888764
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=3.4e-14 Score=149.37 Aligned_cols=106 Identities=22% Similarity=0.351 Sum_probs=90.1
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC-------------CccccccccCCCCCccccceeeec--CCCCC
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-------------PRQTKVVSHSISPEWKEGFTWAFD--VPPKG 2070 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~t~~~~~~~~p~w~~~f~~~~~--~~p~~ 2070 (2138)
-.|.|.|+|++|.|| .+..|..||||++.+-.+. ++||+|++++.||.|||+|.|..- +.+..
T Consensus 16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~ 95 (142)
T d1rh8a_ 16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK 95 (142)
T ss_dssp ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence 368999999999999 6677899999999983222 136999999999999999999631 12357
Q ss_pred CeEEEEEeecCCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2071 QKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2071 ~~l~~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
..|+|+||+++.||+ +.+|+|.|.|.++...+.+..+|.|.+.
T Consensus 96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 789999999999987 5799999999999999999999999887
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1.3e-13 Score=145.53 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=86.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCC--ccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~ 2083 (2138)
-+-|.|+|++|.|| .+..|..||||++++.++.. ++|++++++.||.|||+|.|.+..+. ...+|+|+||+++.+
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~ 112 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence 46799999999999 55568899999999844333 36999999999999999999775332 457899999999999
Q ss_pred CCc-ccceEEEEecceeecceecceeecCC
Q 000124 2084 GKS-TLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2084 ~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
|++ .+|+|.|.|.++-.......+|.|..
T Consensus 113 ~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 866 69999999999877777788888854
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.5e-13 Score=142.57 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=88.6
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCC---CccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCCC
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP---PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTFG 2084 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~~ 2084 (2138)
-+-|.|+|++|.||... |..||||++.+.++. .+||++++++.||.|||+|.|.+...- .+..|+|+||+++.|+
T Consensus 25 ~~~L~V~v~~a~~L~~~-g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~ 103 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNHD-GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103 (138)
T ss_dssp TTEEEEEEEEEECCCCS-SCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC
T ss_pred CCEEEEEEEEcCCCCCC-CCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccc
Confidence 46799999999999555 889999999994432 246999999999999999999885432 4678999999999998
Q ss_pred Cc-ccceEEEEecceeecceecceeecCCC
Q 000124 2085 KS-TLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2085 k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++ .+|+|.|.|.++-.......+|.|.+.
T Consensus 104 ~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 104 RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred cceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 65 579999999999877778899999987
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=9.7e-14 Score=144.18 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=82.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC--CccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP--PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~ 2083 (2138)
-|.|.|+|++|.|| .+..|..||||++.+.... ++||++++++.||.|||+|.|.+..+. ....|+|+|||++.|
T Consensus 17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~ 96 (130)
T d1dqva1 17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 96 (130)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence 36799999999999 5667899999999995433 346999999999999999999886554 346799999999999
Q ss_pred CC-cccceEEEEecceeecc--eecceeecCCC
Q 000124 2084 GK-STLGKVTIQIDKVVTEG--VYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~--~~~~~~~l~~~ 2113 (2138)
|+ +.+|+|.|.+....... ...-+|.|.+.
T Consensus 97 ~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 97 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 76 56999999765544433 22347887764
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.4e-13 Score=183.66 Aligned_cols=417 Identities=14% Similarity=0.103 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 448 VREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 448 vq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
.+..++.+|..++....+. +. .-.++.+.+.+.+.+...|+.|+.+|+.++....+..... -...++.|+..+.+
T Consensus 373 ~r~~a~~~L~~l~~~~~~~---il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d 447 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSD 447 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSS---SH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHhhhhHHH---HH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccC
Confidence 4666666666666432111 11 1234566677788899999999999999886432221111 12356778888889
Q ss_pred CCHHHHHHHHHHHHHHhcCC--hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHH
Q 000124 528 GSQKAREVAAHVLWILCCHS--EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLL 598 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~s--d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li 598 (2138)
.++.+|..++++|+.++... ...... -...++.++..+.+.++.++..|+++|.++..... ...++.+.
T Consensus 448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~--~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~ 525 (888)
T d1qbkb_ 448 KKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 525 (888)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHSSCHHHH--TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999999999886411 111111 14466777788888999999999999999986532 23566777
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcc----hHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChh--
Q 000124 599 ALLLGDSPSSKAHVIKVLGHVLTMALQ----EDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQD-- 670 (2138)
Q Consensus 599 ~LL~~~d~~V~~~A~~AL~~La~~~~~----~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e-- 670 (2138)
..+...+......+.++++.+...... ++... ..++.+....+.- +..........+..++....+
T Consensus 526 ~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~------~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~ 599 (888)
T d1qbkb_ 526 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ------MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599 (888)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH------HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777777777888877643211 11111 1233344333221 122222334444444331111
Q ss_pred --hhhhhhhCCCHHHHHH--------Hh-----ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc
Q 000124 671 --ICGSLATDEIVNPCMR--------LL-----TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT 735 (2138)
Q Consensus 671 --~r~~Ive~GaV~~Lv~--------LL-----~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s 735 (2138)
....+.+ ..+..+.. .. ...+......+...+..+...... .....+.....++.+...+.+
T Consensus 600 ~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~l~~~l~~~l~~ 676 (888)
T d1qbkb_ 600 LPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQD 676 (888)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTT--TTHHHHHTSCHHHHHHHHHTC
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhh--hhhhhhhHhhHHHHHHHHhCC
Confidence 1111110 01111111 11 112334555556666666542221 222223344566778888899
Q ss_pred CCHHHHHHHHHHHHHhhCC--chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHH
Q 000124 736 SSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVL 813 (2138)
Q Consensus 736 ~s~~Vr~eAl~ALaNLa~~--~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~ 813 (2138)
.+.+++..|..+++.++.. +.....+ ...++.+...+.+....++.+|+++++.++..- ++.+... -...+.
T Consensus 677 ~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~--~~~~~py--~~~il~ 750 (888)
T d1qbkb_ 677 KMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--GIEMQPY--IPMVLH 750 (888)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT--GGGGGGG--SHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH--HHHhhhh--HHHHHH
Confidence 9999999999999988652 2222211 235666777777788899999999999998753 2333221 156788
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhc-CChHHHHHHHHHHHHhhccC
Q 000124 814 TLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 814 ~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~AieiL~~L~~~~ 892 (2138)
.|+..++..+.....+..+..++|.|+...+. ...| -.+..++++...+.. ++..-+..|...+++++..+
T Consensus 751 ~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~--~~~~------~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~ 822 (888)
T d1qbkb_ 751 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQ--EVAP------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 822 (888)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH--HHGG------GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH--HHHh------hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHC
Confidence 99999987777766788899999988853211 1100 012234444444443 34446788999999999887
Q ss_pred Cc
Q 000124 893 PA 894 (2138)
Q Consensus 893 ~~ 894 (2138)
|.
T Consensus 823 p~ 824 (888)
T d1qbkb_ 823 PS 824 (888)
T ss_dssp GG
T ss_pred cH
Confidence 75
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=3e-13 Score=141.19 Aligned_cols=103 Identities=18% Similarity=0.274 Sum_probs=83.9
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~ 2081 (2138)
-|-|.|+|++|.|| .+.-|..||||++.+. +..++||++++++.||.|||+|.|.+..+. .+..|.|.||+++
T Consensus 14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~ 93 (137)
T d2cm5a1 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 93 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence 37799999999999 4556899999999983 333447999999999999999999875433 3567999999999
Q ss_pred CCCCc-ccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+++++ .+|+|.|.+..+- + ....+|+|.+.
T Consensus 94 ~~~~~~~iG~~~i~l~~~~-~-~~~~W~~l~~~ 124 (137)
T d2cm5a1 94 IGKSNDYIGGCQLGISAKG-E-RLKHWYECLKN 124 (137)
T ss_dssp SSSCCEEEEEEEEETTCCH-H-HHHHHHHHHHC
T ss_pred CCCCCCEEEEEEeCccccC-c-chhhhhhHhhC
Confidence 98665 6999999998753 3 35678999888
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.6e-13 Score=137.91 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=76.4
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCC--CCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPP--KGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--~~~~l~~~~~~~~ 2081 (2138)
+-|.|+|++|.|| .+.-|..||||++.+.. ..++||+++++++||.|||+|.|..-.++ .+..|+|+||+++
T Consensus 14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~ 93 (125)
T d2bwqa1 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93 (125)
T ss_dssp TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence 5699999999999 45568899999999932 22346999999999999999999532222 3567999999999
Q ss_pred CCCCc---ccceEEEEecceeecceecceeec
Q 000124 2082 TFGKS---TLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2082 ~~~k~---~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
.++++ .+|+|.|.|.++..++. .++|+|
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 94 RVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp ------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred CCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 88554 59999999999877765 578887
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.4e-12 Score=136.78 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=78.4
Q ss_pred ceEEEEEecccccc--cccCC-CCceEEEEec--CCCCccccccccCCCCCccccceee-ecCCC-CCCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLK--QTMGT-TNAFCRLTIG--NGPPRQTKVVSHSISPEWKEGFTWA-FDVPP-KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~-~~~~~~~~~~--~~~~~~t~~~~~~~~p~w~~~f~~~-~~~~p-~~~~l~~~~~~~~~ 2082 (2138)
+.|.|+|++|+||. +.-|. .||||++++. +..++||||+++++||.|||+|.|. +...- .+..|+|+||+++.
T Consensus 22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~ 101 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101 (138)
T ss_dssp TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence 57999999999993 33344 6999999994 3334469999999999999999995 22111 13479999999999
Q ss_pred CCC-cccceEEEEeccee-ecceecceeecCCC
Q 000124 2083 FGK-STLGKVTIQIDKVV-TEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~-~~~~~~~~~~l~~~ 2113 (2138)
|++ +.+|.|.|.|.++- .++.....+.+...
T Consensus 102 ~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~ 134 (138)
T d1ugka_ 102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence 974 67999999999984 45555555554433
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=3.9e-07 Score=117.46 Aligned_cols=763 Identities=14% Similarity=0.123 Sum_probs=386.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhccCchh
Q 000124 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDEDL 117 (2138)
Q Consensus 40 ~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~~e~~ 117 (2138)
.+.++++..- .+++...|..|-..|..+...+. .+.+..|.+.+.+. +..+|..|+-.|++.......
