Citrus Sinensis ID: 000169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1953 | 2.2.26 [Sep-21-2011] | |||||||
| Q6EVK6 | 2193 | ATP-dependent helicase BR | yes | no | 0.940 | 0.837 | 0.689 | 0.0 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | yes | no | 0.374 | 0.435 | 0.364 | 1e-145 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.290 | 0.346 | 0.424 | 1e-140 | |
| Q9UTN6 | 1199 | Chromatin structure-remod | no | no | 0.371 | 0.605 | 0.386 | 1e-138 | |
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.277 | 0.343 | 0.440 | 1e-135 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.277 | 0.340 | 0.444 | 1e-135 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.291 | 0.354 | 0.427 | 1e-135 | |
| Q8K1P7 | 1613 | Transcription activator B | yes | no | 0.291 | 0.353 | 0.427 | 1e-135 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.291 | 0.346 | 0.411 | 1e-135 | |
| Q3TKT4 | 1613 | Transcription activator B | no | no | 0.291 | 0.353 | 0.427 | 1e-134 |
| >sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1 | Back alignment and function desciption |
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Score = 2415 bits (6259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1308/1898 (68%), Positives = 1494/1898 (78%), Gaps = 61/1898 (3%)
Query: 59 RKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQ 118
R D NE + AYQ G + G+MGGGNFAS PGSMQ PQQSR FF+ QQ Q+ + +Q
Sbjct: 64 RNSDTNENMFAYQPGGVQGMMGGGNFASSPGSMQMPQQSRNFFESPQQQQQQQQQGSSTQ 123
Query: 119 GVEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPAS-GKDQDMRMGNLKMQE 177
+ Q NP+ QAY+Q+A+QAQ + A QQA++GM+G +S GKDQD RMG L MQ+
Sbjct: 124 EGQ-QNFNPMQQAYIQFAMQAQHQKAQ-----QQARMGMVGSSSVGKDQDARMGMLNMQD 177
Query: 178 LISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANI 237
L ++Q QASSSK S +QF RGE+Q E QQ ++ K P+ QQ GQ M N+
Sbjct: 178 L---NPSSQPQASSSKPSGDQFARGERQTESSSQQRNETKSHPQ---QQVGTGQLMPGNM 231
Query: 238 IRPMQAAQHQQSIQNAAGNQLAMAAQ---LQAWALERNIDLSQPANASLIAQLIPIMQSR 294
IRPMQA Q QQ + N NQLA A Q +QAWA ERNIDLS PANAS Q+ I+Q+R
Sbjct: 232 IRPMQAPQAQQLVNNMGNNQLAFAQQWQAMQAWARERNIDLSHPANAS---QMAHILQAR 288
Query: 295 IVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPTVSP 354
+ A KA E N+ + S +P+S Q +S + GENSPHANS+SD+SGQSGSAKAR +S
Sbjct: 289 MAAQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALST 348
Query: 355 SPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGV 414
ST+S +VN N FS GR+N + R V NG+P +P QTS N TP +
Sbjct: 349 GSFASTSSPRMVNPAMN----PFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVL 404
Query: 415 DQPLPVKNSSGP-ENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQRLG 473
DQ K S GP E+ QMQ RQLN +P PS G +N+ S Q G TQ QQR G
Sbjct: 405 DQNASTKKSLGPAEHLQMQQPRQLNTPTPNLVAPSDTGPLSNS-SLQSGQGTQQAQQRSG 463
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDR 533
FTK QLHVLKAQILAFRRLKKGEG+LP ELL+AI PP LELQ Q+Q PA QDR
Sbjct: 464 FTKQQLHVLKAQILAFRRLKKGEGSLPPELLQAISPPPLELQ---TQRQISPAIGKVQDR 520
Query: 534 VSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV-GQGMSAVTKEP 592
S K EDQ R LE GK++QA +SSN KEE GD + A++ Q + KE
Sbjct: 521 SSDKTGEDQARSLEC-GKESQAAASSNGPIFSKEEDNVGDTEVALTTGHSQLFQNLGKEA 579
Query: 593 APVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKP 652
V KEEQQ V VKSDQ + + + SD AD+GK+VA D Q K P
Sbjct: 580 TSTDVATKEEQQTDVFPVKSDQGADSSTQKNPR-SDSTADKGKAVA-----SDGSQSKVP 633
Query: 653 AQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEE 712
QA + PKD +ARKY+GPLFDFPFFTRK DS GS A N++NNLTLAYD+KDL+ EE
Sbjct: 634 PQANSPQPPKDTASARKYYGPLFDFPFFTRKLDSYGS-ATANANNNLTLAYDIKDLICEE 692
Query: 713 GLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQ 772
G E L KKR+++LKKI+G+LA NLERKRIRPDLVLRLQIE+KKLRL DLQSR+R+EVD+Q
Sbjct: 693 GAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQ 752
Query: 773 QQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIR 832
QQEIM+MPDR YRKFVRLCERQR+E+ RQV +QKA+REKQLK+I QWRKKLLEAHWAIR
Sbjct: 753 QQEIMSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIR 812
Query: 833 DARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAA 892
DARTARNRGVAKYHE++LREFSKRKDD RNKRMEALKNNDVERYREMLLEQQT++PGDAA
Sbjct: 813 DARTARNRGVAKYHEKMLREFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAA 872
Query: 893 ERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAAC 952
ERYAVLSSFLTQTE+YL+KLG KITA KNQQEVEEAANAAA AARLQGLSEEEVR+AA C
Sbjct: 873 ERYAVLSSFLTQTEDYLHKLGGKITATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATC 932
Query: 953 AGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWM 1012
A EEV+IRNRF EMNAP++ SSVNKYY+LAHAVNE V+RQPSML+AGTLRDYQ+VGLQWM
Sbjct: 933 AREEVVIRNRFTEMNAPKENSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWM 992
Query: 1013 LSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072
LSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH W
Sbjct: 993 LSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTW 1052
Query: 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132
LPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ
Sbjct: 1053 LPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1112
Query: 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192
RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP+VFDNRKAFHDWF+Q
Sbjct: 1113 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQ 1172
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
PFQKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KVS+VLRCRM
Sbjct: 1173 PFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRM 1232
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312
SAIQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK CNHPLLNY
Sbjct: 1233 SAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNY 1292
Query: 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372
PYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LVYR
Sbjct: 1293 PYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYR 1352
Query: 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1432
RIDGTTSLEDRESAIVDFN D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDPDPNPKNEE
Sbjct: 1353 RIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEE 1412
Query: 1433 QAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEG 1492
QAVARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKDRYIGSIEG
Sbjct: 1413 QAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEG 1472
Query: 1493 LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVN 1552
LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSL EVN
Sbjct: 1473 LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVN 1532
Query: 1553 RMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILF 1612
RMIARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSKKPSKN+L
Sbjct: 1533 RMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLS 1592
Query: 1613 GSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGE 1671
SN+ V G ERKRG PK KK NYKE++D+I YSE SS+ERN EEEG+I +
Sbjct: 1593 SSNLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQ 1651
Query: 1672 FEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRR 1731
F+DDE +GA+G +NK + + + PVC GYDY S + + N ++AGSSGSS S R
Sbjct: 1652 FDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHR 1709
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRD 1791
++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRD
Sbjct: 1710 SKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRD 1769
Query: 1792 EGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLR 1851
EG++EQVLQP IKRKRSIR+RPR T ER + ++ P + P Q+D Y ++LR
Sbjct: 1770 EGDEEQVLQPTIKRKRSIRLRPRQTAERVD---GSEMP------AAQPLQVDRSYRSKLR 1820
Query: 1852 TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR-ASLKTGRLNCMPGHTEDA 1910
T + +H SS R++P++K+A+ K +S K+GRLN ED
Sbjct: 1821 TVVD--SHSSRQD-----QSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDN 1873
Query: 1911 ADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTVSL 1948
A+ +E+WDG + SSN A+MS +IQ+R C + +
Sbjct: 1874 AEASRETWDG--TSPISSSNAGARMSHIIQKR-CKIVI 1908
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ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 307/843 (36%), Positives = 462/843 (54%), Gaps = 112/843 (13%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVE------LMRQVQT 804
IE + LRLL+ Q LR+ ++ ++ R R +RQ ++ + + Q
Sbjct: 646 IELRCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAEKQK 705
Query: 805 SQKAMREKQ-----LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDD 859
++ AMR+K+ L+SI RK ++ A+T R + + +H + +E KR +
Sbjct: 706 TEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRIER 765
Query: 860 DRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAA 919
+R++AL+ +D Y ++L D A+ + + L QT++YL L +
Sbjct: 766 SARQRLQALRADDEAAYLQLL---------DKAKDTRI-THLLKQTDQYLENLTRAVRIQ 815
Query: 920 KNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYY 979
++ + + +A L+ EE ++ Y+
Sbjct: 816 QSNIHSGNTSGKGSNSAELEAPISEEDKNL---------------------------DYF 848
Query: 980 SLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039
+AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGILADEMGLGKT+Q +A
Sbjct: 849 KVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAF 907
Query: 1040 IAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099
I YL+E K GP LIIVP + L NW E KW PSV I Y G R L SQ + +
Sbjct: 908 ITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQ-IRSS 966
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTG 1158
FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L L Y Q RL+LTG
Sbjct: 967 NFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTG 1026
Query: 1159 TPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218
TPLQN+L ELW+LLN +LP++F++ K+F +WF+ PF G D L E+ ++II
Sbjct: 1027 TPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---GQDKIGLNEEEALLIIK 1083
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
RLH++L PF+ RR +DVE LP KV V++C +S +Q +Y +K G L VD E K
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKT 1143
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSCGK 1329
+ K L N M+L+K CNHP + F D+ + D L ++ GK
Sbjct: 1144 GI-----------KGLQNTVMQLKKICNHPFI----FEDVERAIDPSGTNVDLLWRAAGK 1188
Query: 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389
+LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R+DG+T +DR S +
Sbjct: 1189 FELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQ 1248
Query: 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
FN SD +IF+LS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV++
Sbjct: 1249 FNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRI 1308
Query: 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509
+ + + +K +E+++ + QYK+D+ +V
Sbjct: 1309 LRL--ITEK----------------SIEENILSR---------------AQYKLDLDGKV 1335
Query: 1510 INAGRFDQRTTHEERRMTLETLL-HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQM 1568
I AG+FD ++T EER L +LL HD + + + E+N +I+R+++E+ LF ++
Sbjct: 1336 IQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDEELVLFKKL 1395
Query: 1569 DEE 1571
D+E
Sbjct: 1396 DKE 1398
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Helicase. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 272/641 (42%), Positives = 382/641 (59%), Gaps = 73/641 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YYS+AH ++E+V+ Q S++ GTL++YQI GL+W++SLYNN LNGILADEMGLGKT+Q +
Sbjct: 750 YYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 809
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+L+ YLM+ K GP+LIIVP + L NW E KW P+V + Y G+ R RL ++
Sbjct: 810 SLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMR 868
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
A KFNVL+TTYE+++ D++ L+K+ WKY+IIDE RMK+ L + L+ Y RLLL
Sbjct: 869 ATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLL 928
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++I
Sbjct: 929 TGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTG-----EKVELNEEETILI 983
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV +++C MSA+Q +Y +++ G L D ++
Sbjct: 984 IRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEK 1043
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
+ K L N ++LRK CNHP + F + + +
Sbjct: 1044 GKH-------GKGGAKALMNTIVQLRKLCNHPFM----FQHIEEKYCDHTGGHGVVSGPD 1092
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L + GK +LDRIL KL+ T HRVLLF MT+ + I+E+YL WRQ Y R+DGTT ED
Sbjct: 1093 LYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAED 1152
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN+ SD F+FLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIG
Sbjct: 1153 RGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIG 1212
Query: 1443 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYK 1502
Q+ EV+V+ + V S+E I +YK
Sbjct: 1213 QRNEVRVLRLMTV--------------------------------NSVEERIL-AAARYK 1239
Query: 1503 IDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1562
++M ++VI AG FDQ++T ER+ L+T+LH ++ +E ++VP + +N MIARSE+E+
Sbjct: 1240 LNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEI 1299
Query: 1563 ELFDQMDEE--------FGWIEEMTRYDQVPKWLRASTKEV 1595
E+F +MD E E + ++P WL EV
Sbjct: 1300 EIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEV 1340
|
Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 327/846 (38%), Positives = 464/846 (54%), Gaps = 120/846 (14%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCER-----QRVELMRQVQTS 805
+E KKLRL+ Q LR +V Q + + + R C R Q L ++
Sbjct: 199 VELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMS---CRRPKLVPQATRLTEVLERQ 255
Query: 806 QKAMREKQLKSISQWRKKLLEAHWAIRDART----AR----NRGVAKYHERILREFSKRK 857
Q++ RE++LK + + AH + RT AR NR V YH I +E +R
Sbjct: 256 QRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRA 315
Query: 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKIT 917
+ + +R++ALK ND E Y +++ D A+ + + L QT+ YL
Sbjct: 316 ERNAKQRLQALKENDEEAYLKLI---------DQAKDTRI-THLLRQTDHYL-------- 357
Query: 918 AAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNK 977
++ AAA ++Q A +E M R MN P D ++
Sbjct: 358 ------------DSLAAAVKVQQ------SQFGESAYDEDMDRR----MN-PEDDRKID- 393
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AH + E V QPS+L G L++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 394 YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTI 453
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+LI +L+E K GP L+IVP + L NW E +W PS+ I Y G R L Q V
Sbjct: 454 SLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQ-VR 512
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RLLL 1156
F VL+TTYE+I+ DR LS++ W Y+IIDE RMK+ +S L L Y R RL+L
Sbjct: 513 HSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLIL 572
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+L ELW+LLN +LP +F++ K+F +WF+ PF G D L E+ +++
Sbjct: 573 TGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTG---GQDKMELTEEESLLV 629
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR +DVE LP KV V+RC+MS +Q +Y +K G L V ED
Sbjct: 630 IRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYV--EDA 687
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSC 1327
KR K I K L N M+L+K CNHP + F D+ + D L +
Sbjct: 688 KR--GKTGI------KGLQNTVMQLKKICNHPFV----FEDVERSIDPTGFNYDMLWRVS 735
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK +LDRIL KL R+GHR+L+F MT++++I+E+YL +RQ Y R+DG+T +DR +
Sbjct: 736 GKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLL 795
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN ++ +FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV
Sbjct: 796 GVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEV 855
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++ + + +K +E+++ + QYK+D+
Sbjct: 856 RIYRL--ITEK----------------SVEENILAR---------------AQYKLDIDG 882
Query: 1508 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP-SLQEVNRMIARSEDEVELFD 1566
+VI AG+FD ++T EER L +LL +E +E E+N ++AR +DE+ LF
Sbjct: 883 KVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEILARGDDELRLFK 942
Query: 1567 QMDEEF 1572
QM E+
Sbjct: 943 QMTEDL 948
|
Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/608 (44%), Positives = 365/608 (60%), Gaps = 67/608 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 706 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 765
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q +
Sbjct: 766 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LR 824
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
+ KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LL
Sbjct: 825 SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 884
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G D L E+ ++I
Sbjct: 885 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILI 939
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 940 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 999
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
++ KTL N M+LRK CNHP + F + + F
Sbjct: 1000 DKK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGA 1048
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT E
Sbjct: 1049 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1108
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
DR + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRI
Sbjct: 1109 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1168
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ+ EV+V+ + V + E+++ + +Y
Sbjct: 1169 GQQNEVRVLRLCTV------NSVEEKILAAA---------------------------KY 1195
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE 1561
K+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1196 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEE 1254
Query: 1562 VELFDQMD 1569
+LF +MD
Sbjct: 1255 FDLFMRMD 1262
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/608 (44%), Positives = 364/608 (59%), Gaps = 67/608 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 701 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 760
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q +
Sbjct: 761 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LR 819
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
+ KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LL
Sbjct: 820 SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 879
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G D L E+ ++I
Sbjct: 880 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILI 934
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 935 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 994
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
++ KTL N M+LRK CNHP + F + + F
Sbjct: 995 DKK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGA 1043
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT E
Sbjct: 1044 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
DR + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRI
Sbjct: 1104 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1163
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ+ EV+V+ + V+ + E LA +Y
Sbjct: 1164 GQQNEVRVLRL-CTVNSVE----------------EKILAAA----------------KY 1190
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE 1561
K+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1191 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEE 1249
Query: 1562 VELFDQMD 1569
+LF +MD
Sbjct: 1250 FDLFMRMD 1257
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 375/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 720 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 779
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 780 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 838
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 839 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 898
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 899 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 953
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1014 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1062
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1063 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1122
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1123 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1182
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1183 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1210
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1211 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1268
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1269 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1313
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-fOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 375/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1276
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1277 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1321
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/678 (41%), Positives = 379/678 (55%), Gaps = 108/678 (15%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH--------------- 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRHCSTGSGSASFAHTAP 1276
Query: 1544 ------------------DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIE--------E 1577
+VP + VN+MIAR E+E +LF +MD + E
Sbjct: 1277 PPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPR 1336
Query: 1578 MTRYDQVPKWLRASTKEV 1595
+ D++P W+ EV
Sbjct: 1337 LMEEDELPSWIIKDDAEV 1354
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues (By similarity). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 375/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1276
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1277 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1321
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1953 | ||||||
| 359489634 | 2263 | PREDICTED: ATP-dependent helicase BRM-li | 0.991 | 0.855 | 0.792 | 0.0 | |
| 255541636 | 2248 | Chromo domain protein, putative [Ricinus | 0.992 | 0.862 | 0.786 | 0.0 | |
| 147789690 | 2238 | hypothetical protein VITISV_024679 [Viti | 0.976 | 0.852 | 0.779 | 0.0 | |
| 224064045 | 2222 | chromatin remodeling complex subunit [Po | 0.961 | 0.844 | 0.777 | 0.0 | |
| 356560792 | 2229 | PREDICTED: ATP-dependent helicase BRM-li | 0.969 | 0.849 | 0.741 | 0.0 | |
| 449432144 | 2247 | PREDICTED: ATP-dependent helicase BRM-li | 0.989 | 0.859 | 0.741 | 0.0 | |
| 356520394 | 2226 | PREDICTED: ATP-dependent helicase BRM-li | 0.968 | 0.849 | 0.737 | 0.0 | |
| 449480215 | 2251 | PREDICTED: LOW QUALITY PROTEIN: ATP-depe | 0.991 | 0.860 | 0.740 | 0.0 | |
| 356568407 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.955 | 0.839 | 0.727 | 0.0 | |
| 356531981 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.952 | 0.837 | 0.720 | 0.0 |
| >gi|359489634|ref|XP_002276245.2| PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2992 bits (7758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1562/1970 (79%), Positives = 1708/1970 (86%), Gaps = 34/1970 (1%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS SMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSSSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEFERGIQKTPIRSDFAPDRGKAVAPQVGVPD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR QGLSEEE
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQGLSEEE 957
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLRDYQ
Sbjct: 958 VRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLRDYQ 1017
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1018 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1077
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWKY
Sbjct: 1078 KSELHNWLPSVSCIYYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKY 1137
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1138 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1197
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1198 FHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1257
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK C
Sbjct: 1258 IVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKAC 1317
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1318 NHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1377
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IYDPD
Sbjct: 1378 WRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPD 1437
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAGKDR
Sbjct: 1438 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAGKDR 1497
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
YIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1498 YIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1557
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANLSKK
Sbjct: 1558 PSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANLSKK 1617
Query: 1606 PSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSDERN
Sbjct: 1618 PSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSDERN 1675
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
GY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H+++
Sbjct: 1676 GYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKHILD 1735
Query: 1719 EAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH 1777
EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSGDSH
Sbjct: 1736 EAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSGDSH 1795
Query: 1778 MDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1836
MDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RGDSS
Sbjct: 1796 MDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRGDSS 1855
Query: 1837 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K AS K
Sbjct: 1856 QLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHASPK 1915
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
+G+LNCM ED A+H +E WDGK+ N G +M +++QR+ V
Sbjct: 1916 SGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNV 1960
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541636|ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis] gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2988 bits (7746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1539/1957 (78%), Positives = 1701/1957 (86%), Gaps = 18/1957 (0%)
Query: 1 MQSGGG-PSRNRAAS---TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQ 56
MQSGGG PSR A ++S+A+ SSSS+ ++P LGFDS+QQ QHQQ RQ Q Q
Sbjct: 1 MQSGGGGPSRVGPAGRAASTSSAASPSSSSSAASPQLGFDSVQQHHQHQQLGSRQALQHQ 60
Query: 57 ILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNR 116
+LRKP+GNEA+LAYQ G+ G++GG NFA PGSMQ PQQSRKFFD AQQ SQ+ QNR
Sbjct: 61 LLRKPEGNEALLAYQAGAFQGVIGGSNFAPSPGSMQMPQQSRKFFDLAQQQNSSQDGQNR 120
Query: 117 SQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMGNLKMQ 176
+Q VE Q+LNPVHQAY+Q+A Q QQKSA V+QSQQQAK+GMLGPA+GKDQ+MRMGN KMQ
Sbjct: 121 NQAVEQQVLNPVHQAYLQFAFQ-QQKSALVMQSQQQAKMGMLGPATGKDQEMRMGNSKMQ 179
Query: 177 ELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAAN 236
EL S+Q+A+QAQASSSKNSSE F RGEKQ+EQ QQ +Q+ E KPP+Q GQ M AN
Sbjct: 180 ELTSIQAASQAQASSSKNSSENFTRGEKQVEQGQQLAPEQRNEQKPPTQPPGVGQAMPAN 239
Query: 237 IIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQLIPIMQS 293
++RPMQA Q QQSIQN NQLAMAAQLQA WALERNIDLS PANA+L+AQLIP+MQS
Sbjct: 240 VVRPMQAPQAQQSIQNMVNNQLAMAAQLQAMQAWALERNIDLSLPANANLMAQLIPLMQS 299
Query: 294 RIVANHKANESNMGAPSSPVPVS--KQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPT 351
R+ A KANESN GA +SPVPVS K QV SP +A E+SPHANSSSDVSGQSG KAR T
Sbjct: 300 RMAAQQKANESNAGAQASPVPVSVSKHQVASPPVASESSPHANSSSDVSGQSGPPKARQT 359
Query: 352 VSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT 411
V P GS++++ +VN+ N++++QQ + R+NQ P R V +GNG+P +HP Q S NM+
Sbjct: 360 VPSGPFGSSSNSGIVNSANSLAMQQLAFQNRENQAPPRTGVILGNGMPSMHPSQLSANMS 419
Query: 412 PGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQ 470
G DQ +P KN+ + PE QMQ+L+Q+NRSSPQSA S+DG S+N+ SSQG + QM Q
Sbjct: 420 QGGDQNMPAKNAINSPETLQMQHLKQMNRSSPQSAGLSNDGGSSNHNSSQGTPSVQMAQN 479
Query: 471 RLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNN 530
R+GFTK QLHVLKAQILAFRRLKKGEGTLPQELLRAI + + QQQFLPA +N
Sbjct: 480 RVGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAI---APPPLELQLQQQFLPAGGSN 536
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
QDR GKI EDQ +HLESN K++QA+ S N Q+ KEEA AG +K VS K
Sbjct: 537 QDRSGGKILEDQAKHLESNEKNSQAMPSMNGQNAAKEEAVAGVEKPTVSASNIEGPTAAK 596
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVK 650
+P V KEEQQ VKSDQEVE L +T +SD AD+GK+VAPQV DAVQ K
Sbjct: 597 DPTTSVAVRKEEQQTATFPVKSDQEVERSLQKTPVRSDVTADKGKAVAPQVPVSDAVQAK 656
Query: 651 KPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLS 710
KPAQ + A QPKDVG+ARKYHGPLFDFPFFTRKHDS+GS+ M+N++NNL LAYDVKDLL
Sbjct: 657 KPAQTSVAPQPKDVGSARKYHGPLFDFPFFTRKHDSIGSSGMINTNNNLILAYDVKDLLF 716
Query: 711 EEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVD 770
EEGLEVL KKRSENLKKI+G+LAVNLERKRIRPDLVLRLQIE+KKL+LLDLQ+RLRDEVD
Sbjct: 717 EEGLEVLNKKRSENLKKINGLLAVNLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVD 776
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
QQQQEIMAMPDR YRKFVRLCERQR+E RQVQ SQKAMR+KQLKSI QWRKKLLEAHW
Sbjct: 777 QQQQEIMAMPDRPYRKFVRLCERQRMEQARQVQASQKAMRDKQLKSIFQWRKKLLEAHWG 836
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD 890
IRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT+I GD
Sbjct: 837 IRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTNIEGD 896
Query: 891 AAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAA 950
AAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAA AARLQGLSEEEVR AA
Sbjct: 897 AAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAATAARLQGLSEEEVRVAA 956
Query: 951 ACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQ 1010
ACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAVNERV+RQPSMLRAGTLRDYQ+VGLQ
Sbjct: 957 ACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNERVIRQPSMLRAGTLRDYQLVGLQ 1016
Query: 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070
WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH
Sbjct: 1017 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1076
Query: 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1130
WLPSVSCIYYVG+KDQRS+LFSQEV+A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE
Sbjct: 1077 NWLPSVSCIYYVGSKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1136
Query: 1131 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1190
AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF
Sbjct: 1137 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1196
Query: 1191 SQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1250
S+PFQKEGP H+A+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC
Sbjct: 1197 SKPFQKEGPAHDAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1256
Query: 1251 RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
RMSAIQSA+YDWIK+TGTLRVDPEDEKRR QKNPIYQ KVYKTLNNRCMELRK CNHPLL
Sbjct: 1257 RMSAIQSAVYDWIKSTGTLRVDPEDEKRRAQKNPIYQPKVYKTLNNRCMELRKACNHPLL 1316
Query: 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
NYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LV
Sbjct: 1317 NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLV 1376
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN
Sbjct: 1377 YRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1436
Query: 1431 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSI 1490
EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGT+DLEDDLAGKDRY+GSI
Sbjct: 1437 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTIDLEDDLAGKDRYMGSI 1496
Query: 1491 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
E LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH+VPSLQE
Sbjct: 1497 ESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHNVPSLQE 1556
Query: 1551 VNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNI 1610
VNRMIARSEDEVELFDQMDE+ W EEMT YDQVPKWLRAST++VNA IANLSKKPSKNI
Sbjct: 1557 VNRMIARSEDEVELFDQMDEDLDWTEEMTSYDQVPKWLRASTRDVNAAIANLSKKPSKNI 1616
Query: 1611 LFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEI 1669
L+ S++G++S E+ETERKRG PKGKK PNYKEVDD+ GEYSEASSDERNGY EEEGEI
Sbjct: 1617 LYASSVGMESSEVETERKRGRPKGKKSPNYKEVDDDNGEYSEASSDERNGYCAHEEEGEI 1676
Query: 1670 GEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNS 1729
EFEDDE SGAVGAP NKDQSE+DGP C+GGY+Y R S + R+NH++EEAGSSGSSS++
Sbjct: 1677 REFEDDESSGAVGAPPINKDQSEDDGPTCDGGYEYPRASTSARDNHILEEAGSSGSSSDN 1736
Query: 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHD 1789
RR+T+IVSPVS QKFGSLSAL+ARPGS+SK++PDELEEGEIAVSGDSH+DHQQSGSW HD
Sbjct: 1737 RRITRIVSPVSSQKFGSLSALDARPGSISKKLPDELEEGEIAVSGDSHLDHQQSGSWIHD 1796
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
R+EGEDEQVLQPKIKRKRSIR+RPRHT+ERP+E+S + + RGD+ LLPFQ D+KY AQ
Sbjct: 1797 REEGEDEQVLQPKIKRKRSIRLRPRHTMERPDEKSGIE--VQRGDACLLPFQGDHKYQAQ 1854
Query: 1850 LRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTED 1909
LRTD EMK GE N RHDQS+ SSK+RR +PSR+IAN K AS K+ RL+ ED
Sbjct: 1855 LRTDAEMKGFGEPNPSRHDQSD-SSKNRRTIPSRRIANTSKLHASPKSSRLHMQAAPPED 1913
Query: 1910 AADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
AA+H +ESWDGK+ NASGSS +KMSDVIQRR V
Sbjct: 1914 AAEHSRESWDGKVTNASGSSVLGSKMSDVIQRRCKNV 1950
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789690|emb|CAN74059.1| hypothetical protein VITISV_024679 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2917 bits (7563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1538/1973 (77%), Positives = 1683/1973 (85%), Gaps = 65/1973 (3%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS GSMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSGSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEXERGIQKTPIRSDFAPDRGKAVAPQVGVSD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQ---GLS 942
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR Q GLS
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQACFGLS 957
Query: 943 EEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLR 1002
EEEVR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLR
Sbjct: 958 EEEVRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLR 1017
Query: 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062
DYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL
Sbjct: 1018 DYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1077
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVD 1122
VNWK EV A+KFNVLVTTYEFIMYDRSKLSKVD
Sbjct: 1078 VNWK----------------------------EVCAMKFNVLVTTYEFIMYDRSKLSKVD 1109
Query: 1123 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182
WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN
Sbjct: 1110 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1169
Query: 1183 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
RKAFHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP
Sbjct: 1170 RKAFHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1229
Query: 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302
KVSIVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR
Sbjct: 1230 KVSIVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1289
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1362
K CNHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEE
Sbjct: 1290 KACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1349
Query: 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422
YLQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IY
Sbjct: 1350 YLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIY 1409
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482
DPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAG
Sbjct: 1410 DPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAG 1469
Query: 1483 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETV 1542
KDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETV
Sbjct: 1470 KDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETV 1529
Query: 1543 HDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANL 1602
HDVPSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANL
Sbjct: 1530 HDVPSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANL 1589
Query: 1603 SKKPSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSD 1655
SKKPSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSD
Sbjct: 1590 SKKPSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSD 1647
Query: 1656 ERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNH 1715
ERNGY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H
Sbjct: 1648 ERNGYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKH 1707
Query: 1716 VVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG 1774
+++EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSG
Sbjct: 1708 ILDEAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSG 1767
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRG 1833
DSHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RG
Sbjct: 1768 DSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRG 1827
Query: 1834 DSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA 1893
DSS LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K A
Sbjct: 1828 DSSQLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHA 1887
Query: 1894 SLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
S K+G+LNCM ED A+H +E WDGK+ N G +M +++QR+ V
Sbjct: 1888 SPKSGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNV 1935
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064045|ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2916 bits (7559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1494/1922 (77%), Positives = 1641/1922 (85%), Gaps = 45/1922 (2%)
Query: 33 LGFDSLQQQQQHQQQQQRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQ 92
LGFDS+QQQQQ +Q QQQ+LRKP+GNEA+LAYQ G+L G+ G NFAS PGSMQ
Sbjct: 44 LGFDSVQQQQQQPRQAL----QQQLLRKPEGNEALLAYQAGALQGVTVGNNFASSPGSMQ 99
Query: 93 PPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQ 151
PQQSR+FFD A+QH SQ+ QNR+QGVE Q LNP+ QAY+QYA QA QQKSA +QSQQ
Sbjct: 100 TPQQSRQFFDLARQHGSSQDGQNRNQGVEQQALNPMQQAYLQYAFQAAQQKSALAMQSQQ 159
Query: 152 QAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQ 211
QAK+GMLGP +GKDQD+RMGNLKMQEL+SMQ+ANQAQASSSKNSS+ F R EKQ+EQ Q
Sbjct: 160 QAKIGMLGPTAGKDQDIRMGNLKMQELMSMQAANQAQASSSKNSSDHFSRSEKQVEQGQH 219
Query: 212 QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WA 268
SDQ+ E K P Q T GQ M AN+ RPMQA Q +IQN A N LAM AQLQA WA
Sbjct: 220 LASDQRNEQKSPLQPTATGQLMPANVTRPMQAPQ---TIQNMANNHLAMTAQLQAIQAWA 276
Query: 269 LERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGE 328
LERNIDLSQPAN +L+AQLIP MQ+R+ A KANESN GA SS + VSK QV SP+IA E
Sbjct: 277 LERNIDLSQPANVNLMAQLIPFMQARMAAQLKANESNPGAQSSHLLVSKPQVASPSIASE 336
Query: 329 NSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPS 388
+SP ANSSSDVSGQSG+AKAR TV P GST+S +VNN +N+++QQ + H R+NQ P
Sbjct: 337 SSPRANSSSDVSGQSGTAKARQTVPSGPFGSTSSGGMVNNPSNLAMQQQAFHSRENQAPP 396
Query: 389 RQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIP 447
RQ +GNG+P N GVDQ LP KN+ + E SQ + RQLNRSSPQSA P
Sbjct: 397 RQTAVLGNGMPA--------NTGQGVDQILPSKNALNSSETSQARQFRQLNRSSPQSAGP 448
Query: 448 SSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
S++G S N FSSQGG A QM QQR GFTK Q HVLKAQILAFRRLKKGEGTLPQELLRAI
Sbjct: 449 STEGGSGNRFSSQGGPAVQMAQQRTGFTKQQSHVLKAQILAFRRLKKGEGTLPQELLRAI 508
Query: 508 VPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKE 567
+ + QQQ LPA +NQDR GKI E+Q H ESN KD QA+ S N Q++ KE
Sbjct: 509 ---APPPLELQLQQQLLPAGGSNQDRPGGKIPEEQASHPESNDKDLQAMPSMNGQNVSKE 565
Query: 568 EAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
E + GD+KAAVS + Q AV KEP P+V GKEEQQ SVKSDQE E GL +
Sbjct: 566 EVFTGDEKAAVSTINMQKAPAVMKEPMPLVASGKEEQQTATFSVKSDQESEHGLQKAPVI 625
Query: 627 SDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDS 686
SD +DRGK VAPQ A DA Q KKPAQ +T Q KD G+ RKYHGPLFDFPFFTRKHDS
Sbjct: 626 SDLASDRGKGVAPQFPASDAAQAKKPAQVSTVPQTKDSGSTRKYHGPLFDFPFFTRKHDS 685
Query: 687 VGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLV 746
VGST +VN++NNLTLAYDVKDLL EEG+E+L +KR ENLKKI+G+LAVNLERKRIRPDLV
Sbjct: 686 VGSTGIVNTNNNLTLAYDVKDLLFEEGVEMLTRKRLENLKKINGLLAVNLERKRIRPDLV 745
Query: 747 LRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
LRLQIE+KKL+LLDLQ+RLRDEVDQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ
Sbjct: 746 LRLQIEEKKLKLLDLQARLRDEVDQQQQEIMAMPDRLYRKFVRLCERQRMELTRQVQASQ 805
Query: 807 KAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRME 866
KA+REKQLKSI QWRKKLLE+HWAIRD+RTARNRGVAKYHER+LREFSKRKDDDRNKRME
Sbjct: 806 KAIREKQLKSIMQWRKKLLESHWAIRDSRTARNRGVAKYHERMLREFSKRKDDDRNKRME 865
Query: 867 ALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVE 926
ALKNNDVERYREMLLEQQTSI GDA+ERYAVLSSFLTQTEEYL+KLG KITA KNQQE
Sbjct: 866 ALKNNDVERYREMLLEQQTSISGDASERYAVLSSFLTQTEEYLHKLGGKITATKNQQE-- 923
Query: 927 EAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVN-KYYSLAHAV 985
GLSEEEVR+AAAC EEVMIRNRF+EMNAPRD SSVN +YY+LAHAV
Sbjct: 924 -------------GLSEEEVRAAAACTSEEVMIRNRFMEMNAPRDSSSVNNRYYNLAHAV 970
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
NERV+RQPSMLR GTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME
Sbjct: 971 NERVIRQPSMLRTGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1030
Query: 1046 FKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLV 1105
FKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQR++LFSQEV+A+KFNVLV
Sbjct: 1031 FKGNYGPHLIIVPNAVLVNWKSELHSWLPSVSCIYYVGGKDQRAKLFSQEVSAMKFNVLV 1090
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1165
TTYEFIMYDR+KLSK+DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL
Sbjct: 1091 TTYEFIMYDRTKLSKLDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1150
Query: 1166 KELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225
KELWSLLNLLLPEVFDNRKAFHDWFS+PFQ+E P H+ +DDWLETEKKVIIIHRLHQILE
Sbjct: 1151 KELWSLLNLLLPEVFDNRKAFHDWFSKPFQREAPVHDGEDDWLETEKKVIIIHRLHQILE 1210
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 1285
PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS IYDWIK+TGT+RVDPEDEKRRVQKNP
Sbjct: 1211 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSTIYDWIKSTGTIRVDPEDEKRRVQKNPA 1270
Query: 1286 YQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGH 1345
YQAKVY+TLNNRCMELRKTCNHPLLNYPYF+DLSKDFLVKSCGKLW+LDRILIKLQRTGH
Sbjct: 1271 YQAKVYRTLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGH 1330
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIR
Sbjct: 1331 RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIR 1390
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1465
AAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+KISS QKE
Sbjct: 1391 AAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKE 1450
Query: 1466 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1525
DELRSGGTVDLEDDL GKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR
Sbjct: 1451 DELRSGGTVDLEDDLVGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1510
Query: 1526 MTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVP 1585
MTLETLLHDEERYQET+HDVPSLQEVNRMIARSEDEVELFDQMDEEF WIEEMTRYDQVP
Sbjct: 1511 MTLETLLHDEERYQETLHDVPSLQEVNRMIARSEDEVELFDQMDEEFDWIEEMTRYDQVP 1570
Query: 1586 KWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDD 1644
KWLRASTKEV+ATIA LSKKPSK ILF +G+ SGE+ETERKRG PKGKK PNYKE+D+
Sbjct: 1571 KWLRASTKEVDATIAVLSKKPSKAILFADGMGMASGEMETERKRGRPKGKKSPNYKEIDE 1630
Query: 1645 EIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDY 1704
E G+YSEASSDERNGY EEEGEI EFEDDE S AVGAP NKDQSE+DGP C+GGY+Y
Sbjct: 1631 ETGDYSEASSDERNGYSAHEEEGEIREFEDDESSDAVGAPPVNKDQSEDDGPACDGGYEY 1690
Query: 1705 LRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDE 1764
+ E+TRN+H ++EAGSSGSSS+S+R+T+++SPVSPQKFGSLSALEARPGSLSK++PDE
Sbjct: 1691 HQAVESTRNDHALDEAGSSGSSSDSQRMTRMISPVSPQKFGSLSALEARPGSLSKKLPDE 1750
Query: 1765 LEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERS 1824
LEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPR TVE+PEE+S
Sbjct: 1751 LEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRLRPRLTVEKPEEKS 1810
Query: 1825 CTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 1884
D + RGDS LLPFQ+DNKY AQL++DTEMKA E + +HDQS+ SS+SRRNLPSR+
Sbjct: 1811 SND--VQRGDSFLLPFQVDNKYQAQLKSDTEMKALVEPSGFKHDQSD-SSRSRRNLPSRR 1867
Query: 1885 IANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVC 1944
IA K RAS K+ RLN EDAA+H +ESWDGK+ + SG+S KMSDVIQRR
Sbjct: 1868 IAKTSKLRASPKSSRLNLQSAPAEDAAEHSRESWDGKVPSTSGASTL-GKMSDVIQRRCK 1926
Query: 1945 TV 1946
V
Sbjct: 1927 NV 1928
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560792|ref|XP_003548671.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2813 bits (7292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1429/1927 (74%), Positives = 1629/1927 (84%), Gaps = 34/1927 (1%)
Query: 33 LGFDSLQQQQQHQQQQQ---RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPG 89
LG DS+QQQQQ QQQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP
Sbjct: 38 LGLDSMQQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGSNNFSSP-S 95
Query: 90 SMQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQ 148
+MQ PQQ RK +Q+ Q R QGVE Q+LNPVHQAY+QYAL A QQ+ +Q
Sbjct: 96 AMQLPQQPRKL-----HLGSNQDIQLRGQGVEQQMLNPVHQAYLQYALHAAQQRPTLGIQ 150
Query: 149 SQQQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQ 208
SQQQ K+GML AS +DQ+MRMGNLKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQM+Q
Sbjct: 151 SQQQTKMGMLSSASLQDQEMRMGNLKMQDIMSMQAANQGQGSSSRNSSERGARGDKQMDQ 210
Query: 209 PQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA-- 266
QQ DQK E KP +Q G + N+IRPMQ + QQ IQN Q+A++AQLQA
Sbjct: 211 GQQMTPDQKSEGKPSTQGPTIGHLIPGNMIRPMQGPETQQGIQNVVNTQIAVSAQLQAMQ 270
Query: 267 -WALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTI 325
WA ERNIDLS PANA L+AQLIP+MQSR+V+ K NESN+GA SSPVPVSKQQVTSP +
Sbjct: 271 AWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGAQSSPVPVSKQQVTSPAV 330
Query: 326 AGENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQ 385
A E+S HANSSSD+SGQSGS+KAR T S LGS T+A + N ++++ QQF+VHGR++Q
Sbjct: 331 ASESSAHANSSSDMSGQSGSSKARQTAPSSHLGSITNAGIAGNSSDMATQQFNVHGRESQ 390
Query: 386 VPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQS 444
P RQPV +GNG+P +H Q+S N G D PL K +SSGPE QMQY RQLN+S+PQ+
Sbjct: 391 APPRQPVVVGNGMPSMHSQQSSANTNLGADHPLNAKTSSSGPEPPQMQYTRQLNQSAPQA 450
Query: 445 AIPSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELL 504
P+++G N SQG A QMPQQR FTK QLHVLKAQILAFRRLKKGEGTLPQELL
Sbjct: 451 GGPTNEGGLGNPAKSQGRPA-QMPQQRTNFTKQQLHVLKAQILAFRRLKKGEGTLPQELL 509
Query: 505 RAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSL 564
RAIVPP LE+Q AQQ A NQD+ +G IA +Q+ +ES+ K+ Q++ S N QS
Sbjct: 510 RAIVPPPLEMQ---AQQPNHSARGQNQDKPAGNIAAEQISPIESSAKEPQSIPSINGQSS 566
Query: 565 PKEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
K E++A D+K+ V PV A V+KE AP + GK++Q++ SVKS+Q+ EC +
Sbjct: 567 LKHESFARDEKSIVPPVHVQAVAPPVSKESAPTLSAGKKDQKSIGCSVKSNQDGEC-VNN 625
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
T +++ DRGK++APQ D +Q+KKP+Q +T QPKDVG RKYHGPLFDFPFFTR
Sbjct: 626 TTVRNELALDRGKAIAPQAPVSDTMQIKKPSQTSTGPQPKDVGPTRKYHGPLFDFPFFTR 685
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
KHDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIR
Sbjct: 686 KHDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIR 745
Query: 743 PDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQV
Sbjct: 746 PDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQV 805
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
Q SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDDDRN
Sbjct: 806 QASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRN 865
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
KR+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQ
Sbjct: 866 KRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQ 925
Query: 923 QEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
QEVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LA
Sbjct: 926 QEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLA 985
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 986 HAVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1045
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
LMEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQEV A+KFN
Sbjct: 1046 LMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFN 1105
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
VLVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1106 VLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQ 1165
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQ
Sbjct: 1166 NDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQ 1225
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
ILEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEK ++ +
Sbjct: 1226 ILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKHKLHR 1285
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
NP YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+V+SCGKLWILDRILIKLQR
Sbjct: 1286 NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVRSCGKLWILDRILIKLQR 1345
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLL
Sbjct: 1346 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLL 1405
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462
SIRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI+SH
Sbjct: 1406 SIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASH 1465
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1522
QKEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1466 QKEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1525
Query: 1523 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1582
ERR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1526 ERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYD 1585
Query: 1583 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1641
VPKWLRA+T+EVNA I LSK+ SKN L G +IG++S E +ERKRG PKGKK+PNYKE
Sbjct: 1586 HVPKWLRANTREVNAAIGALSKRSSKNTLLGGSIGIESSEFGSERKRGRPKGKKHPNYKE 1645
Query: 1642 VDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGG 1701
+DDEI EYSE SSDERN Y EEGE+GEF+DD YS A G +KDQ EDG +C+ G
Sbjct: 1646 LDDEILEYSEVSSDERNEYA--HEEGEMGEFDDDGYSMADGVQTIDKDQL-EDGLLCDAG 1702
Query: 1702 YDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKR 1760
Y++ + E+ RNN +VEEAG+SGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKR
Sbjct: 1703 YEFPQSLESARNNQMVEEAGTSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKR 1762
Query: 1761 MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVER 1819
M DELEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ER
Sbjct: 1763 MTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATER 1822
Query: 1820 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879
PEE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ P+ K++R
Sbjct: 1823 PEEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNTPALKNKRT 1876
Query: 1880 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1939
LPSR++AN K S K+ RLNCM ++DA DH +ESW+GK N+SGSS KM+++I
Sbjct: 1877 LPSRRVANTSKLHGSPKSSRLNCMSVPSQDAGDHSRESWEGKPINSSGSSAHGTKMTEII 1936
Query: 1940 QRRVCTV 1946
QRR V
Sbjct: 1937 QRRCKNV 1943
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432144|ref|XP_004133860.1| PREDICTED: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2789 bits (7229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1460/1970 (74%), Positives = 1640/1970 (83%), Gaps = 38/1970 (1%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQ----QFLPP 533
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
+QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 534 GSTSQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 592
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE PV GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 593 PPAMKETVPVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 651
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 652 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 710
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 711 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 770
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 771 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 830
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 831 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 890
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 891 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 950
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 951 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1010
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1011 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1070
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KD+RS+LFSQEV ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1071 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1130
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1131 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1190
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPT NA+DDWLETEKK+IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1191 FHDWFSKPFQKEGPTPNAEDDWLETEKKIIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1250
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1251 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1310
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1311 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1370
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1371 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1430
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1431 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1490
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1491 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1550
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTRYDQ+PKWLRAST+EVN IANLSKK
Sbjct: 1551 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRYDQIPKWLRASTREVNNAIANLSKK 1610
Query: 1606 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDERN
Sbjct: 1611 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERN 1670
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
GY VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1671 GYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1727
Query: 1719 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1728 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1787
Query: 1779 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1837
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1788 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1847
Query: 1838 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1848 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1906
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRR V
Sbjct: 1907 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNV 1956
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520394|ref|XP_003528847.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2777 bits (7199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1420/1926 (73%), Positives = 1618/1926 (84%), Gaps = 35/1926 (1%)
Query: 33 LGFDSLQQQQQHQQQQ--QRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGS 90
LG DS+QQQQQ QQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP +
Sbjct: 38 LGLDSMQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGNNNFSSP-SA 95
Query: 91 MQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQ 150
MQ PQQ RK +Q++ R QG+E Q LNPVHQAY+QYAL AQQ+ +QSQ
Sbjct: 96 MQLPQQPRKL-----HLGSNQDTHQRGQGIEQQTLNPVHQAYLQYALHAQQRPTLGIQSQ 150
Query: 151 QQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQ 210
Q K GML AS KDQ+MRMG+LKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQMEQ Q
Sbjct: 151 QHTKTGMLSSASLKDQEMRMGHLKMQDIMSMQAANQGQGSSSRNSSERVARGDKQMEQGQ 210
Query: 211 QQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---W 267
Q DQK E KP +Q G ++ N+IRPMQA + QQ IQN Q+A +AQLQA W
Sbjct: 211 QIAPDQKSEGKPLTQGPTIGHLISGNMIRPMQAPETQQGIQNVVNTQIAASAQLQAMQAW 270
Query: 268 ALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAG 327
A ERNIDLS PANA L+AQLIP+MQSR+V+ K NES++GA SSPVPVSKQQVTSP +A
Sbjct: 271 ARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESSIGAQSSPVPVSKQQVTSPAVAS 330
Query: 328 ENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVP 387
E+S HANSSSD+SGQSGS+KAR T PS LGS T+A + N + ++ QQF+V GR++Q P
Sbjct: 331 ESSAHANSSSDMSGQSGSSKARQTAPPSHLGSITNAGIAGNSSEMATQQFNVRGRESQAP 390
Query: 388 SRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAI 446
RQPV +GNG+P +H Q+S N D PL K +SSGPE QMQY+RQLN+S+PQ+
Sbjct: 391 PRQPVVVGNGMPSMHSQQSSANTNFSADHPLNAKTSSSGPEPPQMQYMRQLNQSAPQAGG 450
Query: 447 PSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRA 506
P+++G S N+ SQG TQMPQ R FTK QLHVLKAQILAFRRLKKGEGTLPQELLRA
Sbjct: 451 PTNEGGSGNHAKSQGP-PTQMPQHRTSFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRA 509
Query: 507 IVPPSLELQ-QQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLP 565
IVPP LE+Q QQP A NQD+ +G I + + +ES+ K+ ++ S N QS
Sbjct: 510 IVPPPLEMQVQQPNH----AAGGQNQDKPAGNIVAELISPIESSAKEPLSIPSINGQSSL 565
Query: 566 KEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRT 623
K+E++ D+K+ V V A V+KE AP + GKEEQ++ SVKS+Q+ E +
Sbjct: 566 KQESFVRDEKSIVPAVHVQAVAPPVSKESAPTLSAGKEEQKSIGCSVKSNQDGE-RVNNN 624
Query: 624 QQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRK 683
+++ DRGK+VAPQ D +Q+KKPAQ ++ QPKDVG+ RKYHGPLFDFPFFTRK
Sbjct: 625 TVRNELALDRGKAVAPQAHVSDTMQIKKPAQTSSVPQPKDVGSTRKYHGPLFDFPFFTRK 684
Query: 684 HDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRP 743
HDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIRP
Sbjct: 685 HDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRP 744
Query: 744 DLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQ 803
DLVLRL+IE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ
Sbjct: 745 DLVLRLRIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQ 804
Query: 804 TSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSK KDDDRNK
Sbjct: 805 ASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKHKDDDRNK 864
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQ 923
R+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKIT AKNQQ
Sbjct: 865 RLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITTAKNQQ 924
Query: 924 EVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAH 983
EVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LAH
Sbjct: 925 EVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAH 984
Query: 984 AVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043
AVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL
Sbjct: 985 AVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1044
Query: 1044 MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNV 1103
MEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQEV A+KFNV
Sbjct: 1045 MEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNV 1104
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
LVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQN
Sbjct: 1105 LVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 1164
Query: 1164 DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
DLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQI
Sbjct: 1165 DLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQI 1224
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN 1283
LEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEKR++ +N
Sbjct: 1225 LEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRN 1284
Query: 1284 PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT 1343
P YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+VKSCGKLWILDRILIKLQRT
Sbjct: 1285 PAYQMKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRT 1344
Query: 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403
GHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLLS
Sbjct: 1345 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLS 1404
Query: 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463
IRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKI+SHQ
Sbjct: 1405 IRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKIASHQ 1464
Query: 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523
KEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEE
Sbjct: 1465 KEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1524
Query: 1524 RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQ 1583
RR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1525 RRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYDH 1584
Query: 1584 VPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEV 1642
VPKWLRA+T+EVNA I LSK+PSKN L G +IG++S E +ERKRG PKGKK+PNYKE+
Sbjct: 1585 VPKWLRANTREVNAAIGALSKRPSKNTLLGGSIGMESSEFGSERKRGRPKGKKHPNYKEL 1644
Query: 1643 DDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGY 1702
DDEI EYSE SSDERN Y EGEIGEF+DD YS A GA +KDQ EDG +C+ GY
Sbjct: 1645 DDEILEYSEVSSDERNEYA---HEGEIGEFDDDGYSVADGAQTIDKDQL-EDGLLCDAGY 1700
Query: 1703 DYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRM 1761
++ + E+ RNN +VEEAGSSGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKRM
Sbjct: 1701 EFPQSLESARNNQMVEEAGSSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKRM 1760
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERP 1820
DELEEGEIAVSGDSHMDHQ SGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ERP
Sbjct: 1761 TDELEEGEIAVSGDSHMDHQLSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERP 1820
Query: 1821 EERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNL 1880
EE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ PS K++R L
Sbjct: 1821 EEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNSPSLKNKRTL 1874
Query: 1881 PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQ 1940
PSR++AN K S K+ RLNCM ++D +H +ESW+GK N+SGSS KM+++IQ
Sbjct: 1875 PSRRVANTSKLHGSPKSSRLNCMSVPSQDGGEHSRESWEGKPINSSGSSAHGTKMTEIIQ 1934
Query: 1941 RRVCTV 1946
RR V
Sbjct: 1935 RRCKNV 1940
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480215|ref|XP_004155832.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2769 bits (7178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1458/1970 (74%), Positives = 1636/1970 (83%), Gaps = 34/1970 (1%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QQQFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQQQQQQFLPP 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 538 GSTIQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 596
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE V GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 597 PPAMKETVTVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 655
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 656 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 714
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 715 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 774
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 775 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 834
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 835 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 894
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 895 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 954
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 955 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1014
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1015 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1074
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KD+RS+LFSQEV ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1075 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1134
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1135 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1194
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPT NA+DDWLETEKK IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1195 FHDWFSKPFQKEGPTPNAEDDWLETEKKXIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1254
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1255 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1314
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1315 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1374
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1375 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1434
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1435 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1494
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1495 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1554
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTR DQ+PKWLRAST+EVN IANLSKK
Sbjct: 1555 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRCDQIPKWLRASTREVNNAIANLSKK 1614
Query: 1606 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDER
Sbjct: 1615 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERK 1674
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
Y VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1675 XYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1731
Query: 1719 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1732 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1791
Query: 1779 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1837
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1792 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1851
Query: 1838 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1852 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1910
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRR V
Sbjct: 1911 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNV 1960
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568407|ref|XP_003552402.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2709 bits (7021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1389/1909 (72%), Positives = 1589/1909 (83%), Gaps = 43/1909 (2%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNPV AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQVQGVEQQMLNPVQAAYFQYALQASQQKSALAMQSQQQPKVGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SMQ+ NQ QASSS+NSSE F GEK++EQ QQ DQK E SQ
Sbjct: 169 RMGNLKMQDLMSMQAVNQVQASSSRNSSEHFTWGEKRVEQGQQLAPDQKSEGNSSSQGPA 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M NIIRP+QA QQSI N NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 VGNLMPGNIIRPVQALATQQSIPNTMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 288
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSRIV KAN++N+GA SSPVPVS QQVTSP +A E+S HANSSSDVS QSGS
Sbjct: 289 QLIPLMQSRIVQQPKANDTNLGAMSSPVPVSNQQVTSPAVASESSAHANSSSDVSAQSGS 348
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QQFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 349 AKARQTAPPSHLSPPISAGIASSSSDMAAQQFSLHGRDAQGSLKQSVLTINGMPSVHPQQ 408
Query: 406 TSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL VK +SSG E ++MQY+RQL++S+ Q+ +++G S N+ +QGG
Sbjct: 409 SSANMNLGADHPLNVKTSSSGSEPAKMQYIRQLSQSTSQAGGLTNEGGSGNHPKTQGG-P 467
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 468 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 526
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I + R E N KD+Q +SS N ++ K+E + D+ + V+ V
Sbjct: 527 ---GAQNQEKSAGNIVAEHPRQNEVNAKDSQPISSINGKNSSKQEVFVRDENSTVTAVQV 583
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
QG VTKE A GKEEQQ+ S KSDQE E G+ RT +++ D+GK+VA PQ
Sbjct: 584 QGTPRVTKESA-----GKEEQQSVACSAKSDQESEHGIGRTPVRNELVLDKGKAVAAPQA 638
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+ Q KDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 639 SVNDAMQLNKPAQASAVSQTKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 697
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 698 AYDVKELLFEEGIEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 757
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 758 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 817
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 818 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 877
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 878 EQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 937
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR+AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 938 SEEEVRAAAACAGEEVMIRNRFMEMNAPKDNSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 997
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 998 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1057
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+VNWKSEL+ WLPSVSCI+Y G KD RS+L+SQE+ A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1058 MVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1117
Query: 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1118 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1177
Query: 1182 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1241
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1178 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1237
Query: 1242 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1238 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1297
Query: 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
RKTCNHP LNYP +LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1298 RKTCNHPSLNYPLLGELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1357
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+YL WR+LVYRRIDGTT+L+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1358 DYLNWRRLVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1417
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDELRSGGTVD+ED+L
Sbjct: 1418 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDELV 1477
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1541
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1478 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1537
Query: 1542 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1601
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1538 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1597
Query: 1602 LSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGY 1660
LSK+PSKN L G +IG++S E+ +ER+RG PKGKK+PNYKE++DE GEYSEA+S++RN
Sbjct: 1598 LSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHPNYKELEDENGEYSEANSEDRNED 1657
Query: 1661 PVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEA 1720
Q EGE GEFEDD YSGA G L EEDG + GY+ SEN RNNHVVEEA
Sbjct: 1658 SAQ--EGENGEFEDDGYSGADGNRL------EEDGLTSDAGYEIALSSENARNNHVVEEA 1709
Query: 1721 GSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMD 1779
GSSGSSS+S+RLT+ VSP VS +KFGSLSAL+ARPGS+SK M DELEEGEI VSGDSHMD
Sbjct: 1710 GSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDARPGSISKIMGDELEEGEIVVSGDSHMD 1769
Query: 1780 HQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSSL 1837
HQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH +ERPE++S ++ L RG+SS+
Sbjct: 1770 HQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHAMERPEDKSGSEMISLQRGESSV 1829
Query: 1838 LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 1897
L D KY Q R D E K+ G+SN+ +HD++E S K+++ LPSRKIAN+ K S K+
Sbjct: 1830 L---ADYKYQIQKRIDPESKSFGDSNASKHDKNEASLKNKQKLPSRKIANSSKLHGSPKS 1886
Query: 1898 GRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
RLNC +ED +H ESW+GK N +GSS K +++IQR V
Sbjct: 1887 NRLNCTSAPSEDGNEHPTESWEGKHLNPNGSSAHGTKTTEIIQRGCKNV 1935
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531981|ref|XP_003534554.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2654 bits (6880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1378/1913 (72%), Positives = 1581/1913 (82%), Gaps = 53/1913 (2%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNP AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQIQGVEQQMLNPAQAAYFQYALQASQQKSALEMQSQQQPKMGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SM + NQAQASSS+NSSE F RGEK++EQ QQ DQK E SQ +
Sbjct: 169 RMGNLKMQDLMSMPAVNQAQASSSRNSSEHFTRGEKRVEQGQQLAPDQKSEGNSSSQGAV 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M+ NIIRP+Q QQSI N+ NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 GNL-MSGNIIRPVQDLATQQSIPNSMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 287
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSR+V KAN++N+G+ SSP+PVS QQVTSP +A E+S HA+SSSDVS QSGS
Sbjct: 288 QLIPLMQSRMVQQPKANDTNLGSLSSPIPVSNQQVTSPAVASESSAHAHSSSDVSAQSGS 347
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 348 AKARQTAPPSHLSPPISAGIASSSSDMAALQFSLHGRDAQGSLKQSVLTVNGMPSVHPQQ 407
Query: 406 TSLNMTPGVDQPLPVKNSS-GPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL K+SS G E +MQY+RQLN+S+ Q+ +++G S N+ +QGG
Sbjct: 408 SSANMNLGADHPLNAKSSSSGSEPVKMQYIRQLNQSASQAGGLTNEGGSGNHTKTQGG-P 466
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 467 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 525
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I +Q R E N K++Q +SS N + K+E + D+ + V+ V
Sbjct: 526 ---GAQNQEKSAGNIVAEQPRQNEVNAKESQPISSINGKISSKQEVFVRDENSPVTAVHL 582
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
Q VTKE A G+EEQQ+ + KSDQE E G+ R ++ D+GK+VA PQ
Sbjct: 583 QPTPPVTKESA-----GQEEQQSVACAPKSDQESEHGIGR----NELVLDKGKAVAAPQA 633
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+T QPKDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 634 SVTDAMQLNKPAQASTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 692
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 693 AYDVKELLFEEGMEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 752
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 753 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 812
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 813 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 872
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FL+QTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 873 EQQTSIEGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 932
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 933 SEEEVRVAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 992
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 993 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1052
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+VNWKSELH WLPSVSCI+Y G KD RS+L+SQE+ A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1053 MVNWKSELHTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1112
Query: 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1113 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1172
Query: 1182 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1241
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1173 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1232
Query: 1242 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1233 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1292
Query: 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
RKTCNHP LNYP S+LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1293 RKTCNHPSLNYPLLSELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1352
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+YL WR+LVYRRIDGTTSL+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1353 DYLNWRRLVYRRIDGTTSLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1412
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDE+RSGGTVD+ED+L
Sbjct: 1413 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDEVRSGGTVDMEDELV 1472
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1541
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1473 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1532
Query: 1542 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1601
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1533 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1592
Query: 1602 LSKKPSKNILFGSNIGVDSGE-IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNG 1659
LSK+P KN L G ++ ++S E + +ER+RG PKGKK+PNYKE++DE GEYSEASS++RN
Sbjct: 1593 LSKRPLKNTLLGGSVAIESSEVVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNE 1652
Query: 1660 YPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEE 1719
Q GEIGEFEDD SGA G L EEDG + GY+ R SEN RNNHVVEE
Sbjct: 1653 DSAQ---GEIGEFEDDVCSGADGNRL------EEDGLTSDAGYEIARSSENARNNHVVEE 1703
Query: 1720 AGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
AGSSGSSS+S+RLT+ VSP VS +KFGSLSAL++RPGS+SK M DELEEGEIAVSGDSHM
Sbjct: 1704 AGSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDSRPGSISKIMGDELEEGEIAVSGDSHM 1763
Query: 1779 DHQQSGSWTHDRDEGEDEQVL-QPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1836
DHQQSGSW HDRDEGEDEQVL QPKIKRKRS+RVRPRH +ER E++S + L RG+SS
Sbjct: 1764 DHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHAMERLEDKSGNEIISLQRGESS 1823
Query: 1837 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN---LPSRKIANAPKSRA 1893
LL D KY Q R D E K+ G+SN+ + D++E S S +N L SRK+AN K
Sbjct: 1824 LL---ADYKYQIQTRIDPESKSFGDSNASKRDKNESSLTSLKNKQKLSSRKVANTSKLHG 1880
Query: 1894 SLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTV 1946
S K+ RLNC +ED +H +ESW+GK N +GSS K +++IQR V
Sbjct: 1881 SPKSNRLNCTSAPSEDGNEHPRESWEGKHLNPNGSSAHGTKTTEIIQRGCKNV 1933
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1953 | ||||||
| TAIR|locus:2062999 | 2193 | BRM "AT2G46020" [Arabidopsis t | 0.846 | 0.754 | 0.654 | 0.0 | |
| UNIPROTKB|D4AA07 | 1262 | Smarca4 "Transcription activat | 0.244 | 0.377 | 0.459 | 1e-132 | |
| POMBASE|SPAC1250.01 | 1199 | snf21 "ATP-dependent DNA helic | 0.243 | 0.396 | 0.456 | 1.3e-129 | |
| ASPGD|ASPL0000042729 | 1407 | AN2278 [Emericella nidulans (t | 0.350 | 0.486 | 0.355 | 6.9e-128 | |
| UNIPROTKB|P51532 | 1647 | SMARCA4 "Transcription activat | 0.244 | 0.289 | 0.459 | 1.5e-121 | |
| UNIPROTKB|Q9HBD4 | 1679 | SMARCA4 "SMARCA4 isoform 2" [H | 0.244 | 0.284 | 0.459 | 2.6e-120 | |
| TAIR|locus:2150270 | 1064 | CHR23 "chromatin remodeling 23 | 0.248 | 0.456 | 0.347 | 3.4e-118 | |
| UNIPROTKB|K7GT64 | 980 | LOC100622433 "Uncharacterized | 0.244 | 0.486 | 0.459 | 4.4e-118 | |
| CGD|CAL0003962 | 1303 | orf19.239 [Candida albicans (t | 0.342 | 0.513 | 0.363 | 2.8e-117 | |
| POMBASE|SPCC1620.14c | 1680 | snf22 "ATP-dependent DNA helic | 0.238 | 0.277 | 0.452 | 2.8e-117 |
| TAIR|locus:2062999 BRM "AT2G46020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5351 (1888.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 1107/1692 (65%), Positives = 1254/1692 (74%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLG-GQGMAANIIRPMQAAQHQQSIXXXXXXXXXXXXXXX 265
E+ + S Q+ E K QQ +G GQ M N+IRPMQA Q QQ +
Sbjct: 200 ERQTESSSQQRNETKSHPQQQVGTGQLMPGNMIRPMQAPQAQQLVNNMGNNQLAFAQQWQ 259
Query: 266 XXXX-ERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPT 324
R ++ A+ +Q+ I+Q+R+ A KA E N+ + S +P+S Q +S
Sbjct: 260 AMQAWARERNIDLSHPANA-SQMAHILQARMAAQQKAGEGNVASQSPSIPISSQPASSSV 318
Query: 325 IAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDN 384
+ GENSPHAN AKAR +S ST+S ++ FS GR+N
Sbjct: 319 VPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMVNP----AMNPFSGQGREN 374
Query: 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP-ENSQMQYLRQLNRSSPQ 443
+ R V NG+P +P QTS N TP +DQ K S GP E+ QMQ RQLN +P
Sbjct: 375 PMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQQPRQLNTPTPN 434
Query: 444 SAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQEL 503
P Q G TQ QQR GFTK QLHVLKAQILAFRRLKKGEG+LP EL
Sbjct: 435 LVAPSDTGPLSNSSL-QSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPPEL 493
Query: 504 LRAIVXXXXXXXXXXXXXXXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQS 563
L+AI QDR S K EDQ R LE GK++QA +SSN
Sbjct: 494 LQAISPPPLELQTQRQISPAIGKV---QDRSSDKTGEDQARSLEC-GKESQAAASSNGPI 549
Query: 564 LPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
KEE GD + A++ Q + KE V KEEQQ V VKSDQ + +
Sbjct: 550 FSKEEDNVGDTEVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVKSDQGADSSTQK 609
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
+ SD AD+GK+VA D Q K P QA + PKD +ARKY+GPLFDFPFFTR
Sbjct: 610 NPR-SDSTADKGKAVAS-----DGSQSKVPPQANSPQPPKDTASARKYYGPLFDFPFFTR 663
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
K DS GS A N++NNLTLAYD+KDL+ EEG E L KKR+++LKKI+G+LA NLERKRIR
Sbjct: 664 KLDSYGS-ATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIR 722
Query: 743 PDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE EVD+QQQEIM+MPDR YRKFVRLCERQR+E+ RQV
Sbjct: 723 PDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQRLEMNRQV 782
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
+QKA+REKQLK+I QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDD RN
Sbjct: 783 LANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDGRN 842
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXX 922
KRMEALKNNDVERYREMLLEQQT++PGDAAERYAVLSSFLTQTE+YL+KLG KIT
Sbjct: 843 KRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKITATKNQ 902
Query: 923 XXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
RLQGLSEEEVR+AA CA EEV+IRNRF EMNAP++ SSVNKYY+LA
Sbjct: 903 QEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKENSSVNKYYTLA 962
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSML+AGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 963 HAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1022
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
LMEFKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFN
Sbjct: 1023 LMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFN 1082
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1083 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1142
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
ND P+VFDNRKAFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQ
Sbjct: 1143 NDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQ 1202
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
ILEPFMLRRRVEDVEGSLP KVS+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QK
Sbjct: 1203 ILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQK 1262
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
NPIYQAK+Y+TLNNRCMELRK CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQR
Sbjct: 1263 NPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQR 1322
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFN D+DCFIFLL
Sbjct: 1323 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLL 1382
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462
SIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSH
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSH 1442
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1522
QKEDELRSGG+VDLEDD+AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1443 QKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1502
Query: 1523 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1582
ERRMTLETLLHDEERYQETVHDVPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++
Sbjct: 1503 ERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHE 1562
Query: 1583 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1641
QVPKWLRAST+EVNAT+A+LSKKPSKN+L SN+ V G ERKRG PK KK NYKE
Sbjct: 1563 QVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKE 1621
Query: 1642 VDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGG 1701
++D+I YSE SS+ERN +GA+G +NK + + + PVC G
Sbjct: 1622 IEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--G 1679
Query: 1702 YDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRM 1761
YDY S + + N ++A R ++ SPVS QKFGSLSAL+ RPGS+SKR+
Sbjct: 1680 YDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRL 1739
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE 1821
D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER +
Sbjct: 1740 LDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVD 1799
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTEMKAHGESNSLRHDQSEPSSKSRRN 1879
++ P + P Q+D Y ++LRT D+ +S+S +S P+ K
Sbjct: 1800 G---SEMPAAQ------PLQVDRSYRSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVAST 1850
Query: 1880 LPSRKIANAPKS 1891
S+ ++PKS
Sbjct: 1851 --SKLHVSSPKS 1860
|
|
| UNIPROTKB|D4AA07 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 527 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 586
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 587 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 645
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 646 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 705
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 706 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 760
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 761 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 820
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 821 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 873
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 874 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 933
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 934 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 993
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 994 QQNEVRVLRLCTVNSVEEKILAAAK 1018
|
|
| POMBASE|SPAC1250.01 snf21 "ATP-dependent DNA helicase Snf21" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 231/506 (45%), Positives = 310/506 (61%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWML 1013
GE + MN P D ++ YY++AH + E V QPS+L G L++YQ+ GLQWM+
Sbjct: 372 GESAYDEDMDRRMN-PEDDRKID-YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMI 429
Query: 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL 1073
SLYNN LNGILADEMGLGKT+Q ++LI +L+E K GP L+IVP + L NW E +W
Sbjct: 430 SLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWA 489
Query: 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR 1133
PS+ I Y G R L Q V F VL+TTYE+I+ DR LS++ W Y+IIDE R
Sbjct: 490 PSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHR 548
Query: 1134 MKDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQ 1192
MK+ +S L L Y R RL+LTGTPLQN+ P +F++ K+F +WF+
Sbjct: 549 MKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNT 608
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
PF G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+RC+M
Sbjct: 609 PFANTG---GQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQM 665
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312
S +Q +Y +K G L V ED KR K I K L N M+L+K CNHP +
Sbjct: 666 SGLQQKLYYQMKKHGMLYV--EDAKRG--KTGI------KGLQNTVMQLKKICNHPFV-- 713
Query: 1313 PYFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363
F D+ + D L + GK +LDRIL KL R+GHR+L+F MT++++I+E+Y
Sbjct: 714 --FEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDY 771
Query: 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 1423
L +RQ Y R+DG+T +DR + FN ++ +FLLS RA G GLNLQ+ADTVII+D
Sbjct: 772 LHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFD 831
Query: 1424 PDPNPKNEEQAVARAHRIGQKREVKV 1449
D NP + QA RAHRIGQ +EV++
Sbjct: 832 SDWNPHQDLQAQDRAHRIGQTKEVRI 857
|
|
| ASPGD|ASPL0000042729 AN2278 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 260/732 (35%), Positives = 405/732 (55%)
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYH-ERILREFSKRKDDDR 861
+ + + M+++ L+ ++ +KL + RDAR +R + H + I+ ++ ++
Sbjct: 341 RATHRRMKKQSLRE-ARITEKLEKQQ---RDARESREKRKQDVHLQAIVNHGAELRETAS 396
Query: 862 NKRMEA--LKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXX 919
+R A L ++ ++ M E+Q + A +R L + E YL LG
Sbjct: 397 QQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKA--NDEETYLKLLGQ----A 450
Query: 920 XXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRN---RFLEMNAPRDGSSVN 976
+L ++ R+ A GEE + + + +G
Sbjct: 451 KDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDDDDDEDIASGSDEEGEGRR 510
Query: 977 K--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
K YY++AH + E + QPS+L GTL++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+
Sbjct: 511 KIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTI 570
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q ++LI +++E K N GP L+IVP + L NW E KW PSVS I Y G + R + Q
Sbjct: 571 QTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQ-QQ 629
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-R 1153
+ F VL+TTYE+I+ DR LSK+ W ++I+DE RMK+ +S L+ L +Y R R
Sbjct: 630 NIRWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYR 689
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
L+LTGTPLQN+ P +F + K+F +WF+ PF G D L E++
Sbjct: 690 LILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMD---LTEEEQ 746
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
+++I RLH++L PF+LRR +DVE LP K V++CR SA+Q+ + + AT V
Sbjct: 747 LLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQL-ATHNKMVVS 805
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL------SKDFLVKSC 1327
+ + +V + L+N M+LRK CNHP + + D + D + ++
Sbjct: 806 DGKGGKVGM---------RGLSNMLMQLRKLCNHPFV-FEQVEDQVNPGRGTNDLIWRTA 855
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK +LDRIL K + TGHRVL+F MT++++I+E++L+ R + Y R+DG+T +DR +
Sbjct: 856 GKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLL 915
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN+ DS+ F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV
Sbjct: 916 KLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 975
Query: 1448 KVIYMEAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
+++ + I+S+ E+++ R+ +D++ + ++ R+ + + ++
Sbjct: 976 RILRL------ITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLET 1029
Query: 1506 ADEVINAGRFDQ 1517
A+ AG D+
Sbjct: 1030 AEGTDQAGDQDE 1041
|
|
| UNIPROTKB|P51532 SMARCA4 "Transcription activator BRG1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAK 1219
|
|
| UNIPROTKB|Q9HBD4 SMARCA4 "SMARCA4 isoform 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAK 1219
|
|
| TAIR|locus:2150270 CHR23 "chromatin remodeling 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 3.4e-118, Sum P(2) = 3.4e-118
Identities = 184/530 (34%), Positives = 289/530 (54%)
Query: 776 IMAMPDRQYR---KFVRLCERQRVELMRQVQTSQKAMR----EKQLKSISQWRKKLLEAH 828
+M +P R Y FV + Q R + +++ +R EK L +Q RK E
Sbjct: 167 MMRLPRRMYGVGDSFVMEADDQ----FRNKRDAERLLRLEEEEKNLIETTQ-RKFFAEVL 221
Query: 829 WAIRDART---ARNRGVAKYHERILREFSK-RKDDDRNKRME--ALKNNDVERYREMLLE 882
A+R+ + A +R + ++ + K R+ R +++ ALK++D E Y ++ E
Sbjct: 222 NAVREFQLQIQASHRRCKQRNDGVQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKE 281
Query: 883 QQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGL- 941
+ E+ L+ FL +T + LG+ + L +
Sbjct: 282 SKN-------EK---LTLFLEETNKIFVSLGAAVQRQKDAKLSENTKLLKGSESDLSDVD 331
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA-HAVNERVMRQPSMLRAGT 1000
+ E+V A E++ + + N +G + ++LA H++ E+V +QPS+L+ G
Sbjct: 332 APEDVLPAQDI---EIIDSDNNDDSNDLLEGE---RQFNLAIHSIQEKVTKQPSLLQGGE 385
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR YQ+ GLQWM+SLYNN NGILADEMGLGKT+Q +ALIAYL+E K +GPHLI+ P A
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKA 445
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
VL NW++E W PS+S Y G+K++R+ + ++ +A KFNVL+T Y+ IM D++ L K
Sbjct: 446 VLPNWENEFALWAPSISAFLYDGSKEKRTEIRAR-IAGGKFNVLITHYDLIMRDKAFLKK 504
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+DW Y+I+DE R+K+ E LA+ L YR +RRLLLTGTP+QN P +
Sbjct: 505 IDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHI 564
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F++ F +WF+ PF + G D E++++II+RLH ++ PF+LRR+ +VE
Sbjct: 565 FNSIHNFEEWFNTPFAECGSASLTD------EEELLIINRLHHVIRPFLLRRKKSEVEKF 618
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
LP K ++L+C MSA Q Y + G + + + K + +N Q +
Sbjct: 619 LPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
|
|
| UNIPROTKB|K7GT64 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 4.4e-118, Sum P(3) = 4.4e-118
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 61 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 120
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 121 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 179
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 180 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 239
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 240 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 294
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 295 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 354
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 355 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 407
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 408 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 467
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 468 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 527
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 528 QQNEVRVLRLCTVNSVEEKILAAAK 552
|
|
| CGD|CAL0003962 orf19.239 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 2.8e-117, Sum P(4) = 2.8e-117
Identities = 263/724 (36%), Positives = 408/724 (56%)
Query: 956 EVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
EV + N+ + R+ + YY +AH + E++ QP++L G L++YQ+ GL+WM+SL
Sbjct: 459 EVAVENKSDDKAELREKTD---YYEVAHRIKEKITEQPTILVGGKLKEYQMKGLEWMVSL 515
Query: 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS 1075
YNN LNGILADEMGLGKT+Q ++L+ YL+E K + LIIVP + + NW E KW PS