T Consensus 5 ~~~~~L~~~~-~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~ 74 (861)
T d2bpta1 5 EFAQLLENSI-LSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccc
Confidence 3555554431 24677889999999988876541 34677888888764 567888888888876532111
Q ss_pred --HHH----HH-------hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCC
Q 000124 118 --RLK----VL-------LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184 (2138)
Q Consensus 118 --r~~----v~-------~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s 184 (2138)
... .. ....-..+++.+.++++.+|..++.++..++....+ + +. . ...++.|++.+.+.+
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p-~--~~--w--peli~~L~~~~~s~~ 147 (861)
T d2bpta1 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP-H--GA--W--PELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-G--TC--C--HHHHHHHHHHTSTTS
T ss_pred hhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-c--Cc--h--HHHHHHHHHHhcCCC
Confidence 000 00 001235667788888999999999999998852110 0 00 0 126778888887654
Q ss_pred CCChhHHHHHHHHHHHHhcCCCchhHHHHH--hCcHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcCCC-cchhhccch
Q 000124 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLS--SDNAAAQSNAASLLARLMLAFGDS-IPTVIDSGA 259 (2138)
Q Consensus 185 ~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e--~GGI~~Lv~lL~--s~s~evq~~A~~aL~nLs~~~~e~-r~~l~~~Ga 259 (2138)
...++..++.+|..+|.........+.. ..-+..+...+. ..+..++..++.++.++....... .........
T Consensus 148 --~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 225 (861)
T d2bpta1 148 --PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL 225 (861)
T ss_dssp --CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHH
Confidence 2346778899999998664322111111 011233344443 345789999999998877322111 111112335
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHH-hhcCCchhhhhhhhhhhhHHHHHHHHHHhh
Q 000124 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIG-AIVAPSKECMQGQRGQALQGHATRALANIY 338 (2138)
Q Consensus 260 L~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~-LL~s~s~e~mq~~~~~alqe~Al~ALanIs 338 (2138)
++.+...+. +.+..++..+..++..+.....+.-..... ..+..++. ...+.+.. ++..+...+..++
T Consensus 226 ~~~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~---------v~~~~~~~l~~l~ 294 (861)
T d2bpta1 226 MQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDK---------VASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHH---------HHHHHHHHHHHHH
T ss_pred HHhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHH---------HHHHHHHHHHHHH
Confidence 556666666 467788888888888876631111000000 11222221 11122211 3333333333332
Q ss_pred cCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchh---hHHHHHHHHcCCCChhHHHHHHHHHH
Q 000124 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDAR---QIEDILVMLLKPHDNKLVQERVLEAM 415 (2138)
Q Consensus 339 Ggis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~---~Ie~~LV~LL~s~~~e~vr~~Aa~AL 415 (2138)
..... .......+. ........+... .+.+.+...+...+.+
T Consensus 295 ~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~---------- 339 (861)
T d2bpta1 295 EEEID------------------------IAYELAQFP-QSPLQSYNFALSSIKDVVPNLLNLLTRQNED---------- 339 (861)
T ss_dssp HHHHH------------------------HHHHHHHCT-TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC----------
T ss_pred HHHHH------------------------HHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 10000 000000000 000000000000 0111111111111000
Q ss_pred HHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHH
Q 000124 416 ASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495 (2138)
Q Consensus 416 ~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa 495 (2138)
....+...+..+..++..++...++... .-..+.+...+.+.+...+..+.
T Consensus 340 -------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~ 390 (861)
T d2bpta1 340 -------------------------PEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp --------------------------CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -------------------------ccchhHHHHHHHHHHHHHHHhhcchhhh----hhhcchhhhhhhhHHHHHHHHHH
Confidence 0011223444555555555543221110 11233445566778888999999
Q ss_pred HHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc---ccCCh
Q 000124 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL---KSGGP 572 (2138)
Q Consensus 496 ~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL---kS~~~ 572 (2138)
.+++.+............-...++.++..+.+.++.+|..++++++.+..... ..+.....++.++..+ ...++
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~ 467 (861)
T d2bpta1 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA---ESIDPQQHLPGVVQACLIGLQDHP 467 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG---GGSCTTTTHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc---hhhhhHHhhhhhhHHHHhccccCh
Confidence 99988876433332222223467888888889999999999999998864210 0011122233333221 24567
Q ss_pred hHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcC--CCcchHHHHHHHHHHHHhhhcch--HHHHhhhcccc
Q 000124 573 KGQDASAMALTKLIRAAD-----------SATINQLLALLLG--DSPSSKAHVIKVLGHVLTMALQE--DLVQKGSAANK 637 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~--~d~~V~~~A~~AL~~La~~~~~~--d~v~~~l~~~G 637 (2138)
.++..+++++.++..... ...+..++..... .+..++..+..++..+....... +..... ...
T Consensus 468 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l--~~~ 545 (861)
T d2bpta1 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI--STF 545 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHH
Confidence 888889998888875421 1234455555543 33456677777777765432221 111110 011
Q ss_pred hhhHHHHhhcCC----C-------HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHH
Q 000124 638 GLRSLVQVLNSS----N-------EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGA 705 (2138)
Q Consensus 638 aI~aLV~LLks~----s-------~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg-s~~Vk~~AA~ALan 705 (2138)
....+...+... . .+.+..+..++..+....++..... -...++.+.+.+... +..++..+..+++.
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~ 624 (861)
T d2bpta1 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhcccCCchhHHHHHHHHHHH
Confidence 122222222211 1 2334444555555544222222111 123455666666554 45688888889888
Q ss_pred hcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCC--CHHH
Q 000124 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEG--TSEG 781 (2138)
Q Consensus 706 La~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~--~~~V 781 (2138)
++..... .... .-..+++.|+..+.+.+..++..|+.+++.++. .......+ ...++.|.+.+.+. +..+
T Consensus 625 l~~~~~~--~~~~--~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~ 698 (861)
T d2bpta1 625 LAASLGK--GFEK--YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARREL 698 (861)
T ss_dssp HHHHHGG--GGHH--HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHhhH--HHHH--HHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhH--HHHHHHHHHHhCCCCCCHHH
Confidence 8763222 2211 112467888888999999999999999998864 22222222 23677788887754 5789
Q ss_pred HHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCc---------hhHHHHHHHHHHHhhc-ccCCcccCC
Q 000124 782 KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG---------TDVADALEVVALLART-KQGLNFTYP 851 (2138)
Q Consensus 782 r~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~---------~~~~~AL~ALa~La~~-~~~~~~i~~ 851 (2138)
|..+..+++.++..- ++.+...+ ...++.+...+....++. ..+..++.++..+... +.......|
T Consensus 699 k~~~~~~l~~i~~~~--~~~~~~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p 774 (861)
T d2bpta1 699 KPAVLSVFGDIASNI--GADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp HHHHHHHHHHHHHHH--GGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999988642 12221111 223444444444222211 1233344443333221 111000110
Q ss_pred cccccccCCCchHHHHHhhhc----CChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCC
Q 000124 852 PWAALAEVPSSIEPLVCCLAE----GPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSS 919 (2138)
Q Consensus 852 ~~~~~~~~~~~L~~Lv~ll~~----~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~ 919 (2138)
. .+..+..+.....+ .+..+...++..+.+++...+..+.... -.+.|+..++.+...+..
T Consensus 775 ~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 839 (861)
T d2bpta1 775 Y------VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQF-YGQDWVIDYIKRTRSGQL 839 (861)
T ss_dssp G------HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGG-TTCHHHHHHHHHHHHCSS
T ss_pred H------HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHH-HhhHHHHHHHHHHHhCcc
Confidence 0 11112222222222 3455777888899888876654222211 123667777776555443
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=8e-13 Score=138.49 Aligned_cols=102 Identities=11% Similarity=0.215 Sum_probs=79.0
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCC----ccccccccCCCCCccccceeeecCCCCCC-eEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~~ 2082 (2138)
|-|.|+|++|.|| .+..|+.||||++++..+.. +||++++++.||.|||+|.|.+....+.+ .|+|.||+++.
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~ 94 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 94 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence 6799999999999 56668899999999844432 36999999999999999999886665655 49999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|+ .+.+|+|.|.+..+ .+| +..+|.+..+
T Consensus 95 ~~~~~~iG~~~i~l~~~-~~~-~~hW~~ll~~ 124 (138)
T d1w15a_ 95 GSRNEVIGRLVLGATAE-GSG-GGHWKEICDF 124 (138)
T ss_dssp TSCCEEEEEEEESTTCC-SHH-HHHHHHHHHS
T ss_pred CCCCCEEEEEEEcchhC-Cch-HHHHHHHHhC
Confidence 86 57999999999763 222 3456777666
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.8e-12 Score=138.76 Aligned_cols=94 Identities=20% Similarity=0.424 Sum_probs=78.6
Q ss_pred hhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecCCCC----ccccccccCCCCCccccceeeecCCCCC-CeEEE
Q 000124 2005 LHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHI 2075 (2138)
Q Consensus 2005 ~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~ 2075 (2138)
|++.| |-|.|+|++|.|| .+..|..||||++.+..+.. +||+++++++||.|||+|.|.+..+.+. ..|+|
T Consensus 18 l~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i 97 (157)
T d1uowa_ 18 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 97 (157)
T ss_dssp EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred EEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEE
Confidence 44556 7899999999999 46668999999999966543 3699999999999999999987655543 48999
Q ss_pred EEeecCCCCCc-ccceEEEEecce
Q 000124 2076 ICKSKNTFGKS-TLGKVTIQIDKV 2098 (2138)
Q Consensus 2076 ~~~~~~~~~k~-~~g~~~~~~~~v 2098 (2138)
.||+++.|+|+ .+|+|.|.++.+
T Consensus 98 ~v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 98 TVLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EEEECCSSSCCCEEEEEEEETTCC
T ss_pred EEcccCCCCCCceeEEEEEecccC
Confidence 99999999755 799999999765
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=6.3e-13 Score=140.38 Aligned_cols=108 Identities=19% Similarity=0.351 Sum_probs=86.7
Q ss_pred hhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecCCCC----ccccccccCCCCCccccceeeecC-CCCCCeEEE
Q 000124 2005 LHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP----RQTKVVSHSISPEWKEGFTWAFDV-PPKGQKLHI 2075 (2138)
Q Consensus 2005 ~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~t~~~~~~~~p~w~~~f~~~~~~-~p~~~~l~~ 2075 (2138)
|.+.| |.|.|+|++|.|| .+..|..||||++.+..++. +||+++++++||.|||+|.|.+.. ......|.|
T Consensus 13 l~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v 92 (145)
T d1dqva2 13 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 92 (145)
T ss_dssp EEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCC
T ss_pred EEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEE
Confidence 45555 8999999999999 46668889999999854433 369999999999999999996542 124568999
Q ss_pred EEeecCCCCCc-ccceEEEEecceeecceecceeecCCC
Q 000124 2076 ICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2076 ~~~~~~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+|++++.++++ .+|+|.|.++.+-.+| ...+|.|...