Sbjct: 516 YNNHLNGILADEMGLGKTIQSISLVTYLIE-KKHENKFLIIVPLSTITNWTLEFEKWAPS 574
Query: 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135
+ I Y G++ QR R ++ F VL+TTYE+++ +R L+K + ++IIDE RMK
Sbjct: 575 IKVIVYKGSQQQR-RSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMK 633
Query: 1136 DRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPF 1194
+ +S L++ L Y + + RL+LTGTPLQN+ P +F++ K+F DWF+ PF
Sbjct: 634 NAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPF 693
Query: 1195 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSA 1254
G + L E+ +++I RLH++L PF+LRR +DVE LP KV VL+C +S
Sbjct: 694 ANTGAQEKIE---LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSG 750
Query: 1255 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---- 1310
+Q +Y + L V + K+ I K LNN+ M+LRK CNHP +
Sbjct: 751 LQYVLYQQMLKHNALFVGADVGGA---KSGI------KGLNNKIMQLRKICNHPFVFEEV 801
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
+ S L+ D + + GK +LDR+L K +++GHRVL+F MT+++DI+E++L+W+ +
Sbjct: 802 ESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDM 861
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG+T E+R+ + FN+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP
Sbjct: 862 KYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPH 921
Query: 1430 NEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQKED---ELRSGGTVDLEDDLA 1481
+ QA RAHRIGQK EV+++ + ++V + I +HQK D ++ G D +
Sbjct: 922 QDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAE 981
Query: 1482 GKDRYIGSIEGLIRNNIQQYKID-MADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
++ ++ + N + D + D+ +N + EE ++ ++ DEER E
Sbjct: 982 EQEAFLKRLLEADANGADNEENDSLDDDELN----EILARSEEEKVLFASM--DEERKSE 1035
Query: 1541 TVHDVPSLQEVNRMIAR-SEDEVELFDQMDEEFGWIEEM--TRYDQ---VPKWLRASTKE 1594
V L E + + A +ED F++ ++E + + RYD +WL+A +
Sbjct: 1036 KVPYKSRLIEKDELPAVFTEDISHHFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDD 1095
Query: 1595 VNATIANLSKKPSKNILFGS-NIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEAS 1653
N T+ K+ + I N + G +E + K G E DDE ++ EA+
Sbjct: 1096 -NDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVG-------EEDDE--DFEEAA 1145
Query: 1654 SDER 1657
+
Sbjct: 1146 QPRK 1149
|
|
| POMBASE|SPCC1620.14c snf22 "ATP-dependent DNA helicase Snf22" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 225/497 (45%), Positives = 304/497 (61%)
Query: 965 EMNAPRDGSSVN-KYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGI 1023
E+ AP N Y+ +AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGI
Sbjct: 833 ELEAPISEEDKNLDYFKVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGI 891
Query: 1024 LADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVG 1083
LADEMGLGKT+Q +A I YL+E K GP LIIVP + L NW E KW PSV I Y G
Sbjct: 892 LADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKG 951
Query: 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143
R L SQ + + FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L
Sbjct: 952 PPQLRKTLQSQ-IRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTS 1010
Query: 1144 DLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHN 1202
L Y Q RL+LTGTPLQN+ P++F++ K+F +WF+ PF G
Sbjct: 1011 TLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---G 1067
Query: 1203 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262
D L E+ ++II RLH++L PF+ RR +DVE LP KV V++C +S +Q +Y
Sbjct: 1068 QDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQ 1127
Query: 1263 IKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK-- 1320
+K G L VD E K + K L N M+L+K CNHP + F D+ +
Sbjct: 1128 MKKHGMLFVDGEKGKTGI-----------KGLQNTVMQLKKICNHPFI----FEDVERAI 1172
Query: 1321 -------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373
D L ++ GK +LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R
Sbjct: 1173 DPSGTNVDLLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLR 1232
Query: 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433
+DG+T +DR S + FN SD +IF+LS RA G GLNLQ+ADTVII+D D NP + Q
Sbjct: 1233 LDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 1434 AVARAHRIGQKREVKVI 1450
A RAHRIGQ +EV+++
Sbjct: 1293 AQDRAHRIGQTKEVRIL 1309
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EVK6 | BRM_ARATH | 3, ., 6, ., 4, ., 1, 2 | 0.6891 | 0.9406 | 0.8376 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.991 |
| 3rd Layer | 3.6.4 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1953 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 1e-130 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-100 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 6e-90 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-34 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-27 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 4e-21 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-20 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 5e-11 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-08 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-07 | |
| smart00951 | 36 | smart00951, QLQ, QLQ is named after the conserved | 6e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.003 | |
| pfam11496 | 279 | pfam11496, HDA2-3, Class II histone deacetylase co | 0.003 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 435 bits (1121), Expect = e-130
Identities = 228/611 (37%), Positives = 341/611 (55%), Gaps = 85/611 (13%)
Query: 851 REFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERY-AVLSSFLTQTEEYL 909
E SKR + R K ++ K ++++ +L +Q +I D + L L QTE +
Sbjct: 55 AEISKR-EKARLKELKKQKKQEIQK---ILEQQNAAIDADMNNKGKGRLKYLLQQTEIFA 110
Query: 910 YKLGSKITAAKNQQEVEEAANAAAAAARLQG---LSEEEVRSAAACAGEEVMIRNRFLEM 966
+ +++A+A A R + L+EEE EE
Sbjct: 111 HFAKG-----------DQSASAKKAKGRGRHASKLTEEE--EDEEYLKEE---------- 147
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
DG + R++ QPS ++ G +RDYQ+ GL W++ LY N +NGILAD
Sbjct: 148 ---EDGLGGSG--------GTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILAD 195
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L+ YL E++G GPH+++ P + L NW +E+ ++ P + + + G +
Sbjct: 196 EMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPE 255
Query: 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146
+R+ + + A KF+V VT++E + +++ L + W+YIIIDEA R+K+ S+L++ +
Sbjct: 256 ERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315
Query: 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206
+ RLL+TGTPLQN+L ELW+LLN LLPE+F + + F +W FQ G +
Sbjct: 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEW----FQISGENDQQE-- 369
Query: 1207 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKAT 1266
++ +LH++L PF+LRR DVE LPPK +L+ MS +Q Y
Sbjct: 370 ---------VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY------ 414
Query: 1267 GTLRVDPEDEKRRVQKN--PIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDL 1318
K +QK+ + K L N M+LRK CNHP L PY +
Sbjct: 415 ----------KALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG- 463
Query: 1319 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
+ LV++ GK+ +LD++L KL+ RVL+FS MT+LLDILE+YL +R Y RIDG T
Sbjct: 464 --EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 521
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR+++I FN S+ F+FLLS RA G G+NL +AD VI+YD D NP+ + QA RA
Sbjct: 522 GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581
Query: 1439 HRIGQKREVKV 1449
HRIGQK+EV+V
Sbjct: 582 HRIGQKKEVQV 592
|
Length = 1033 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-100
Identities = 128/312 (41%), Positives = 183/312 (58%), Gaps = 17/312 (5%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFKGNYGPHLIIVPNAVL 1062
YQ+ G+ W++SL +N L GILADEMGLGKT+Q +AL+A YL E K GP L++ P + L
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIM---YDRSKL 1118
NW +E KW P++ + Y G +RS+L S ++V++TTYE + S L
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 1119 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPE 1178
+KV+W +++DEA R+K+ +S L + L + + + RLLLTGTP+QN+L+ELW+LLN L P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 1179 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1238
F + K F +WF+ P N + E K+ I+RLH++L+PF+LRR +DVE
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKNL---EKGKE--GINRLHKLLKPFLLRRTKDDVEK 235
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
SLPPK VL C +S Q +Y + L + E +L N
Sbjct: 236 SLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVG-------IASLLNLI 288
Query: 1299 MELRKTCNHPLL 1310
M+LRK CNHP L
Sbjct: 289 MQLRKICNHPYL 300
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = 6e-90
Identities = 185/529 (34%), Positives = 267/529 (50%), Gaps = 50/529 (9%)
Query: 999 GTLRDYQIVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY-GPHLII 1056
LR YQ+ G+ W+ L +N L GILAD+MGLGKTVQ +AL+ L+E Y GP LI+
Sbjct: 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIV 396
Query: 1057 VPNAVLVNWKSELHKWLPSVSCI--YYVGAKDQRSRL-----FSQEVAALKFNVLVTTYE 1109
VP ++L NWK E K+ P + + Y+ + + + + F+V++TTYE
Sbjct: 397 VPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYE 456
Query: 1110 FI---MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLK 1166
+ + D L K++W +++DEA R+K+ +S + L + RL LTGTPL+N L
Sbjct: 457 LLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLG 516
Query: 1167 ELWSLLNL-LLPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
ELWSLL L P + A F F +P Q E +D E + + I L ++L
Sbjct: 517 ELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAE-------EDIGPLEARELGIELLRKLL 569
Query: 1225 EPFMLRRRVEDVE--GSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQ 1281
PF+LRR EDVE LPPK+ VL C +S Q +Y ++ + ED +
Sbjct: 570 SPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL-EKAD 628
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP-----------------YFSDLSKDFLV 1324
+ + LR+ CNHP L F L K +
Sbjct: 629 SDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQ 688
Query: 1325 KSCGKLWILDRIL---IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
S GKL LD +L + + H+VL+FS T +LD+LE+YL+ + Y R+DG+T +
Sbjct: 689 LSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAK 748
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
R+ I FN+ D + +FLLS++A G GLNL ADTVI++DP NP E QA+ RAHRI
Sbjct: 749 RRQELIDRFNA-DEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807
Query: 1442 GQKREVKVIYMEAVVD---KISSHQKEDELRSGGTVDLEDDLAGKDRYI 1487
GQKR VKV + KI Q E + ++ + +
Sbjct: 808 GQKRPVKVYRLITRGTIEEKILELQ-EKKQELLDSLIDAEGEKELSKLS 855
|
Length = 866 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 22/204 (10%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
LR YQ ++ +LS + ILA G GKT+ + + +G G L++VP
Sbjct: 8 PLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEAL-KRGKGGRVLVLVPT 63
Query: 1060 AVLV-NWKSELHKWLPS---VSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-- 1111
L W EL K PS Y G ++Q +L S K ++LVTT +
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESG-----KTDILVTTPGRLLD 118
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR-YRCQRRLLLTGTPLQNDLKEL 1168
+ + KLS + +I+DEA R+ D L + L + + LLL+ TP + L
Sbjct: 119 LLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLL 178
Query: 1169 WSLLNLLLPEVFDNRKAFHDWFSQ 1192
LN P D + Q
Sbjct: 179 ELFLN--DPVFIDVGFTPLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS--VSC 1078
+ +LA G GKT+ + I L+ G L++ P L N +E K L +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL-DSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD 1136
Y +G + + ++ + K +++V T ++ + R KLS +I+DEA R+ +
Sbjct: 61 GYLIGGTSIKQQE---KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117
Query: 1137 RES---VLARDLDRYRCQRRLLLTGTP 1160
+ L L + ++ LLL+ TP
Sbjct: 118 QGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 1317 DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376
+ + L KL L +L + + G +VL+F K+LD L E L+ + + G
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHG 60
Query: 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436
S E+RE + DF + + L++ RG++L + VI YD +P + Q +
Sbjct: 61 DGSQEEREEVLKDFREGE---IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIG 117
Query: 1437 RAHRIGQKREVKVI 1450
RA R GQK ++
Sbjct: 118 RAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-21
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1358 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417
+ L E L+ + R+ G S E+RE + FN+ L++ A RGL+L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIK---VLVATDVAERGLDLPGVD 57
Query: 1418 TVIIYDPDPNPKNEEQAVARAHRIG 1442
VIIYD +P + Q + RA R G
Sbjct: 58 LVIIYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-20
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+ L+ + R+ G S E+RE + DF + S L++ AGRG++L + VI
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSK---VLVATDVAGRGIDLPDVNLVIN 57
Query: 1422 YDPDPNPKNEEQAVARAHRIG 1442
YD NP + Q + RA R G
Sbjct: 58 YDLPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 5e-11
Identities = 78/370 (21%), Positives = 108/370 (29%), Gaps = 48/370 (12%)
Query: 3 SGGGPSRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPD 62
+G GP + T P + + G QQ Q QQ + Q
Sbjct: 128 AGMGPHQMSRVGT---MQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAG------ 178
Query: 63 GNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGVEH 122
G G G P G QPPQ + Q + Q
Sbjct: 179 ----------GMNQGQQG------PVGQQQPPQM---GQPGMPGGGGQGQMQQQGQPGGQ 219
Query: 123 QLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMG----NLKMQEL 178
Q NP Q +Q Q QQ + QA++G G Q +M + MQ+
Sbjct: 220 QQQNPQMQQQLQNQQQ-QQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQ 278
Query: 179 ISMQSANQAQASSSKNSSEQF----GRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMA 234
Q Q+Q N +Q G Q P Q + QQ + G
Sbjct: 279 PPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQ 338
Query: 235 ANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQAWALERNIDLSQPAN-ASLIAQLIPIMQS 293
M+ + Q Q A + N + Q +L I Q
Sbjct: 339 QLKQ--MKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQG 396
Query: 294 RIVANHKANESNMGAPSSPVPVSKQQVT-------SPTIAGENSPHANSSSDVSGQSGSA 346
+ AN + G SSP PV + Q P++ P + VSG +
Sbjct: 397 GLGAN-PMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPS 455
Query: 347 KARPTVSPSP 356
SPSP
Sbjct: 456 PPALMPSPSP 465
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 43/187 (22%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query: 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057
LR YQ L ++ + G++ G GKTV IA L L++V
Sbjct: 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLV 87
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE--FIMYD 1114
P L++ W L K+L D+ E V V T +
Sbjct: 88 PTKELLDQWAEALKKFL---------LLNDEIGIYGGGEKELEPAKVTVATVQTLARRQL 138
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1174
+ ++ II DE + +L RL LT TP + D + L +L
Sbjct: 139 LDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY-PRLGLTATPEREDGGRIGDLFDL 197
Query: 1175 LLPEVFD 1181
+ P V++
Sbjct: 198 IGPIVYE 204
|
Length = 442 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 21/146 (14%)
Query: 1029 GLGKTVQVMALIAYLMEFKGNYGPH--LIIVPNAVLVN-----WKSELHKWLPSVSCIYY 1081
G GKT+ L+ L G L++ P L K V+ +
Sbjct: 24 GSGKTL--AFLLPILQALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTG 81
Query: 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDW----KYIIIDEAQRM--K 1135
+ +++R + A ++LV T ++ D + K+ K +++DEA R+
Sbjct: 82 GTSLKEQARKLKKGKA----DILVGTPGRLL-DLLRRGKLKLLKNLKLLVLDEAHRLLDM 136
Query: 1136 DRESVLARDLDRYRCQRR-LLLTGTP 1160
L L R R+ LLL+ T
Sbjct: 137 GFGDDLEEILSRLPPDRQILLLSATL 162
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-07
Identities = 48/263 (18%), Positives = 73/263 (27%), Gaps = 28/263 (10%)
Query: 3 SGGGPSRNRAASTSSAAS--PSSSSSAVSTPHLGFD------SLQQQQQHQQQQQRQPFQ 54
G ++ ST S +S+ P L D + + + Q Q + QP
Sbjct: 87 VGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQP 146
Query: 55 QQILRKPDGNEAILA--YQVGSLPGLMGGGNF----ASPPGSMQPPQQSRKFFDFAQQHA 108
Q +K E + A Q P L PP PQQ + +
Sbjct: 147 QTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPP--EQPPGYP 204
Query: 109 ISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASV-LQSQQ--QAKLGMLGPASGKD 165
+ Q Q L QA Q L Q LQ Q M P
Sbjct: 205 -QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 166 QDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQ 225
Q + Q Q Q + + +QPQ Q+ + +
Sbjct: 264 QQQQ-----QPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
Query: 226 QTLGGQGMAANIIRPMQAAQHQQ 248
Q + + + + A Q+
Sbjct: 319 QF---REQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 6e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
FT QL +L+AQILA++ L +P ELL+AI
Sbjct: 3 FTPAQLELLRAQILAYKYLLARNQPVPPELLQAI 36
|
QLQ is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions. Length = 36 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
S K+ + +L+K R G + L+F++ + + + + I G T E+RE+
Sbjct: 266 SERKIAAVRGLLLKHAR-GDKTLIFASDVEHAYEIAKLFL-APGIVEAITGETPKEEREA 323
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQK 1444
+ F + L++++ G+++ AD +II P + + Q + R R K
Sbjct: 324 ILERFRTGGIK---VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGK 380
Query: 1445 REVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1496
+ + V D I+ ++ +R G T L + I G+
Sbjct: 381 EDTLALDYSLVPDDLGEEDIARRRRLFLIRKGYTYRLLTADEEGELIPNLILGIKGY 437
|
Length = 442 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 75/427 (17%), Positives = 111/427 (25%), Gaps = 59/427 (13%)
Query: 47 QQQRQPFQQQILRKPDGNEAILAYQ--VGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFA 104
QQ+ Q + P L Q G G MG G M P +
Sbjct: 58 AQQQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTA------- 110
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKL-GMLGPASG 163
Q LN Q M A + + V Q + GM+ +SG
Sbjct: 111 --------------SNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSG 156
Query: 164 KDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVS--------- 214
+ Q + + Q QA Q +G +QP Q
Sbjct: 157 QPQ---------SQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQ 207
Query: 215 DQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQAWALERNID 274
Q + P Q M + Q QQ A Q+ Q Q + +
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQ 267
Query: 275 LSQPANASLIAQLIPIMQSRIVANHKANESNM-----GAPSSPVPVSKQQVTSPTIAGEN 329
Q Q + M G P P+ Q+ P +
Sbjct: 268 GGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR---PGAVPQG 324
Query: 330 SPHANSSSDVSGQSGSAKAR-PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPS 388
+GQ + + + N QQ +
Sbjct: 325 GQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVG----QG 380
Query: 389 RQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIPS 448
Q VA+ G I Q L P + +S P Q+Q + + PQ ++PS
Sbjct: 381 GQMVAL--GYLNIQGNQGGLGANPMQQGQPGMMSSPSPVP-QVQTNQSM-PQPPQPSVPS 436
Query: 449 SDGSSAN 455
G +
Sbjct: 437 PGGPGSQ 443
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 17/174 (9%)
Query: 1271 VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF----SDLSKDF--LV 1324
+ K + K + K L + HP L ++ L + L
Sbjct: 35 CETSSSKEDIIKLLEDLTESIKLLFENLSLV---ATHPYLLIDHYMPKSLLLKEPPEHLA 91
Query: 1325 KSCGKLWILDRI--LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
++ GK +L+ + L+ VL+ S K LD++E L + L Y+R+ G + E
Sbjct: 92 ETSGKFLVLNDLINLLIRSERDLHVLIISRSVKTLDLVEALLLGKGLNYKRLSGESLYE- 150
Query: 1383 RESAIVDFNSHDSDCFIFLLS---IRAAGRGLNLQSA-DTVIIYDPDPNPKNEE 1432
E+ V +I L + + L D +I +DP +
Sbjct: 151 -ENHKVSDKKGSLSLWIHLTTSDGLTNTDSSLLSNYKFDLIISFDPSLDTSLPS 203
|
This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus. Length = 279 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1953 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.97 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.97 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.96 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.96 | |
| PTZ00110 | 545 | helicase; Provisional | 99.95 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.95 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.94 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.94 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.94 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.94 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.93 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.93 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.91 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.91 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.91 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.9 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.89 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.89 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.88 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.88 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.88 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.87 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.86 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.85 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.85 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.85 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.84 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.84 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.83 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.83 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.82 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.82 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.82 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.81 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.81 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.81 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.8 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.8 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.79 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.79 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.78 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.76 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.76 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.76 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.76 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.74 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.73 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.73 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.72 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.72 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.7 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.7 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.7 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.69 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.68 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.68 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.68 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.67 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.66 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.66 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.65 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.65 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.64 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.63 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.63 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.63 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.62 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.6 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.59 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.57 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.56 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.56 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.55 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.54 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.54 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.51 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.51 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.48 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.48 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.48 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.48 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.47 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.46 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.46 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.41 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.41 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.39 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.39 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.37 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.36 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.34 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.33 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.32 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.28 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.25 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.23 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.16 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.11 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.08 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.06 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.06 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.0 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.99 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.99 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 98.9 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.86 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.82 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 98.8 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.74 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.73 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.71 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.7 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.7 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.68 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.68 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.65 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.58 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.56 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.55 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.47 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.44 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.42 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.4 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.32 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.3 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.24 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.14 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 98.11 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.09 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.07 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.02 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.02 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.02 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.99 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.91 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.89 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.81 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.8 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.7 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 97.62 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 97.48 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.29 | |
| PF08880 | 37 | QLQ: QLQ; InterPro: IPR014978 QLQ is named after t | 97.29 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.08 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.01 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.9 | |
| PF07529 | 73 | HSA: HSA; InterPro: IPR006562 This domain of unkno | 96.63 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.52 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 96.52 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.46 | |
| smart00573 | 73 | HSA domain in helicases and associated with SANT d | 96.4 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 96.36 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.27 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.25 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.17 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.02 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.01 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 95.71 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.7 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.59 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.51 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.44 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 95.29 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.29 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.12 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.08 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.77 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 94.69 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.13 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.99 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 93.82 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 93.81 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.8 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 93.73 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 93.71 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.68 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 93.59 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 93.58 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 93.57 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 93.41 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 93.25 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 93.16 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 93.03 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.87 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 92.83 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 92.82 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.53 | |
| PRK06526 | 254 | transposase; Provisional | 92.07 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 91.74 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 91.5 | |
| PRK08181 | 269 | transposase; Validated | 91.47 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.45 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 91.29 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 91.07 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 91.06 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 90.82 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 90.7 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 90.6 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 90.29 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 90.29 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 90.2 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 90.18 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 89.97 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 89.9 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 89.68 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 89.34 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 89.28 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 89.13 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 89.03 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 88.81 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 88.73 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 88.6 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 88.38 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 88.24 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 88.02 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 88.01 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 88.0 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 87.88 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.8 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.78 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 87.5 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.26 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 87.25 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 87.11 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 87.01 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 86.94 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 86.92 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 86.91 | |
| PF13173 | 128 | AAA_14: AAA domain | 86.8 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 86.75 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 86.68 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 86.65 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 86.63 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 86.34 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 86.28 | |
| PRK08116 | 268 | hypothetical protein; Validated | 86.23 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 85.88 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 85.86 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 85.8 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 85.72 | |
| PRK08727 | 233 | hypothetical protein; Validated | 85.55 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 85.48 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 85.37 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 85.17 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 84.98 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 84.86 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 84.7 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 84.41 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 84.26 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 84.24 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 84.24 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 83.93 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 83.87 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 83.82 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 83.7 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 83.7 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 83.69 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 83.69 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.51 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.17 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 82.98 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 82.84 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 82.81 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 82.52 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 82.49 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 82.33 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 82.19 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 82.11 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 81.92 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 81.86 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 81.77 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 81.75 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 81.37 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 81.17 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 80.92 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 80.8 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 80.38 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 80.29 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 80.18 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 80.09 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 80.08 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 80.06 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-159 Score=1466.21 Aligned_cols=965 Identities=40% Similarity=0.593 Sum_probs=801.6
Q ss_pred cchHHHhhHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000169 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (1953)
Q Consensus 703 ~d~~~l~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~Q~~lr~~~~~~~~~----~ 776 (1953)
||+..+...+++++..+ .+.++++++++.+. ++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~---------~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLM---------GELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcch---------HHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999987776 48999999988652 689999999999999999999999999998653 3
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000169 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKA-----MREK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (1953)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (1953)
++++...|+|-+++..+. .+++++++++||- .|.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567888888776654 4555555554432 2333 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000169 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (1953)
Q Consensus 849 ~~~e~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v~~~k~~q~~e~~ 928 (1953)
++++++|+.++.+|+||.+||.||+|+|++|+++.| |.| |++||+||++|+.+|+..|+.++.. ...+
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~R---l~~LL~qt~~yl~sL~s~Vk~qk~~--~~~~ 345 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DNR---LSQLLSQTDSYLPSLSSVVKGQKSE--NPDA 345 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------ccH---HHHhhhhhhHHHHHHHHHHHHhhcc--cccc
Confidence 999999999999999999999999999999999986 455 8899999999999999988765530 0000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhhhHHhhhhhcccCCCCCCchhhhhhhhHHhhhhhhccCCcccCCCCCcHHHHHH
Q 000169 929 ANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVG 1008 (1953)
Q Consensus 929 ~~~~~~~~r~~gl~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~E~v~eqPs~L~ggkLRPYQleG 1008 (1953)
.+..++......+..+. + ....+..+||.++|.|.|.+.+||+++.||+|++||+.|
T Consensus 346 ------------~~~~d~~~i~~~ak~~~---------~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~G 402 (1157)
T KOG0386|consen 346 ------------NSASDISGISGSAKADV---------D--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHG 402 (1157)
T ss_pred ------------chhhhhhhhhhhhcchh---------h--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhh
Confidence 00000000000000000 0 022345789999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR 1088 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deR 1088 (1953)
|+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|+++.|
T Consensus 403 LqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R 482 (1157)
T KOG0386|consen 403 LQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQR 482 (1157)
T ss_pred hHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcccceeEEecccCCCCCHHH
Q 000169 1089 SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLKE 1167 (1953)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~a~~RLLLTGTPLQNnL~E 1167 (1953)
+.+..+ +..++|+|++|||+++++++..|.+++|.||||||+|+|||..|+++..|. +|.+.+||||||||+||++.|
T Consensus 483 ~~l~~q-ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpE 561 (1157)
T KOG0386|consen 483 SGLTKQ-QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPE 561 (1157)
T ss_pred hhHHHH-HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHH
Confidence 888765 556999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEE
Q 000169 1168 LWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 1247 (1953)
Q Consensus 1168 LwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~v 1247 (1953)
||+|||||+|.||+++..|.+||+.||++.| +..++++++.+++|+|||++|+||+|||+|++|+.+||+|++.+
T Consensus 562 LWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~v 636 (1157)
T KOG0386|consen 562 LWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDV 636 (1157)
T ss_pred HHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHh
Confidence 9999999999999999999999999999987 34568889999999999999999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC----Cccccchhhh
Q 000169 1248 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDFL 1323 (1953)
Q Consensus 1248 V~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p----~l~dls~d~L 1323 (1953)
++|.||++|+.+|+++.+.+.+.++. ......++.|+|.+|+|||||||||+|.. +......+.+
T Consensus 637 iKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 637 IKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 99999999999999999988777664 12234678999999999999999999833 3333344789
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1324 i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+|+||+|+.++|..+++.||.|+++||+||+|
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhccc
Q 000169 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1483 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gk 1483 (1953)
|+|||+|||||+||||||||++|||+.+.||.+|||||||+++|+|+++++|
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv---------------------------- 837 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV---------------------------- 837 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999885
Q ss_pred chhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHHHcCCHHHHH
Q 000169 1484 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563 (1953)
Q Consensus 1484 d~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~~~e~~~~v~~~EeLN~~lARs~eE~~ 1563 (1953)
+||||.|+++ +.+|+++|++||+||+||+++++++|+++|+.|++.++... +++++++++||++|||+++|++
T Consensus 838 ----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~--~~~v~~~~~ln~~larseeE~~ 910 (1157)
T KOG0386|consen 838 ----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEE--EEEVPDDEVLNSMLARSEEEFE 910 (1157)
T ss_pred ----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccc--cccCCcHHHHHHHHhcchHHHH
Confidence 7999999985 68999999999999999999999999999999999876543 3789999999999999999999
Q ss_pred HHhhhhhhcCcch-------hccccccchHHHhhchHHHHHHHhhhcCCCCcccccccccccCcchhhhhhhcCCCCCCC
Q 000169 1564 LFDQMDEEFGWIE-------EMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKY 1636 (1953)
Q Consensus 1564 lf~~mD~er~~~~-------~l~~~~elP~~l~~~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~ 1636 (1953)
+|.+||.+|.|.+ +++.+.++|+|+...+.+.+..-+ ... ......||.+.||+
T Consensus 911 ~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~----~~~---------------~~~~~~rg~r~Rke 971 (1157)
T KOG0386|consen 911 LFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE----EEE---------------EEKILGRGRRARKE 971 (1157)
T ss_pred HHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh----hhh---------------hhccccccccccce
Confidence 9999999997743 678899999999877666554221 000 01112466777777
Q ss_pred CCCcccCccccccccccccccCCCCcccc--ccCCCCcccccCCCCCCCCCCCCCCcccCCCccCCCccccCcccccccc
Q 000169 1637 PNYKEVDDEIGEYSEASSDERNGYPVQEE--EGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNN 1714 (1953)
Q Consensus 1637 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1714 (1953)
-.|+.- ..+.-|-.+.++....+...++ .|......|+.+.. . +. ....+--| +..
T Consensus 972 v~y~d~-~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~-----~~~~~~~~---------~~~ 1029 (1157)
T KOG0386|consen 972 VVYSDR-LTEMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLS-Q------KK-----RKLRPRSP---------KQA 1029 (1157)
T ss_pred eecccc-cchhhhhhhccccccccchhhhhccCCCccccccccch-h------hc-----ccccCCCh---------HHH
Confidence 777622 1112222121211111100000 01000011111100 0 00 00000011 111
Q ss_pred hhhhcccCcccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------C
Q 000169 1715 HVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S 1783 (1953)
Q Consensus 1715 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~ 1783 (1953)
..+-.+----.++++|.++..| +++|++-+|+||+++.+|..+.| ++..|+.+.|..-.++..|+.. +
T Consensus 1030 ~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e 1108 (1157)
T KOG0386|consen 1030 LKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNEE 1108 (1157)
T ss_pred HHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhccC
Confidence 1111111112334899999999 99999999999999999999987 8899999999999999988876 8
Q ss_pred CCccccCCCCccccccchhhhccccccc
Q 000169 1784 GSWTHDRDEGEDEQVLQPKIKRKRSIRV 1811 (1953)
Q Consensus 1784 ~s~~~~~~~~e~~~~~q~~~~~krs~~~ 1811 (1953)
|||+. ||..+||.+++-++..-.
T Consensus 1109 gs~~y-----~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1109 GSRVY-----EDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred Cceec-----hhHHHHHHHHhhhHHHHh
Confidence 99998 999999999988776543
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-110 Score=1005.78 Aligned_cols=511 Identities=43% Similarity=0.717 Sum_probs=454.5
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
....+|..+.+|.|||||++||+||+++|.|+.|||||||||||||+|+|+++.|+...++..||+|||||.|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
||.+|+|++.+++|+|.+++|..+.......+.|+||||||++++++.+.|.++.|.|+||||||||||..|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 99999999999999999999998887777788999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|.+.+||||||||+|||+.|||+|||||+|++|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 01112578999999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
+|||+|.+|++.||||.+.+++|.||..|+..|+.+.......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987754333222110 0245799999999999999
Q ss_pred CCCCCCCc---cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1308 P~L~~p~l---~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
||||.... .....+.++..|||+.+|+++|++|++.||||||||||+.++|||++||-+++|.||||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 99987532 344567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (1953)
..|+.||.+++..|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|+||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccccc-ccCCHHHHHHHHHHHHhhhhhh-hccc
Q 000169 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1542 (1953)
Q Consensus 1465 EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD-~kst~eERr~~Le~LLe~ee~~-~e~~ 1542 (1953)
.++||++|++++ ..|+.++..||+.|... .++.. .-...+..|+..+... .+..