T Consensus 93 ~v~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~~~ 130 (145)
T d1dqva2 93 AVVDYDCIGHNEVIGVCRVGPEAADPHG-REHWAEMLAN 130 (145)
T ss_dssp EEEECCSSSCCEEEEECCCSSCTTCHHH-HHHHHTSSSS
T ss_pred EEEecCCCCCCcEEEEEEECchHcCchh-hHHHHHHHhC
Confidence 99999999765 6999999998765444 4778888776
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=8.7e-12 Score=128.35 Aligned_cols=105 Identities=13% Similarity=0.273 Sum_probs=82.5
Q ss_pred EEEEecccccccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCccc
Q 000124 2013 TVTIKRGNNLKQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTL 2088 (2138)
Q Consensus 2013 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~ 2088 (2138)
.|.++....++...|..||||++.++.. ..|+|++.+||.||+|||+|+|.+++ ++.|.|.|++++ ++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~---~~~l~i~V~d~d---d~~~ 81 (123)
T d1bdya_ 8 SFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAA---EDPM 81 (123)
T ss_dssp EEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT---TCEEEEEEEEET---TEEE
T ss_pred EEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc---ccEEEEEEEEcc---cccc
Confidence 4445555666777788999999999442 13459999999999999999999985 478999999986 6789
Q ss_pred ceEEEEecceee-----cceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2089 GKVTIQIDKVVT-----EGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2089 g~~~~~~~~v~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
|++.|.+.++.. ++....+|.|.+. |+ +.++++|=
T Consensus 82 g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~----Gk---l~l~v~~f 121 (123)
T d1bdya_ 82 SEVTVGVSVLAERCKKNNGKAEFWLDLQPQ----AK---VLMCVQYF 121 (123)
T ss_dssp EEEEEEHHHHHHHHHTTTTEEEEEEECBSS----CE---EEEEEEEE
T ss_pred CccEEehhheeeccccCCCcccEEEeCCCC----EE---EEEEEEEe
Confidence 999999998865 4566678888654 44 55999983
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.1e-06 Score=111.08 Aligned_cols=792 Identities=13% Similarity=0.051 Sum_probs=375.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhccC--chhHHHHH-----
Q 000124 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKD--EDLRLKVL----- 122 (2138)
Q Consensus 52 s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~~--e~~r~~v~----- 122 (2138)
+++.+.|..|-..|..+...+ ..|.+..|.+.+.+. +..+|..|+-.|++.... ...+....
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~---------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~ 82 (876)
T d1qgra_ 12 SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhcC---------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccccc
Confidence 577888999999998887664 135678888888664 467898888888876422 11111100
Q ss_pred -----hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000124 123 -----LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2138)
Q Consensus 123 -----~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~a 197 (2138)
....-..+++.+.+++. .+..++.++..++....+ .+. =.+.+|.|.+.+.+++ ....++..++.+
T Consensus 83 i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p---~~~----Wpeli~~L~~~l~~~~-~~~~~~~~~l~~ 153 (876)
T d1qgra_ 83 IDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIP---VNQ----WPELIPQLVANVTNPN-STEHMKESTLEA 153 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGG---GTC----CTTHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCC---ccc----cHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 11223567778877553 455677888777752100 000 0257899999887654 234577788999
Q ss_pred HHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhhccchHHHHHHHhccCCCHh
Q 000124 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVKALVQLVGQNNDIS 274 (2138)
Q Consensus 198 L~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~-r~~l~~~GaL~~LL~LL~s~sd~~ 274 (2138)
|..+|..-......-.-...++.++..+.+. +.+++..++.++.+........ .......-.++.+...+. +.+..
T Consensus 154 l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~ 232 (876)
T d1qgra_ 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTR 232 (876)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-CCCHH
Confidence 9999864322111111112367777777554 4678899988888776321100 011111224445555555 46778
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCC
Q 000124 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQS 354 (2138)
Q Consensus 275 vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~ 354 (2138)
++..+..++..+....++.-.........+.+.....+...+ +...+...+..++...........+.
T Consensus 233 v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~--- 300 (876)
T d1qgra_ 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEEMDLAIEASEA--- 300 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHH---------HHHHHHHHHHHHHHHHHHHHHHhhHH---
Confidence 888899888888664222111112122223333333333222 22233333333321100000000000
Q ss_pred CCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch---hhHHHHHHHHcCCC------ChhHHHHHHHHHHHHhhcCchhH
Q 000124 355 PRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA---RQIEDILVMLLKPH------DNKLVQERVLEAMASLYGNIFLS 425 (2138)
Q Consensus 355 ~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~---~~Ie~~LV~LL~s~------~~e~vr~~Aa~AL~~L~~n~~~~ 425 (2138)
.. ... ........+.. ..+.+.+...+... +...++..+..++..+.....
T Consensus 301 ----------------~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-- 360 (876)
T d1qgra_ 301 ----------------AE-QGR-PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (876)
T ss_dssp ----------------HH-HSS-CCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--
T ss_pred ----------------HH-hhh-hHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhh--
Confidence 00 000 00000001100 11223333333221 111255555555555432110
Q ss_pred HHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC
Q 000124 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s 505 (2138)
..+ -...++.+...+.+.+...+..++..+..+..........-.-...++.+...+.++++.+|..++++++.++...
T Consensus 361 ~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T d1qgra_ 361 DDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred hhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence 000 0112344555667778888888888888776542222111122456788889999999999999999999988643
Q ss_pred chhHHHHHhcCCchHHHHHhh---hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHH
Q 000124 506 DDSKWAITAAGGIPPLVQLLE---AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL 582 (2138)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LLk---s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL 582 (2138)
... ......++.++..+. +.++.++..+++++.++..... .....+..........-..-.......|
T Consensus 440 ~~~---~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~------~~~~~~~~~~~~~~~~l~~~~~~i~~~l 510 (876)
T d1qgra_ 440 PEA---AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAY------EAADVADDQEEPATYCLSSSFELIVQKL 510 (876)
T ss_dssp GGG---TSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH------HTTSCTTSCCCCCCCSSTTTHHHHHHHH
T ss_pred chh---hhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 221 111233444444432 3478889999999998853100 0011111111100000000001111111
Q ss_pred HHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--hHHHHhhhcccchhhHHHHhhcC------CC----
Q 000124 583 TKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ--EDLVQKGSAANKGLRSLVQVLNS------SN---- 650 (2138)
Q Consensus 583 ~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~--~d~v~~~l~~~GaI~aLV~LLks------~s---- 650 (2138)
.......+ .....++..+.+++..+...... ...+... -...++.+...+.. ..
T Consensus 511 ~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~ 576 (876)
T d1qgra_ 511 LETTDRPD------------GHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT--TLVIMERLQQVLQMESHIQSTSDRIQ 576 (876)
T ss_dssp HHHTTSCS------------SCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH--HHHHHHHHHHHHTTTTSCCSTTHHHH
T ss_pred HHHHHhhc------------cccHhHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhhcchhhhHH
Confidence 11111000 01111222222222222211000 0000000 00011111111111 11
Q ss_pred -HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChh
Q 000124 651 -EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727 (2138)
Q Consensus 651 -~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~ 727 (2138)
.+.+.....++.++..........-.....++.+..++.. ++..++..+..++..+...... .... .-..+++
T Consensus 577 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~--~~~~--~l~~ii~ 652 (876)
T d1qgra_ 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--EFLK--YMEAFKP 652 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG--GGGG--GHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcch--hhHH--HHHHHHH
Confidence 1223334444444443211111111112345566666653 4557888889999888752222 1111 1123667
Q ss_pred hHHhhhhcC-CHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcCCCchhhhh
Q 000124 728 PLIKLAKTS-SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKG 804 (2138)
Q Consensus 728 ~Lv~LL~s~-s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~~~~d~i~~ 804 (2138)
.+...+.+. +++++..|+..++.+.......-.-.....++.+.+.+.+. +..+|..+.++++.++..- ++.+..
T Consensus 653 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~--~~~~~~ 730 (876)
T d1qgra_ 653 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI--GGEFKK 730 (876)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH--GGGGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH--hHhhHH
Confidence 777777764 57799999999988864221111111234677788888654 5789999999999988642 122211
Q ss_pred hhhhhhhHHHHHHhhccCCC-Cch--------hHHHHHHHHHHHh-hcccCCcccCCcccccccCCCchHHHHHhh----
Q 000124 805 NAQCRFVVLTLVDSLNAMDM-NGT--------DVADALEVVALLA-RTKQGLNFTYPPWAALAEVPSSIEPLVCCL---- 870 (2138)
Q Consensus 805 ~i~~~gav~~LV~LL~s~~~-~~~--------~~~~AL~ALa~La-~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll---- 870 (2138)
.+ ...++.+....+...+ ... .+...+.+...+- ..+.......+.+. ....+++.+..+.
T Consensus 731 yl--~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~i~~~i~~~~ 805 (876)
T d1qgra_ 731 YL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVM---LVQPRVEFILSFIDHIA 805 (876)
T ss_dssp GH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG---GSGGGHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHH---HHHHHHHHHHHHHHHHh
Confidence 11 1123333333321111 111 1222333222221 11111111111111 1122445554432
Q ss_pred --hcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHH
Q 000124 871 --AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930 (2138)
Q Consensus 871 --~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~ 930 (2138)
...+..+...|+..|..++...+.-...... ...||..++.+-..++..+.|..+.++.
T Consensus 806 ~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~-~~~~v~~ll~~~~~s~~~~~~~~a~~~~ 866 (876)
T d1qgra_ 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE-ARPMIHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH-TSHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2334557888999998887655431122222 3368888999988888888887765543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=7.8e-07 Score=114.59 Aligned_cols=583 Identities=13% Similarity=0.116 Sum_probs=316.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhcc-CCCHhHHHHHHHHHHHHhhcC-------
Q 000124 219 DIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ-NNDISVRASAADALEALSSKS------- 290 (2138)
Q Consensus 219 ~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s-~sd~~vr~~Aa~aL~nLs~~s------- 290 (2138)
+.|...+.++++++|..|-..|.++...+ ..+.+..|+.++.+ ..+..+|..|.-.|+|.....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence 34445566778999999988888876321 13577888888864 345678888888887765432
Q ss_pred ----------HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhh------cCchhHHHHhhhhcCC
Q 000124 291 ----------IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY------GGMPALVVYLGELSQS 354 (2138)
Q Consensus 291 ----------~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIs------Ggis~LI~~L~elL~~ 354 (2138)
++.|..+ -..++..+.++++. ++..+..+++.+. +.-+.+++.|.+.+.+
T Consensus 80 ~~~~~~~~i~~~~~~~i-----k~~ll~~l~~~~~~---------vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s 145 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQI-----KTNALTALVSIEPR---------IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGA 145 (861)
T ss_dssp HHHHHHHHSCHHHHHHH-----HHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTST
T ss_pred HHhhhHhcCCHHHHHHH-----HHHHHHHHcCCCHH---------HHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcC
Confidence 2222222 24566666665533 5555666666654 2345577877777766
Q ss_pred CCchhh---HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHH----HcCCCChhHHHHHHHHHHHHhhcCch--hH
Q 000124 355 PRLAAP---VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVM----LLKPHDNKLVQERVLEAMASLYGNIF--LS 425 (2138)
Q Consensus 355 ~~ss~~---~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~----LL~s~~~e~vr~~Aa~AL~~L~~n~~--~~ 425 (2138)
.+.... +..++..++... + +. ....+ ..+.+.|.. +........++..+..++.++...-. ..
T Consensus 146 ~~~~~~~~~al~~l~~i~e~~---~--~~-~~~~~--~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 217 (861)
T d2bpta1 146 EQPENVKRASLLALGYMCESA---D--PQ-SQALV--SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHTS---S--TT-SSTTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHh---h--HH-HHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHH
Confidence 554322 223344333211 1 11 11111 122233333 33334445588999999988754321 11
Q ss_pred HHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC
Q 000124 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s 505 (2138)
........++.+...+...+++++..+..+|..+....+..-......-....+....++.++.++..+...+..++...
T Consensus 218 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~ 297 (861)
T d2bpta1 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 11122335677788888899999999999999887653332111111111222344556677778887777776654321
Q ss_pred chhHHHHH---------------------------------------------------------hcCCchHHHH----H
Q 000124 506 DDSKWAIT---------------------------------------------------------AAGGIPPLVQ----L 524 (2138)
Q Consensus 506 ~e~r~~I~---------------------------------------------------------~aGaIp~LV~----L 524 (2138)
........ ....++.+.. .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 377 (861)
T d2bpta1 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhh
Confidence 10000000 0001111111 1
Q ss_pred hhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHH
Q 000124 525 LEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLA 599 (2138)
Q Consensus 525 Lks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~Li~ 599 (2138)
+.+.+...++.+..++..+..........-.-...++.++..+.+.++.++..++++++.++..- ....++.++.
T Consensus 378 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~ 457 (861)
T d2bpta1 378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhH
Confidence 22335566666666666665432211111011335677788889999999999999999987652 1222333333
Q ss_pred Hh---cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC--CCHHHHHHHHHHHHHHhhcChhhhhh
Q 000124 600 LL---LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDICGS 674 (2138)
Q Consensus 600 LL---~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks--~s~evre~Aa~ALanL~s~~~e~r~~ 674 (2138)
.+ ..+++.+...++.++..+.............-.....+..++..... .+..++..+..++..+....++....
T Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~ 537 (861)
T d2bpta1 458 ACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAE 537 (861)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22 13445566666666666643211100000000011224445554433 35668888888888886543333222
Q ss_pred hhh---CCCHHHHHHHhccCC-----------HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHH
Q 000124 675 LAT---DEIVNPCMRLLTSNT-----------QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSID 739 (2138)
Q Consensus 675 Ive---~GaV~~Lv~LL~dgs-----------~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~ 739 (2138)
... ....+.+...+.... ..++..+..++..+....+. .... .....+..+...+.. .+..
T Consensus 538 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~--~~~~l~~~l~~~l~~~~~~~ 613 (861)
T d2bpta1 538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEP--VADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGG--GHHHHHHHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchh--hHHH--HHHHHHHHHhhhcccCCchh
Confidence 111 111222222222111 12344444555555431111 1110 112244555565654 4466
Q ss_pred HHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHH
Q 000124 740 AAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVD 817 (2138)
Q Consensus 740 Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~ 817 (2138)
+++.++.++++++. .+.....+ +..+|.|...+.+.++.++..|+.+++.++...+ +.+... ....+..|++
T Consensus 614 v~~~~l~~l~~l~~~~~~~~~~~l--~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~--~~~~~~--~~~i~~~L~~ 687 (861)
T d2bpta1 614 IEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--EDFRRY--SDAMMNVLAQ 687 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG--GGGHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH--HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH--HHhHhh--HHHHHHHHHH
Confidence 78888888888865 23333333 2478888899999999999999999999987532 222211 1446777888
Q ss_pred hhccCCCCchhHHHHHHHHHHHhh
Q 000124 818 SLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 818 LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
.+...+.+...+..++.+++.++.
T Consensus 688 ~l~~~~~~~~~k~~~~~~l~~i~~ 711 (861)
T d2bpta1 688 MISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 887666666678899999998875
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.2e-10 Score=155.24 Aligned_cols=665 Identities=15% Similarity=0.131 Sum_probs=354.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 000124 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKI 166 (2138)
Q Consensus 87 p~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~ 166 (2138)
..++..|.+.++.+|..++.++..++....... =-+.++.|++++.+++..+++.|+.+|..++.. . ...
T Consensus 91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~---Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~-----~--~~~ 160 (888)
T d1qbkb_ 91 SECLNNIGDSSPLIRATVGILITTIASKGELQN---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICED-----S--AEI 160 (888)
T ss_dssp HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCS---STTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGG-----G--HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----h--HHH
Confidence 445566666777777777777766653211100 014577777777776777788888888888741 1 111
Q ss_pred HHH-------cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000124 167 FVT-------EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239 (2138)
Q Consensus 167 Ive-------aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~a 239 (2138)
+.. ...+|.+++.+.+.+ +.++..++.++..+............ ..-++.+......++++++..++.+
T Consensus 161 ~~~~~~~~~~~~ll~~ll~~~~~~~---~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~ 236 (888)
T d1qbkb_ 161 LDSDVLDRPLNIMIPKFLQFFKHSS---PKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEEPEVRKNVCRA 236 (888)
T ss_dssp HHTC---CCSTTTTHHHHTGGGSSS---SCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHH
Confidence 111 237888888887654 23667788888877655432211111 1245677777777888999999999
Q ss_pred HHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC----Cch
Q 000124 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA----PSK 315 (2138)
Q Consensus 240 L~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s----~s~ 315 (2138)
|..+....++...... .+.++.++..+. +.+..++..|...+..++.. ...+..+ ...++.++..+.. ...
T Consensus 237 l~~l~~~~~~~l~~~l-~~i~~~~l~~~~-~~~e~v~~~a~ef~~~~~e~-~~~~~~~--~~~l~~l~~~l~~~~~~~~~ 311 (888)
T d1qbkb_ 237 LVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALEACEFWLTLAEQ-PICKDVL--VRHLPKLIPVLVNGMKYSDI 311 (888)
T ss_dssp TTTTSCSCTTTTTTTT-TTTTTTTTTTTT-SSCHHHHHHHHHHHCCCCSG-GGGTTTT--TTSTTTTTTTTTTSSCCSST
T ss_pred HHHHHHHhHHHHHHHH-HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHh-hhhHHHH--HHHHHHHHHHHHHHhhcchH
Confidence 9887744433222111 134444444444 45667777777666555432 1111111 1112222222211 111
Q ss_pred hhhhhhhhhhhHHHH--HHHHHHhhc-----------CchhHHHHh----hhhcCCCCc----hhhHHHHHHHHHHHHHH
Q 000124 316 ECMQGQRGQALQGHA--TRALANIYG-----------GMPALVVYL----GELSQSPRL----AAPVADIIGALAYALMV 374 (2138)
Q Consensus 316 e~mq~~~~~alqe~A--l~ALanIsG-----------gis~LI~~L----~elL~~~~s----s~~~A~~L~aLa~~l~~ 374 (2138)
+....... ..... ......+.. .....+... .+....... .+.++. .+ ...
T Consensus 312 ~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~----~~--L~~ 383 (888)
T d1qbkb_ 312 DIILLKGD--VEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSA----AA--LDV 383 (888)
T ss_dssp THHHHTTT--SSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHH----HH--STT
T ss_pred HHHHHhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHH----HH--Hhh
Confidence 10000000 00000 000000000 000000000 000000000 011111 01 001
Q ss_pred hhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh--hchHHHHHHHHccCCHHHHHHH
Q 000124 375 FEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH--AEAKKVLIGLITMATADVREYL 452 (2138)
Q Consensus 375 l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e--~~gI~~LV~LL~sss~evq~~A 452 (2138)
+. .......+ ..+.+.+...+.+.+. ..|+.++.+++.+..+.. +.+.. ...++.++..+.+.++.+|..+
T Consensus 384 l~--~~~~~~il--~~~l~~l~~~l~s~~~-~~reaa~~alg~i~eg~~--~~~~~~l~~li~~l~~~l~d~~~~Vr~~a 456 (888)
T d1qbkb_ 384 LA--NVYRDELL--PHILPLLKELLFHHEW-VVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSDKKALVRSIT 456 (888)
T ss_dssp TT--TTCCSSSH--HHHHHHHHHTTTSSSH-HHHHHHHHHHHHHTTTSH--HHHTTTHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred Hh--hhhHHHHH--HHHHHHHHHhhccchh-HHHHHHHHHhhhhhhhHH--HHhcccchhhhHHHHHhccCCCHHHHHHH
Confidence 11 00111111 1234566666766654 488889999999875431 11211 2457888999999999999999
Q ss_pred HHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHH
Q 000124 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 453 a~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~v 532 (2138)
+.+|+.++.........-.-...++.++..+.+.++.++..|+.+|.++.......- .-.-...++.|+..+...+...
T Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~~~~~~~ 535 (888)
T d1qbkb_ 457 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKYQHKN 535 (888)
T ss_dssp HHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS-GGGHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHhhhhHHH
Confidence 999998875321111111124567888888889999999999999999986322110 0111234556666677767777
Q ss_pred HHHHHHHHHHHhcCC-hh--HHHHHHHcCCcchhhhc---cccCChhHHHHHHHHHHHHHHhhchh-------hHHHHHH
Q 000124 533 REVAAHVLWILCCHS-ED--IRACVESAGAVPAFLWL---LKSGGPKGQDASAMALTKLIRAADSA-------TINQLLA 599 (2138)
Q Consensus 533 re~Aa~aL~nLs~~s-d~--~r~~I~e~GaI~aLv~L---LkS~~~evq~~Aa~AL~nLs~~~e~~-------aI~~Li~ 599 (2138)
+..+..++..+.... .. ....+ ...++.+... ..+.+. .......++..+....... ..+.++.