T Consensus 598 ----------------------entVEe~IveRA-~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVERA-AAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHHH-HHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 379999999985 77999999999999543 23332 2233455666544322 2333
Q ss_pred cCCCCHHHHHHHHcCCHH
Q 000169 1543 HDVPSLQEVNRMIARSED 1560 (1953)
Q Consensus 1543 ~~v~~~EeLN~~lARs~e 1560 (1953)
....++ +|..+|.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 333344 99999999874
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-100 Score=956.97 Aligned_cols=508 Identities=40% Similarity=0.667 Sum_probs=447.5
Q ss_pred hhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 987 E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
..+..+|..+.|.+||+||++||+||+..|.++.|||||||||||||||+|++|.+|+......||||||||.+++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998877999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHHhh------ccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1067 ~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~------~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
.||..|+ .+++++|+|....|.-+...++.. .+|+++||||+++++|...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 999999999999887776555432 369999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
++..|..|...+||++||||+||++.|||+||+||+|+.|.++..|...|.. ....-++.|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987631 112247889
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
|.+|+||||||+|+||++.||+|.|.++.|.||+.|+.+|++|+..+.-.+..+ .. ....+|+|++|.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG---------~~---g~~~~lLNimmE 644 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKG---------AK---GSTPSLLNIMME 644 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc---------CC---CCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999987643222111 00 112579999999
Q ss_pred HHHhcCCCCCCCCCcccc-----------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1301 LRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l~dl-----------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
|+||||||||+.+..+.+ ....++.+|||+.+|++||.+|++.||||||||||+.|+|||++||..++|
T Consensus 645 LkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 645 LKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 999999999987653322 234578999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
+|-||||+++.+-|+.+|+.||+++++.|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.|
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCH--HHHHHH
Q 000169 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRMT 1527 (1953)
Q Consensus 1450 yrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~--eERr~~ 1527 (1953)
|||+| .+|||+-|+++ ++.|+-++..||+.+.++...+. .-....
T Consensus 805 YRLVT--------------------------------k~TvEeEilER-Ak~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E 851 (1373)
T KOG0384|consen 805 YRLVT--------------------------------KNTVEEEILER-AKLKMVLDHAVIQRMDTKGKTSKSNPFSKEE 851 (1373)
T ss_pred EEEec--------------------------------CCchHHHHHHH-HHHHhhhHHHHHHhhccccccCCCCCCCHHH
Confidence 99987 48999999998 58899999999999877433222 222556
Q ss_pred HHHHHhhhh--hhhc--cccCCCCHHHHHHHHcCCH
Q 000169 1528 LETLLHDEE--RYQE--TVHDVPSLQEVNRMIARSE 1559 (1953)
Q Consensus 1528 Le~LLe~ee--~~~e--~~~~v~~~EeLN~~lARs~ 1559 (1953)
|.+||.-++ -+.+ ........++|+++|.|.+
T Consensus 852 LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 852 LSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 788877432 2222 2233445567888887754
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-93 Score=852.29 Aligned_cols=465 Identities=40% Similarity=0.727 Sum_probs=415.9
Q ss_pred hhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 987 E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
+....||.+|. ++|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.+++.||.
T Consensus 555 t~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 555 TRTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred eeeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 34568999996 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHH------hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEV------AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1067 ~Ef~KwaPslkVvvy~Gs~deRk~l~~qei------~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
.||.+|+|.++|+.|.|+..+|+.+..... ....|+||||||+.+..|...|.+++|.|+|+|||+.||...|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 999999999999999999999976654222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|++.+.|.+||.+.++........ ++ ...+.||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~t----ln----eqqL~RL 785 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTT----LN----EQQLQRL 785 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCC----cC----HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887654222111 11 2247899
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
|.+|.||||||.|+||..+|..|+++.|+|.||..|..+|+.|..... ...+.+++|+
T Consensus 786 H~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQ 843 (1185)
T KOG0388|consen 786 HAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQ 843 (1185)
T ss_pred HHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865321 1233458999
Q ss_pred HHHhcCCCCCCCCCc-----------------------------------------------------------------
Q 000169 1301 LRKTCNHPLLNYPYF----------------------------------------------------------------- 1315 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l----------------------------------------------------------------- 1315 (1953)
|||+||||.||....
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 999999997631000
Q ss_pred -----------ccc------------------------------------------------------------------
Q 000169 1316 -----------SDL------------------------------------------------------------------ 1318 (1953)
Q Consensus 1316 -----------~dl------------------------------------------------------------------ 1318 (1953)
.+.
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 000
Q ss_pred ---------------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000169 1319 ---------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (1953)
Q Consensus 1319 ---------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeR 1383 (1953)
..+..+..|||+..|+.+|++|++.|||||+|+|||.|+|+|++||..++|.|+||||+.+..+|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 00112556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhh
Q 000169 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463 (1953)
Q Consensus 1384 qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q 1463 (1953)
..++.+|.. +++|||||||+|||+||||++||||||||++|||+.+.||++||||+||++.|+||+|++
T Consensus 1084 rd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~--------- 1152 (1185)
T KOG0388|consen 1084 RDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT--------- 1152 (1185)
T ss_pred HHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc---------
Confidence 999999996 889999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccc
Q 000169 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1517 (1953)
Q Consensus 1464 ~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~ 1517 (1953)
.++|||+|+++ +..|..+...|+..|.|-.
T Consensus 1153 -----------------------rgTvEEk~l~r-A~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 -----------------------RGTVEEKVLER-ANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred -----------------------cccHHHHHHHH-hhhHHHHHHHHHcCCcccC
Confidence 48999999997 4789999999999888753
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-93 Score=875.87 Aligned_cols=485 Identities=42% Similarity=0.736 Sum_probs=427.6
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
..|.+|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||+
T Consensus 607 pvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 4566664 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1071 KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+|||+++++.|+|+..+|+.....+.....|+|+||||..+..+...|...+|.|+||||||+|||..+.+|++|..|++
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfns 765 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNS 765 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccch
Confidence 99999999999999999988887777889999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.+||||||||++|++.|||+||+||+|.+|.+.+.|..||..|+...-... .+.....+.|||++|+||+||
T Consensus 766 qrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 766 QRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred hheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999986542211 122234678999999999999
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
|+|.||+++||.|.|++|+|.||..|+.+|+.+..... .+..+. ...+-++.|++|+||||||||-|
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999998754321 111111 12356789999999999999966
Q ss_pred CCCC----------------------------------------------------------------------------
Q 000169 1311 NYPY---------------------------------------------------------------------------- 1314 (1953)
Q Consensus 1311 ~~p~---------------------------------------------------------------------------- 1314 (1953)
|.+.
T Consensus 905 fEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~p 984 (1958)
T KOG0391|consen 905 FEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIP 984 (1958)
T ss_pred CCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCc
Confidence 3100
Q ss_pred ------c-----------------------------------------------c-------------------------
Q 000169 1315 ------F-----------------------------------------------S------------------------- 1316 (1953)
Q Consensus 1315 ------l-----------------------------------------------~------------------------- 1316 (1953)
| +
T Consensus 985 t~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~s 1064 (1958)
T KOG0391|consen 985 TFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVS 1064 (1958)
T ss_pred cccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecc
Confidence 0 0
Q ss_pred ------------------------------c-------------------------------c-----------------
Q 000169 1317 ------------------------------D-------------------------------L----------------- 1318 (1953)
Q Consensus 1317 ------------------------------d-------------------------------l----------------- 1318 (1953)
+ +
T Consensus 1065 v~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~ 1144 (1958)
T KOG0391|consen 1065 VPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYL 1144 (1958)
T ss_pred ccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhh
Confidence 0 0
Q ss_pred -c-----hhh----------------------------------------------------------------------
Q 000169 1319 -S-----KDF---------------------------------------------------------------------- 1322 (1953)
Q Consensus 1319 -s-----~d~---------------------------------------------------------------------- 1322 (1953)
. .+.
T Consensus 1145 ~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~ 1224 (1958)
T KOG0391|consen 1145 VNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRIL 1224 (1958)
T ss_pred ccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHH
Confidence 0 000
Q ss_pred ------------------------------hhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEE
Q 000169 1323 ------------------------------LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (1953)
Q Consensus 1323 ------------------------------Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikyl 1372 (1953)
+--.|||+..|.-+|..|+..|||||||+||+.|+|+|+.||.++|+.|+
T Consensus 1225 ~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~ 1304 (1958)
T KOG0391|consen 1225 RQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYV 1304 (1958)
T ss_pred HHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEE
Confidence 01136899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1373 RLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
||||+|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||.||||.++.||++|+|||||+++|+||||
T Consensus 1305 RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1305 RLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred EecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHH
Q 000169 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532 (1953)
Q Consensus 1453 vTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LL 1532 (1953)
++ ..+||+.|+++ +..|.-+++.+|+.|.| +++--+...+.+|+
T Consensus 1384 IS--------------------------------e~TIEeniLkk-anqKr~L~evaiqggdf---Tt~ff~q~ti~dLF 1427 (1958)
T KOG0391|consen 1384 IS--------------------------------ERTIEENILKK-ANQKRMLDEVAIQGGDF---TTAFFKQRTIRDLF 1427 (1958)
T ss_pred ec--------------------------------cchHHHHHHhh-hhHHHHHHHHhhccCCc---cHHHHhhhhHHHHh
Confidence 76 26899999987 46788999999999998 44444555556666
Q ss_pred hh
Q 000169 1533 HD 1534 (1953)
Q Consensus 1533 e~ 1534 (1953)
.-
T Consensus 1428 d~ 1429 (1958)
T KOG0391|consen 1428 DV 1429 (1958)
T ss_pred cC
Confidence 53
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-88 Score=878.67 Aligned_cols=510 Identities=41% Similarity=0.715 Sum_probs=446.5
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
.+..+|..+. ++|||||+.||+||+.++.++.|||||||||||||+|+|+++.++....+..+|+|||||.+++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3456898887 699999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
||.+|+|.+.+++|+|....|..+.........|+||||||+++.++...|.++.|++|||||||++||..+++++++..
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~ 316 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999988776655445567899999999999999999999999999999999999999999999999
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 317 L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999752110 1123577899999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
++||+|.+|...||++.+.+++|.||+.|+.+|+.+.......+. .. .....+++.+++||+||+|
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnH 447 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNH 447 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988654211110 00 1234678899999999999
Q ss_pred CCCCCCCc---cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1308 P~L~~p~l---~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
|+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|.
T Consensus 448 P~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq 527 (1033)
T PLN03142 448 PYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 527 (1033)
T ss_pred HHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 99975432 223456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (1953)
.+|+.||.+++..+||||||+|||+||||+.||+||+||+||||..++||+||+|||||+++|.||+|++
T Consensus 528 ~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt---------- 597 (1033)
T PLN03142 528 ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT---------- 597 (1033)
T ss_pred HHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe----------
Confidence 9999999888888999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhh-hhcccc
Q 000169 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVH 1543 (1953)
Q Consensus 1465 EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~-~~e~~~ 1543 (1953)
.+|||++|+++ +..|+.++..||+.|.+..... .....|.+|+.-... .-....
T Consensus 598 ----------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~ 652 (1033)
T PLN03142 598 ----------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKD 652 (1033)
T ss_pred ----------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccC
Confidence 38999999996 6889999999999998764321 113346667654322 112223
Q ss_pred CCCCHHHHHHHHcCCHHHH
Q 000169 1544 DVPSLQEVNRMIARSEDEV 1562 (1953)
Q Consensus 1544 ~v~~~EeLN~~lARs~eE~ 1562 (1953)
...++++|+.+|+|+++..
T Consensus 653 ~~~~~~did~il~~~~~~~ 671 (1033)
T PLN03142 653 STITDEDIDRIIAKGEEAT 671 (1033)
T ss_pred CCCCHHHHHHHHHhcHHHH
Confidence 4578999999999998755
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-88 Score=825.52 Aligned_cols=488 Identities=41% Similarity=0.660 Sum_probs=413.5
Q ss_pred hccCCcccC-CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 989 v~eqPs~L~-ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
+..||..|. +.+|+|||+.||+||.-+|..+++||||||||||||+|+|++++||.+ .+..||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 566888885 459999999999999999999999999999999999999999999997 677999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHH-hhccccEEEEeHHHHH---hhhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei-~~~~fdVVITTYEsL~---kd~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
||.+|||.++|..|+|+.++|+.+...-. ...+|+|+||||..+. .|+.+|...+|+|+|.||||.+||..|.+|+
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 99999999999999999999988764322 2348999999999886 4678899999999999999999999999999
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~-k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.|..+++.+||+|||||+||+|.|||+||.|++|.+|.+. ..+..-|..--... .+.+...+..+ .|.|-..
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALLSQE----RISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999765 56666665321111 11111222222 4788999
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
++.||+|||+|.+|++.||+|..++.+|.|+..|+.+|..+........ .....+ ... .+ -+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~------~~~~~n----s~~-~~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL------NEVSKN----SEL-KS-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc------cccccc----ccc-cc-chHHHHHH
Confidence 9999999999999999999999999999999999999998765421110 011111 001 11 46899999
Q ss_pred HhcCCCCCCCCCcccc-------------------------------------------------chhhhhhcccHHHHH
Q 000169 1303 KTCNHPLLNYPYFSDL-------------------------------------------------SKDFLVKSCGKLWIL 1333 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dl-------------------------------------------------s~d~Li~~SGKLelL 1333 (1953)
|++|||.|+...+.+. -.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 9999999964332210 123357789999999
Q ss_pred HHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCC
Q 000169 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1334 drIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
..||++++..|+|||||||||.|+|||+.+|.-+++.|+||||+|...+|+.+|++||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999996 77899999999999999999
Q ss_pred ccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHH
Q 000169 1414 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1493 (1953)
Q Consensus 1414 QaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~ 1493 (1953)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhh
Q 000169 1494 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1534 (1953)
Q Consensus 1494 IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ 1534 (1953)
|+. |++.|+.++..+...++-.. .+.+..+..||+.
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~~~----~e~~~~v~~lL~~ 929 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKGVE----DEGEKTVGKLLET 929 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccchh----hhhhhHHHHHHHH
Confidence 998 78999999888887665322 2223345555554
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-85 Score=794.83 Aligned_cols=469 Identities=33% Similarity=0.585 Sum_probs=404.0
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
..|..+. ..|+|||.+||+||+++|.++.||||+||||||||||+|+||+.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 4566554 389999999999999999999999999999999999999999999876566799999999999999999999
Q ss_pred HHCCCCeEEEEecchhh-Hh---------HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1071 KWLPSVSCIYYVGAKDQ-RS---------RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1071 KwaPslkVvvy~Gs~de-Rk---------~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
+|+|.++|.+|+++... |. ...-........+|+||||+.++.....+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999997662 10 000011224456899999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
++.+++.+++.+|++|||||+||++.|||+||+|+.|+.+++...|.+.|..|+..++...... ........+...|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~---~qv~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASP---RQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887655443 2233344556789
Q ss_pred HHHhhHHHHHHHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
+.++.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+ ..+... -..++..+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--------~~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--------NKILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--------HHHHcC-------CccceechH
Confidence 999999999999999999 9999999999999999999999988654211 111110 011233467
Q ss_pred HHHHhcCCCCCCCCC--ccccchh--hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH-HcCCeEEee
Q 000169 1300 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1374 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~--l~dls~d--~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~-~rGikylRL 1374 (1953)
-||++||||.++... ......+ -.+..|||+++|..+|..++..|+|||+|+|...|+|||+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997663 1111122 46789999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1375 DGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
||.|+...|..+|++||. +..++||||+|+|||+||||+.||.||||||+|||..+.||..|||||||+|.|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999997 6678999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1455 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1455 VEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
.++|||.|+-+ |=+|..+.+.++.-
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILKN 681 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhcC
Confidence 36788888765 56777777777743
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-83 Score=793.05 Aligned_cols=495 Identities=33% Similarity=0.564 Sum_probs=426.2
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~Q 1064 (1953)
..|.-+. .+||.||++||+|+..++..+++|||||+||||||+|+|++++.-...+. ..-|.|||||.+|+.+
T Consensus 967 ~Ip~pI~-a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 967 KIPVPIS-AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred ccccchh-HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 3444443 48999999999999999999999999999999999999999986554331 3358999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHH
Q 000169 1065 WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1065 W~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|+.|+.+|+|-++++.|.|.+..|..++.+ ..+.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q---~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQ---YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhh---ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHH
Confidence 999999999999999999999999877543 45679999999999999999999999999999999999999999999
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
++.+++.+||+|||||+||++.|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+.....+..||+.+
T Consensus 1123 vkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1123 VKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987644332 2356678888999999999
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
-||+|||+|.||+++||||+....+|+|++.|+++|+.+.......++...+........ ....+...+..|||.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKL 1274 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKL 1274 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998776333322221111111110 145778889999999
Q ss_pred cCCCCCCCCCc-cccc---------hhhh--hhcccHHHHHHHHHHHHH--------------hcCCeeEEeechhHHHH
Q 000169 1305 CNHPLLNYPYF-SDLS---------KDFL--VKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLD 1358 (1953)
Q Consensus 1305 CNHP~L~~p~l-~dls---------~d~L--i~~SGKLelLdrIL~kLk--------------atGhKVLIFSQft~~LD 1358 (1953)
||||.+..... +++. ...+ +..++|+.+|..||.++- ..+||||||||+..++|
T Consensus 1275 cnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlD 1354 (1549)
T KOG0392|consen 1275 CNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLD 1354 (1549)
T ss_pred cCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHH
Confidence 99999875421 1110 1112 678999999999999882 25799999999999999
Q ss_pred HHHHHHHHc---CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhh
Q 000169 1359 ILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435 (1953)
Q Consensus 1359 ILed~L~~r---GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAi 1435 (1953)
++++-|-.. .+.|.||||++++.+|.+++++||+ |..+.|+|++|.+||+||||++||||||++.||||..++||+
T Consensus 1355 lVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAM 1433 (1549)
T KOG0392|consen 1355 LVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAM 1433 (1549)
T ss_pred HHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHH
Confidence 999888655 5669999999999999999999997 777899999999999999999999999999999999999999
Q ss_pred hcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccc
Q 000169 1436 ARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1515 (1953)
Q Consensus 1436 GRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkF 1515 (1953)
|||||||||+.|.||||++ .|++||+|+. ++++|.++++.||++..-
T Consensus 1434 DRAHRIGQKrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNa 1480 (1549)
T KOG0392|consen 1434 DRAHRIGQKRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNA 1480 (1549)
T ss_pred HHHHhhcCceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccc
Confidence 9999999999999999976 4899999997 899999999999999887
Q ss_pred cccCCHHHHHHHHHHH
Q 000169 1516 DQRTTHEERRMTLETL 1531 (1953)
Q Consensus 1516 D~kst~eERr~~Le~L 1531 (1953)
+..+...+....|...
T Consensus 1481 sl~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1481 SLETMDTDQLLDLFTV 1496 (1549)
T ss_pred cccccCHHHHHHHhcc
Confidence 7777777766655553
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=651.02 Aligned_cols=435 Identities=30% Similarity=0.456 Sum_probs=364.2
Q ss_pred CCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHH
Q 000169 998 AGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~----GP~LIVVP~SLL~QW~~ 1067 (1953)
...|||||.+|+.||+.... +..|||+||+||+|||+++|++|+.++...+.+ ...|||||.+|+.||.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 45899999999999997642 456789999999999999999999999866653 45799999999999999
Q ss_pred HHHHHCC--CCeEEEEecchhhH----hHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHH
Q 000169 1068 ELHKWLP--SVSCIYYVGAKDQR----SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141 (1953)
Q Consensus 1068 Ef~KwaP--slkVvvy~Gs~deR----k~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKl 1141 (1953)
||.+|.. .+....+.|..+.. ..++......-..-|+|.+|+.+.++...+....+++||+||||++||..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999986 57777777776641 11111112233456999999999999899999999999999999999999999
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
+++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..|+.........+.+... + .-+..|.
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~---~rl~eL~ 471 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-E---ERLQELR 471 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-H---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876554433322111 2 2278999
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
.++..|++||+-..+.++||.+.+++|.|.+++.|..+|+.+.... .. .. ....-+..+..|
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L 533 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKL 533 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHH
Confidence 9999999999999999999999999999999999999999887642 10 00 001134567889
Q ss_pred HHhcCCCCCCC-CCcc-----ccc-----------h-hhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHH
Q 000169 1302 RKTCNHPLLNY-PYFS-----DLS-----------K-DFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEE 1362 (1953)
Q Consensus 1302 RKiCNHP~L~~-p~l~-----dls-----------~-d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed 1362 (1953)
+++||||.|.. .... ... . ..-...++|+..|+.+|...++ ...++++.++++.++++++.
T Consensus 534 ~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~ 613 (776)
T KOG0390|consen 534 KKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQ 613 (776)
T ss_pred HHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHH
Confidence 99999999863 1000 000 0 0112347999999999966543 34577777899999999999
Q ss_pred HHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1363 ~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
.++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+.+.||++||||.|
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeh
Q 000169 1443 QKREVKVIYMEA 1454 (1953)
Q Consensus 1443 QKKeV~VyrLvT 1454 (1953)
|+|.|+||+|++
T Consensus 694 QKk~v~iYrLla 705 (776)
T KOG0390|consen 694 QKKPVYIYRLLA 705 (776)
T ss_pred CcceEEEEEeec
Confidence 999999999987
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=647.12 Aligned_cols=469 Identities=40% Similarity=0.640 Sum_probs=400.6
Q ss_pred CCCCCcHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHCC
Q 000169 997 RAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~SLL~QW~~Ef~KwaP 1074 (1953)
..++|++||.+|+.|+. .++....+|||||+||+|||+|+|+++.++.+.... .+|+|||||.+++.||.+||.+|+|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 34689999999999999 899999999999999999999999999986665444 5899999999999999999999999
Q ss_pred CCe-EEEEecchhh----HhHHHHHHHhh---ccccEEEEeHHHHHh---hhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1075 SVS-CIYYVGAKDQ----RSRLFSQEVAA---LKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1075 slk-Vvvy~Gs~de----Rk~l~~qei~~---~~fdVVITTYEsL~k---d~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
.++ +.+++|.... +..+ ...... ..|+|++|||+.+.. +...+..+.|+++|+||||++||..+..++
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREAL-RDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred cccceeeeeCCcccccHHHHHH-HHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 999 9999998753 2222 111111 238999999999999 899999999999999999999999999999
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHh-hhcccccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLn-FLlP~iF~-S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..|......... .+.....+.+|+
T Consensus 494 ~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 566 (866)
T COG0553 494 ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELLR 566 (866)
T ss_pred HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999 559999999999877643321 122233455699
Q ss_pred HHhhHHHHHHHHhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHcc---CcccCchhHHhhhhcChhhHHH--HHHHH
Q 000169 1222 QILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKTL 1294 (1953)
Q Consensus 1222 klLrPFmLRRlKkD--VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~---~l~ld~~~ek~~l~kn~~~~ak--~~~sL 1294 (1953)
.++.||++||++.+ +..+||++.+.++.|.|+..|..+|..+.... ...+.... ......... ....+
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 641 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLE-----KADSDENRIGDSELNI 641 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccccccccchhhHH
Confidence 99999999999999 89999999999999999999999999886622 11100000 000000000 24567
Q ss_pred HHHHHHHHHhcCCCCCCCCC-cc---------------ccchhhhhhcc-cHHHHHHHHH-HHHHhcCC--eeEEeechh
Q 000169 1295 NNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTMT 1354 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~-l~---------------dls~d~Li~~S-GKLelLdrIL-~kLkatGh--KVLIFSQft 1354 (1953)
.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|+
T Consensus 642 l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t 721 (866)
T COG0553 642 LALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFT 721 (866)
T ss_pred HHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcH
Confidence 88899999999999998765 11 11123456778 9999999999 89999999 999999999
Q ss_pred HHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhh
Q 000169 1355 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434 (1953)
Q Consensus 1355 ~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QA 1434 (1953)
.++++|+.+|...++.|+++||+++...|..++++|+++ ..++|||+|++|||.||||+.|++||+||+||||..+.||
T Consensus 722 ~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 722 PVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHH
Confidence 999999999999999999999999999999999999985 6789999999999999999999999999999999999999
Q ss_pred hhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1435 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1435 iGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
++|+|||||+++|.||++++ .++|||+|+. ++..|..+...++++
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 99999999999999999976 4899999998 578899999999986
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=606.39 Aligned_cols=478 Identities=26% Similarity=0.399 Sum_probs=380.3
Q ss_pred hhhhccCCcccCCCCCcHHHHHHHHHHHHhhc---------CCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000169 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYN---------NKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (1953)
Q Consensus 986 ~E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~---------n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LI 1055 (1953)
.+.....|..|.. +|+|||..||+||+.... .+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766654 899999999999997542 578999999999999999999986654 34556779999
Q ss_pred EechHHHHHHHHHHHHHCCCC------eEEEEe--cchhhHhHHHHHHHhhccccEEEEeHHHHHhh-------------
Q 000169 1056 IVPNAVLVNWKSELHKWLPSV------SCIYYV--GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------------- 1114 (1953)
Q Consensus 1056 VVP~SLL~QW~~Ef~KwaPsl------kVvvy~--Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------------- 1114 (1953)
|||.+++.||.+||.+|.+++ .|..+. ..+..|...+.. ....-.|+|+-|+.++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~--W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR--WQEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHH--HHhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 999999999999999999862 222221 223344333332 233448999999998643
Q ss_pred --hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000169 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (1953)
Q Consensus 1115 --~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k 1192 (1953)
...|..-..|+||+||||-|||..+.+++++..+.+++||+|||||+||||.|++++++|+.|+++++...|...|..
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN 891 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN 891 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC
Confidence 122344478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000169 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (1953)
Q Consensus 1193 Pf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld 1272 (1953)
|+.++...+....+... .-.-.+.|+.+|..|+-|+--.-+.++||||.++||.+.||+.|..||.++..+.... .
T Consensus 892 pI~nGq~~dST~~DVr~---Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G 967 (1567)
T KOG1015|consen 892 PIQNGQCADSTMVDVRV---MKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-G 967 (1567)
T ss_pred ccccCccCCCcHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-C
Confidence 99988665544322211 1112466899999999999998899999999999999999999999999988743221 1
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC------------------CCc---c---------------
Q 000169 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY------------------PYF---S--------------- 1316 (1953)
Q Consensus 1273 ~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~------------------p~l---~--------------- 1316 (1953)
...+ +. ...-+.|+....-|++|++||+... .++ .
T Consensus 968 ~d~e-----g~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~ 1038 (1567)
T KOG1015|consen 968 NDSE-----GG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKK 1038 (1567)
T ss_pred Cccc-----cc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhc
Confidence 1111 00 1123566777788999999998610 000 0
Q ss_pred ---------cc------------------------------------ch------------------------h------
Q 000169 1317 ---------DL------------------------------------SK------------------------D------ 1321 (1953)
Q Consensus 1317 ---------dl------------------------------------s~------------------------d------ 1321 (1953)
+. .. +
T Consensus 1039 ~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d 1118 (1567)
T KOG1015|consen 1039 KKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEAD 1118 (1567)
T ss_pred ccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhh
Confidence 00 00 0
Q ss_pred -hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----------------------cCCeEEeecCCC
Q 000169 1322 -FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTT 1378 (1953)
Q Consensus 1322 -~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----------------------rGikylRLDGsT 1378 (1953)
..+..|||+-+|.+||..+.+-|.|+|||+|....+|+|++||.. +|..|.||||++
T Consensus 1119 ~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst 1198 (1567)
T KOG1015|consen 1119 AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGST 1198 (1567)
T ss_pred hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcc
Confidence 124568999999999999999999999999999999999999962 367799999999
Q ss_pred CHHHHHHHHHHhhcCC-CCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhh
Q 000169 1379 SLEDRESAIVDFNSHD-SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 1457 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~d-s~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEE 1457 (1953)
....|.++.++||++. -..++|||||+||++||||-+|+.|||||-.|||..+.|+|-|++|.||+|+|+||+|++
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA--- 1275 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA--- 1275 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh---
Confidence 9999999999999864 457899999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1458 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1458 kI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
.+++|++|++| +-.|..++-.|++.
T Consensus 1276 -----------------------------qGTmEeKIYkR-QVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1276 -----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDE 1300 (1567)
T ss_pred -----------------------------cccHHHHHHHH-HHhHhhhhhhhhhH
Confidence 36677777665 45566666666654
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-63 Score=575.13 Aligned_cols=465 Identities=32% Similarity=0.448 Sum_probs=377.7
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
+-.+||..|. ..|-|||++||.|+..... .-.|||||||||.|||||+|+|++. .....|+|||||.-.+.||.
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWK 247 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHH
Confidence 3457998876 4799999999999998765 5578999999999999999999875 23446899999999999999
Q ss_pred HHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh-----------------hhcccccCccEEEc
Q 000169 1067 SELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIII 1128 (1953)
Q Consensus 1067 ~Ef~Kwa-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd-----------------~s~L~kikWd~VII 1128 (1953)
+||.+++ +.+++++|+|...... ......||||+|||..+-.. .+.|..++|..||+
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 9999998 4689999999765432 12356899999999887432 45688899999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh-------------------------
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------------- 1183 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------------- 1183 (1953)
||||.||+..|...+++..+.+.+||+|||||+||++.|||+|+.||....|.-+
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h 402 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSH 402 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccc
Confidence 9999999999999999999999999999999999999999999999977665310
Q ss_pred ------HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc--CCCCceEEEEEeccCHH
Q 000169 1184 ------KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAI 1255 (1953)
Q Consensus 1184 ------k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVek--dLPpKvE~vV~c~MSa~ 1255 (1953)
-.|...+.+|+...|.... ........|.++..+|+||+|-+-.. .|||.+..+..=.++..
T Consensus 403 ~~m~h~~~~n~~mlk~IqkfG~eGp----------Gk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 403 NIMQHTCFFNHFMLKPIQKFGVEGP----------GKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred hhhhhhhhhcccccccchhhcccCc----------hHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 0122223345544433211 11223467889999999999876444 48999999888889999
Q ss_pred HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCC-----------------cccc
Q 000169 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDL 1318 (1953)
Q Consensus 1256 Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~-----------------l~dl 1318 (1953)
+..+|+.+........+...+...+.. .|..+...+.+||+++.||+|..-. ..+.
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvlN-------NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVLN-------NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDP 545 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhhh-------hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCCh
Confidence 999999886554444444333333322 3788899999999999999984210 0000
Q ss_pred chh-----------------------------------------------------------------hhhhcccHHHHH
Q 000169 1319 SKD-----------------------------------------------------------------FLVKSCGKLWIL 1333 (1953)
Q Consensus 1319 s~d-----------------------------------------------------------------~Li~~SGKLelL 1333 (1953)
..+ .-+..|.|+++|
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEAL 625 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHH
Confidence 000 025567899999
Q ss_pred HHHHHHHHhcC--CeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccccccc
Q 000169 1334 DRILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (1953)
Q Consensus 1334 drIL~kLkatG--hKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGL 1411 (1953)
.+-|..+++.+ -|.|||+|||.++|+|.-.|...|+.++.|.|+|++..|...|+.|.+ +.+|+|||+|.+|||..|
T Consensus 626 ~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 626 VEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred HHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEe
Confidence 98888886655 479999999999999999999999999999999999999999999986 889999999999999999
Q ss_pred CCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHH
Q 000169 1412 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIE 1491 (1953)
Q Consensus 1412 NLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIE 1491 (1953)
||+.|++|+++||||||....||++|+|||||.++|+|++|+. .+|||
T Consensus 705 NLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE 752 (791)
T KOG1002|consen 705 NLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIE 752 (791)
T ss_pred eechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHH
Confidence 9999999999999999999999999999999999999999963 37999
Q ss_pred HHHHHHHHHhhhHHHHHHHhcc
Q 000169 1492 GLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1492 E~IlerLq~~KldIddkVIqAG 1513 (1953)
++|++ ++++|.+|....|+..
T Consensus 753 ~kIie-LQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 753 EKIIE-LQEKKANMIHATIGQD 773 (791)
T ss_pred HHHHH-HHHHHhhhhhhhcCCc
Confidence 99998 8899999888888653
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=569.42 Aligned_cols=467 Identities=26% Similarity=0.414 Sum_probs=380.6
Q ss_pred hccCCcccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000169 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (1953)
Q Consensus 989 v~eqPs~L~ggkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S 1060 (1953)
+++.|..+. ..|.|||..|+.||+.... .+.||||||+||+|||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 456777764 4899999999999998755 457899999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh----------hhhcccccCccEEEc
Q 000169 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIII 1128 (1953)
Q Consensus 1061 LL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k----------d~s~L~kikWd~VII 1128 (1953)
++.||..||.+... .+.|++|+|+.. +.+. ......||||||||..+.+ ....|..+.|.+||+
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~--r~i~--~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK--REIS--AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc--ccCC--HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 99999999998874 489999999874 1221 2335689999999998876 245688899999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
||||.++|+.++.+.++..+.+.+||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-...
T Consensus 470 DEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----------- 538 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----------- 538 (901)
T ss_pred hhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999986542221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhc-----CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCc----------
Q 000169 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP---------- 1273 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrPFmLRRlKkDVek-----dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~---------- 1273 (1953)
..||.-+..+.||||+|..+.. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 539 --------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~ 610 (901)
T KOG4439|consen 539 --------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN 610 (901)
T ss_pred --------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3467778899999999998766 79999999999999999999997653321110000
Q ss_pred --h--h-----HH----------hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----------------
Q 000169 1274 --E--D-----EK----------RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD----------------- 1317 (1953)
Q Consensus 1274 --~--~-----ek----------~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d----------------- 1317 (1953)
. . .. ...+....+.......++-.+++||++|+||-+....+..
T Consensus 611 ~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 611 DGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred ccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 0 0 00 0000001111233455778899999999999542211000
Q ss_pred --------------cch--------------hhhhhcccHHHHHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcC
Q 000169 1318 --------------LSK--------------DFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (1953)
Q Consensus 1318 --------------ls~--------------d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rG 1368 (1953)
... -...+.|.|+..+..+|..+ ....+|++|.+||+.++++++..|...|
T Consensus 691 ~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g 770 (901)
T KOG4439|consen 691 EDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG 770 (901)
T ss_pred hhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC
Confidence 000 01234678888888888877 6678999999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1369 ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+.|..++|.+..++|+.+|+.||..++..+|+|||.-|||.||||..|+|+|++|..|||+.+.||.+|++|+||+|+|+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1449 VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
||+|+. .++||++|.. ++..|++++.-|+..
T Consensus 851 IhR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 851 IHRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTG 881 (901)
T ss_pred EEEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccC
Confidence 999975 4899999987 899999999999974
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=495.82 Aligned_cols=482 Identities=32% Similarity=0.470 Sum_probs=364.4
Q ss_pred CCCcHHHHHHHHHHHHh-------hc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSL-------YN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL-------~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
..|+|||+-||+||... |+ .+.|||||+.||||||+|+|+++--++. .-..+.+|+|||-.++.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHh
Confidence 37999999999998742 22 5789999999999999999999988775 45667899999999999999999
Q ss_pred HHHCCC-----------CeEEEEecc---hhhHhHHHHHHHhhccccEEEEeHHHHHhh---------------------
Q 000169 1070 HKWLPS-----------VSCIYYVGA---KDQRSRLFSQEVAALKFNVLVTTYEFIMYD--------------------- 1114 (1953)
Q Consensus 1070 ~KwaPs-----------lkVvvy~Gs---~deRk~l~~qei~~~~fdVVITTYEsL~kd--------------------- 1114 (1953)
..|.|. +.|.+.... -+.|.+++.++ ...-.|+++-|++++-.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~W--v~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQW--VQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHH--hccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 999874 344444332 23444444332 34557999999987532
Q ss_pred -----------------hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcc
Q 000169 1115 -----------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1115 -----------------~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
...|.+-..|+||+||+|+|||....++.+|+.+++++|+.|||-|+||+|-|+|++++|+.|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 112333357999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHH
Q 000169 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS 1257 (1953)
Q Consensus 1178 ~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr 1257 (1953)
..+++..+|...|.+|+.++...+..-++... ..+-.+.||.+|..|+-||.-.-+..-||.+.|++|.+.||..|+
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvkl---mryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVKL---MRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHHH---HHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 99999999999999999998776665544322 233467899999999999999988889999999999999999999
Q ss_pred HHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc---------------------
Q 000169 1258 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS--------------------- 1316 (1953)
Q Consensus 1258 ~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~--------------------- 1316 (1953)
.+|+.+..... +....+... .+.-| ..+.-..||+|||.+.|..+.
T Consensus 567 ~LY~~Fm~d~~---------r~~~~~~~~---~~NPL-kAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 567 QLYRNFMLDAK---------REIAANNDA---VFNPL-KAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred HHHHHHHHHHH---------Hhhcccccc---ccChH-HHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99987642111 101000000 00001 112234556677754221100
Q ss_pred -----------------------------------------ccch-----------------hhhhhcccHHHHHHHHHH
Q 000169 1317 -----------------------------------------DLSK-----------------DFLVKSCGKLWILDRILI 1338 (1953)
Q Consensus 1317 -----------------------------------------dls~-----------------d~Li~~SGKLelLdrIL~ 1338 (1953)
+... .-+...+.|+.++.+++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 0000 001222344444445555
Q ss_pred HHHhcCCeeEEeechhHHHHHHHHHHHHc------------------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1339 kLkatGhKVLIFSQft~~LDILed~L~~r------------------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
+-..-|.++|||++....+|.|+++|..+ ...|+++||.++..+|+++|++||++-+-...|
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 55566899999999999999999999865 346899999999999999999999855444689
Q ss_pred EEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhh
Q 000169 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl 1480 (1953)
||||++|..||||-.|+.||+||..|||..+.||++|++|+||+|+|.||+|+.
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm-------------------------- 847 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM-------------------------- 847 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh--------------------------
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred cccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhh
Q 000169 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536 (1953)
Q Consensus 1481 ~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee 1536 (1953)
-.++|..|+.| +-.|..|.+.|++.-.-+..-+.. .|+.|+...+
T Consensus 848 ------D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~s~K----e~enLl~~~e 892 (1387)
T KOG1016|consen 848 ------DNSLEKKIYDR-QISKQGMSDRVVDDANPDANISQK----ELENLLMYDE 892 (1387)
T ss_pred ------hhhhHHHHHHH-HHhhccchhhhhcccCccccccHH----HHHHHhhhhh
Confidence 14677777765 456777777777665444333333 4556665443
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=519.09 Aligned_cols=410 Identities=20% Similarity=0.237 Sum_probs=296.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|.|||+..+.++...+ ..+.||||||||||||++++++.+++. .+..+|+|||||.+|+.||..|+.+|+. +..
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998776543 456799999999999999999888774 6777899999999999999999988874 445
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCc---hhHHHHHhhhc--cc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L--~a 1150 (1953)
.+|.+........ ........++++|+||+++.++. ..+....|++|||||||+++|. .++.++.+..+ .+
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 5554432111000 00012235789999999998753 4466779999999999999953 46678888777 56
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHHH-----------
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLET----------- 1210 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k--Pf-------~k~g~~~~~e~d~l~e----------- 1210 (1953)
+++|+|||||++|+..|+|++|+||+|+.|++...|.+.... |+ .............+..
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 789999999999999999999999999999999999765432 11 0111000000000000
Q ss_pred -----------HHHHHHHHHHHHH--hhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH-HHHccCcccCchhH
Q 000169 1211 -----------EKKVIIIHRLHQI--LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLRVDPEDE 1276 (1953)
Q Consensus 1211 -----------Eek~liI~RLhkl--LrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~-I~~~~~l~ld~~~e 1276 (1953)
.....++..|... ...+|+|+++.+|. .+|.+..+.+.+++++.....+.. +..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~~----------- 453 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSLEA----------- 453 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhHHH-----------
Confidence 0011111111111 23678899999986 489999999999887654333321 000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHH
Q 000169 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL 1356 (1953)
Q Consensus 1277 k~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~ 1356 (1953)
.++. |.+|...+..+. ....-+..+.|++.|..+|..+ .+.||||||++..+
T Consensus 454 -----------------------~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t 505 (956)
T PRK04914 454 -----------------------RARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAAT 505 (956)
T ss_pred -----------------------HHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHH
Confidence 0000 011100000000 0000123467999999988764 37899999999999
Q ss_pred HHHHHHHH-HHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhh
Q 000169 1357 LDILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435 (1953)
Q Consensus 1357 LDILed~L-~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAi 1435 (1953)
++.|.+.| ...|+++..+||+++..+|.++++.|+.+++.+. |||||++||+||||+.|++||+||+||||..|+||+
T Consensus 506 ~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRI 584 (956)
T PRK04914 506 ALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRI 584 (956)
T ss_pred HHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHh
Confidence 99999999 4679999999999999999999999997554555 477889999999999999999999999999999999
Q ss_pred hcccccCCcceEEEEEEeh
Q 000169 1436 ARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1436 GRAhRIGQKKeV~VyrLvT 1454 (1953)
||+||+||++.|.||+++.
T Consensus 585 GR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 585 GRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred cccccCCCCceEEEEEccC
Confidence 9999999999999998754
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=465.33 Aligned_cols=419 Identities=27% Similarity=0.342 Sum_probs=318.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC- 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV- 1078 (1953)
.|.|||++||.+.+. .+.++|||||||||||+|+|++..|... .+|.|||||.++...|..++.+|+|....
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 699999999999885 4556799999999999999998877653 46999999999999999999999998655
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc--ccceeEEe
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLL 1156 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--~a~~RLLL 1156 (1953)
.+..+..+.-. .......|.|.||+.+......|..-+|.+||+||+|++|+..+++++++.-+ .+.+.|||
T Consensus 271 ~vv~~~~D~~~------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLP------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCcc------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 23333333210 11223468999999999999999998999999999999999999999988866 67899999
Q ss_pred cccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHHHHhh
Q 000169 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVED 1235 (1953)
Q Consensus 1157 TGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRRlKkD 1235 (1953)
||||.-..+.|||.++..+++.+|.+..+|-..|..--...-..+. .+.....+|+-+|.. .|+||+|.+
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dy---------kg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDY---------KGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeec---------CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887766432111000000 001123457777754 599999999
Q ss_pred hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 000169 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (1953)
Q Consensus 1236 VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l 1315 (1953)
|+++||+|...++.+ ....+-+..+.+.......... ..|+-.+.|.- ++|
T Consensus 416 vL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~~-----------------------~~~e~~~~~l~--l~y--- 466 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTKV-----------------------NSMERKHESLL--LFY--- 466 (689)
T ss_pred HHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcchh-----------------------hhhhhhhHHHH--HHH---
Confidence 999999996655543 2333333333332211100000 00000000000 000
Q ss_pred cccchhhhhhcccHHHHHHHHHHH----HHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~k----LkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
-...-.|+..+.+.|.. ..+.+.|+||||....++|-|+.++..+++.++||||+|+..+|..+++.|+
T Consensus 467 -------~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 467 -------SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred -------HHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 00111233333333333 3467889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccC
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1471 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~ 1471 (1953)
. +.++.|-+||..|+|.||+|++|+.|+|..++|||...+||.||+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6789999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHH
Q 000169 1472 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510 (1953)
Q Consensus 1472 gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVI 1510 (1953)
++++++.++..+ ..|+++...+-
T Consensus 602 ---------------KgT~Ddy~Wp~l-~~KL~vl~s~g 624 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPML-QQKLDVLGSVG 624 (689)
T ss_pred ---------------cCchHHHHHHHH-HHHHHHHhhcc
Confidence 589999999976 55777665543
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-51 Score=505.25 Aligned_cols=388 Identities=40% Similarity=0.617 Sum_probs=344.5
Q ss_pred ccCCcccC--CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 990 ~eqPs~L~--ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||+++|.++..++......+|+||++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46777665 5899999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH-------------------HhhccccEEEEeHHHHHhhhhcccccCccEEEc
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE-------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1128 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qe-------------------i~~~~fdVVITTYEsL~kd~s~L~kikWd~VII 1128 (1953)
|+..|+|.+.++.|.|+.+.|.-+.... .....|+|.+++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 9999999999999999988765442111 124578999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++|+||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999998888876421
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000169 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~a 1288 (1953)
.....+..||.++.|+++||++.||.+.+|.|.+.++.+.|+..|+.+|+.+.......+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 12235788999999999999999999999999999999999999999999987654222111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHH
Q 000169 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363 (1953)
Q Consensus 1289 k~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~ 1363 (1953)
...-.++|++|+|||+|||||++...... .....++..++|+.+|..++++++..|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 12356789999999999999998762211 1234578999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccc
Q 000169 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (1953)
Q Consensus 1364 L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeG 1410 (1953)
|...+ .|.|+||.....+|+.+|++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=506.47 Aligned_cols=918 Identities=27% Similarity=0.223 Sum_probs=685.1
Q ss_pred CCCCccccccCCCCCCCccccccCccccchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000169 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (1953)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (1953)
..+++.|+++|+++.+.++..+.++- +..|+++. +++.-..-|++.++..++| +...+|++|++++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 44777788888887666655443210 11111110 1111123366778888898 8999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhHhHhHHhhhh--hcCCC
Q 000169 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (1953)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (1953)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..+++|++|++++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988766544444333333 4578999999999999999999987 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhcchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000169 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (1953)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (1953)
..+ ++|++.||+++.||.. ....++-.+.++++.+-. .|.|++.|.++.--. --.||.|.+.- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 444445567788877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHHhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHhhhcccccCCCCCC
Q 000169 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (1953)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1953)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.+++++++.|++ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 7899999999999999887776 46779999999999999999
Q ss_pred CCCcccCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCCcccccccccccccccccccCcCC
Q 000169 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (1953)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1953)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++++|++ .......+-++..+-..+ ..+|.++++|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999998888877888878888 9999999999999999999 666666676776666555 3489999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000169 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLP-V-KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (1953)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1953)
..-....+---+||+.-|+.+-.+.-+. +....- . .-.---|..+|+-.++++-+.+....+++++.--+- |...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEMG-LGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEMG-LGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhcc-cchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 6555555555566666677766654423 221111 1 111345677777778888888877777777655441 01111
Q ss_pred CCCCCCccccCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000169 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (1953)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1953)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.+||..|.+|+...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222788999999999999 999999999999988 9999999999999998 788888888877776665 45667
Q ss_pred hcccccCccccccccccCCCCCcccccccCCCCcccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccCchhhhh
Q 000169 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (1953)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (1953)
.|-+..++ .+|.--.-++..+...+....+.-.+-.. ..+.+.+.. .+-......-..++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 78888877 66666656666666666555554443322 122222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCcccCCCCCccccccccCCCCCCCCCCCCccccccccCCCCCCCCccccccCCCCccccccCCCC
Q 000169 619 GLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNN 698 (1953)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1953)
.-+..| |-..+.+|.++. +--|+.=+.....+..+.|.+..+.|.++|++++.+.||...-+.. ..|-+.+
T Consensus 625 VE~~LP---dKve~viKC~mS-----alQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve~~ 695 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMS-----ALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVENS 695 (1157)
T ss_pred HhhhCc---hhhhHhhheehh-----hhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhccc
Confidence 888877 555666776653 2233444455556666778777899999999999999999988444 2145677
Q ss_pred cccccchHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 000169 699 LTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMA 778 (1953)
Q Consensus 699 ~~~~~d~~~l~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~Q~~lr~~~~~~~~~~~~ 778 (1953)
...-+|+.+|+...++.-+-.+++--|+.....+.-....+++.+.+...+.++-+++..|+-|-+.+.... +.+.+.
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~FN 773 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEIFN 773 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHHhc
Confidence 778888899999999987777788888888887776667778889999999999999999999999999887 667888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhhhh
Q 000169 779 MPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSKRK 857 (1953)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e-~~kr~ 857 (1953)
+|+++|..|...+.+.++.+-.|+.......+.+....+..|+++..|.+|..++.+..|..+|.++|++++++ +.|+.
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~ 853 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLD 853 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcC
Confidence 99999999999998888887777654444455556667888999999999999999999999999999999988 77888
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH-----H
Q 000169 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE-----V 925 (1953)
Q Consensus 858 ~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~LL~qte~---~l~~l~~~v~~~k~~q~-----~ 925 (1953)
.+.+-.++.++..++.+.|++++.++....+++ ...+++.|..+|.++|+ |+++|+......++.+. .
T Consensus 854 ~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ 933 (1157)
T KOG0386|consen 854 VDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLV 933 (1157)
T ss_pred chHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhh
Confidence 888888999999999999999987765555554 55677789999999999 99999988776555554 4
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHhhhhhcc
Q 000169 926 EEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLE 965 (1953)
Q Consensus 926 e~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e 965 (1953)
++....+....+..+ +++++.. ....+...++.+.+.+.+
T Consensus 934 ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te 980 (1157)
T KOG0386|consen 934 EEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTE 980 (1157)
T ss_pred hhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccch
Confidence 444444444444444 3433333 122333445555444444
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=462.39 Aligned_cols=443 Identities=30% Similarity=0.433 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000169 1003 DYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~KwaP- 1074 (1953)
.+|..+..|+..... .-.|||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444433322 3457899999999999999999876543222 45678999999999999999966653
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccccee
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~R 1153 (1953)
.+.+++|+| |.+. ......++||||||..+.. ..+..+.|-.||+||||.++|..+..++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r~kd---~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKD---KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----cccc---cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 477888888 1111 1234678899999999875 56777999999999999999999999999999999999
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
|.|||||+||++.|||+++.|+.-..|.....|...+..|+..... .....++..+|.++++||+|
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK 351 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTK 351 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999988888755411 22466788999999999988
Q ss_pred hhh-----hcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1234 EDV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1234 kDV-----ekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
..- .-.||++...++.|.++..++.+|+.+.............. ......|..+.-.+.+||++|+||
T Consensus 352 ~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~-------~~~~~~Y~~~l~~lLrlrq~c~h~ 424 (674)
T KOG1001|consen 352 EMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANE-------GTVSSTYAFFLKNLLRLRQACDHS 424 (674)
T ss_pred cccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhh-------chhhhhHHHHHHHHHHHHHHccch
Confidence 632 23699999999999999999999998876543322211111 111234666777788999999999
Q ss_pred CCCCCCccc-----------------c-----------ch-------------------------------------hhh
Q 000169 1309 LLNYPYFSD-----------------L-----------SK-------------------------------------DFL 1323 (1953)
Q Consensus 1309 ~L~~p~l~d-----------------l-----------s~-------------------------------------d~L 1323 (1953)
.++...... + .. ..+
T Consensus 425 ~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 425 LLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred HhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 874311000 0 00 000
Q ss_pred hh-------------cccHHHHHHHHHHHHHhcCC-eeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1324 VK-------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1324 i~-------------~SGKLelLdrIL~kLkatGh-KVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
+. .+.|+..+..+|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..
T Consensus 505 ~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~ 584 (674)
T KOG1001|consen 505 LSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTD 584 (674)
T ss_pred hhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcc
Confidence 00 13455555555554433333 99999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~L 1469 (1953)
|. .+..+.|+|+|.+|||.||||+.|++||++||+|||..+.||++|+|||||+++|.|++|+.
T Consensus 585 ~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i--------------- 648 (674)
T KOG1001|consen 585 FP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII--------------- 648 (674)
T ss_pred cc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh---------------
Confidence 99 58889999999999999999999999999999999999999999999999999999999954
Q ss_pred cCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHH
Q 000169 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (1953)
Q Consensus 1470 s~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkV 1509 (1953)
+++||++|++ |++.|..+.+..
T Consensus 649 -----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 -----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred -----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 4799999998 788888876644
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=382.53 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000169 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1004 YQleGL~WLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
||+.||.||+..+ ....|||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788999999999999999999999887643333 3699999999999999999999
Q ss_pred C-C-CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH-----hhhhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1073 L-P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1073 a-P-slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~-----kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
+ | .+++++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+..+.++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68888888876222111 223567899999999999 667778888999999999999999999999999
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.+.++|+|||||+.|++.|||++++||.|..+.+...|.++|..+ ..........+|..++.
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~ 222 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLS 222 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccc
Confidence 999999999999999999999999999999999999999999988544 12233445778999999
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
+|++||.++++...||+..+.++.|+|++.|+.+|+.+............ .........+...+++||++|
T Consensus 223 ~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c 293 (299)
T PF00176_consen 223 EFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVC 293 (299)
T ss_dssp CCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHh
Confidence 99999999999889999999999999999999999987665433322211 112245678889999999999
Q ss_pred CCCCC
Q 000169 1306 NHPLL 1310 (1953)
Q Consensus 1306 NHP~L 1310 (1953)
+||+|
T Consensus 294 ~hp~l 298 (299)
T PF00176_consen 294 NHPYL 298 (299)
T ss_dssp H-THH
T ss_pred CCccc
Confidence 99976
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=378.66 Aligned_cols=332 Identities=18% Similarity=0.278 Sum_probs=243.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Ps 1075 (1953)
..|||||.++|.|+.. .....+|||+++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+ +.
T Consensus 254 ~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 5899999999998863 1112579999999999999999888654 25899999987 5899999999997 34
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------hhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
..+..|.|..... ......|+||||+++... ...|....|++||+||||++.+ ....+.+
T Consensus 327 ~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il 396 (732)
T TIGR00603 327 SQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVL 396 (732)
T ss_pred ceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHH
Confidence 5666777753221 123468999999998643 2345556899999999999954 4455567
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
..+.+.+||+|||||++++ +.+..++++ .|.+|.- .|.+ ++
T Consensus 397 ~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~e----------------------------------Li 438 (732)
T TIGR00603 397 TIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWME----------------------------------LQ 438 (732)
T ss_pred HhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHH----------------------------------HH
Confidence 7788999999999999887 334444443 3433320 0000 00
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
. ...|.+.....++|+|++.....|-.. .. .. .. .| +
T Consensus 439 ---------~--~G~LA~~~~~ev~v~~t~~~~~~yl~~--~~--------~~--------------k~------~l--~ 475 (732)
T TIGR00603 439 ---------K--KGFIANVQCAEVWCPMTPEFYREYLRE--NS--------RK--------------RM------LL--Y 475 (732)
T ss_pred ---------h--CCccccceEEEEEecCCHHHHHHHHHh--cc--------hh--------------hh------HH--h
Confidence 0 134566667789999998754444211 00 00 00 00 0
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
+ ....|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.
T Consensus 476 ~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 476 V-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred h-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0 1235888888888876668999999999999888887777 33 4589999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcce-----EEEEEEeh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKe-----V~VyrLvT 1454 (1953)
+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..++||+||+.|.+..+. +.+|.|++
T Consensus 532 ~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 532 QILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 999999852 2334 466669999999999999999999986 99999999999999997764 67788876
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=359.92 Aligned_cols=427 Identities=19% Similarity=0.168 Sum_probs=266.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs-- 1075 (1953)
.++|+||.+.+..++. .|+|++++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3789999999887764 28999999999999999988887763 345799999998 5889999999988743
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhh---hccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLD---RYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk---~L~a 1150 (1953)
..++.+.|......+ .......+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+-. ....
T Consensus 87 ~~v~~~~g~~~~~~r----~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKR----AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHH----HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 477778775433221 112345799999999998763 3344557999999999999865443322211 2234
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.++++|||||..+ ...+..+++.|....+..+..|...+...+....... ....+. .....++.+|..++.+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~--~~v~l~-----~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEW--VRVELP-----EELKEIRDLLNEALKD 234 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEE--EEeCCc-----HHHHHHHHHHHHHHHH
Confidence 5699999999876 5666666666644333222222221111111000000 000011 1234577778888877
Q ss_pred HHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhh------hcC-hhhHHHHHHHHHHHHHHHH
Q 000169 1231 RRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV------QKN-PIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1231 RlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l------~kn-~~~~ak~~~sL~nilmqLR 1302 (1953)
+++..... .++.....+....+...+..++..+..... ......... ... ..........+...+..++
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS---EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 76654322 122222222233334444444444322110 000000000 000 0000000112222222232
Q ss_pred HhcCCCCCCCC---Ccccc-------chhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCe
Q 000169 1303 KTCNHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370 (1953)
Q Consensus 1303 KiCNHP~L~~p---~l~dl-------s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGik 1370 (1953)
..+.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 22211100000 00000 00111234689999999998876 57899999999999999999999999999
Q ss_pred EEeecCC--------CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1371 YRRIDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1371 ylRLDGs--------Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
+..++|. ++..+|..++++|+.+... +|++|+++++|+|++.|++||+||++||+..++|+.||++|.|
T Consensus 392 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~ 468 (773)
T PRK13766 392 AVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE 468 (773)
T ss_pred eEEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC
Confidence 9999987 8889999999999976544 6889999999999999999999999999999999999999987
Q ss_pred CcceEEEEEEe
Q 000169 1443 QKREVKVIYME 1453 (1953)
Q Consensus 1443 QKKeV~VyrLv 1453 (1953)
+ ++||.|+
T Consensus 469 ~---~~v~~l~ 476 (773)
T PRK13766 469 E---GRVVVLI 476 (773)
T ss_pred C---CEEEEEE
Confidence 6 4455554
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=305.17 Aligned_cols=336 Identities=16% Similarity=0.202 Sum_probs=229.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--P 1074 (1953)
.++|||||.+++..++. +.+|||..+||+|||++++.++.+++. ...+++|||||+. |+.||.++|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999977665 567899999999999988776665554 2334899999975 8999999999986 3
Q ss_pred CCeE-EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccce
Q 000169 1075 SVSC-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQR 1152 (1953)
Q Consensus 1075 slkV-vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~ 1152 (1953)
...+ .++.|.... ...+|+|+|++++.+....+ -.+|++|||||||++... .+...+..+ ++.+
T Consensus 186 ~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~ 251 (501)
T PHA02558 186 REAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKF 251 (501)
T ss_pred ccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccce
Confidence 3333 344443211 34689999999998654322 137899999999999753 344555666 5778
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+++|||||...... .+.+..++.|-. ... . .. .+
T Consensus 252 ~lGLTATp~~~~~~-~~~~~~~fG~i~---------------~~v------~---------------~~---------~l 285 (501)
T PHA02558 252 KFGLTGSLRDGKAN-ILQYVGLFGDIF---------------KPV------T---------------TS---------QL 285 (501)
T ss_pred EEEEeccCCCcccc-HHHHHHhhCCce---------------EEe------c---------------HH---------HH
Confidence 99999999543321 111222111100 000 0 00 00
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
.++ ..+.+.....+.+..+......+ .... +.. .+.
T Consensus 286 i~~--g~l~~~~~~~v~~~~~~~~~~~~---------------------~~~~-----~~~------~~~---------- 321 (501)
T PHA02558 286 MEE--GQVTDLKINSIFLRYPDEDRVKL---------------------KGED-----YQE------EIK---------- 321 (501)
T ss_pred HhC--CCcCCceEEEEeccCCHHHhhhh---------------------cccc-----hHH------HHH----------
Confidence 000 11222223333443332111000 0000 000 001
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+++..++|+++.++|..+++.|+.
T Consensus 322 ---------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~ 392 (501)
T PHA02558 322 ---------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG 392 (501)
T ss_pred ---------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC
Confidence 11122345566666777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc-eEEEEEEeh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (1953)
+...|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 --~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 --GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred --CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344566666699999999999999999999999999999999999998776 588998854
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=300.82 Aligned_cols=349 Identities=22% Similarity=0.285 Sum_probs=255.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
..+||+||.+++.-++..+.....||+..+||.|||+.++.++..+.. ++|||||.. |+.||.+.+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888876665788999999999999999999877643 499999976 8999998888887654
Q ss_pred -eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhhhcccce-
Q 000169 1077 -SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR- 1152 (1953)
Q Consensus 1077 -kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~- 1152 (1953)
.+-.+.|..... ....|+|+||+++.+.. ..+...+|++||+|||||+.+...+ ..+..+...+
T Consensus 108 ~~~g~~~~~~~~~----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKEL----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYP 175 (442)
T ss_pred cccceecCceecc----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccc
Confidence 445555543221 01579999999998863 4444558999999999999654443 2344555555
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+|+|||||...+...+..++.++.|-++.- ..
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g~~vy~~------------------------------------------------~~ 207 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIGPIVYEV------------------------------------------------SL 207 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcCCeEeec------------------------------------------------CH
Confidence 999999997665444444444443322210 00
Q ss_pred Hhhhh-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1233 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1233 KkDVe-kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
+..+. +.|.+.....+++.++......|..........+.. . ...-....
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~----------- 258 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA---------R---------GTLRAENE----------- 258 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh---------h---------hhhhHHHH-----------
Confidence 11111 457788889999999988888886443221100000 0 00000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
..........|+..+..++.... .+.+++|||..+...+.|...|...|+ +..++|.++..+|..+++.|+
T Consensus 259 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 259 -------ARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred -------HHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 11122334567788888888766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccc-cCCcceEEEEEEe
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYME 1453 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhR-IGQKKeV~VyrLv 1453 (1953)
.++ ..+|++++++.+|+|++.|+++|+..+.-++..++|++||+.| ...++.+.++.+.
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 865 3479999999999999999999999999999999999999999 5556666665553
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=283.01 Aligned_cols=417 Identities=21% Similarity=0.229 Sum_probs=253.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
+-|.||...+...+. .|.+++.+||||||++|+.++++.+...+ |.+|+++|+. |+.|...-|.+.+ |..
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 679999998887774 48999999999999999999987665333 4899999976 8999999999887 568
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhH--HHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SK--lsraLk~L~a-~ 1151 (1953)
.++.+.|......+ ...+.+-+|+|.|++.+.+|. ..+...++.+||+|||||.-...+- ..+....+.+ .
T Consensus 88 ~i~~ltGev~p~~R----~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 88 EIAALTGEVRPEER----EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred heeeecCCCChHHH----HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 88888886433211 233556799999999999884 4566678999999999998653332 2232333333 4
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~----S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.|+||||| -++...+...++-|..+-.- ...+...+... ... ... ...+ -++-..+...|..+++|.
T Consensus 164 ~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-~kv----e~i-kV~l-p~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 164 LILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-IKV----EWI-KVDL-PEEIKEIRDLLRDALKPR 235 (542)
T ss_pred eEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-cee----EEE-eccC-cHHHHHHHHHHHHHHHHH
Confidence 689999999 56667777777666443211 00111111100 000 000 0000 111222344555555554
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc-----------ChhhHHHHHHHHHH
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK-----------NPIYQAKVYKTLNN 1296 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~k-----------n~~~~ak~~~sL~n 1296 (1953)
+- .+++- -.....++. .++.+..................-.+.. ......-+...+.+
T Consensus 236 Lk-~L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~ 304 (542)
T COG1111 236 LK-PLKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQ 304 (542)
T ss_pred HH-HHHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 32 11111 011111111 1222222110000000000000000000 00000001122222
Q ss_pred HHHHHHHhcCCCC-------CCCCCccccc-----hhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHH
Q 000169 1297 RCMELRKTCNHPL-------LNYPYFSDLS-----KDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEE 1362 (1953)
Q Consensus 1297 ilmqLRKiCNHP~-------L~~p~l~dls-----~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed 1362 (1953)
-+.+|..-|..-. +..+++.... ....--.-+|++.|.+||.+.. ..+.|||||++|+++++.|.+
T Consensus 305 Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 305 YLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred HHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHH
Confidence 2223332222200 0000000000 0001113479999999999886 566899999999999999999
Q ss_pred HHHHcCCeEE-eecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHh
Q 000169 1363 YLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433 (1953)
Q Consensus 1363 ~L~~rGikyl-RLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~Q 1433 (1953)
+|...|+... ++-| +|++++..++|+.|+.+..+ +|++|.+|.+|||++.+|.||||||.-++-..+|
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQ 461 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQ 461 (542)
T ss_pred HHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHH
Confidence 9999998875 5555 69999999999999986655 7999999999999999999999999999999999
Q ss_pred hhhcccccCCcceEEEE
Q 000169 1434 AVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1434 AiGRAhRIGQKKeV~Vy 1450 (1953)
|+||++|- .+..|.|+
T Consensus 462 R~GRTGR~-r~Grv~vL 477 (542)
T COG1111 462 RKGRTGRK-RKGRVVVL 477 (542)
T ss_pred hhCccccC-CCCeEEEE
Confidence 99999996 34444443
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-29 Score=316.18 Aligned_cols=274 Identities=27% Similarity=0.420 Sum_probs=201.8
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHH-----------H----HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-eEE
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLM-----------E----FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SCI 1079 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Ll-----------e----~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl-kVv 1079 (1953)
+..+..+++|||||+|||+..+++...-. . .....|.+|||||.+++.||..||.+++++. +|+
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 34455679999999999999887764321 0 0113478999999999999999999999876 999
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------------------hhcccccCccEEEcccccccCCc
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------------------RSKLSKVDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------------------~s~L~kikWd~VIIDEAHrLKN~ 1137 (1953)
.|.|-...- .........+|||||||+.++.+ .+.|..+.|..||||||+-+...
T Consensus 451 ~Y~Girk~~---~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 451 LYFGIRKTF---WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EEechhhhc---ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 999965432 11224467899999999999765 23356678999999999999999
Q ss_pred hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000169 1138 ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1217 (1953)
Q Consensus 1138 ~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI 1217 (1953)
.|..++++..+++.++|..||||+++ +.+|+.||+||.-..|+....|.+.+..++... ..-
T Consensus 528 sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~~ 589 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AKC 589 (1394)
T ss_pred HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hhh
Confidence 99999999999999999999999999 999999999999999999999988776554332 122
Q ss_pred HHHHHHhhHHHHHHHHhhhhc--CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhh------hhcChhhHHH
Q 000169 1218 HRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR------VQKNPIYQAK 1289 (1953)
Q Consensus 1218 ~RLhklLrPFmLRRlKkDVek--dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~------l~kn~~~~ak 1289 (1953)
..+++++...+.|+.+.+|+. .+|+..+.+.+..+++.+..+|+..--.-........+... .........-
T Consensus 590 ~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~ 669 (1394)
T KOG0298|consen 590 EPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQ 669 (1394)
T ss_pred hhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChh
Confidence 357788888899999988876 47888888888888888877775331100000000000000 0011112223
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 000169 1290 VYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L 1310 (1953)
....+.+.+.+||++|+||.+
T Consensus 670 ~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 670 LLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred hHHHHHHHHHHHHHhhccccc
Confidence 356778888999999999965
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=286.08 Aligned_cols=317 Identities=20% Similarity=0.246 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
++.|+|..++..++. +.+.|++.+||+|||++++..+. .+.... +....+|||||+. |+.||..++.++.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988775 78899999999999998865443 333211 1122479999987 7788999999987
Q ss_pred CC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhhh
Q 000169 1074 PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDR 1147 (1953)
Q Consensus 1074 Ps--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~ 1147 (1953)
.. +++.+..|......... ......+|+|+|++.|..... .+.-.++++|||||||++..... .+.+.+..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred cccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 53 55555555544332221 223467999999998875432 22234678999999999976432 33444455
Q ss_pred ccc-ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
+.. ...+++|||.- .++-.+.. +|.
T Consensus 305 ~~~~~q~l~~SAT~p----~~v~~l~~---------------~l~----------------------------------- 330 (545)
T PTZ00110 305 IRPDRQTLMWSATWP----KEVQSLAR---------------DLC----------------------------------- 330 (545)
T ss_pred CCCCCeEEEEEeCCC----HHHHHHHH---------------HHh-----------------------------------
Confidence 543 35788999941 11111111 000
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
...| ..+.+.... ...+..+ ++
T Consensus 331 -----------~~~~----v~i~vg~~~--l~~~~~i--------------------------------------~q--- 352 (545)
T PTZ00110 331 -----------KEEP----VHVNVGSLD--LTACHNI--------------------------------------KQ--- 352 (545)
T ss_pred -----------ccCC----EEEEECCCc--cccCCCe--------------------------------------eE---
Confidence 0000 000000000 0000000 00
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
.-..+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..+
T Consensus 353 -------------~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 353 -------------EVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred -------------EEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 0000111235556666777665578899999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.|+++... +|++|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|.
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999976555 7999999999999999999999999999999999999999999887765543
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=277.41 Aligned_cols=312 Identities=18% Similarity=0.255 Sum_probs=220.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
++.|+|.+++..++. +.+.|++.+||+|||..++..+...+........+|||||+. |+.||..++.+++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999887776666554333334689999976 7788999888764 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a- 1150 (1953)
+++..+.|+....... .......+|+|+|++.+.... ..+.-.++++|||||||++.+.. ..+...+..+..
T Consensus 102 ~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 102 IKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred cEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 8888888776544332 122367899999999997653 22333468999999999986543 234444445543
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...+++|||+-. ++-.+...+ +..|.....
T Consensus 179 ~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~~-------------------------------- 208 (460)
T PRK11776 179 RQTLLFSATYPE----GIAAISQRF--------------QRDPVEVKV-------------------------------- 208 (460)
T ss_pred cEEEEEEecCcH----HHHHHHHHh--------------cCCCEEEEE--------------------------------
Confidence 357899999721 111111100 000000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
......+......+.+
T Consensus 209 ----~~~~~~~~i~~~~~~~------------------------------------------------------------ 224 (460)
T PRK11776 209 ----ESTHDLPAIEQRFYEV------------------------------------------------------------ 224 (460)
T ss_pred ----CcCCCCCCeeEEEEEe------------------------------------------------------------
Confidence 0000000000111100
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
....|+..|..+|.. ..+.++||||+....++.+.+.|...|+.+..+||+++..+|..+++.|
T Consensus 225 --------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 225 --------------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred --------------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 011245555555543 2456899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++... +|++|+++++|||++++++||+||.|.++..|+||+||++|.|....+.++.
T Consensus 289 ~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~ 346 (460)
T PRK11776 289 ANRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLV 346 (460)
T ss_pred HcCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEE
Confidence 976555 7899999999999999999999999999999999999999999887665543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=274.50 Aligned_cols=307 Identities=19% Similarity=0.200 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.+||+|.+++.-++. +.+.|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+..+ ++.+
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998876 678999999999999877554432 245789999976 778888888765 4555
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhhh---hcc-cccCccEEEcccccccCCchh-------HHHHHh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARDL 1145 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd~---s~L-~kikWd~VIIDEAHrLKN~~S-------KlsraL 1145 (1953)
..+.+..... ..++ .....+.++|+++|++.+.... ..+ ...++.+|||||||.+..... .+....
T Consensus 79 ~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 5555543322 2222 2345667899999999986532 223 445789999999999864322 122222
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.....++|||||......++...+++-.|.++.. .|.
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~---------------------------------- 197 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD---------------------------------- 197 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC----------------------------------
Confidence 3445567899999996655555555444333322110 000
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
-|.....+.. ..
T Consensus 198 --------------r~nl~~~v~~-~~----------------------------------------------------- 209 (470)
T TIGR00614 198 --------------RPNLYYEVRR-KT----------------------------------------------------- 209 (470)
T ss_pred --------------CCCcEEEEEe-CC-----------------------------------------------------
Confidence 0000000000 00
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
...+..|..++.+ ...+.++||||.....++.|...|...|+.+..+||+++.++|..
T Consensus 210 ---------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~ 267 (470)
T TIGR00614 210 ---------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDD 267 (470)
T ss_pred ---------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHH
Confidence 0011111112211 134667899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 268 i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 268 VHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 99999976555 78999999999999999999999999999999999999999999988877654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=267.03 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH----hCCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF----KGNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~----kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
+++++|.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 6789999999999999987665544321 12234689999977 77888888877754
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhc
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L 1148 (1953)
++.+..+.|+....... ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA---EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred cCCcEEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 46777777765443221 233457899999999887542 23334567899999999986533 2222222233
Q ss_pred c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~-kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
. ....+++|||+-...+.+ |..++. .|.......