T Consensus 536 ~~~~~~al~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~ 612 (888)
T d1qbkb_ 536 LLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVN 612 (888)
T ss_dssp HHHHHHHHHHHHHHHGGGGCSHHHH--HHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHH--HHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Confidence 776677777664310 00 00110 1112233322 222222 2233444555444331111 1111222
Q ss_pred Hh------------c-----CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHH
Q 000124 600 LL------------L-----GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLA 662 (2138)
Q Consensus 600 LL------------~-----~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALa 662 (2138)
++ . ..+.+....+..+++.+....... ....+.....++.+...+++.++++|+.|..++.
T Consensus 613 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~--~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llg 690 (888)
T d1qbkb_ 613 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 690 (888)
T ss_dssp HHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTT--THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhh--hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 11 1 122334444555566554322111 1111223445677788888899999999999999
Q ss_pred HHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC--CHHH
Q 000124 663 DLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--SIDA 740 (2138)
Q Consensus 663 nL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~--s~~V 740 (2138)
.++...+....... ...++.+.+-|.+....++..|+++++.++..... ..+. .-..+++.|+..++.+ +..+
T Consensus 691 dl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~--~~~p--y~~~il~~L~~il~~~~~~~~v 765 (888)
T d1qbkb_ 691 DLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVLHQLVEIINRPNTPKTL 765 (888)
T ss_dssp HHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG--GGGG--GSHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH--Hhhh--hHHHHHHHHHHHHcCCCccHHH
Confidence 98865444332222 23667777888888889999999999999863322 2221 1234677888888763 4668
Q ss_pred HHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHHHHHHHhhhcCC
Q 000124 741 AETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 741 r~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+++++.+|+.|+. +|+.-.. .-+..++++...|.. ++.+-++.|...++++....|
T Consensus 766 ~~n~~~~lgrl~~~~p~~~~~-~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 766 LENTAITIGRLGYVCPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp HHHHHHHHHHHHHHCHHHHGG-GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHCHHHHHh-hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 8999999999976 4442211 124577888877765 456668899999999987654
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=9.2e-09 Score=116.07 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=191.7
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
..+.|+++|+++++.+|..|+.+|..++. ..+++.|++++++.++.+|..|+.+|..+.........
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-- 86 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 86 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc--
Confidence 45678999999999999999999988764 23579999999999999999999999999653222111
Q ss_pred HHcCCcchhh-hccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000124 555 ESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2138)
Q Consensus 555 ~e~GaI~aLv-~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~ 630 (2138)
.++.+. .++++.++.++..++.+|+++..... ...++.+...+.+.++.++..+..+++..
T Consensus 87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~----------- 151 (276)
T d1oyza_ 87 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI----------- 151 (276)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc-----------
Confidence 122333 35678899999999999999986532 34677788888888888887776665532
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
.....++.+..++...+..++..+..++..+..... ...+.+...+.+.+..++..+..+++.+..
T Consensus 152 ---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-- 217 (276)
T d1oyza_ 152 ---NDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-- 217 (276)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred ---chHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccchhhh--
Confidence 234467888899988899999988888887765322 344567788889999999999999988743
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRAL 789 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL 789 (2138)
..+++.|++.+.++ +++..++.+|+.+. +++.++.|..++.+. +.++|..|..+|
T Consensus 218 ------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 218 ------------KRVLSVLCDELKKN--TVYDDIIEAAGELG----------DKTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp ------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----------CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 23688888888754 58889999998764 456899999988764 788999999887
Q ss_pred H
Q 000124 790 H 790 (2138)
Q Consensus 790 ~ 790 (2138)
.
T Consensus 274 ~ 274 (276)
T d1oyza_ 274 K 274 (276)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.5e-08 Score=114.38 Aligned_cols=254 Identities=15% Similarity=0.070 Sum_probs=192.8
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc--hh
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--SA 592 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--~~ 592 (2138)
....+.|+++|+++++.+|..|+.+|..+.. ..+++.|+.++++.++.++..|+.+|+.+..... ..
T Consensus 18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 3456788999999999999999999998863 2357889999999999999999999998864322 23
Q ss_pred hHHHHHH-HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 593 TINQLLA-LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 593 aI~~Li~-LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
..+.+.. ++++.++.++..+..+|+.+...... .....++.+...+.+.++.++..++.++..+..
T Consensus 87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----- 153 (276)
T d1oyza_ 87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 153 (276)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch--------hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----
Confidence 3444444 56788889999999999887533211 112357778888888899999988888776543
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
...++.+..++.+.+..++..+..++..+.... ...++.++..+.+.+..++..+..++..+
T Consensus 154 ------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 215 (276)
T d1oyza_ 154 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 215 (276)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHhcccccchhhhhHHHHHHhhhccc------------cccchhhhhhhhhhhhhhhhhhccccchh
Confidence 567788999999999999999888888776421 12456678888899999999999999866
Q ss_pred hCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHH
Q 000124 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVAD 831 (2138)
Q Consensus 752 a~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~ 831 (2138)
. ...+++.|++.+.+ +.+|..++++|+.++. ...++.|..++...+ +...+..
T Consensus 216 ~----------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~--------------~~~~~~L~~~l~~~~-d~~vr~~ 268 (276)
T d1oyza_ 216 K----------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD--------------KTLLPVLDTMLYKFD-DNEIITS 268 (276)
T ss_dssp T----------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC--------------GGGHHHHHHHHTTSS-CCHHHHH
T ss_pred h----------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHccCC-CHHHHHH
Confidence 4 35678899988875 4589999999998864 246788888886544 4456888
Q ss_pred HHHHHH
Q 000124 832 ALEVVA 837 (2138)
Q Consensus 832 AL~ALa 837 (2138)
|+++|.
T Consensus 269 A~~~L~ 274 (276)
T d1oyza_ 269 AIDKLK 274 (276)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 888763
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=8.4e-05 Score=95.71 Aligned_cols=627 Identities=14% Similarity=0.099 Sum_probs=338.9
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHH---
Q 000124 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRA--- 211 (2138)
Q Consensus 135 ~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~a--- 211 (2138)
-++|.++|+.|-+.|..+... + -.|.+..|.+.+.+.+ .+..++..|.-.|.|...........
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~----~--------~~~f~~~L~~i~~~~~-~~~~iR~~A~i~lKn~i~~~~~~~~~~~~ 77 (876)
T d1qgra_ 11 VSPDRLELEAAQKFLERAAVE----N--------LPTFLVELSRVLANPG-NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp GCSCHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHhc----C--------hhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 357999999999999988751 1 1247788888886554 34568888998999887654321110
Q ss_pred --------HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc-CCCcchhhccchHHHHHHHhccC-CCHhHHHHHHH
Q 000124 212 --------TLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF-GDSIPTVIDSGAVKALVQLVGQN-NDISVRASAAD 281 (2138)
Q Consensus 212 --------I~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~-~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~ 281 (2138)
=....-...++..+.+++. ++..++.++..++... +.. .=.+.++.++..+.++ .....+..+..
T Consensus 78 ~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~----~Wpeli~~L~~~l~~~~~~~~~~~~~l~ 152 (876)
T d1qgra_ 78 QRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc----ccHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 0011123566777766543 4455677777777321 100 0125788898888643 34566777788
Q ss_pred HHHHHhhcC-HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 282 ALEALSSKS-IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 282 aL~nLs~~s-~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
++..+...- ++.-. -.-...++.++..+.++... ..++..+..++.+.........
T Consensus 153 ~l~~i~~~~~~~~~~-~~~~~il~~i~~~l~~~~~~-------~~v~~~a~~~l~~~~~~~~~~~--------------- 209 (876)
T d1qgra_ 153 AIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPS-------NNVKLAATNALLNSLEFTKANF--------------- 209 (876)
T ss_dssp HHHHHHHHSCHHHHG-GGHHHHHHHHHHHHSTTCSC-------HHHHHHHHHHHHHHGGGCHHHH---------------
T ss_pred HHHHHHHHCCHHHHH-HHHHHHHHHHHHHHcCcCcc-------HHHHHHHHHHHHHHHHHhhhhh---------------
Confidence 877775421 11100 01123345555555433211 0134445555444332111100
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIG 439 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~ 439 (2138)
....+ ...+.+.+...+...+. .++..+..++..+... +..............+..
T Consensus 210 ---------------------~~~~~-~~~i~~~l~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T d1qgra_ 210 ---------------------DKESE-RHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp ---------------------TSHHH-HHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred ---------------------hHHHH-HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00001 11234555666666654 4888888888887533 222111122234455666
Q ss_pred HHccCCHHHHHHHHHHHHHhhhccchhhHH--------------------hhhchhHHHHHHHhcC-------CchhhHH
Q 000124 440 LITMATADVREYLILSLTKLCRREVGIWEA--------------------IGKREGIQLLISLLGL-------SSEQHQE 492 (2138)
Q Consensus 440 LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~--------------------I~e~ggIp~LV~LL~s-------~d~~Vr~ 492 (2138)
.+....+++...+...+..++......... ......++.+...+.. .+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 346 (876)
T d1qgra_ 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHH
Confidence 677778888888888877776532211100 0011223344444422 1223777
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh--HHHHHHHcCCcchhhhccccC
Q 000124 493 YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACVESAGAVPAFLWLLKSG 570 (2138)
Q Consensus 493 ~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~--~r~~I~e~GaI~aLv~LLkS~ 570 (2138)
.+..++..++....+.. . ...++.+.+.+.+.+...++.+...++.+...... .... -...++.++..+.++
T Consensus 347 ~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~l~d~ 420 (876)
T d1qgra_ 347 AAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIELMKDP 420 (876)
T ss_dssp HHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH--HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH--HHHHHHHHHHhhcCC
Confidence 78888877775322210 0 11234445556677899999999998888653222 2222 134577788888999
Q ss_pred ChhHHHHHHHHHHHHHHhh-----chh----hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHH-HHh-------hh
Q 000124 571 GPKGQDASAMALTKLIRAA-----DSA----TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL-VQK-------GS 633 (2138)
Q Consensus 571 ~~evq~~Aa~AL~nLs~~~-----e~~----aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~-v~~-------~l 633 (2138)
++.++..++++++.++... ... .++.+...+ ++++.+...++.++..+......... ... .+
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T d1qgra_ 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999998652 122 233444444 34566777777777776532111000 000 00
Q ss_pred c--ccchhhHHHHhhcCC---CHHHHHHHHHHHHHHhhcChhhhhhhhh---CCCHHHHHHHhccC------CH-----H
Q 000124 634 A--ANKGLRSLVQVLNSS---NEENQEYAASVLADLFSMRQDICGSLAT---DEIVNPCMRLLTSN------TQ-----M 694 (2138)
Q Consensus 634 ~--~~GaI~aLV~LLks~---s~evre~Aa~ALanL~s~~~e~r~~Ive---~GaV~~Lv~LL~dg------s~-----~ 694 (2138)
. -...++.+...+... ...++..+..++..+.....+.....+. ...++.+...+... .. .