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~~-------------------------- 211 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAEP-------------------------- 211 (434)
T ss_pred ccccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEecC--------------------------
Confidence 2 245689999973221111 111110 000000000
Q ss_pred HHHHHHHhhhhcCCCCceEEE-EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~v-V~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
........... +.+.
T Consensus 212 ----------~~~~~~~i~~~~~~~~------------------------------------------------------ 227 (434)
T PRK11192 212 ----------SRRERKKIHQWYYRAD------------------------------------------------------ 227 (434)
T ss_pred ----------CcccccCceEEEEEeC------------------------------------------------------
Confidence 00000000000 0000
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
....|+.+|..++.. ....++||||.....++.|...|...|+.+..++|+++..+|..
T Consensus 228 -------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 228 -------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred -------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHH
Confidence 001244555555542 24578999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++.|+.+... +|++|+++++|||++.+++||+||+|+++..|+||+||++|.|.+..+.++.
T Consensus 287 ~l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 287 AIKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred HHHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEe
Confidence 99999976555 7999999999999999999999999999999999999999999887766553
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=270.86 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.+.|.|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.||.+++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999987775 788999999999999998766554332111 124589999987 77889888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHh
Q 000169 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (1953)
Q Consensus 1072 waP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraL 1145 (1953)
+.. ++.+.++.|+....... ......++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 763 46777777765433221 122356899999999987543 23444578999999999986533 2222333
Q ss_pred hhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1146 k~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
..+. ....+++|||.-. .+.++. ..++..|....-
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~v------------------------ 220 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVEV------------------------ 220 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEEE------------------------
Confidence 3333 2235788888521 111110 000000000000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
... ..........+.
T Consensus 221 ----------~~~--~~~~~~i~~~~~----------------------------------------------------- 235 (423)
T PRK04837 221 ----------EPE--QKTGHRIKEELF----------------------------------------------------- 235 (423)
T ss_pred ----------cCC--CcCCCceeEEEE-----------------------------------------------------
Confidence 000 000000000000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ee 1382 (1953)
+ .....|+.+|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 236 ---------~-----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 236 ---------Y-----------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ---------e-----------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0 0012244555555543 24678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|..+++.|+.++.. +|++|+++++|||++.+++||+||+|+++..|+|++||++|.|++..+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999986665 799999999999999999999999999999999999999999988766444
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=272.18 Aligned_cols=312 Identities=20% Similarity=0.238 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|+|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.||.+++..+
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998776665543221 112589999986 788899999988
Q ss_pred CC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhh
Q 000169 1073 LP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (1953)
Q Consensus 1073 aP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk 1146 (1953)
+. .+.++.+.|........ ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQM---MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred hccCCCEEEEEECCcCHHHHH---HHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 64 45666666655433322 122457899999999986542 22333468899999999986533 22334444
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+... ..+++|||+-. .+.++ ...+ +..|....-.
T Consensus 176 ~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~~~i~~~-------------------------- 211 (456)
T PRK10590 176 KLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNPLEIEVA-------------------------- 211 (456)
T ss_pred hCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCCeEEEEe--------------------------
Confidence 55433 47899999621 11111 1100 0011000000
Q ss_pred HHHHHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1226 PFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
.. ...++... .+..+.
T Consensus 212 -------~~---~~~~~~i~~~~~~~~----------------------------------------------------- 228 (456)
T PRK10590 212 -------RR---NTASEQVTQHVHFVD----------------------------------------------------- 228 (456)
T ss_pred -------cc---cccccceeEEEEEcC-----------------------------------------------------
Confidence 00 00000000 000000
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
...|..+|..++.. ....++||||.....++.|.+.|...++.+..+||.++.++|.
T Consensus 229 ---------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 229 ---------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred ---------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 00122233333322 2346899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.+++.|+++... +|++|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 286 ~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 286 RALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 999999976555 7899999999999999999999999999999999999999999887766554
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=270.06 Aligned_cols=317 Identities=22% Similarity=0.284 Sum_probs=228.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|.|..+...++. +..+|....||+|||+..+..+...+.. ++....+||++|+. |..|-..++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577888888777776 8889999999999999987755444432 22333489999998 667778888888
Q ss_pred CCCCe--EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC--chhHHHHHhh
Q 000169 1073 LPSVS--CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLD 1146 (1953)
Q Consensus 1073 aPslk--Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk 1146 (1953)
...+. +++++|+.....++ .......+|+|+|++.++... ..+.-.+..|+|+|||++|.. ....+.+.|.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~---~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQL---RDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHH---HHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 86543 55555554444333 223567899999999998763 345555789999999999965 4556777777
Q ss_pred hc-ccce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1147 RY-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1147 ~L-~a~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
.+ ++.+ .|+.|+|= ..+
T Consensus 266 ~i~~~~rQtlm~saTw-----------------------p~~-------------------------------------- 284 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATW-----------------------PKE-------------------------------------- 284 (519)
T ss_pred hcCCCcccEEEEeeec-----------------------cHH--------------------------------------
Confidence 77 4444 56667761 000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+|.+..++.. .|-.+. +... . ....+..+.++-..
T Consensus 285 ----v~~lA~~fl~-~~~~i~-ig~~------------------------~---------------~~~a~~~i~qive~ 319 (519)
T KOG0331|consen 285 ----VRQLAEDFLN-NPIQIN-VGNK------------------------K---------------ELKANHNIRQIVEV 319 (519)
T ss_pred ----HHHHHHHHhc-CceEEE-ecch------------------------h---------------hhhhhcchhhhhhh
Confidence 1111111111 111111 1000 0 00001122333333
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH-hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeR 1383 (1953)
|+ ...|...|..+|.+.. ..+.||||||.+...++.|+..|+..++++..|||..++.+|
T Consensus 320 ~~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 320 CD-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred cC-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 32 2467888888888876 455699999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1384 qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
..+|+.|++++.. +|++|+++++|||++++|+||+||+|-|...|+||+||++|.|++.....|.
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 9999999987776 8999999999999999999999999999999999999999999887765543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=275.65 Aligned_cols=312 Identities=18% Similarity=0.218 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998885 788999999999999998776655432211 134789999987 77889999998
Q ss_pred HCCC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCch--hHHHHH
Q 000169 1072 WLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARD 1144 (1953)
Q Consensus 1072 waPs--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~~--SKlsra 1144 (1953)
|... +++..++|........ ......++|||+|++.|..... .+....+++|||||||++.... ..+...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~---~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR---ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 8754 5676777765443221 2234568999999999876532 2333467899999999986432 222233
Q ss_pred hhhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1145 LDRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1145 Lk~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
+..+. ....+++|||.-. . +..+.. .++..|.....
T Consensus 184 l~~lp~~~~~q~ll~SATl~~-~---v~~l~~--------------~~l~~p~~i~v----------------------- 222 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSH-R---VLELAY--------------EHMNEPEKLVV----------------------- 222 (572)
T ss_pred HHhcccccCceEEEEeCCccH-H---HHHHHH--------------HHhcCCcEEEe-----------------------
Confidence 33343 3457889999521 1 111110 00110100000
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
+.....+......+.+
T Consensus 223 -------------~~~~~~~~~i~q~~~~--------------------------------------------------- 238 (572)
T PRK04537 223 -------------ETETITAARVRQRIYF--------------------------------------------------- 238 (572)
T ss_pred -------------ccccccccceeEEEEe---------------------------------------------------
Confidence 0000000000000000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~e 1381 (1953)
.....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..+||.++..
T Consensus 239 ----------------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~ 294 (572)
T PRK04537 239 ----------------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQK 294 (572)
T ss_pred ----------------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 0001233444444432 3567999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+|..+++.|+++... +||+|+++++|||++.+++||+||.||++..|+|++||++|.|.+..+.++
T Consensus 295 eR~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 295 KRESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 999999999976555 799999999999999999999999999999999999999999988776554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=274.47 Aligned_cols=314 Identities=15% Similarity=0.152 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
++.|+|.+++..++. +.+.|+...||+|||++++..+...+........+|||||+. |+.||..++.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 689999999988875 678899999999999998666555444333445689999986 7789988887764 67
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a- 1150 (1953)
+.++.++|.......+. ......+|||+|++.+.... ..+.-.++.+|||||||.|.+.. ..+...+..+..
T Consensus 104 i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 104 VNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred ceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 88887777654433221 22346899999999997653 22334467889999999986543 234445555543
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...+++|||.-. .+.++ .. .++..|....
T Consensus 181 ~q~llfSAT~p~-~i~~i---~~--------------~~l~~~~~i~--------------------------------- 209 (629)
T PRK11634 181 HQTALFSATMPE-AIRRI---TR--------------RFMKEPQEVR--------------------------------- 209 (629)
T ss_pred CeEEEEEccCCh-hHHHH---HH--------------HHcCCCeEEE---------------------------------
Confidence 346889999511 11110 00 0000000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+... ....|......+
T Consensus 210 -i~~~-~~~~~~i~q~~~-------------------------------------------------------------- 225 (629)
T PRK11634 210 -IQSS-VTTRPDISQSYW-------------------------------------------------------------- 225 (629)
T ss_pred -ccCc-cccCCceEEEEE--------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
.+...-|+..|.++|.. ....++||||.....++.|..+|...|+.+..+||.++..+|..++++|
T Consensus 226 ------------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 226 ------------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred ------------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 00111245555555543 2346899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+.+..+ +||+|+++++|||++.+++||+||+|.++..|+|++||++|.|.+..+.++..
T Consensus 292 r~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 292 KDGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred hCCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 986655 79999999999999999999999999999999999999999998776665543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=266.62 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.++++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....+|||+|+. |+.||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999987765 788999999999999988766554443221 134689999976 77888888888
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHh
Q 000169 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDL 1145 (1953)
Q Consensus 1072 waP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraL 1145 (1953)
+.. ++.+..+.|+.+..... .......++|+|+|++++..... .+.-.++++|||||+|++.+... .+.+.+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 764 46777777765433222 12334568999999999875422 22223678999999999975432 233344
Q ss_pred hhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1146 k~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
..+. ....+++|||... ++.++ .. .|...|....-.
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~-~~~~~---~~--------------~~~~~~~~v~~~----------------------- 301 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTD-DVMNL---AK--------------QWTTDPAIVEIE----------------------- 301 (475)
T ss_pred HhCCCCCCceEEEEEeecCH-HHHHH---HH--------------HhccCCEEEEec-----------------------
Confidence 4442 2458899999521 11111 11 011001000000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
...+ ..+.....++
T Consensus 302 ----------~~~~---~~~~~~~~~~----------------------------------------------------- 315 (475)
T PRK01297 302 ----------PENV---ASDTVEQHVY----------------------------------------------------- 315 (475)
T ss_pred ----------cCcC---CCCcccEEEE-----------------------------------------------------
Confidence 0000 0000000000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ee 1382 (1953)
.+....|..+|..++.. ....++||||+....++.|.++|...|+.+..++|.++.++
T Consensus 316 --------------------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 316 --------------------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHK 373 (475)
T ss_pred --------------------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 00112234444444432 23469999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|.++++.|++++.. +|++|+++++|||++++|+||+||+|++...|+|++||++|.|....+.+|
T Consensus 374 R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 374 RIKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 99999999976555 789999999999999999999999999999999999999999987765554
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=271.28 Aligned_cols=312 Identities=17% Similarity=0.197 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH------hCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF------KGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.++|+|..++..++. +.+.|++.+||+|||+.++..+.. ++.. ......+|||+|+. |+.|+..++..
T Consensus 143 ~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 799999999988875 788999999999999998776543 3221 11234689999987 77788888887
Q ss_pred HCCC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHh
Q 000169 1072 WLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (1953)
Q Consensus 1072 waPs--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraL 1145 (1953)
+... +++..+.|+........ .....++|+|+|++.+.... ..+...+..+|||||||+|.... ..+...+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~---~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~ 295 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLY---RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIF 295 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHH
Confidence 7644 44555555433322221 12346899999999886542 22333467899999999996533 3344455
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.....+++|||.-. . +-.+...+... +.... ..
T Consensus 296 ~~l~~~q~l~~SATl~~-~---v~~l~~~~~~~--------------~~~i~-~~------------------------- 331 (518)
T PLN00206 296 QALSQPQVLLFSATVSP-E---VEKFASSLAKD--------------IILIS-IG------------------------- 331 (518)
T ss_pred HhCCCCcEEEEEeeCCH-H---HHHHHHHhCCC--------------CEEEE-eC-------------------------
Confidence 55666778999999621 1 11111111000 00000 00
Q ss_pred HHHHHHHHhhhhcCCCCc--eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000169 1226 PFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpK--vE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK 1303 (1953)
. ...+.. ...+++|.
T Consensus 332 ---------~--~~~~~~~v~q~~~~~~---------------------------------------------------- 348 (518)
T PLN00206 332 ---------N--PNRPNKAVKQLAIWVE---------------------------------------------------- 348 (518)
T ss_pred ---------C--CCCCCcceeEEEEecc----------------------------------------------------
Confidence 0 000000 01111111
Q ss_pred hcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH-cCCeEEeecCCCCHHH
Q 000169 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1304 iCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~-rGikylRLDGsTs~ee 1382 (1953)
...|...|..+|........++||||.....++.|...|.. .|+.+..+||+++.++
T Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 349 ----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 01122233334443333346899999999999999999975 6999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|..+++.|+.+... +|++|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.+|
T Consensus 407 R~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 407 RREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 99999999986655 799999999999999999999999999999999999999999987666554
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=254.68 Aligned_cols=313 Identities=19% Similarity=0.240 Sum_probs=209.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.+.|+|..++..+.. +.+.|++.+||+|||+.++..+...+........+|||||.. |+.||...+..++. .+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988766666554333445799999976 66777777777654 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a-~ 1151 (1953)
.+....|....+... .......+|+|+|++.+.... ..+...++++|||||+|++.... ..+...+..+.. .
T Consensus 126 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 126 RCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred eEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 555555654433221 122345699999999876432 22334478999999999986432 344555555543 4
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++|||+-. ...++ .. .++..|......
T Consensus 203 ~~i~~SAT~~~-~~~~~---~~--------------~~~~~~~~~~~~-------------------------------- 232 (401)
T PTZ00424 203 QVALFSATMPN-EILEL---TT--------------KFMRDPKRILVK-------------------------------- 232 (401)
T ss_pred EEEEEEecCCH-HHHHH---HH--------------HHcCCCEEEEeC--------------------------------
Confidence 58999999622 11111 00 000000000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
...+ .+.......+.+. .
T Consensus 233 -~~~~--~~~~~~~~~~~~~--~--------------------------------------------------------- 250 (401)
T PTZ00424 233 -KDEL--TLEGIRQFYVAVE--K--------------------------------------------------------- 250 (401)
T ss_pred -CCCc--ccCCceEEEEecC--h---------------------------------------------------------
Confidence 0000 0000000011100 0
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
...++..+..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|+
T Consensus 251 --------------~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~ 314 (401)
T PTZ00424 251 --------------EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR 314 (401)
T ss_pred --------------HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 00011122222221 13468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++... +|++|+++++|||++.+++||+||++.++..|.|++||++|.|....|.++
T Consensus 315 ~g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 315 SGSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred cCCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 76655 789999999999999999999999999999999999999999976655443
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=257.53 Aligned_cols=419 Identities=20% Similarity=0.227 Sum_probs=250.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..||+||.+.+.-.+ +.|.|+|.+||+|||.+|+.++...++.... ++++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999998776 6789999999999999998888777765444 8999999987 78888888888774455
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccc---cCccEEEcccccccC-Cc-hhHHHHHhhhc--cc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMK-DR-ESVLARDLDRY--RC 1150 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~k---ikWd~VIIDEAHrLK-N~-~SKlsraLk~L--~a 1150 (1953)
+....|+...+... .......+|+|.|++.+.++...-.. -.|.+||||||||.. |. .+...+.+... ..
T Consensus 135 ~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 55555553332221 23345679999999999987433222 359999999999974 32 23334333333 33
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~--k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
.+.|+|||||= +++....+.+.-|... ++-. ......+.. .........+ +..+ -..+..+|..+++|++
T Consensus 212 ~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~~-~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 212 NQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSLC-ERDIEDPFGMIIEPLL 283 (746)
T ss_pred ccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHHh-hhhhhhhHHHHHHHHH
Confidence 37899999997 7777766665555443 2110 111111100 0000001111 1111 1224567777888877
Q ss_pred HHHHHhhhhc------------------CCCCceEEEEEeccCHHHHHHHHH-HHHccCcc-cCchhHHhhhhcChhhHH
Q 000169 1229 LRRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLR-VDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1229 LRRlKkDVek------------------dLPpKvE~vV~c~MSa~Qr~LYk~-I~~~~~l~-ld~~~ek~~l~kn~~~~a 1288 (1953)
.+-....+.. ..|........| +.......|.. +.....+. ++........ ......+
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f-~~e~~~~ 361 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDF-YEEVALK 361 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhh-ccccchh
Confidence 6554333211 011111111111 11111111110 01111110 0000000000 0000000
Q ss_pred H----HH-HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh--cCCeeEEeechhHHHHHHH
Q 000169 1289 K----VY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILE 1361 (1953)
Q Consensus 1289 k----~~-~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka--tGhKVLIFSQft~~LDILe 1361 (1953)
+ .. ..+...++.+..-+.|-.. + .....+|++.|.++|.+... ...|+|||+.++..++.|.
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~----------~-~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~ 430 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSL----------D-PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALK 430 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhc----------C-CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHH
Confidence 0 00 0001111111111111100 0 01246799999999988754 4569999999999999999
Q ss_pred HHHH-H--cCCeEEeecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchh
Q 000169 1362 EYLQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (1953)
Q Consensus 1362 d~L~-~--rGikylRLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~ 1430 (1953)
.+|. . .|++...+.| +|+..+..++|+.|++|+.+ +|++|.+|.+|||+..||.||.||..-||..
T Consensus 431 ~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 431 KWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHH
Confidence 9988 2 2455555554 67888999999999987776 7999999999999999999999999999999
Q ss_pred HHhhhhcccccCCcceEEEEE
Q 000169 1431 EEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.+||+|| +|.-..+-|.++.
T Consensus 508 mIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 508 MVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHHHhcc-ccccCCeEEEEEc
Confidence 9999999 8877666666554
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=266.89 Aligned_cols=304 Identities=18% Similarity=0.176 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.+||+|.+++..++. +.++|+..+||+|||+.++..+. . ..+.+|||+|.. |+.+|...+... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~----~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--V----LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--H----cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 699999999988775 78899999999999988754443 2 135799999975 777888888765 3555
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh-------HHHHHhhh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S-------KlsraLk~ 1147 (1953)
..+.+..... ...+ .....+..+++++|++.+... ...+...++++|||||||.+..... .+......
T Consensus 93 ~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 93 ACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 5555543222 1121 234456789999999988743 2345556789999999999864321 12222223
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.....++||||+-.....++...+.+..|.++.. .|.
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------------ 209 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------------ 209 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC------------------------------------
Confidence 44556899999986655555555444332221100 000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....++.
T Consensus 210 ------------r~nl~~~v~~---------------------------------------------------------- 219 (607)
T PRK11057 210 ------------RPNIRYTLVE---------------------------------------------------------- 219 (607)
T ss_pred ------------CCcceeeeee----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 220 ------------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred ------------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 0000111111222 13567899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|..+... +|++|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+++
T Consensus 280 ~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 280 EAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 999976555 7899999999999999999999999999999999999999999887766554
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=245.22 Aligned_cols=314 Identities=22% Similarity=0.245 Sum_probs=226.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--sl 1076 (1953)
.+.+.|.+++..++. +..+|.+.|||+|||+..+..|...+-..+..-.+||++|+.-+.+ ....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 456789999988876 8889999999999999987766543333455456799999985554 5555777653 57
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCch--hHHHHHhhhcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a~ 1151 (1953)
++.++.|+.+...... ....+++|+|+|++.++++.. .|.-....|+|+|||+++.|.. -.+...|..++..
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8888999887765443 235678999999999998754 3444467899999999998854 4677788888765
Q ss_pred e-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1152 R-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1152 ~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
+ .+|.|||-..+ ...| . |
T Consensus 236 rqt~LfsATMt~k-v~kL-------------------------------------------------------~-----r 254 (476)
T KOG0330|consen 236 RQTFLFSATMTKK-VRKL-------------------------------------------------------Q-----R 254 (476)
T ss_pred ceEEEEEeecchh-hHHH-------------------------------------------------------H-----h
Confidence 5 57778884211 1111 0 0
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
..+ +-|.+ |.-+ ..|+.+ ..|.+ -|+
T Consensus 255 ---asl--~~p~~------v~~s----~ky~tv-----------------------------------~~lkQ----~yl 280 (476)
T KOG0330|consen 255 ---ASL--DNPVK------VAVS----SKYQTV-----------------------------------DHLKQ----TYL 280 (476)
T ss_pred ---hcc--CCCeE------Eecc----chhcch-----------------------------------HHhhh----heE
Confidence 000 01111 1100 011111 00110 011
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
+.+ ..-|-..|..||.++ .|..+||||......+.+.-+|+..|+....|+|.|+...|..+++.|
T Consensus 281 fv~------------~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 281 FVP------------GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred ecc------------ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 111 112445677777764 568999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+++..+ +|++|++|++|||++.+|+||+||.|-+-..|+||.||+.|.|.... ++.|++
T Consensus 347 k~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~--~ItlVt 405 (476)
T KOG0330|consen 347 KAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGK--AITLVT 405 (476)
T ss_pred hccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcc--eEEEEe
Confidence 986655 89999999999999999999999999999999999999999995443 444444
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=261.90 Aligned_cols=304 Identities=20% Similarity=0.213 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
++||+|.+++.-++. +.+.|++.+||.|||+.+...+. + ..+.+|||+|.. |+.++...+... ++.+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 699999999988875 67899999999999998764432 2 246789999965 778898888875 4666
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh-------HHHHHhhh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S-------KlsraLk~ 1147 (1953)
..+++..... ..+. .....+..+|+++|++.+... ...+...++++|||||||.+..... .+......
T Consensus 81 ~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 6666654322 2221 234457789999999998643 3445667899999999999854221 23333334
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.....++||||+......+++..+.+-.+..|.. .|.
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~------------------------------------ 197 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD------------------------------------ 197 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC------------------------------------
Confidence 54555899999986655555554443322211100 000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....++.
T Consensus 198 ------------r~nl~~~v~~---------------------------------------------------------- 207 (591)
T TIGR01389 198 ------------RPNLRFSVVK---------------------------------------------------------- 207 (591)
T ss_pred ------------CCCcEEEEEe----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
...+...|..+|.. ..+.++||||.....++.|.++|...|+.+..+||+++.++|..++
T Consensus 208 ------------------~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 208 ------------------KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 00111222222322 1367899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.+++
T Consensus 268 ~~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~ 328 (591)
T TIGR01389 268 EDFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLY 328 (591)
T ss_pred HHHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEec
Confidence 999976544 7999999999999999999999999999999999999999999887775543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=257.62 Aligned_cols=315 Identities=22% Similarity=0.296 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
...|.|..++..++. +...|....||+|||+..+..+...+.. .....++||++|+. |..|-.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 678999999988876 7888999999999999988877666542 22222389999998 66677777777754
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh--HHHHHhhhcc
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L~ 1149 (1953)
.+.++.+.|+.....+.. .... ..+|||.|+..++... ..|...+..++|+|||.+|.+... .+...+..++
T Consensus 127 ~~~~~~~i~GG~~~~~q~~--~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIE--ALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred CCccEEEEECCCCHHHHHH--HHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 577777777766555442 2333 4999999999998653 345666789999999999987532 3444555554
Q ss_pred c-ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1150 a-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
. ...++.|||--. . ++.+..-++ ..| ..
T Consensus 204 ~~~qtllfSAT~~~-~---i~~l~~~~l--------------~~p---------------------------------~~ 232 (513)
T COG0513 204 PDRQTLLFSATMPD-D---IRELARRYL--------------NDP---------------------------------VE 232 (513)
T ss_pred cccEEEEEecCCCH-H---HHHHHHHHc--------------cCC---------------------------------cE
Confidence 4 457888998522 1 111111000 000 00
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
+..-........+.....++.|.
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~--------------------------------------------------------- 255 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVE--------------------------------------------------------- 255 (513)
T ss_pred EEEccccccccccCceEEEEEeC---------------------------------------------------------
Confidence 00000000000000111111110
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
....|+.+|..+|... ...++||||.....++.|...|..+|+++..|||++++++|.+.++
T Consensus 256 ----------------~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 256 ----------------SEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred ----------------CHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 0013677777777653 2337999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
.|+++... +|++|+++++|||++.+++||+||+|.++..|+||+||++|.|.+.....+
T Consensus 318 ~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 318 KFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred HHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEE
Confidence 99976666 799999999999999999999999999999999999999999977755444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=270.19 Aligned_cols=361 Identities=17% Similarity=0.208 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
..||+||.++|..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||.. |+.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4799999999988776554 4467899999999999999999888775 34557899999965 8999999999874321
Q ss_pred e-EE--EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh-------cccccCccEEEcccccccCCc---------
Q 000169 1077 S-CI--YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR--------- 1137 (1953)
Q Consensus 1077 k-Vv--vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s-------~L~kikWd~VIIDEAHrLKN~--------- 1137 (1953)
. .+ +|. ..... .........|+|+|+.++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~-i~~L~-----~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 491 DQTFASIYD-IKGLE-----DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccchhhhhc-hhhhh-----hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 1 11 121 11101 01123457899999999876421 123357899999999996310
Q ss_pred --------hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1138 --------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1138 --------~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
.++..+.|..|. ..+|+|||||..++ ...|+.|+....
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----------------------~~~FG~pv~~Ys----------- 610 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----------------------TEIFGEPVYTYS----------- 610 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----------------------hHHhCCeeEEee-----------
Confidence 133344444444 58899999997432 112223322210
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHhhhhcCCCCceEEEEE----eccC-HHHHHHHHHHHHccC-cccCchhHHhhhhc
Q 000169 1210 TEKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIVLR----CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQK 1282 (1953)
Q Consensus 1210 eEek~liI~RLhklL-rPFmLRRlKkDVekdLPpKvE~vV~----c~MS-a~Qr~LYk~I~~~~~-l~ld~~~ek~~l~k 1282 (1953)
+...+ ..+++ ...|+....... +... ..+...|+....... ..+. .+.
T Consensus 611 ----------l~eAI~DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~----- 665 (1123)
T PRK11448 611 ----------YREAVIDGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV----- 665 (1123)
T ss_pred ----------HHHHHhcCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH-----
Confidence 00000 01110 001222211100 0000 011111211100000 0000 000
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHH
Q 000169 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1361 (1953)
Q Consensus 1283 n~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILe 1361 (1953)
.+. ...+. +.+.+ ..--+ .++..++..+.. .+.|+||||....+++.|.
T Consensus 666 --~~~---~~~~~------~~vi~------------------~~~~~-~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 --DFE---VEDFN------RRVIT------------------ESFNR-VVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred --hhh---HHHHH------HHHhh------------------HHHHH-HHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 000 00000 00000 00000 011222222211 2369999999999999888
Q ss_pred HHHHHc------CC---eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHH
Q 000169 1362 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1432 (1953)
Q Consensus 1362 d~L~~r------Gi---kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~ 1432 (1953)
+.|... ++ .+..++|+++ ++..++++|.++ .+..+|++++.+++|+|++.+++||+++++-++..|.
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 877643 22 3567999985 578899999863 3447899999999999999999999999999999999
Q ss_pred hhhhcccccCC---cceEEEEEEehhhhhh
Q 000169 1433 QAVARAHRIGQ---KREVKVIYMEAVVDKI 1459 (1953)
Q Consensus 1433 QAiGRAhRIGQ---KKeV~VyrLvTVEEkI 1459 (1953)
|++||+.|+.- |..+.||.++.+-+.+
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 99999999865 6668999988765443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=262.67 Aligned_cols=308 Identities=17% Similarity=0.138 Sum_probs=211.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..+||+|.++|..++. +.+.|+..+||.|||+.+...+.. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 3799999999998876 788999999999999988665532 136799999976 66556666654 2566
Q ss_pred EEEEecchhhH--hHHHHHHHh--hccccEEEEeHHHHHhh---hhcc---c-ccCccEEEcccccccCCchhH---HHH
Q 000169 1078 CIYYVGAKDQR--SRLFSQEVA--ALKFNVLVTTYEFIMYD---RSKL---S-KVDWKYIIIDEAQRMKDRESV---LAR 1143 (1953)
Q Consensus 1078 Vvvy~Gs~deR--k~l~~qei~--~~~fdVVITTYEsL~kd---~s~L---~-kikWd~VIIDEAHrLKN~~SK---lsr 1143 (1953)
+..+.+..... ..++. ... .+.++||++|++.+... ...+ . ...+.+|||||||.+-..... -++
T Consensus 527 Aa~L~s~~s~~eq~~ilr-~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQ-ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred EEEEECCCCHHHHHHHHH-HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 66666554322 22221 122 26789999999998642 1122 1 234789999999998643211 112
Q ss_pred ----HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1144 ----DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1144 ----aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
....+....+++||||.......++...|.+..+.+|. ..|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc---------------------------
Confidence 22345556689999998666655655544433222211 00100
Q ss_pred HHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
|.....++. . . .
T Consensus 653 ---------------------pNL~y~Vv~-k-~---k------------------------------------------ 664 (1195)
T PLN03137 653 ---------------------PNLWYSVVP-K-T---K------------------------------------------ 664 (1195)
T ss_pred ---------------------cceEEEEec-c-c---h------------------------------------------
Confidence 100000000 0 0 0
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCC
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs 1379 (1953)
..+..|..++.. ...+...||||..+..++.|..+|...|+.+..+||+++
T Consensus 665 ----------------------------k~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 665 ----------------------------KCLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred ----------------------------hHHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 000111111111 012457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1380 ~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.++|..++++|..++.. +|++|.++|+|||++++++||+||+|.+...|.|++|||+|.|....|.+|+-
T Consensus 716 ~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 716 PAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred HHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999976555 78999999999999999999999999999999999999999999988877663
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=251.32 Aligned_cols=308 Identities=17% Similarity=0.234 Sum_probs=206.2
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|.++|.+++..++.-... .-+.||..+||+|||++++..+...+. ....+||++|+. |..||.++|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999998875432 236799999999999988766665554 235799999987 67889999999987
Q ss_pred -CCeEEEEecchhhHh-HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc---
Q 000169 1075 -SVSCIYYVGAKDQRS-RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR--- 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk-~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~--- 1149 (1953)
++++.+++|+..... ......+..+..+|||+|+..+.... .-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~~ 385 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQGGF 385 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhcccCC
Confidence 578888888654322 11222345677899999999876432 2246789999999997421 2222222222
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.|++||||+...+. +.. ++. +.
T Consensus 386 ~~~~l~~SATp~prtl~----l~~------~~~-------l~-------------------------------------- 410 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLA----LTV------YGD-------LD-------------------------------------- 410 (630)
T ss_pred CCCEEEEeCCCCcHHHH----HHh------cCC-------cc--------------------------------------
Confidence 56789999999764321 100 000 00
Q ss_pred HHHHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1230 RRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1230 RRlKkDVekdLPpKv--E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..+...+|... .....+.-..
T Consensus 411 ----~~~i~~~p~~r~~i~~~~~~~~~----------------------------------------------------- 433 (630)
T TIGR00643 411 ----TSIIDELPPGRKPITTVLIKHDE----------------------------------------------------- 433 (630)
T ss_pred ----eeeeccCCCCCCceEEEEeCcch-----------------------------------------------------
Confidence 00001122110 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh--------HHHHHHHHHHHH--cCCeEEeecCC
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDGT 1377 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft--------~~LDILed~L~~--rGikylRLDGs 1377 (1953)
+ ..+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||.
T Consensus 434 ---------------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~ 491 (630)
T TIGR00643 434 ---------------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGR 491 (630)
T ss_pred ---------------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 0 011111222234577888888654 233344455543 47889999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.++|..++++|..+..+ +|++|.+.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.+++
T Consensus 492 m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999986655 799999999999999999999999985 7788999999999999888776665
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=250.52 Aligned_cols=306 Identities=17% Similarity=0.204 Sum_probs=205.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+|.++|..++..+..-... ..+.||..+||+|||+.++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988874432 236799999999999998776655443 234799999987 778899999999865
Q ss_pred --CeEEEEecchhh--HhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-cc
Q 000169 1076 --VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RC 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~de--Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a 1150 (1953)
+++.+++|.... +...+ .....+..+|+|+|+..+.... .-.+..+|||||+|++.- .....+... ..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~ 409 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALREKGEN 409 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHhcCCC
Confidence 788888887543 33222 2345567999999998875421 223678999999999832 222233322 34
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.+.|++||||+...+. +..+ +. ..
T Consensus 410 ~~iL~~SATp~prtl~----~~~~------g~-----------------~~----------------------------- 433 (681)
T PRK10917 410 PHVLVMTATPIPRTLA----MTAY------GD-----------------LD----------------------------- 433 (681)
T ss_pred CCEEEEeCCCCHHHHH----HHHc------CC-----------------Cc-----------------------------
Confidence 6789999999643211 1000 00 00
Q ss_pred HHHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1231 RlKkDVekdLPpKv--E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
-.+...+|... .....+.
T Consensus 434 ---~s~i~~~p~~r~~i~~~~~~--------------------------------------------------------- 453 (681)
T PRK10917 434 ---VSVIDELPPGRKPITTVVIP--------------------------------------------------------- 453 (681)
T ss_pred ---eEEEecCCCCCCCcEEEEeC---------------------------------------------------------
Confidence 00001122110 0000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhH--------HHHHHHHHHHHc--CCeEEeecCCC
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTT 1378 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~--------~LDILed~L~~r--GikylRLDGsT 1378 (1953)
..+...+...+.+....+++++|||.... .+..+.+.|... ++++..+||.+
T Consensus 454 ------------------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m 515 (681)
T PRK10917 454 ------------------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRM 515 (681)
T ss_pred ------------------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 00001111122222357888999987432 234455566544 57899999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.++|..++++|.++..+ +|+||.+.++|||++++++||++|++. ....+.|+.||++|-|.+..|.++.
T Consensus 516 ~~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 999999999999986655 799999999999999999999999985 5788999999999999887776654
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=253.13 Aligned_cols=304 Identities=17% Similarity=0.227 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.++.|+|..++..+..-...+ .+.|++.+||+|||.+++..+...+. . ...+||+||+. |+.|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D--GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h--CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 468999999999988754332 46799999999999988766554443 2 25799999987 678899999998865
Q ss_pred --CeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1076 --VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+++.++.|... ++.... ..+..+..+|||+|+..+.++ +.-.+..+|||||+|++.. .....+..+. .
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~ 599 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTS 599 (926)
T ss_pred CCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHHhcCCC
Confidence 45556665432 333332 234456789999999765432 2223678999999999742 3344455553 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...|+|||||+...+.. ++..+..+.++.
T Consensus 600 ~~vL~~SATpiprtl~~--~l~g~~d~s~I~------------------------------------------------- 628 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHM--SMSGIRDLSIIA------------------------------------------------- 628 (926)
T ss_pred CCEEEEecCCCHHHHHH--HHhcCCCcEEEe-------------------------------------------------
Confidence 46899999997543221 111100000000
Q ss_pred HHHhhhhcCCCCceE---EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1231 RRVEDVEGSLPPKVS---IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE---~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|+... ....+..+.
T Consensus 629 ---------~~p~~R~~V~t~v~~~~~----------------------------------------------------- 646 (926)
T TIGR00580 629 ---------TPPEDRLPVRTFVMEYDP----------------------------------------------------- 646 (926)
T ss_pred ---------cCCCCccceEEEEEecCH-----------------------------------------------------
Confidence 000000 000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqe 1385 (1953)
..+...++..+ ..+.+|+|||+....++.+.+.|... ++++..+||.|+.++|.+
T Consensus 647 ----------------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~ 703 (926)
T TIGR00580 647 ----------------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEE 703 (926)
T ss_pred ----------------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Confidence 00011112222 35789999999999999999999874 789999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|..++.+ +|+||.+.++|||++.+++||++|.+ +....+.|+.||++|-|.+..|.++.
T Consensus 704 im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 704 VMLEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 99999987666 89999999999999999999999996 46678999999999999877776554
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=246.34 Aligned_cols=318 Identities=17% Similarity=0.138 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Pslk 1077 (1953)
+|+++|.+++..+.. +.+.|++..||+|||+.++..+...+.. .....+|||+|+. |..+-..+|.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988775 8899999999999999987776655532 2335789999987 6667777888875 3578
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCC-chhHHHHHhhhc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1148 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~L 1148 (1953)
+.+|.|......+ .......+|+|||++++.... ..| .+.++|||||+|.+.+ ..+.+...+.++
T Consensus 111 v~~~~Gdt~~~~r----~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 111 PATYDGDTPTEER----RWAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEeCCCCHHHH----HHHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888887543322 122345799999999886321 112 2568999999999965 223333333322
Q ss_pred -------c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1149 -------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1149 -------~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
. ....+++|||-- +..++.. .+ +..|+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~--n~~~~~~---~l--------------~g~~~~~i~---------------------- 223 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTA--DPAAAAS---RL--------------IGAPVVAVT---------------------- 223 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCC--CHHHHHH---HH--------------cCCCeEEEC----------------------
Confidence 1 235789999952 2233211 11 111111000
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
....|... ...++.+ .. +. + ... . ...
T Consensus 224 ----------------~~~~~~~~~~~~~~~p-~~-----~~-~--------~~~---~---~~~--------------- 251 (742)
T TIGR03817 224 ----------------EDGSPRGARTVALWEP-PL-----TE-L--------TGE---N---GAP--------------- 251 (742)
T ss_pred ----------------CCCCCcCceEEEEecC-Cc-----cc-c--------ccc---c---ccc---------------
Confidence 00011111 1111110 00 00 0 000 0 000
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--------CCeE
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVY 1371 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--------Giky 1371 (1953)
.| . .....+..+|.. +...+.++||||+.+..++.|..+|... +.++
T Consensus 252 -~r-----------------~---~~~~~~~~~l~~----l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 252 -VR-----------------R---SASAEAADLLAD----LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred -cc-----------------c---chHHHHHHHHHH----HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 00 0 000113333333 3345789999999999999999988754 5677
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1372 lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
..++|+++.++|.++.++|.++... +|++|+++++|||+..+|+||+||.|-+...|+||+||++|.|....+.+
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 8899999999999999999975554 79999999999999999999999999999999999999999998765543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=250.47 Aligned_cols=325 Identities=17% Similarity=0.155 Sum_probs=202.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHH-----
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKS----- 1067 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~----- 1067 (1953)
.|+|+|..++..+.. +.++|++.+||+|||+.++..+...+.... ....+|+|+|+. |..++..
T Consensus 32 ~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 32 TFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 699999999987654 789999999999999998765554332211 123589999986 5555554
Q ss_pred --HHHHHC-------CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hccc--ccCccEEEccccccc
Q 000169 1068 --ELHKWL-------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLS--KVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1068 --Ef~Kwa-------PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~--kikWd~VIIDEAHrL 1134 (1953)
++.+++ +.+.+.+++|......+. ......++|+|||++++.... ..+. -.+.++|||||+|.+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 333443 467888888865443221 123346799999999885321 1110 125689999999999
Q ss_pred CCch--hHHHHHhh---hc--ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1135 KDRE--SVLARDLD---RY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1135 KN~~--SKlsraLk---~L--~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
.+.. ..+...+. .+ ....+|+||||. .++.++.. ||...... +...
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~r------ 237 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEPR------ 237 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCCC------
Confidence 7532 22222222 22 234689999996 22333322 22110000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
++.+ +...........+.++.... +.
T Consensus 238 ------------------~~~i------v~~~~~k~~~i~v~~p~~~l----~~-------------------------- 263 (876)
T PRK13767 238 ------------------DCEI------VDARFVKPFDIKVISPVDDL----IH-------------------------- 263 (876)
T ss_pred ------------------ceEE------EccCCCccceEEEeccCccc----cc--------------------------
Confidence 0000 00000000011111110000 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
. .. ......+...|.++...++++||||+.+..++.+...|...
T Consensus 264 -------------------------~-----~~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 264 -------------------------T-----PA------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -------------------------c-----cc------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 0 00 00001122233344456789999999999999999988763
Q ss_pred ------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1368 ------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1368 ------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
+..+..+||+++.++|..+.+.|+++... +|++|.++++|||++.+|+||+||+|.+...|+||+||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 46788899999999999999999976544 799999999999999999999999999999999999999986
Q ss_pred -CCcceEEEEE
Q 000169 1442 -GQKREVKVIY 1451 (1953)
Q Consensus 1442 -GQKKeV~Vyr 1451 (1953)
|....-.++.
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4444444443
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=255.33 Aligned_cols=304 Identities=18% Similarity=0.214 Sum_probs=208.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+..... ....+|||||+. |+.|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 36899999999888764332 356799999999999987644433332 345799999987 667788888887654
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+++.++.|.. ..+...+. ....+..+|||+|++.+..+ +.-.++++|||||+|++.. .....+..+. .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 4555565533 33333222 23346789999999876532 2224688999999999842 2334455543 4
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...|++||||+...+.-. +..+.++.++
T Consensus 749 ~qvLl~SATpiprtl~l~--~~gl~d~~~I-------------------------------------------------- 776 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMA--MSGMRDLSII-------------------------------------------------- 776 (1147)
T ss_pred CcEEEEcCCCCHHHHHHH--HhhCCCcEEE--------------------------------------------------
Confidence 468999999976543211 0011011000
Q ss_pred HHHhhhhcCCCCceE---EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1231 RRVEDVEGSLPPKVS---IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE---~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..|+... ..+....
T Consensus 777 --------~~~p~~r~~v~~~~~~~------------------------------------------------------- 793 (1147)
T PRK10689 777 --------ATPPARRLAVKTFVREY------------------------------------------------------- 793 (1147)
T ss_pred --------ecCCCCCCCceEEEEec-------------------------------------------------------
Confidence 0000000 0000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqe 1385 (1953)
........++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+
T Consensus 794 --------------------~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~ 852 (1147)
T PRK10689 794 --------------------DSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 (1147)
T ss_pred --------------------CcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHH
Confidence 00001122333333 4678999999999999999999887 789999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.+|.+++.+ +|++|+++++|||++.+++||+.+++ |+...|.|+.||++|.|.+..|.+++
T Consensus 853 im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 853 VMNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHHHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 99999987666 79999999999999999999988876 68889999999999999887776554
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=222.78 Aligned_cols=273 Identities=15% Similarity=0.202 Sum_probs=192.8
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc-
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR- 1405 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr- 1405 (1953)
-.|+.+|.-+|. |.--..|.|||.+..+....|.-+|..-|++.|.|+|.++..-|..+|++||.+ .+-+||+|+
T Consensus 252 ~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccC
Confidence 347666665554 444567899999999999999999999999999999999999999999999973 333677777
Q ss_pred -------------------------c---------cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 -------------------------A---------AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 -------------------------A---------GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
. .++|||++.+++||+||.|-++..|++|+||+.|-|.+..+.-|.
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 1 246999999999999999999999999999999999888876554
Q ss_pred EehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHH---HHHH
Q 000169 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEER---RMTL 1528 (1953)
Q Consensus 1452 LvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eER---r~~L 1528 (1953)
.-. +..| .+++|...-..- ..+...+++.-.|+....+.-| +..+
T Consensus 408 ~P~------------------------e~~g----~~~le~~~~d~~----~~~~~qilqPY~f~~eevesfryR~eD~~ 455 (569)
T KOG0346|consen 408 SPK------------------------EEFG----KESLESILKDEN----RQEGRQILQPYQFRMEEVESFRYRAEDAL 455 (569)
T ss_pred cch------------------------HHhh----hhHHHHHHhhHH----hhcCccccccccchHHHHHHHHHHHHHHH
Confidence 321 1112 134554443211 2233448888888877555444 1222
Q ss_pred HHH---HhhhhhhhccccCCCCHHHHHHHHcCCHHHHHHHhhhhhhcCcchhccccccchHHHhhchHHHHHHHhhhcCC
Q 000169 1529 ETL---LHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605 (1953)
Q Consensus 1529 e~L---Le~ee~~~e~~~~v~~~EeLN~~lARs~eE~~lf~~mD~er~~~~~l~~~~elP~~l~~~~~e~~~~~~~~~k~ 1605 (1953)
++. .-.+.+.+|...+.+..|.|...++.++.|+.++ ++|..........|...||+||.. ++.....+.
T Consensus 456 ravTkvAvreaR~kEikqEll~SeKLK~~FeeNprdl~lL-rhDkpl~~~~~qphL~dvpeYlvp------~alr~~~~~ 528 (569)
T KOG0346|consen 456 RAVTKVAVREARLKEIKQELLNSEKLKAFFEENPRDLQLL-RHDKPLRLAIVQPHLKDVPEYLVP------EALRGVVKS 528 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcChHHHHHh-hcCCcccccccchhhccCchhhCC------HHHhhcccc
Confidence 222 2235666777778899999999999999999999 888888777778899999999953 222222111
Q ss_pred --CCcccccccccccCcchhhhhhhcCCCCCCCCCCccc
Q 000169 1606 --PSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEV 1642 (1953)
Q Consensus 1606 --~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~~~~k~~ 1642 (1953)
..+.++.++......+-.++-|+-.|+++|++|++.+
T Consensus 529 ~k~r~~g~~~~r~n~~rk~~kp~r~f~~kg~K~~pl~~~ 567 (569)
T KOG0346|consen 529 VKTRAPGFSPFRNNKRRKVQKPLRKFQPKGGKRDPLKTF 567 (569)
T ss_pred cccccCCCccchhhhhhhccCchhhcCCCCCCCCccccc
Confidence 2335555654442111122333344788888888754
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=223.11 Aligned_cols=355 Identities=21% Similarity=0.236 Sum_probs=244.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-----P~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.+.+.|...|...+. +...|-|.-||+|||+..+..++..+. +..|. -+|||.|+. |..|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~-r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALY-RLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHH-HcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577788888877775 777788999999999998886665443 23333 479999998 5556555555543
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCchh--HHHHHhh
Q 000169 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD 1146 (1953)
Q Consensus 1074 --PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk 1146 (1953)
.++.+-.+.|+.+.... ..+....+|+|||++++..+. ..|.--...++|+|||+||..... .+-..+.
T Consensus 166 k~h~fSaGLiiGG~~~k~E----~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE----LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHHH----HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 35666666677664322 244678899999999998764 446666789999999999976443 3444555
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.++.. .-||+|||+..+ ..+|.- |++-+|.+..
T Consensus 242 ~lP~~RQTLLFSATqt~s-vkdLaR-LsL~dP~~vs-------------------------------------------- 275 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQTKS-VKDLAR-LSLKDPVYVS-------------------------------------------- 275 (758)
T ss_pred hCChhheeeeeecccchh-HHHHHH-hhcCCCcEEE--------------------------------------------
Confidence 56544 479999999433 333322 1112221111
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEe---ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRC---RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c---~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
+.. .-++. .|+
T Consensus 276 ----------------------vhe~a~~atP~--------------------------------------------~L~ 289 (758)
T KOG0343|consen 276 ----------------------VHENAVAATPS--------------------------------------------NLQ 289 (758)
T ss_pred ----------------------EeccccccChh--------------------------------------------hhh
Confidence 000 00000 000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~ 1380 (1953)
+. -.++....|+.+|-..+... -..|.|||........++.+.|... |++...|+|.+++
T Consensus 290 Q~----------------y~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q 351 (758)
T KOG0343|consen 290 QS----------------YVIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQ 351 (758)
T ss_pred he----------------EEEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhH
Confidence 00 00122233555555555442 3468999998888888888877654 8999999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhh
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (1953)
..|..+..+|.. .-.++|++|+++++|||++.+|+||-||.|-+...|+||.||+.|.+-..+..++..
T Consensus 352 ~~R~ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~-------- 420 (758)
T KOG0343|consen 352 KKRIEVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT-------- 420 (758)
T ss_pred HHHHHHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc--------
Confidence 999999999986 334799999999999999999999999999999999999999999999999877754
Q ss_pred hhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhh
Q 000169 1461 SHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER 1537 (1953)
Q Consensus 1461 s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~ 1537 (1953)
.|-||.++.+|++.|..+...-|+.++ -.+-+..|++||....+
T Consensus 421 ---------------------------psEeE~~l~~Lq~k~I~i~~i~i~~~k------~~~i~~~l~~ll~~~~e 464 (758)
T KOG0343|consen 421 ---------------------------PSEEEAMLKKLQKKKIPIKEIKIDPEK------LTSIRNKLEALLAKDPE 464 (758)
T ss_pred ---------------------------chhHHHHHHHHHHcCCCHHhhccCHHH------hhhHHHHHHHHHhhCHH
Confidence 355677777777766555444444332 12456678888876543
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=230.49 Aligned_cols=346 Identities=18% Similarity=0.197 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|-|...+.|++.-.+ ..+..+++..||+|||+.....|..++..+ -.+-++|||||.. |+.|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 699999999999987655 233457899999999999888777777544 3445789999987 677889999999
Q ss_pred CCC--CeEEEEecchhhHhHHHHH--HHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCchhHHH--H
Q 000169 1073 LPS--VSCIYYVGAKDQRSRLFSQ--EVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLA--R 1143 (1953)
Q Consensus 1073 aPs--lkVvvy~Gs~deRk~l~~q--ei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~SKls--r 1143 (1953)
+++ +.|+...|-...+.+.... .......||+|+|+++++.+... |.--+..|+|||||+||.+....-| .
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 5666667766555443221 11234569999999999988543 3344778999999999976443322 1
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhkl 1223 (1953)
.+.......++.+++ .|..+..-.-|..|... ...|.+ ....|.++
T Consensus 319 v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~-----------------------~~~~l~kL 364 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGK-----------------------LYPPLWKL 364 (620)
T ss_pred HHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCC-----------------------cCchhHhh
Confidence 111222222221111 11111100001100000 000000 00011111
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000169 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1224 LrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK 1303 (1953)
+-+ ..+...|.|. ..|+
T Consensus 365 ~~s--------atLsqdP~Kl------------------------------------------------------~~l~- 381 (620)
T KOG0350|consen 365 VFS--------ATLSQDPSKL------------------------------------------------------KDLT- 381 (620)
T ss_pred hcc--------hhhhcChHHH------------------------------------------------------hhhh-
Confidence 111 1111111110 0000
Q ss_pred hcCCCCCCCCC---------ccccchhhhhhcc-cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCC
Q 000169 1304 TCNHPLLNYPY---------FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1369 (1953)
Q Consensus 1304 iCNHP~L~~p~---------l~dls~d~Li~~S-GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGi 1369 (1953)
.++|-++... ...+....++... -|-..+..++.. ....++|+|+........|...|+ ...+
T Consensus 382 -l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 382 -LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred -cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 1111111000 0000000111111 133344444443 357899999999888777777766 3466
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
++-.++|....+.|.+++.+|+.++.. +||+++++++|+|+..++.||+||+|-.-..|+||+||+.|.||...+.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 677799999999999999999987766 7899999999999999999999999999999999999999999998763
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=234.70 Aligned_cols=310 Identities=19% Similarity=0.132 Sum_probs=197.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
+|+|+|.+++.-+ +..+.|.|++.+||+|||+.+...+...+. ..+++|||||.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999753 335779999999999999998666555443 346899999976 88889999988754 678
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCch--hHHHHHhhhc----c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY----R 1149 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L----~ 1149 (1953)
+..+.|..+.... .....+|+|+|++.+...... ..-...++|||||+|.+.+.. ..+-..+..+ .
T Consensus 97 v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 8888886543321 124579999999977432111 111256999999999996532 2222222222 3
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.++||||.- +..++..+++ ...|.+ . .+|+
T Consensus 171 ~~qii~lSATl~--n~~~la~wl~---~~~~~~------~----------------------------------~rpv-- 203 (737)
T PRK02362 171 DLQVVALSATIG--NADELADWLD---AELVDS------E----------------------------------WRPI-- 203 (737)
T ss_pred CCcEEEEcccCC--CHHHHHHHhC---CCcccC------C----------------------------------CCCC--
Confidence 346899999962 3444433222 111100 0 0000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
.....+... ....... ... .
T Consensus 204 -------------~l~~~v~~~---------------~~~~~~~--~~~------------------------------~ 223 (737)
T PRK02362 204 -------------DLREGVFYG---------------GAIHFDD--SQR------------------------------E 223 (737)
T ss_pred -------------CCeeeEecC---------------Ceecccc--ccc------------------------------c
Confidence 000000000 0000000 000 0
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----------------------
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r---------------------- 1367 (1953)
+ ....+...+ .++......+.++||||..+..++.++..|...
T Consensus 224 ~--------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 224 V--------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred C--------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 0 000011111 122222346789999999988877766666432
Q ss_pred --------------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC-----C
Q 000169 1368 --------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----P 1424 (1953)
Q Consensus 1368 --------------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD-----p 1424 (1953)
...+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++..+||. || .
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~ 365 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQ 365 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCce
Confidence 13466789999999999999999975544 7999999999999999988886 77 5
Q ss_pred CCCchhHHhhhhcccccCCcce
Q 000169 1425 DPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1425 pWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
|.+...|.|++|||+|.|....
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCC
Confidence 7889999999999999998643
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-21 Score=224.68 Aligned_cols=332 Identities=21% Similarity=0.356 Sum_probs=230.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaP--s 1075 (1953)
..|||||.+.|..|.-.- .-+.||+..++|.|||+..+..++... +.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 379999999999886411 124689999999999999877665432 47899998874 9999999999973 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------hhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
-.++.|.....++ ......||||||.++... ..+|....|.++|+||.|.+ +..-..+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHH
Confidence 4455555544332 345678999999998643 35677789999999999998 334444555
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
.-..+.+.|+||||-+..+ |=..=|||| .|.++.. .|.+-..
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-----------------------nWmdL~~------------ 486 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-----------------------NWMDLQK------------ 486 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----------------------cHHHHHh------------
Confidence 5567888999999988764 111223554 4444320 1111000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+ ..+-.-....|||+||+.-...|-..... . .+ |
T Consensus 487 ---------k---GhIA~VqCaEVWCpMt~eFy~eYL~~~t~-----------k--------------r~------l--- 520 (776)
T KOG1123|consen 487 ---------K---GHIAKVQCAEVWCPMTPEFYREYLRENTR-----------K--------------RM------L--- 520 (776)
T ss_pred ---------C---CceeEEeeeeeecCCCHHHHHHHHhhhhh-----------h--------------hh------e---
Confidence 0 12233345679999999655544321100 0 00 0
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
| .+....||....-++......|+|+|||+...- .|.+|--..|-+| |.|.|++.+|.
T Consensus 521 -----L------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf---ALk~YAikl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 -----L------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF---ALKEYAIKLGKPF--IYGPTSQNERM 578 (776)
T ss_pred -----e------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHH---HHHHHHHHcCCce--EECCCchhHHH
Confidence 0 112235888888888888889999999997654 4455555556666 78999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcc----eEEEEEEeh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKR----EVKVIYMEA 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKK----eV~VyrLvT 1454 (1953)
++++.|.. +..+..|.|| ++|...+||+.|+++|-..+.. +-.++.||.||+.|.-..+ .+..|-|++
T Consensus 579 ~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 99999986 5556666665 9999999999999999998886 7778999999999986332 245566665
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=219.85 Aligned_cols=341 Identities=20% Similarity=0.249 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--------hCCCCC-eEEEechHHH-HHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--------KGNYGP-HLIIVPNAVL-VNWKSEL 1069 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--------kg~~GP-~LIVVP~SLL-~QW~~Ef 1069 (1953)
..-|.|..++--++. +.+.|...|+|+|||...+..|...+.. +...|| .+|++|+.-| .|...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 455788888876554 7778999999999997765544433322 222344 5888899854 5566777
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1070 ~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
.+|.. +++++...|+...-.+-+ -....++|+|.|+..|+... ..|..-...|||+|||.+|-...
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f---qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg------- 412 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF---QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG------- 412 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh---hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc-------
Confidence 77763 366776666654332211 12457899999999998653 34555578899999999985421
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
|....-=+|+.-|..| .... .+....++ ++ +.
T Consensus 413 --fE~dv~~iL~~mPssn---------------------------------~k~~----tde~~~~~------~~---~~ 444 (673)
T KOG0333|consen 413 --FEPDVQKILEQMPSSN---------------------------------AKPD----TDEKEGEE------RV---RK 444 (673)
T ss_pred --ccHHHHHHHHhCCccc---------------------------------cCCC----ccchhhHH------HH---Hh
Confidence 1111100111111111 0000 00000010 01 11
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
.|.-. ---.........|++.-..+.+.+...-....... .. -
T Consensus 445 ~~~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~-----~g-----------------------k 487 (673)
T KOG0333|consen 445 NFSSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGS-----AG-----------------------K 487 (673)
T ss_pred hcccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEecc-----CC-----------------------C
Confidence 11100 00011223344555544444443322211100000 00 0
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
++|.+. ..-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+.
T Consensus 488 ~~~rve-------Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 488 PTPRVE-------QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred Cccchh-------eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 111110 0112345677888899988864 4678999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+|..|+.+..+ +|++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+.-|+
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEe
Confidence 99999987777 8999999999999999999999999999999999999999999998876654
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=213.71 Aligned_cols=319 Identities=20% Similarity=0.275 Sum_probs=222.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCC--C--CeEEEechHHHHH----HHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNY--G--PHLIIVPNAVLVN----WKSEL 1069 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~--G--P~LIVVP~SLL~Q----W~~Ef 1069 (1953)
..+.|-|..++..++. +....+-..||+|||+..+..+...+..+ ... + -.|||.|+.-+.- -...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3688999999988876 77778888999999999999888776332 222 2 3599999985443 34456
Q ss_pred HHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCch--hHHHH
Q 000169 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1070 ~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
..+++++.+..+.|+......+- .+.....+|+|.|++.+..- ...+.-....++|+|||+++...+ ..+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 66779999999999866554432 35567789999999988643 334655578899999999997543 34455
Q ss_pred HhhhcccceeEE-ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLL-LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1144 aLk~L~a~~RLL-LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.|..++-.+|-+ .|||-.+. ..+| ..
T Consensus 181 ILs~LPKQRRTGLFSATq~~~-v~dL---~r------------------------------------------------- 207 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQE-VEDL---AR------------------------------------------------- 207 (567)
T ss_pred HHHhcccccccccccchhhHH-HHHH---HH-------------------------------------------------
Confidence 555666555543 46653111 0000 00
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
+-|| ..+...|... . .
T Consensus 208 ----aGLR-----------Npv~V~V~~k---------------~----------~------------------------ 223 (567)
T KOG0345|consen 208 ----AGLR-----------NPVRVSVKEK---------------S----------K------------------------ 223 (567)
T ss_pred ----hhcc-----------Cceeeeeccc---------------c----------c------------------------
Confidence 0000 0011111000 0 0
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~ 1380 (1953)
.+.|.-.. .....+...-|+..|..+|.. ....|+|||.......++....|... .+.++.+||.++.
T Consensus 224 --~~tPS~L~------~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 224 --SATPSSLA------LEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred --ccCchhhc------ceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00000000 000112234577778777776 56789999999888888888777654 7789999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
..|..+++.|...... +|++|+++++|||++++|.||.||||-+|..+.||.||+.|.|......||.+-
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 9999999999973333 799999999999999999999999999999999999999999999888777653
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-19 Score=226.06 Aligned_cols=303 Identities=19% Similarity=0.178 Sum_probs=192.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-sl 1076 (1953)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.+++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987666555432 35789999976 77888899888653 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhh---c-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR---Y- 1148 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~---L- 1148 (1953)
++....|..+.... .....+|+|+|++.+..... ...-.++++|||||+|.+.+.. ..+...+.. +
T Consensus 94 ~v~~~~G~~~~~~~------~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPD------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChh------hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 67677775443211 12357999999987643211 1112357899999999996432 122222222 2
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
...+.++||||+- +.. .|.+|+.......
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~------------------------------- 196 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS------------------------------- 196 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC-------------------------------
Confidence 2346799999962 223 3344443211000
Q ss_pred HHHHHhhhhcCCCCceEE-EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1229 LRRRVEDVEGSLPPKVSI-VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~-vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..-|..... ++... .+| .+.. .
T Consensus 197 ---------~~r~vpl~~~i~~~~------~~~----------~~~~-~------------------------------- 219 (674)
T PRK01172 197 ---------NFRPVPLKLGILYRK------RLI----------LDGY-E------------------------------- 219 (674)
T ss_pred ---------CCCCCCeEEEEEecC------eee----------eccc-c-------------------------------
Confidence 000111111 11000 000 0000 0
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--------------------
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-------------------- 1367 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-------------------- 1367 (1953)
. .+. .+..++.+....+.++||||..+..++.+...|...
T Consensus 220 ------------~-------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 279 (674)
T PRK01172 220 ------------R-------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDS 279 (674)
T ss_pred ------------c-------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHH
Confidence 0 000 012233333456788999999888877777766542
Q ss_pred -----CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC---------CCCchhHHh
Q 000169 1368 -----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQ 1433 (1953)
Q Consensus 1368 -----GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp---------pWNP~~d~Q 1433 (1953)
...+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++ .+||++|. ++++..+.|
T Consensus 280 L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Q 355 (674)
T PRK01172 280 LNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQ 355 (674)
T ss_pred HHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHH
Confidence 12356689999999999999999975544 7999999999999996 57777764 357788999
Q ss_pred hhhcccccCCcce
Q 000169 1434 AVARAHRIGQKRE 1446 (1953)
Q Consensus 1434 AiGRAhRIGQKKe 1446 (1953)
++|||+|.|....
T Consensus 356 m~GRAGR~g~d~~ 368 (674)
T PRK01172 356 MIGRAGRPGYDQY 368 (674)
T ss_pred HhhcCCCCCCCCc
Confidence 9999999997655
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=209.09 Aligned_cols=314 Identities=20% Similarity=0.211 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kwa--Psl 1076 (1953)
+..|.|..++..++. +.+||=|.-+|+|||......|..-+...+..--.||++|+.-+ .|-.+.|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 456889999999987 89999999999999999888777766555555567999999854 45444454432 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh------cccccCccEEEcccccccCCchh--HHHHHhhhc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS------KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY 1148 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s------~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L 1148 (1953)
++.++.|..+.-. .......+++|||+|++.+..... .+...+..++|+|||.++.+... .+.-....+
T Consensus 105 K~~vivGG~d~i~---qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 105 KVSVIVGGTDMIM---QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred eEEEEEccHHHhh---hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 8888888766543 234557789999999998865421 12223568999999999976432 122222234
Q ss_pred ccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1149 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1149 ~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.. .-+++|+|- .+++.+| |..|+.+....
T Consensus 182 P~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~~a~--------------------------- 212 (442)
T KOG0340|consen 182 PKPRQTLLFSATI-TDTIKQL---------------------FGCPITKSIAF--------------------------- 212 (442)
T ss_pred CCccceEEEEeeh-hhHHHHh---------------------hcCCcccccce---------------------------
Confidence 444 579999994 2222222 22222110000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.+ .+....| .-..+|.
T Consensus 213 ~~-----e~~~~vs-------------tvetL~q---------------------------------------------- 228 (442)
T KOG0340|consen 213 EL-----EVIDGVS-------------TVETLYQ---------------------------------------------- 228 (442)
T ss_pred EE-----eccCCCC-------------chhhhhh----------------------------------------------
Confidence 00 0000000 0001111
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
...++...+|-.+|..+|..... .+..++||++.+..+.+|.-.|+..++....+|+-+++.+|...
T Consensus 229 ------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 229 ------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred ------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 01112234555667777777655 56779999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+-+|+++... +|++|+++++|||+++++.||+||.|-+|..|++|.||..|.|......
T Consensus 297 LsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 297 LSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceE
Confidence 9999986655 7999999999999999999999999999999999999999999887753
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=209.53 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=185.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhH-----------h
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~deR-----------k 1089 (1953)
.++..+||+|||.+++.++...+. ....+++++|+|.. ++.++.+.+..++.. .+..+++..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999988877664 34567899999965 788899999998765 344444432210 0
Q ss_pred HHHHHHH----hhccccEEEEeHHHHHhhhhc--------ccccCccEEEcccccccCCchh-HHHHHhhhcc--cceeE
Q 000169 1090 RLFSQEV----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1154 (1953)
Q Consensus 1090 ~l~~qei----~~~~fdVVITTYEsL~kd~s~--------L~kikWd~VIIDEAHrLKN~~S-KlsraLk~L~--a~~RL 1154 (1953)
....... .....+|+|+|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000000 112467999999988654322 2223447999999999975322 2333333332 33579
Q ss_pred EecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKk 1234 (1953)
++|||+- ..+.. |...+......
T Consensus 160 ~~SATlp----~~l~~---------------~~~~~~~~~~~-------------------------------------- 182 (358)
T TIGR01587 160 LMSATLP----KFLKE---------------YAEKIGYVEFN-------------------------------------- 182 (358)
T ss_pred EEecCch----HHHHH---------------HHhcCCCcccc--------------------------------------
Confidence 9999962 11111 10000000000
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 000169 1235 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1314 (1953)
Q Consensus 1235 DVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~ 1314 (1953)
...+..... ....|++....
T Consensus 183 ---~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 183 ---EPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred ---cCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 000000000 00000000000
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHH----HHH
Q 000169 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRES----AIV 1388 (1953)
Q Consensus 1315 l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi--kylRLDGsTs~eeRqe----aIe 1388 (1953)
.....|...+..++..+ ..+.++||||+....++.+..+|...+. .+..+||.++..+|.+ +++
T Consensus 203 ---------~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 00012344555555433 4578999999999999999999988776 4889999999999976 488
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc----eEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK----eV~VyrL 1452 (1953)
.|.++... +|++|+++++|||+ .+++||+++.+ +..++|++||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~~---ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEKF---VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCCe---EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 99864433 79999999999999 48999998776 789999999999999764 3555544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=213.56 Aligned_cols=314 Identities=20% Similarity=0.268 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CC-CCeEEEechHH-HHHHHH---HHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---NY-GPHLIIVPNAV-LVNWKS---ELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---~~-GP~LIVVP~SL-L~QW~~---Ef~K 1071 (1953)
+|.+-|...+.-++. +...+.+.-||+|||+.++..+..++.... .. -.+|||||+.- ..|-.. ++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 678888888776665 668899999999999999887776654321 11 24799999984 445444 4556
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHHHhh
Q 000169 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (1953)
Q Consensus 1072 waPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsraLk 1146 (1953)
+.++..+.+..|+...+... +.+.. ..+++|.|++.|..+... +.-...+++|||||+|+.... --+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 66777777777766554332 12333 889999999999877433 222244789999999986422 22333334
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+... .-+++|||-
T Consensus 257 ~lpk~rqt~LFSAT~----------------------------------------------------------------- 271 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ----------------------------------------------------------------- 271 (543)
T ss_pred hccccceeeEeeCCC-----------------------------------------------------------------
Confidence 44322 245566652
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
++.-+.+.+-........++..+...
T Consensus 272 ---------------------------~~kV~~l~~~~L~~d~~~v~~~d~~~--------------------------- 297 (543)
T KOG0342|consen 272 ---------------------------PSKVKDLARGALKRDPVFVNVDDGGE--------------------------- 297 (543)
T ss_pred ---------------------------cHHHHHHHHHhhcCCceEeecCCCCC---------------------------
Confidence 11111111000000000000000000
Q ss_pred CCCCCCCCCccccchhh-hhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~-Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
.+..+.+...+ +.....+|-+|..+|.+.... .||+|||....+..++.+.|....+++..|||..++..|.
T Consensus 298 ------~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 298 ------RETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ------cchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 00000001111 122234567777777775433 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+|...++. ||++|+++++|+|++++|.||-||+|-+|..|+||+||+.|-|-+.+...
T Consensus 371 ~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL 432 (543)
T KOG0342|consen 371 STFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALL 432 (543)
T ss_pred hHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEE
Confidence 999999987776 89999999999999999999999999999999999999999887766533
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=210.13 Aligned_cols=309 Identities=18% Similarity=0.247 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---CCeEEEechHHHH-H---HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY---GPHLIIVPNAVLV-N---WKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~---GP~LIVVP~SLL~-Q---W~~Ef~Kw 1072 (1953)
...|.|...|.-.+- +...+-|..||+|||..++..|+..+-+++.. -++||+||+.-|. | ....+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 456778887765543 44556778899999999888777655445433 3689999998443 3 44556666
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHHHhhh
Q 000169 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (1953)
Q Consensus 1073 aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsraLk~ 1147 (1953)
+ ++.|....|+-+.+.+- ......+||||.|++.|+.+... |.-....++|+|||+||.... ..+...+..
T Consensus 279 t-~I~~~L~vGGL~lk~QE---~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE---AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred c-cceeeeeecCccHHHHH---HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 5 48888888887776432 34567899999999999987544 333356789999999996432 233333332
Q ss_pred cc-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YR-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
.. .+.-+|+|||- ...+.||.++ - +++|+..
T Consensus 355 cpk~RQTmLFSATM-teeVkdL~sl---S--------------L~kPvri------------------------------ 386 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM-TEEVKDLASL---S--------------LNKPVRI------------------------------ 386 (691)
T ss_pred ccccccceeehhhh-HHHHHHHHHh---h--------------cCCCeEE------------------------------
Confidence 22 23358888884 2223333221 0 1111111
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
++..+.. ....|..-..++|-
T Consensus 387 ----------------------fvd~~~~----------------------------------~a~~LtQEFiRIR~--- 407 (691)
T KOG0338|consen 387 ----------------------FVDPNKD----------------------------------TAPKLTQEFIRIRP--- 407 (691)
T ss_pred ----------------------EeCCccc----------------------------------cchhhhHHHheecc---
Confidence 0000000 00000000000000
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
. +..-+-.+|..++.++. ..+++||++....+..|.-.|-..|+++.-|||+.++.+|.+.
T Consensus 408 -------~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 408 -------K----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred -------c----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 0 00001123333444433 5689999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
++.|+....+ +||+|+++++|||+..+-+||+|+.|-+...|+||+||+.|.|...
T Consensus 469 L~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 469 LEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred HHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999987777 8999999999999999999999999999999999999999999653
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=223.07 Aligned_cols=314 Identities=16% Similarity=0.112 Sum_probs=191.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
+|+|+|.+++.- .+..+.+.|++.+||+|||+.+...|...+. ...+++|+|||.. |+.++..+|.+|.. +++
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~--~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLL--REGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHH--hcCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 2234789999999999999999554443322 1346899999976 77888888888753 577
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~~ 1152 (1953)
+..+.|..+.... ....++|+|+|++.+...... ..--++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~q 171 (720)
T PRK00254 98 VAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ 171 (720)
T ss_pred EEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCc
Confidence 8888876543221 124679999999987533210 0112578999999999964 2334444444443 356
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++||||.- +..++- +|+........ .+|
T Consensus 172 iI~lSATl~--n~~~la------------------~wl~~~~~~~~-------------------------~rp------ 200 (720)
T PRK00254 172 ILGLSATVG--NAEELA------------------EWLNAELVVSD-------------------------WRP------ 200 (720)
T ss_pred EEEEEccCC--CHHHHH------------------HHhCCccccCC-------------------------CCC------
Confidence 899999972 234443 33321110000 000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
.|- ...+... ......... .. . +
T Consensus 201 -------v~l--~~~~~~~---------------~~~~~~~~~-~~---~---~-------------------------- 223 (720)
T PRK00254 201 -------VKL--RKGVFYQ---------------GFLFWEDGK-IE---R---F-------------------------- 223 (720)
T ss_pred -------Ccc--eeeEecC---------------CeeeccCcc-hh---c---c--------------------------
Confidence 000 0000000 000000000 00 0 0
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH--------------------------
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-------------------------- 1366 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~-------------------------- 1366 (1953)
...+..++.++...+.++||||..+..++.+...|..