T Consensus 500 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 579 (876)
T d1qgra_ 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHH
Confidence 0 012345555555433 4567788888888776543332221111 11222223333211 11 1
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHH
Q 000124 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSAL 770 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~L 770 (2138)
.+.....++.++...... .... -....++..+..++.. ++.++++.++.+++.++. .+..... -+..+|.+
T Consensus 580 ~~~~l~~~l~~~~~~~~~--~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~--l~~ii~~l 654 (876)
T d1qgra_ 580 LQSLLCATLQNVLRKVQH--QDAL-QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY--MEAFKPFL 654 (876)
T ss_dssp HHHHHHHHHHHHHTTSCH--HHHH-TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcch--hhhh-hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHH--HHHHHHHH
Confidence 233344455555542211 1110 0112344555666553 456788888989888864 1111111 12356777
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 771 TRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 771 V~LL~~~-~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
...+.+. +++++..|..+++.+....+ ..+.. -....++.++..+.+...+...+..++.+++.++.
T Consensus 655 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~--~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~ 722 (876)
T d1qgra_ 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQ--SNIIP--FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHHHG--GGGHH--HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhH--Hhhhh--hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence 7777655 57899999999998876431 11211 12456778888887766666778999999998874
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.5e-08 Score=102.00 Aligned_cols=93 Identities=23% Similarity=0.413 Sum_probs=65.4
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCC------CCcccccc--ccCCCCCcccc-ceee-ecCCCCCCeEEEEEeec
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNG------PPRQTKVV--SHSISPEWKEG-FTWA-FDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~~--~~~~~p~w~~~-f~~~-~~~~p~~~~l~~~~~~~ 2080 (2138)
.|+|+|+.|++|-.+ +.||||++.+ -| .+++||++ ++++||.|||+ |.|. ...| ---+|++.|||+
T Consensus 2 tl~V~Visaq~L~~~--~~dPyV~V~l-~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER--SVRTYVEVEL-FGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS--CCCEEEEEEE-ECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC--CCCcEEEEEE-ECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEECC
Confidence 589999999999433 5799999998 32 22234443 66799999987 4333 3333 344999999998
Q ss_pred CCCCCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ .+.+|.+.|.++.+-.--|. .+|.+.
T Consensus 78 d---~~~lG~~~ipl~~l~~GyR~---vpL~~~ 104 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSGYHH---LCLHSE 104 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCEEEE---EEEECT
T ss_pred C---CCEEEEEEEEcccCcCCceE---EEccCC
Confidence 6 68999999999866332222 356555
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=0.00034 Score=82.58 Aligned_cols=417 Identities=10% Similarity=0.026 Sum_probs=224.4
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHH-HHHH
Q 000124 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAK-KAVV 298 (2138)
Q Consensus 221 Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~R-k~i~ 298 (2138)
++.-+-+++.+++..|-..|..+...+ ..+.+..|..++.+. .+..+|..|.-.|++......... ....
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~ 76 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 76 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence 334445678899999999998887322 135778888888543 456788888888887765422211 1111
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCC-CchhhHHHHHHHHHHHHHHhhc
Q 000124 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSP-RLAAPVADIIGALAYALMVFEQ 377 (2138)
Q Consensus 299 e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~-~ss~~~A~~L~aLa~~l~~l~q 377 (2138)
+ ....-+.+ .+..... .+.+.+.+. ......+..+..++....
T Consensus 77 ~---------~~~~l~~~---------~~~~i~~--------------~ll~~~~~~~~~~~~~~~~~~~i~~~~~---- 120 (458)
T d1ibrb_ 77 Q---------RWLAIDAN---------ARREVKN--------------YVLQTLGTETYRPSSASQCVAGIACAEI---- 120 (458)
T ss_dssp H---------HHHTSCHH---------HHHHHHH--------------HHHHHTTCCCSSSCSHHHHHHHHHHHHG----
T ss_pred h---------hhccCCHH---------HHHHHHH--------------HHHhccCCCcHHHHHHHHHHHHHHHHhC----
Confidence 0 00000000 0111111 111111111 112233344443332211
Q ss_pred CCCCCCcccchhhHHHHHHHHcCC-CChhHHHHHHHHHHHHhhcCch-hHHHHhhhchHHHHHHHHcc--CCHHHHHHHH
Q 000124 378 KSGVDDEPFDARQIEDILVMLLKP-HDNKLVQERVLEAMASLYGNIF-LSQWVSHAEAKKVLIGLITM--ATADVREYLI 453 (2138)
Q Consensus 378 ~~~~~~~~~~~~~Ie~~LV~LL~s-~~~e~vr~~Aa~AL~~L~~n~~-~~~~L~e~~gI~~LV~LL~s--ss~evq~~Aa 453 (2138)
+... ...+.+.+...+.+ ......+..++.++..++.... ....-.....++.++..+.. .+.+++..+.
T Consensus 121 -~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~ 194 (458)
T d1ibrb_ 121 -PVNQ-----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAAT 194 (458)
T ss_dssp -GGTC-----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred -Cccc-----CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 1000 11344566655543 3333466677777777643211 10000112235556666654 4578899999
Q ss_pred HHHHHhhhccchhh-HHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHH
Q 000124 454 LSLTKLCRREVGIW-EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA 532 (2138)
Q Consensus 454 ~aL~~Ls~~s~~~~-~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~v 532 (2138)
.++..+........ .........+.+..++.+++++++..+..+|..+....++.-.........+.+...+++.++++
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 274 (458)
T d1ibrb_ 195 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 274 (458)
T ss_dssp HHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 98888776432221 11222334567777888999999999999999998644332111111112233445566778899
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc-------CCC
Q 000124 533 REVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL-------GDS 605 (2138)
Q Consensus 533 re~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~-------~~d 605 (2138)
+..+...+..++.. .................. .............. ..+.+.+.+. +++
T Consensus 275 ~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------l~~~l~~~~~~~~~~~~~~~ 340 (458)
T d1ibrb_ 275 ALQGIEFWSNVCDE--EMDLAIEASEAAEQGRPP-EHTSKFYAKGALQY-----------LVPILTQTLTKQDENDDDDD 340 (458)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHCCTTCSSSCS-SCCCCCHHHHHHHH-----------HHHHHHHHTTCCCSSCCTTC
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhhhHHHhhhHH-HHHHHHHHHHHHHH-----------HhhhHHhhhhcchhhhcccc
Confidence 99999999888642 111222222221111100 00111111111111 1222333332 233
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHH
Q 000124 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM 685 (2138)
Q Consensus 606 ~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv 685 (2138)
..++..+..++..++...... ... ..++.+.+.++++++.+|+.|..+|..++.+.....-.-.-..+++.++
T Consensus 341 ~~~~~~a~~~l~~l~~~~~~~-~~~------~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~ 413 (458)
T d1ibrb_ 341 WNPCKAAGVCLMLLATCCEDD-IVP------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 413 (458)
T ss_dssp CSHHHHHHHHHHHHHHHTTTT-HHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhccHh-hhh------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Confidence 356777888888776543321 221 2466777788889999999999999999863221111112246789999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcC
Q 000124 686 RLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 686 ~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
..+++.++.+|..|+++|++++.
T Consensus 414 ~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 414 ELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=7.5e-05 Score=88.37 Aligned_cols=380 Identities=15% Similarity=0.077 Sum_probs=228.0
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCCh-hHHHHHH--
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE-DIRACVE-- 555 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~sd-~~r~~I~-- 555 (2138)
+-+-++|..+|..|-..|..+...+.. +.+..|..++.+. +..+|..|+-.|.|.-.... ..+....
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~ 78 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 78 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhh
Confidence 334477889999999999888763211 3466677777654 57788888888877654322 1111110
Q ss_pred --------HcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHHHhcCCCc--chHHHHHHHHHHHH
Q 000124 556 --------SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLALLLGDSP--SSKAHVIKVLGHVL 620 (2138)
Q Consensus 556 --------e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-----e~~aI~~Li~LL~~~d~--~V~~~A~~AL~~La 620 (2138)
.......++..+.+.++. ++.++.++..++... -.+.++.+...+.+... ..+..+..+++.+.
T Consensus 79 ~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 79 WLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 111223455656565543 334555666555442 24678888888876543 34556677777665
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhh-hhhhCCCHHHHHHHhccCCHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICG-SLATDEIVNPCMRLLTSNTQMVAT 697 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~-~Ive~GaV~~Lv~LL~dgs~~Vk~ 697 (2138)
........ .. .....++.++..+.++ +.+++..+..++.++......... ........+.+..++.+.+++++.
T Consensus 158 ~~~~~~~~-~~--~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (458)
T d1ibrb_ 158 QDIDPEQL-QD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV 234 (458)
T ss_dssp HHSCGGGT-GG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhccchhh-hh--hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence 43222111 00 1122467777777654 688999999999998764332211 222234556677788889999999
Q ss_pred HHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHH-------------------
Q 000124 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIA------------------- 758 (2138)
Q Consensus 698 ~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r------------------- 758 (2138)
.+..++..+....+. ..... ........+....++.+++++..|+..+..++......
T Consensus 235 ~~~~~l~~i~~~~~~--~~~~~-l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
T d1ibrb_ 235 AALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 311 (458)
T ss_dssp HHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHhHH--HHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 999999999763332 11111 11112233455667788999999999888875311100
Q ss_pred --HHHHhcCcHHHHHHHHhC-------CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000124 759 --AEVLLEDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2138)
Q Consensus 759 --~~Ii~~g~L~~LV~LL~~-------~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~ 829 (2138)
.....+...+.+...+.+ ++..++..|..++..++...+ +.+. ....+.+...+++.+ ...+
T Consensus 312 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~-----~~l~~~i~~~l~s~~--~~~r 382 (458)
T d1ibrb_ 312 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-----PHVLPFIKEHIKNPD--WRYR 382 (458)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-----HHHHHHHHHHTTCSS--HHHH
T ss_pred HHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc--Hhhh-----hHHHHHHHHHhcCCC--HHHH
Confidence 001112233444444322 233588899999998887542 2221 234555666665544 3458
Q ss_pred HHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhcc
Q 000124 830 ADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2138)
Q Consensus 830 ~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~ 891 (2138)
..|+.+|+.++..... ..+. .-.+.-++.+..++.++++.+|..|..+|++++..
T Consensus 383 ~aal~~l~~i~~~~~~-~~~~------~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEP-SQLK------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHTSSSSCT-TTTC------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH-hHHH------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 8899999888742111 1111 11345688899999999999999999999998753
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.70 E-value=2.5e-06 Score=84.37 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=87.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCCh
Q 000124 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV 726 (2138)
Q Consensus 647 ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V 726 (2138)
+++++.+|..|+.+|.++. ...+++|++.|.+.++.+|..|+++|+++.. .+.+
T Consensus 2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------------~~~~ 55 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------ERAV 55 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------HHHH
T ss_pred CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------hhhH
Confidence 4456667777776665542 2467899999999999999999999988752 1267
Q ss_pred hhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 727 KPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 727 ~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
+.|+.+|+++++.||..|+.+|+.+. .++.++.|..++.+.++.+|+.|..+|.
T Consensus 56 ~~L~~~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 56 EPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHhhhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999999999999999999999764 3457888899999999999999998873
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.62 E-value=3.5e-06 Score=83.30 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=89.6
Q ss_pred hcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcch
Q 000124 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562 (2138)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~a 562 (2138)
|+++|+.+|..|+.+|+.+.. .++++|+..|+++++.+|..++.+|+++.. .++++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 456778888888888766542 367889999999999999999999988753 335788
Q ss_pred hhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHH
Q 000124 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL 616 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL 616 (2138)
|+.++++.++.++..++++|+.+. +.+.++.|.++++++++.++..+..+|
T Consensus 58 L~~~l~d~~~~VR~~a~~aL~~i~---~~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 58 LIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHhhhccchhHHHHHHHHHHHHhC---ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999885 457789999999999999988876665
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.027 Score=67.96 Aligned_cols=315 Identities=13% Similarity=0.088 Sum_probs=184.4
Q ss_pred chHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHH---hhhch--hHHHHHHHhcCCchhhHHHHHHHHHHHhhcC
Q 000124 432 EAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA---IGKRE--GIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2138)
Q Consensus 432 ~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~---I~e~g--gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s 505 (2138)
.++..++.++.. +.+++.++....+..+-..++..... ..+.. --+++..++..++.-+...+...+..++...
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 356677777765 45667777776666666553322111 11111 2245566666667667777777777777643
Q ss_pred chhHHHHHhc-CCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH--HcCCcchhhhcccc-------------
Q 000124 506 DDSKWAITAA-GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE--SAGAVPAFLWLLKS------------- 569 (2138)
Q Consensus 506 ~e~r~~I~~a-GaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~--e~GaI~aLv~LLkS------------- 569 (2138)
.......-.. .....+-.+..+++.+.+..++..|..+.. .+..|..+. +...++.|+.+++.
T Consensus 154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~ 232 (477)
T d1ho8a_ 154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 232 (477)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence 3322211111 112222223355677888888888888876 466676653 23445555555432
Q ss_pred ----CChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhh--cchHHHHhhh
Q 000124 570 ----GGPKGQDASAMALTKLIRAAD---------SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMA--LQEDLVQKGS 633 (2138)
Q Consensus 570 ----~~~evq~~Aa~AL~nLs~~~e---------~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~--~~~d~v~~~l 633 (2138)
.+.++++.+.-+++-|+..++ .+.++.++++++.. .+.+-+.+..++.++.... ..+......+
T Consensus 233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 312 (477)
T d1ho8a_ 233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 312 (477)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 124789999999999987532 24578888888743 3445455555666654321 1112222233
Q ss_pred cccchhhHHHHhhcCC---CHHHHHHHHHHHHHH--------hhc--------------Chhhh---------hhhhhC-
Q 000124 634 AANKGLRSLVQVLNSS---NEENQEYAASVLADL--------FSM--------------RQDIC---------GSLATD- 678 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~---s~evre~Aa~ALanL--------~s~--------------~~e~r---------~~Ive~- 678 (2138)
...++++. +..|+.. ++++.+..- .|..+ ++. +|.++ ..+.+.
T Consensus 313 v~~~~l~~-l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~ 390 (477)
T d1ho8a_ 313 LLGNALPT-VQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 390 (477)
T ss_dssp HHHCHHHH-HHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred HHcchhHH-HHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccc
Confidence 44455544 4444432 666555322 22211 110 23333 122222
Q ss_pred -CCHHHHHHHhcc----------CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000124 679 -EIVNPCMRLLTS----------NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2138)
Q Consensus 679 -GaV~~Lv~LL~d----------gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~A 747 (2138)
..++.|+++|.. .++.+..-|+.=++.+.+..|. -|..+.+-|+=..++.++.+++++|+.+|+.|
T Consensus 391 ~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~---gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 467 (477)
T d1ho8a_ 391 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE---SIDVLDKTGGKADIMELLNHSDSRVKYEALKA 467 (477)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT---HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc---hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 358889999862 3456777788889999886554 56667778888889999999999999999999
Q ss_pred HHHhh
Q 000124 748 LANLL 752 (2138)
Q Consensus 748 LaNLa 752 (2138)
+.-|-
T Consensus 468 vQklm 472 (477)
T d1ho8a_ 468 TQAII 472 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98663
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.065 Score=64.53 Aligned_cols=352 Identities=11% Similarity=0.043 Sum_probs=199.4
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhHHHHH----hcC--ChHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 000124 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVL----LGG--CIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2138)
Q Consensus 84 GgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~~r~~v~----~~G--~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2138)
.++..++.+|.. ..+++..+.+.++..|..++..+..+. ... .-+++..+|..++.-+...+...+..++..+
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 368899999976 678999999999977765544332222 112 1345566776677778888888888888754
Q ss_pred CCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH-HhCcHHHHHHhhcc--------
Q 000124 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIVGLLSS-------- 227 (2138)
Q Consensus 157 ~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~-e~GGI~~Lv~lL~s-------- 227 (2138)
.. .....+.... .. .+...+.... +.....-+.++|..+...++-|..... +...++.++..|..
T Consensus 154 ~~-~~~~~e~l~~--~~-~~l~~l~~~~--~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 154 LH-NVKLVEKLLK--NN-NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp TC-CHHHHHHHHH--CH-HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred cc-ccchHHHHHH--hh-HHHHHhhccc--ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence 31 2222333333 12 2333332222 334666778888888877655532222 23346666655543
Q ss_pred ---------CCHHHHHHHHHHHHHHHhhcCCCcchhhcc--chHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCH-----
Q 000124 228 ---------DNAAAQSNAASLLARLMLAFGDSIPTVIDS--GAVKALVQLVGQNNDISVRASAADALEALSSKSI----- 291 (2138)
Q Consensus 228 ---------~s~evq~~A~~aL~nLs~~~~e~r~~l~~~--GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~----- 291 (2138)
...+.+..++-+++-|+. +++....+... +.++.++.++.......+-+.+..++.|+.....
T Consensus 228 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 306 (477)
T d1ho8a_ 228 RIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 306 (477)
T ss_dssp --------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred hhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 123678889999999984 33333444443 4588899988766667888888899999976411
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCc-hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000124 292 KAKKAVVAADGVPVLIGAIVAPS-KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2138)
Q Consensus 292 e~Rk~i~e~ggL~~LI~LL~s~s-~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~ 370 (2138)
.....+...+++ .++..+.... .+ +.+ ...|..+ .+.|. .
T Consensus 307 ~~~~~~v~~~~l-~~l~~L~~r~~~D-------edl----~edl~~L-----------~~~L~-------------~--- 347 (477)
T d1ho8a_ 307 VIKQLLLLGNAL-PTVQSLSERKYSD-------EEL----RQDISNL-----------KEILE-------------N--- 347 (477)
T ss_dssp HHHHHHHHHCHH-HHHHHHHSSCCSS-------HHH----HHHHHHH-----------HHHHH-------------H---
T ss_pred HHHHHHHHcchh-HHHHHHhcCCCCC-------HHH----HHHHHHH-----------HHHHH-------------H---
Confidence 122233434444 3344343311 00 000 0111111 11000 0
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHH----Hhhhc--hHHHHHHHHc--
Q 000124 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW----VSHAE--AKKVLIGLIT-- 442 (2138)
Q Consensus 371 ~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~----L~e~~--gI~~LV~LL~-- 442 (2138)
.+. . -...+++...+....-.. +..-.++..|+. +.+.+ .++.|+.++.
T Consensus 348 ---~~k--~--------lTsfd~Y~~Ev~Sg~L~W----------SP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~ 404 (477)
T d1ho8a_ 348 ---EYQ--E--------LTSFDEYVAELDSKLLCW----------SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 404 (477)
T ss_dssp ---HHH--T--------CCHHHHHHHHHHHTCCCC----------CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred ---HHH--h--------cCcHHHHHHHHhcCCCCC----------CCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhc
Confidence 000 0 001112222111110000 000011122222 22222 3677888885
Q ss_pred --------cCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc
Q 000124 443 --------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2138)
Q Consensus 443 --------sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~ 504 (2138)
+.++.+...|+.-++.++..-|..+..+.+.|+=..+++++.++|+++|..|+.++..+-.+
T Consensus 405 ~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 405 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34567778888999999999887777777777777899999999999999999999888654
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.65 E-value=0.0006 Score=76.30 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc
Q 000124 558 GAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G 637 (2138)
-.+..|..+++++++.++..++..|. .+.|..|+.+.+..|+..+...+
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp----------~~~L~~L~~D~d~~VR~~aa~~l--------------------- 114 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYRLP----------REQLSALMFDEDREVRITVADRL--------------------- 114 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTTSC----------SGGGGGTTTCSCHHHHHHHHHHS---------------------
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHcC----------HHHHHHHhcCCChhHHHHHHhcc---------------------
Confidence 45677888888888999888876542 23466777777777766543321
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
....|..+++++++.+|..++.. +. .+.|..++++.++.++..++.. +.
T Consensus 115 ~~~~L~~Ll~D~d~~VR~~aa~~---~~---------------~~~L~~L~~D~d~~VR~~aA~~---~~---------- 163 (233)
T d1lrva_ 115 PLEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---LP---------- 163 (233)
T ss_dssp CTGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---SC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHhc---cc---------------hhHHHHHhcCCCHHHHHHHHHh---cC----------
Confidence 13456667777788888776643 11 1234455666677777655531 11
Q ss_pred hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHH-----HhhCCch--HHHHHHhcCcHHHHHHHHhCCCHHHHHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALA-----NLLSDPD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALa-----NLa~~~e--~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~ 787 (2138)
.+.|..++++.++.|+..++..|. .|..++. +|..+.+. ..+.++..|.+.+++||+.|+.
T Consensus 164 --------~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 164 --------EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp --------GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred --------HHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHHH
Confidence 133444455555555555443321 2222222 22222221 2345666778888888888764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.94 E-value=0.0048 Score=68.79 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=62.0
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHH-----HHHhcCC-hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVL-----WILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL-----~nLs~~s-d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e 590 (2138)
.+..|..+++++++.+|..++..| ..|..+. ...|..+...-..+.|..+++++++.++..++..+
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~-------- 138 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRI-------- 138 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHS--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhcc--------
Confidence 456677788888888888887543 1222221 12333333333445556666666666666555421
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHH
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~A 660 (2138)
..+.|..++++.+..|+..+.+ .-+.+.|..++++.++.+|..++..
T Consensus 139 --~~~~L~~L~~D~d~~VR~~aA~---------------------~~~~~~L~~l~~D~d~~VR~~aa~~ 185 (233)
T d1lrva_ 139 --PPGRLFRFMRDEDRQVRKLVAK---------------------RLPEESLGLMTQDPEPEVRRIVASR 185 (233)
T ss_dssp --CGGGGGGTTTCSCHHHHHHHHH---------------------HSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred --chhHHHHHhcCCCHHHHHHHHH---------------------hcCHHHHHHHccCCCHHHHHHHHHh
Confidence 1123444555555555543321 1134556677777777777777654
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.77 E-value=0.77 Score=53.04 Aligned_cols=201 Identities=13% Similarity=0.111 Sum_probs=116.9
Q ss_pred cchhhhccccCChhHHHHHHHHHHHHHHh--hchhhHHHHHHHhcC----CCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 560 VPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSATINQLLALLLG----DSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 560 I~aLv~LLkS~~~evq~~Aa~AL~nLs~~--~e~~aI~~Li~LL~~----~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
+..+.+++.++.-... .+...|..+... ++.+.+..+..++++ +++.++..+.=++|.+.+..-.. ..-
T Consensus 90 ~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~----~~~ 164 (336)
T d1lsha1 90 LLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TVS 164 (336)
T ss_dssp HHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CSS
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC----CCC
Confidence 3334444444433222 223333344333 345566666666654 34445555555666655321000 000
Q ss_pred cccchhhHHHH----hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHHH
Q 000124 634 AANKGLRSLVQ----VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSARA 702 (2138)
Q Consensus 634 ~~~GaI~aLV~----LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-------gs~~Vk~~AA~A 702 (2138)
.....++.+.. ....++.+.+..+..+|+|+.. .+.++.|.+++.+ .+..+|..|.+|
T Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~A 233 (336)
T d1lsha1 165 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMA 233 (336)
T ss_dssp CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 11223334443 3445677778888999999875 4566778877753 256899999999
Q ss_pred HHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh-CCCH
Q 000124 703 LGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTS 779 (2138)
Q Consensus 703 LanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~-~~~~ 779 (2138)
|.++....+. . +.+.+..+..+ .+.++|..|..+|.. ++|.. ..+..+...+. +.+.
T Consensus 234 lr~~~~~~p~--~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~~-------~~l~~i~~~l~~E~~~ 293 (336)
T d1lsha1 234 LRNIAKRDPR--K---------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPNL 293 (336)
T ss_dssp TTTGGGTCHH--H---------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSCH
T ss_pred HHHhhhcCcH--H---------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCCH-------HHHHHHHHHHHhCcHH
Confidence 9998763221 1 23445566554 568999988888854 33431 24556666554 5688
Q ss_pred HHHHHHHHHHHHhhhcC
Q 000124 780 EGKKNASRALHQLLKHF 796 (2138)
Q Consensus 780 ~Vr~~Aa~AL~nL~~~~ 796 (2138)
+|+......|.++....
T Consensus 294 QV~sfv~S~l~~la~s~ 310 (336)
T d1lsha1 294 QVASFVYSQMRSLSRSS 310 (336)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999988753
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=3.6 Score=46.63 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=144.8
Q ss_pred hhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcC
Q 000124 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLEAG--SQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 471 ~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~ 546 (2138)
...+.+..|+..|..-+.+.|+.++.+..++-+...+.+...++ ..- |.++..|-.+ ++++--.+-..|+....
T Consensus 66 ~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~-~eil~~L~~gye~~eiAl~~G~mLREcik- 143 (330)
T d1upka_ 66 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIR- 143 (330)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHT-
T ss_pred HHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC-HHHHHHHHhhcCCcchhhhhhHHHHHHHh-
Confidence 34566778888888889999999999999998865555433221 111 3333333333 56666666667777765
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHHH
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIKV 615 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~~d~~V~~~A~~A 615 (2138)
.+...+.+.....+..+++....++-++...|..++..+..... ........+||.+++--.+.++...
T Consensus 144 ~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL 223 (330)
T d1upka_ 144 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 223 (330)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 56777777788889999999999999999999888887764421 2345667889999999999999999
Q ss_pred HHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 616 LGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 616 L~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
|+.+.....+.....+-+.....+..+..++++.+..++..|..++.-...
T Consensus 224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 999886666655555556677789999999999999999999988776665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=90.71 E-value=0.53 Score=54.45 Aligned_cols=208 Identities=17% Similarity=0.158 Sum_probs=126.2
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCC
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~ 710 (2138)
...++..+.+++.++.-...+ |...|..+....... ...+..+..++.+ +++.++..+..+++++....
T Consensus 86 T~~a~~~i~~~I~~~~ls~~e-a~~~l~~l~~~~~Pt------~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~ 158 (336)
T d1lsha1 86 TSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY 158 (336)
T ss_dssp SHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHhccCCCC------HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence 444677788888766433222 344455554421111 2345666777764 57788999999998887510
Q ss_pred Cc-ccchhhhHHhcCChhhHHhhh----hcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC-------C
Q 000124 711 KT-KTTNKMSYIAEGDVKPLIKLA----KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-------T 778 (2138)
Q Consensus 711 ~~-~d~~r~~I~~~G~V~~Lv~LL----~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~-------~ 778 (2138)
.. .+... ...++.+.+.+ ..++.+.+..++.+|+|+.. ++.++.|..++.+. .
T Consensus 159 c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~ 223 (336)
T d1lsha1 159 CANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYS 223 (336)
T ss_dssp HTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSC
T ss_pred hcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhccccccccccc
Confidence 00 00111 22445555544 45677777789999999962 34678888877532 5
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccccccc
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2138)
..+|..|+++|.++....| ..+...+..++.+..++...|..|..+|=. +.+
T Consensus 224 ~~vR~aAi~Alr~~~~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t~P---------------- 275 (336)
T d1lsha1 224 TRVQAEAIMALRNIAKRDP-----------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE-SKP---------------- 275 (336)
T ss_dssp HHHHHHHHHTTTTGGGTCH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-TCC----------------
T ss_pred HHHHHHHHHHHHHhhhcCc-----------HHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC----------------
Confidence 7899999999998876531 234456777887777777778887765422 111
Q ss_pred CCCchHHHHHhh-hcCChHHHHHHHHHHHHhhccC
Q 000124 859 VPSSIEPLVCCL-AEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 859 ~~~~L~~Lv~ll-~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
....+..+...+ .+++..|.....-.|.++....
T Consensus 276 ~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~ 310 (336)
T d1lsha1 276 SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 310 (336)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence 011344555544 3556667777777777766543
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.94 E-value=41 Score=41.99 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhccC------------chhH
Q 000124 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKD------------EDLR 118 (2138)
Q Consensus 53 ~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls~~------------e~~r 118 (2138)
.+++.+..|-..|..+... .|....|+.++.+. +..+|..|+-.|++.... ++.|
T Consensus 15 ~~~~~~k~Ae~~L~~~~~~-----------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k 83 (959)
T d1wa5c_ 15 VIASTAKTSERNLRQLETQ-----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (959)
T ss_dssp TSGGGHHHHHHHHHHHHTS-----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred CChHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHH
Confidence 4556788888888877544 47888899988765 457888888888776421 2333
Q ss_pred HHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHH
Q 000124 119 LKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGAL 198 (2138)
Q Consensus 119 ~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL 198 (2138)
..+. ..++..|.+.+..+|...+.++..++....+.+- .+.++.|++.+.+++ ......++.+|
T Consensus 84 ~~Ik-----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W--------p~ll~~l~~~l~s~~---~~~~~~~L~~l 147 (959)
T d1wa5c_ 84 ELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--------PTLLSDLASRLSNDD---MVTNKGVLTVA 147 (959)
T ss_dssp HHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC--------TTHHHHHHTTCCSSC---TTHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc--------HHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 3333 4566777777889999999999998863111010 258899999987654 33566788888
Q ss_pred HHHhcC
Q 000124 199 RNLCGD 204 (2138)
Q Consensus 199 ~nLcs~ 204 (2138)
..++..
T Consensus 148 ~~i~k~ 153 (959)
T d1wa5c_ 148 HSIFKR 153 (959)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 888864
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=15 Score=41.31 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=141.6
Q ss_pred HHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhH-----HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000124 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWE-----AIGKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2138)
Q Consensus 427 ~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~-----~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2138)
.+...+.+..|+..+..=+-+.++.++..+.++-+...+.+. .......+..|+..++ ++++-..+-..|+.+
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREc 141 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 141 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHH
Confidence 445567778888888888889999999998888775443332 2223344555555554 455666666777777
Q ss_pred hhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC-hhHHHHHHH--cCCcchhhhccccCChhHHHHH
Q 000124 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVES--AGAVPAFLWLLKSGGPKGQDAS 578 (2138)
Q Consensus 502 a~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s-d~~r~~I~e--~GaI~aLv~LLkS~~~evq~~A 578 (2138)
..+ +.....+.....+..+.+....++-++-..|..++..|-..+ ....+.+.. .......-+++.+++--+++++
T Consensus 142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 773 444555666677888888888999999999998888875433 333333332 1233445578899999999999
Q ss_pred HHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 579 AMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 579 a~AL~nLs~~~-----------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
...|+.+..+. +.+-+..++.||++.+..++..+-+....+......+..+...
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~I 285 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDI 285 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHH
Confidence 99999997653 2445678999999999999999988888776554444444444
|