T Consensus 224 -----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 224 -----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred -----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0001112222333577899999887766554433321
Q ss_pred -------cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-------cCCCC-CchhH
Q 000169 1367 -------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNE 1431 (1953)
Q Consensus 1367 -------rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi-------fDppW-NP~~d 1431 (1953)
....+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++.++||. ++.++ ....+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123477899999999999999999976544 7999999999999999888874 33333 34578
Q ss_pred HhhhhcccccCCcceEEEEEE
Q 000169 1432 EQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.|++|||+|.|..+.-.++.+
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHhhhccCCCCcCCCceEEEE
Confidence 999999999876544334433
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=212.89 Aligned_cols=414 Identities=15% Similarity=0.189 Sum_probs=238.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||...+..++- +.|+|+...||.|||++++..+ ++.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa-~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPL-YLNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHH-HHHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 478887777765553 3457999999999999987664 332222 23589999987 66777777655542 45
Q ss_pred eEEEEecc-hhh-H-hHHHHHHHhhccccEEEEeHHHHHhh--hh-------cccccCccEEEcccccccCCchhHHHHH
Q 000169 1077 SCIYYVGA-KDQ-R-SRLFSQEVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1077 kVvvy~Gs-~de-R-k~l~~qei~~~~fdVVITTYEsL~kd--~s-------~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
.+.+..+. ... . ... ......++|+++|++.|..+ +. .+....+.++||||||.|.-.
T Consensus 141 sv~~~~~~s~~~~~~~~~---rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD------- 210 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANE---KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD------- 210 (762)
T ss_pred cEEEEECCCCccccCHHH---HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc-------
Confidence 55544332 111 1 111 11124689999999988432 11 122236789999999998421
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCC------------------hHHHHhhhcCCcccCCCCCCCChh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN------------------RKAFHDWFSQPFQKEGPTHNADDD 1206 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S------------------~k~F~e~F~kPf~k~g~~~~~e~d 1206 (1953)
. +..-|++||.|-.. ..+|..++-+...+-.. .....+.|..+ +
T Consensus 211 --e--artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~---------- 272 (762)
T TIGR03714 211 --S--AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N---------- 272 (762)
T ss_pred --c--CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c----------
Confidence 1 33458899977533 34666654332221110 00111111110 0
Q ss_pred hHHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH-
Q 000169 1207 WLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1207 ~l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
+.........+.+...|+. +++.|-+.-+-. +....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 273 -l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~ 347 (762)
T TIGR03714 273 -LYSEEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAM 347 (762)
T ss_pred -cCChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceee
Confidence 0000111123334444443 333333222211 11122221 112 244445555544333322221100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+................-..|.++.+-+.+..|.... ...........|+..+...+..+...+..|
T Consensus 348 a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 348 ASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred eeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCE
Confidence 0000000000000001111234566666655544443221 111223344578888888888888889999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc---------cCCe
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADT 1418 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ---------aADt 1418 (1953)
||||..+...+.|...|...|+++..|+|.+...+|..+...|+.+ . ++++|+.+|+|+|+. ..++
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~---VlIATdmAgRGtDI~l~~~v~~~GGL~v 502 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--A---VTVATSMAGRGTDIKLGKGVAELGGLAV 502 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--e---EEEEccccccccCCCCCccccccCCeEE
Confidence 9999999999999999999999999999999988887776666542 2 799999999999999 8899
Q ss_pred EEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1419 VIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
||.||++-+... .|+.||++|.|.+..+..| ++.++.+..
T Consensus 503 Iit~~~ps~rid-~qr~GRtGRqG~~G~s~~~--is~eD~l~~ 542 (762)
T TIGR03714 503 IGTERMENSRVD-LQLRGRSGRQGDPGSSQFF--VSLEDDLIK 542 (762)
T ss_pred EEecCCCCcHHH-HHhhhcccCCCCceeEEEE--Eccchhhhh
Confidence 999999977655 9999999999988876544 344555543
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=206.43 Aligned_cols=352 Identities=20% Similarity=0.281 Sum_probs=201.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCC-eEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGP-HLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP-~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.-.|..+|--++. +...++-..||+|||+..+..|...+... ...|+ .|||||+. |+.|-.+-+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 345567888877776 77889999999999999998887766432 22344 59999988 666767777777
Q ss_pred CCCCeEEE---EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1073 LPSVSCIY---YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1073 aPslkVvv---y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
.....++| ..|+.....+ ..-...+.+|+|.|++++..+... +.--...+||+|||+++..-+.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSE---KARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGf------- 304 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSE---KARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGF------- 304 (708)
T ss_pred hcCceEEeeceeecccccccH---HHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccc-------
Confidence 65544443 2333221111 112245789999999999987543 2223456799999999853110
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
-.++--+++.+.... + .+.+...+..++..+|-.
T Consensus 305 ------------------ekdit~Il~~v~~~~----------------~------------~e~~~~~lp~q~q~mLlS 338 (708)
T KOG0348|consen 305 ------------------EKDITQILKAVHSIQ----------------N------------AECKDPKLPHQLQNMLLS 338 (708)
T ss_pred ------------------hhhHHHHHHHHhhcc----------------c------------hhcccccccHHHHhHhhh
Confidence 011222222221100 0 000000011122222211
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
-.|.-....+. ++.-+....|..+-+..|. +.....+...|.
T Consensus 339 ATLtd~V~rLa-~~sLkDpv~I~ld~s~~~~-------------------------------------~p~~~a~~ev~~ 380 (708)
T KOG0348|consen 339 ATLTDGVNRLA-DLSLKDPVYISLDKSHSQL-------------------------------------NPKDKAVQEVDD 380 (708)
T ss_pred hhhHHHHHHHh-hccccCceeeeccchhhhc-------------------------------------CcchhhhhhcCC
Confidence 11111111110 0111111111111111000 000111122222
Q ss_pred CCCCCCC----Cccccchhh-hhhcccHHHHHHHHHHHH--HhcCCeeEEeechhHHHHHHHHHHH----H---------
Q 000169 1307 HPLLNYP----YFSDLSKDF-LVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQ----W--------- 1366 (1953)
Q Consensus 1307 HP~L~~p----~l~dls~d~-Li~~SGKLelLdrIL~kL--katGhKVLIFSQft~~LDILed~L~----~--------- 1366 (1953)
-|+-..- ..+.+...+ ++..--++.+|..+|... .....|+|||....++.+.=.+.|. .
T Consensus 381 ~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~ 460 (708)
T KOG0348|consen 381 GPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAP 460 (708)
T ss_pred cccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCc
Confidence 2221100 000000000 122222444555555544 2334588999988887766555443 2
Q ss_pred ---------cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhc
Q 000169 1367 ---------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1437 (1953)
Q Consensus 1367 ---------rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGR 1437 (1953)
.+.++.+|||+|.+++|..++..|.... ..+|+||+++++||||+.++.||-||+|..+..|++|+||
T Consensus 461 ~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGR 537 (708)
T KOG0348|consen 461 DSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGR 537 (708)
T ss_pred ccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhh
Confidence 1457999999999999999999998633 3489999999999999999999999999999999999999
Q ss_pred ccccCCcceEEEEEE
Q 000169 1438 AHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1438 AhRIGQKKeV~VyrL 1452 (1953)
+.|+|-+.+...|.+
T Consensus 538 TARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 538 TARAGEKGEALLFLL 552 (708)
T ss_pred hhhccCCCceEEEec
Confidence 999999998877655
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=214.79 Aligned_cols=313 Identities=21% Similarity=0.295 Sum_probs=209.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
...|+|+.++.-+.. +++.+.|..||+|||...+..| .++++... .....||++|++ |+.|-.+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 678999999876654 8888999999999999987754 45554322 235679999987 88899999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc---hhHH
Q 000169 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR---ESVL 1141 (1953)
Q Consensus 1069 f~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~---~SKl 1141 (1953)
..++.. .+++++.+|..+.+... ......+||+|+|.+.+..- ...+..-...|+|||||.+|... .-.+
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 999874 45665555555554433 23467899999999998754 23333345569999999998641 1111
Q ss_pred HHHhhhc-----ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000169 1142 ARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (1953)
Q Consensus 1142 sraLk~L-----~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~li 1216 (1953)
.+.+... ....-+++|||= . .
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtf------------------------------p----~-------------------- 274 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATF------------------------------P----K-------------------- 274 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccC------------------------------C----h--------------------
Confidence 1111111 111223333331 0 0
Q ss_pred HHHHHHHhhHHHHHH----HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHH
Q 000169 1217 IHRLHQILEPFMLRR----RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292 (1953)
Q Consensus 1217 I~RLhklLrPFmLRR----lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~ 1292 (1953)
.+..+...|+.-- ....|..........+++|.
T Consensus 275 --~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------------- 311 (482)
T KOG0335|consen 275 --EIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------------- 311 (482)
T ss_pred --hhhhhHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------------
Confidence 0111111111100 00000000111111222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH-------hcCCeeEEeechhHHHHHHHHHHH
Q 000169 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-------RTGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1293 sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk-------atGhKVLIFSQft~~LDILed~L~ 1365 (1953)
...|...|..+|.... ...++++||+.....++.|+.+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 1122222333333221 112589999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
..++++.-|||.-+..+|.+.|+.|+.+... +|++|.++.+|||++.+++||+||.|-+-..|++||||++|.|+..
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999987666 7999999999999999999999999999999999999999999998
Q ss_pred eEEEEEE
Q 000169 1446 EVKVIYM 1452 (1953)
Q Consensus 1446 eV~VyrL 1452 (1953)
-++.|.-
T Consensus 436 ~atsf~n 442 (482)
T KOG0335|consen 436 RATSFFN 442 (482)
T ss_pred eeEEEec
Confidence 8877753
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=200.15 Aligned_cols=306 Identities=19% Similarity=0.229 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--CCeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--SVSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaP--slkVv 1079 (1953)
..|..++-.++. +.+.|.-...|+|||.+...-++.......+.-.+||+.|+.- ..|-..-+..... ++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 357788877776 8888999999999997753222222222223346899999984 4555555555543 46777
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cceeE
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQRRL 1154 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~~RL 1154 (1953)
...|+...-..+.. .....+||..|++++.+- +..|.-...+++|+|||+.|.|. ..+++..++.++ ....+
T Consensus 128 acigg~n~gedikk---ld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv 204 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKK---LDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVV 204 (400)
T ss_pred EEecCCccchhhhh---hcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEE
Confidence 77776654333221 124568999999988654 45566678899999999999764 456777777776 45688
Q ss_pred EecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKk 1234 (1953)
++|||- ..|+..+.++.
T Consensus 205 ~~SATl----p~eilemt~kf----------------------------------------------------------- 221 (400)
T KOG0328|consen 205 LVSATL----PHEILEMTEKF----------------------------------------------------------- 221 (400)
T ss_pred EEeccC----cHHHHHHHHHh-----------------------------------------------------------
Confidence 899984 22333222222
Q ss_pred hhhcCCCCceEEEEEe-ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1235 DVEGSLPPKVSIVLRC-RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1235 DVekdLPpKvE~vV~c-~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
.|+.+...++- .++.+-.+.|- +.++.
T Consensus 222 -----mtdpvrilvkrdeltlEgIKqf~-------v~ve~---------------------------------------- 249 (400)
T KOG0328|consen 222 -----MTDPVRILVKRDELTLEGIKQFF-------VAVEK---------------------------------------- 249 (400)
T ss_pred -----cCCceeEEEecCCCchhhhhhhe-------eeech----------------------------------------
Confidence 12222222111 11111000000 00000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
..=|+..|..+...| +=...+|||+.....|+|.+.++..++.+..+||.++.++|.+++++|+++
T Consensus 250 ------------EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 250 ------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred ------------hhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 001334444443333 234689999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+. +|++|++-++|+|+|.++.||+||+|-|+..|++||||.+|.|.+.-+
T Consensus 316 ~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 316 KSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred Cce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 887 899999999999999999999999999999999999999999987654
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=219.91 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.4
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH-----HHHHHhhc----CC----CCccEEEEeccccc
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq-----eaIerFNs----~d----s~ifVfLLSTrAGG 1408 (1953)
..+.++||||+.+..++.|.+.|...++ ..|||.++..+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4568899999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred cccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
+|||+.. ++||+++.|+ ..|+||+||++|.|....+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999986 9999988775 7999999999999986544
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=213.36 Aligned_cols=356 Identities=17% Similarity=0.214 Sum_probs=227.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~KwaP 1074 (1953)
....+|+||..+++.+++.+.++. ..+|++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCC
Confidence 345799999999999999877554 4789999999999999999999986 667789999997 5688998889999999
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-------hcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-------s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
....+....... ....+.|+|+||.++.... ..+..-.||+||||||||- ....++.+..
T Consensus 241 ~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~d 307 (875)
T COG4096 241 FGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILD 307 (875)
T ss_pred Cccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHHH
Confidence 876655433221 1226799999999997642 2344557999999999993 3445556666
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|-...+++|||||-..--.+-+.+|+ +.|...+. |...+
T Consensus 308 YFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV--- 346 (875)
T COG4096 308 YFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAV--- 346 (875)
T ss_pred HHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHh---
Confidence 66677888899996532111111111 33332221 00000
Q ss_pred HHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1228 MLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
+..++ .|.+. ...+.+.... +..+...+.....+. ..+
T Consensus 347 -----~DGfL--vpy~vi~i~~~~~~~G--------------~~~~~~serek~~g~--------------------~i~ 385 (875)
T COG4096 347 -----EDGFL--VPYKVIRIDTDFDLDG--------------WKPDAGSEREKLQGE--------------------AID 385 (875)
T ss_pred -----hcccc--CCCCceEEeeeccccC--------------cCcCccchhhhhhcc--------------------ccC
Confidence 01111 22222 1122221110 000000000000000 000
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc---C---CeeEEeechhHHHHHHHHHHHHc-----CCeEEeec
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR-----QLVYRRID 1375 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat---G---hKVLIFSQft~~LDILed~L~~r-----GikylRLD 1375 (1953)
.+ ...++....+..+..-...+.+++.|...... | .|.||||....+++.|...|... |--++.|+
T Consensus 386 ~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 386 ED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred cc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00001111111112223344555555554433 3 48999999999999999999765 22356788
Q ss_pred CCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc-------CCcce-E
Q 000169 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-------GQKRE-V 1447 (1953)
Q Consensus 1376 GsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI-------GQKKe-V 1447 (1953)
|... +=+..|+.|-. +..+..|.+|.+.+.+|+|.+.|-.+||+-.-.+-..+.|.+||+-|+ ||.|+ .
T Consensus 463 ~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F 539 (875)
T COG4096 463 GDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFF 539 (875)
T ss_pred ccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeE
Confidence 8874 44567888876 567777899999999999999999999999999999999999999997 34444 5
Q ss_pred EEEEEeh
Q 000169 1448 KVIYMEA 1454 (1953)
Q Consensus 1448 ~VyrLvT 1454 (1953)
.|+.++-
T Consensus 540 ~ifDf~~ 546 (875)
T COG4096 540 TIFDFVD 546 (875)
T ss_pred EEEEhhh
Confidence 7777754
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=200.85 Aligned_cols=413 Identities=17% Similarity=0.189 Sum_probs=227.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kwa 1073 (1953)
|...+|-|+.|+--++. |.|.-..||.|||++++..+..... ....++||+|+..|. + |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44566778888876664 3388899999999998766554332 234789999998554 3 556665554
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHH-----Hhhhh-----------------------cccccCccE
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS-----------------------KLSKVDWKY 1125 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL-----~kd~s-----------------------~L~kikWd~ 1125 (1953)
++++.++.|...... .......+|+++|-..| +.... .+....+.+
T Consensus 172 -Glsv~~i~gg~~~~~-----r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE-----RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred -CCEEEEEeCCCCHHH-----HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 467766666533211 11134569999996544 22211 111236889
Q ss_pred EEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHH----hhhcccc-cC----------C--h-HHHH
Q 000169 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL----NLLLPEV-FD----------N--R-KAFH 1187 (1953)
Q Consensus 1126 VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLL----nFLlP~i-F~----------S--~-k~F~ 1187 (1953)
+||||++-+. +.. +..-|++||.+-.....++|... .-|..+. |. + . ....
T Consensus 246 aIvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e 314 (656)
T PRK12898 246 AIVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIA 314 (656)
T ss_pred eEeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHH
Confidence 9999999874 122 33458888855333223444333 3232221 10 0 0 0000
Q ss_pred hhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHH
Q 000169 1188 DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAI 1259 (1953)
Q Consensus 1188 e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~L 1259 (1953)
+.|.. +. ..|... ....+.+...|+- +++.+-+.-+ +.+....+| ...| .+..-+
T Consensus 315 ~~~~~-l~---------~~~~~~---~~~~~~i~~Al~A~~l~~~d~dYi---V~d~~V~iv-D~~TGR~~~gr~w~~GL 377 (656)
T PRK12898 315 ELAES-LP---------PAWRGA---VRREELVRQALSALHLFRRDEHYI---VRDGKVVIV-DEFTGRVMPDRSWEDGL 377 (656)
T ss_pred HHhCc-ch---------hhcccc---hHHHHHHHHHHHHHHHHhcCCceE---EECCeEEEE-ECCCCeECCCCCcChHH
Confidence 11100 00 000000 0011222223322 2222222211 112222222 2222 244445
Q ss_pred HHHHHHccCcccCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccc----chh-hhhhccc
Q 000169 1260 YDWIKATGTLRVDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKD-FLVKSCG 1328 (1953)
Q Consensus 1260 Yk~I~~~~~l~ld~~~ek~------~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dl----s~d-~Li~~SG 1328 (1953)
.+.+...-.+.+....... ..+............+......|.++.+-..+..|..... ... .......
T Consensus 378 hQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~ 457 (656)
T PRK12898 378 HQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAA 457 (656)
T ss_pred HHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHH
Confidence 5555443322222211100 0000000000001111122344555544333322221110 011 1233456
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
|...|..++..+...+..|||||......+.|...|...|+++..|+|... +|+..+..|....+. ++|+|+++|
T Consensus 458 K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAg 532 (656)
T PRK12898 458 KWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchh
Confidence 888888888887777889999999999999999999999999999999864 556666666543444 899999999
Q ss_pred cccCCc---cCC-----eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhh
Q 000169 1409 RGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1409 eGLNLQ---aAD-----tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (1953)
+|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.++
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 999998 444 999999999999999999999999988776544 34444443
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=210.95 Aligned_cols=374 Identities=15% Similarity=0.127 Sum_probs=206.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.-.|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++. .....++|||||.. |..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999887643 457999999999999999998888774 34456899999965 89999999999
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-hccccc----CccEEEcccccccCCchhHHHHHhh
Q 000169 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-SKLSKV----DWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1072 waPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-s~L~ki----kWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
+.+... .-.++... + ..........|+|||++.+.+.. ..+... ...+||+|||||.. ...+...+.
T Consensus 316 ~~~~~~--~~~~s~~~---L-~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~--~~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAE---L-KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ--YGELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHH---H-HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc--chHHHHHHH
Confidence 875311 11122111 1 11223345789999999997521 111111 22389999999964 234445554
Q ss_pred -hcccceeEEecccCCCCCHHHHHHHHhhhcccc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1147 -RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1147 -~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~i---F~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.++..++|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+........ ..+.. ..+.
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~---~~~~~-------~~l~- 456 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPE---DHLDR-------KKLD- 456 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchh---hccCh-------HHHH-
Confidence 567789999999998642111111111100000 01111122222222221110000 00000 0000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
..+..........+... ....+......+.
T Consensus 457 -----------------------------------~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~ 486 (667)
T TIGR00348 457 -----------------------------------AFFDEIFELLPERIREI---------------TKESLKEKLQKTK 486 (667)
T ss_pred -----------------------------------HHHHHHHHhhhccccHH---------------HHHHHHHHHHHHH
Confidence 00000000000000000 0000111111111
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-----CCeEEeecCC
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGT 1377 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-----GikylRLDGs 1377 (1953)
.+..+|. .+....+ .++..........+.|.+|||..+..+..+.+.|... +...+.++|+
T Consensus 487 ~~~~~~~-------------~~~~ia~-~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~ 552 (667)
T TIGR00348 487 KILFNED-------------RLESIAK-DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGK 552 (667)
T ss_pred hhhcChH-------------HHHHHHH-HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCC
Confidence 1111110 0000000 0111111111223578999999999888887777543 3455667776
Q ss_pred CCHH---------------------HHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhh
Q 000169 1378 TSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436 (1953)
Q Consensus 1378 Ts~e---------------------eRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiG 1436 (1953)
...+ ....++++|..+ .++. |||.++...+|+|.+.++++++.-|--+ +.++|++|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~ 629 (667)
T TIGR00348 553 ESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIA 629 (667)
T ss_pred ccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHH
Confidence 5433 224789999863 3344 5677799999999999999999988776 45899999
Q ss_pred ccccc-CC-cceEEEEEEehhhhhh
Q 000169 1437 RAHRI-GQ-KREVKVIYMEAVVDKI 1459 (1953)
Q Consensus 1437 RAhRI-GQ-KKeV~VyrLvTVEEkI 1459 (1953)
|+.|+ +- |....|+.++.+.+.+
T Consensus 630 R~nR~~~~~K~~g~IvDy~g~~~~l 654 (667)
T TIGR00348 630 RTNRIDGKDKTFGLIVDYRGLEKSL 654 (667)
T ss_pred HhccccCCCCCCEEEEECcChHHHH
Confidence 99995 43 4456888887654433
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=205.40 Aligned_cols=411 Identities=14% Similarity=0.173 Sum_probs=229.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHCCCC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWLPSV 1076 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~KwaPsl 1076 (1953)
++||+...+..++- ..|.|....||.|||++++..+..... ....++||+|+..|. + |...+.+|+ ++
T Consensus 77 ~~p~~vQl~~~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 77 MRPYDVQLIGALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CCCchHHHHhHHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 45554444444443 234489999999999988665542221 234789999998554 3 666666665 57
Q ss_pred eEEEEecchh-hHhHHHHHHHhhccccEEEEeHHHH-----Hhhhh----cccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1077 SCIYYVGAKD-QRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1077 kVvvy~Gs~d-eRk~l~~qei~~~~fdVVITTYEsL-----~kd~s----~L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
.+.++.|... ...+ ......+|+++|...+ +.... .+....+.++||||+|.|.= .
T Consensus 149 ~v~~i~g~~~~~~~r-----~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi---------D 214 (790)
T PRK09200 149 TVGLNFSDIDDASEK-----KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL---------D 214 (790)
T ss_pred eEEEEeCCCCcHHHH-----HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee---------c
Confidence 7777766543 2111 1123579999997666 32211 12234689999999999841 1
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhh----hcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~---k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
. +..-|++||.+-.. ..+|...+. |.++. |. +. ....+.|..+ ..|.
T Consensus 215 e--a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-----------~l~~ 279 (790)
T PRK09200 215 E--AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-----------NLYS 279 (790)
T ss_pred c--CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-----------cccC
Confidence 1 22247787754322 235544432 22210 10 00 0011111110 0000
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHHhhhh
Q 000169 1209 ETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c------~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~ 1281 (1953)
......++.+...|+. +++.+-+.-+. .+....+|.- +-+.+..-+.+.+...-.+.+..........
T Consensus 280 --~~~~~~~~~i~~Al~A~~~~~~d~dYiV---~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~I 354 (790)
T PRK09200 280 --LEHQVLYRHIILALRAHVLFKRDVDYIV---YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASI 354 (790)
T ss_pred --hhhhHHHHHHHHHHHHHHHhhcCCcEEE---ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhh
Confidence 0001112233333332 33333222111 1111111110 1112344444555443322222211100000
Q ss_pred cChhhHHHHHHHH-------HHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEE
Q 000169 1282 KNPIYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1349 (1953)
Q Consensus 1282 kn~~~~ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1349 (1953)
....+ -+.|..| ...-..|.++-+-+.+..|.... ...........|+..|...+......+..|||
T Consensus 355 t~q~~-fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLI 433 (790)
T PRK09200 355 TIQNL-FRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLI 433 (790)
T ss_pred hHHHH-HHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00000 0011111 11123456665555544333221 11122234457888888888877778999999
Q ss_pred eechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCC---ccCC-----eEEE
Q 000169 1350 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----TVII 1421 (1953)
Q Consensus 1350 FSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL---QaAD-----tVIi 1421 (1953)
||......+.|...|...|+++..|+|.+...++..+...|.. +. ++++|+.+|+|+|+ +.+. +||+
T Consensus 434 f~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 434 GTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcEEEe
Confidence 9999999999999999999999999999988887777777653 23 79999999999999 5777 9999
Q ss_pred cCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1422 fDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
||.|-|+..|.|+.||++|.|....+..| ++.++.+..
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999998776543 455555554
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=206.63 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=225.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|+-|.++|..+++ +.+.|...+||.||++..-... ++ ..|.+|||.|. +|+.+..+.+.... +.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 688999999999887 7889999999999997653322 22 25799999996 58888888888753 555
Q ss_pred EEEec--chhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc-------hhHHHHHhhh
Q 000169 1079 IYYVG--AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR-------ESVLARDLDR 1147 (1953)
Q Consensus 1079 vvy~G--s~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~-------~SKlsraLk~ 1147 (1953)
....+ +.+++..+.. ....+..+++..+++.+... ...|...+..+++|||||.+-.. ...+......
T Consensus 85 ~~lnS~l~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 85 AYLNSTLSREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred ehhhcccCHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 55544 3455555443 45567899999999999865 45677889999999999988542 3344555556
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|...-+++||||--.--..|+...|..-.+.+|- ..|..|--
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------~sfdRpNi-------------------------------- 205 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFR------GSFDRPNL-------------------------------- 205 (590)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------ecCCCchh--------------------------------
Confidence 6666799999997666666666666654443321 11111100
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....
T Consensus 206 -------------------------------~~~v~~~------------------------------------------ 212 (590)
T COG0514 206 -------------------------------ALKVVEK------------------------------------------ 212 (590)
T ss_pred -------------------------------hhhhhhc------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
..++..++ -|.......+...||||..+...+.+..+|...|+....+||++..++|..+-
T Consensus 213 ------------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 213 ------------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ------------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHH
Confidence 00000111 01111123445589999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++|..++.. ++++|.|.|.|||-+++.+|||||+|-+...|.|-+|||+|-|...++.+++-
T Consensus 274 ~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 274 QAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 999986666 89999999999999999999999999999999999999999999988877663
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=217.43 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=188.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
|.+++++|..++..++. +.+.++..+||+|||..++.++.++. .....+|||||+. |+.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45899999998877764 77889999999999964443333332 2346799999987 788999999998754
Q ss_pred -CeEEEEecch----hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH----------
Q 000169 1076 -VSCIYYVGAK----DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV---------- 1140 (1953)
Q Consensus 1076 -lkVvvy~Gs~----deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK---------- 1140 (1953)
+.+.+..|.. ..+.... ..+..+.++|+|+|++++.++...+...++++|||||||++....-.
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~-~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFL-ERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHH-HHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3443333322 2222221 12345679999999999998877777677999999999998532111
Q ss_pred ----HHHHhhhcc-------------------------cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc
Q 000169 1141 ----LARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1191 (1953)
Q Consensus 1141 ----lsraLk~L~-------------------------a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~ 1191 (1953)
+..++..++ ....+++|||........
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~------------------------ 285 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV------------------------ 285 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH------------------------
Confidence 111111111 112333344432110000
Q ss_pred CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCccc
Q 000169 1192 QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271 (1953)
Q Consensus 1192 kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~l 1271 (1953)
.+++ ++.. +.+
T Consensus 286 -----------------------------------~l~~----~ll~---------~~v--------------------- 296 (1176)
T PRK09401 286 -----------------------------------KLFR----ELLG---------FEV--------------------- 296 (1176)
T ss_pred -----------------------------------HHhh----ccce---------EEe---------------------
Confidence 0000 0000 000
Q ss_pred CchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEee
Q 000169 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFS 1351 (1953)
Q Consensus 1272 d~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFS 1351 (1953)
... . ..++.+. | ..+....|...|..++..+ +..+||||
T Consensus 297 ~~~--------~---------------~~~rnI~-~--------------~yi~~~~k~~~L~~ll~~l---~~~~LIFv 335 (1176)
T PRK09401 297 GSP--------V---------------FYLRNIV-D--------------SYIVDEDSVEKLVELVKRL---GDGGLIFV 335 (1176)
T ss_pred cCc--------c---------------cccCCce-E--------------EEEEcccHHHHHHHHHHhc---CCCEEEEE
Confidence 000 0 0000000 0 0000013555666666543 56899999
Q ss_pred chhHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcC
Q 000169 1352 TMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYD 1423 (1953)
Q Consensus 1352 Qft~~---LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifD 1423 (1953)
+.... ++.|.++|...|+++..+||++ .+.+++|.+++.+ | |++ |+++++|||++. +.+|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~--V-LVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD--V-LVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC--E-EEEecCCCCceeecCCCCcceeEEEEeC
Confidence 98766 9999999999999999999999 2346999976554 4 555 799999999999 89999999
Q ss_pred CCC------CchhHHhhhhcccccC
Q 000169 1424 PDP------NPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1424 ppW------NP~~d~QAiGRAhRIG 1442 (1953)
.|- ....+.++++|+..+-
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHhhc
Confidence 998 7778899999997554
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=217.40 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=85.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC---------------------------------CeEEeecCCCCHHHHHHHHHH
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG---------------------------------ikylRLDGsTs~eeRqeaIer 1389 (1953)
.+.++||||+.+..++.|...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124567899999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
|+++... +|++|.++.+|||+..+|+||+|++|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9976554 799999999999999999999999999999999999999985
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=199.56 Aligned_cols=310 Identities=25% Similarity=0.337 Sum_probs=207.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHH------hCCCCCe-EEEechHHHHHHHHHH-H
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEF------KGNYGPH-LIIVPNAVLVNWKSEL-H 1070 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~------kg~~GP~-LIVVP~SLL~QW~~Ef-~ 1070 (1953)
...|.|..|+.-+++ ++.-|=-.-+|+|||+++...+ ...++. ....||+ |||||..-+.....++ .
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 345678888876665 5544444459999998865533 322222 2344665 9999998555444333 2
Q ss_pred HH--------CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCch--
Q 000169 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE-- 1138 (1953)
Q Consensus 1071 Kw--------aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~-- 1138 (1953)
.+ +|.++.....|+-..+..+ .......++||.|++.++.- +..+.-.-..|+.+|||+||-...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 22 3778888888887777654 45567889999999999754 233333456799999999996532
Q ss_pred hHHHHHhhhcccce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHh-hhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000169 1139 SVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHD-WFSQPFQKEGPTHNADDDWLETEKKVII 1216 (1953)
Q Consensus 1139 SKlsraLk~L~a~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e-~F~kPf~k~g~~~~~e~d~l~eEek~li 1216 (1953)
.-+...+..|++.+ -|++|||--. .+ ..|.. -+.+|+
T Consensus 345 ddir~iF~~FK~QRQTLLFSATMP~----KI---------------Q~FAkSALVKPv---------------------- 383 (610)
T KOG0341|consen 345 DDIRTIFSFFKGQRQTLLFSATMPK----KI---------------QNFAKSALVKPV---------------------- 383 (610)
T ss_pred hhHHHHHHHHhhhhheeeeeccccH----HH---------------HHHHHhhcccce----------------------
Confidence 23333444555544 5777777300 00 00000 000111
Q ss_pred HHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000169 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1296 (1953)
Q Consensus 1217 I~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~n 1296 (1953)
+|.+- . . + ..-++
T Consensus 384 ------------------------------tvNVG----------------R---------A-----------G-AAsld 396 (610)
T KOG0341|consen 384 ------------------------------TVNVG----------------R---------A-----------G-AASLD 396 (610)
T ss_pred ------------------------------EEecc----------------c---------c-----------c-ccchh
Confidence 00000 0 0 0 00000
Q ss_pred HHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecC
Q 000169 1297 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376 (1953)
Q Consensus 1297 ilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDG 1376 (1953)
.+..+ ..+..-.|+.. +|.-|..+.-.|||||.-..-.|.|.+||-..|+..+.|||
T Consensus 397 ViQev--------------------EyVkqEaKiVy---lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHG 453 (610)
T KOG0341|consen 397 VIQEV--------------------EYVKQEAKIVY---LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHG 453 (610)
T ss_pred HHHHH--------------------HHHHhhhhhhh---HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeec
Confidence 11111 01122234333 34445568889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1377 sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+-.+++|...|+.|+.+..+ +|++|++++-|||+++..+||+||.|-.-.+|++||||++|-|.+.-.+.|
T Consensus 454 GKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 454 GKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred CcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 99999999999999987777 899999999999999999999999999999999999999999988765544
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=206.99 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=122.8
Q ss_pred HHHHHHhcCCCCCCCCCccccc----hhhh-hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEE
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls----~d~L-i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikyl 1372 (1953)
...|+++-+-+.+..|...... .+.+ .....|+..+...+.++...|..|||||......+.|...|...|+++.
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 3467777666655444322111 1112 2234678778777777788999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-------CCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1373 RLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa-------ADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
.|+|. ..+|+..|..|....+. ++|+|+.+|+|+|+.. ..+||+++.|-|...|.|+.||++|.|...
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~---VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGA---VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCce---EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 99998 67999999999865544 8999999999999988 669999999999999999999999999998
Q ss_pred eEEEEEEehhhhhhh
Q 000169 1446 EVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~ 1460 (1953)
.+..|. +.++.++
T Consensus 509 ~s~~~l--s~eD~l~ 521 (745)
T TIGR00963 509 SSRFFL--SLEDNLM 521 (745)
T ss_pred ceEEEE--eccHHHH
Confidence 765543 3344443
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=202.32 Aligned_cols=313 Identities=19% Similarity=0.267 Sum_probs=216.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---CC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---SV 1076 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---sl 1076 (1953)
..+.|..+|..... +..-|+-.-.|+|||++...+...-+......-..|||+|+. +..|....|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 34678888876655 666789999999999887555554444344445679999988 55677777888887 58
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh---HHHHHhhhccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC- 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~a- 1150 (1953)
+|.+|.|+.+.... ..+....+|+|.|++++... ...|..-+.+++|+|||+.+....+ .+...+..+..
T Consensus 124 ~csvfIGGT~~~~d----~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLD----LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred ceEEEecCchhhhh----hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 89999887765432 23445677999999998754 3556666889999999999975444 34555666654
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFML 1229 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr-PFmL 1229 (1953)
+..++.|||=-+| |.+ +|.++++ |.++
T Consensus 200 rQv~a~SATYp~n-Ldn---------------------------------------------------~Lsk~mrdp~lV 227 (980)
T KOG4284|consen 200 RQVAAFSATYPRN-LDN---------------------------------------------------LLSKFMRDPALV 227 (980)
T ss_pred heeeEEeccCchh-HHH---------------------------------------------------HHHHHhccccee
Confidence 4578889884222 111 1222222 2222
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
|--..|+. -+.-+...+..|.....- . .|
T Consensus 228 r~n~~d~~-L~GikQyv~~~~s~nnsv-----------------------------------e-----em---------- 256 (980)
T KOG4284|consen 228 RFNADDVQ-LFGIKQYVVAKCSPNNSV-----------------------------------E-----EM---------- 256 (980)
T ss_pred ecccCCce-eechhheeeeccCCcchH-----------------------------------H-----HH----------
Confidence 21112211 011111111122100000 0 00
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
--|++.|-.++..+ .-...||||....-++-|..+|...|+.+..|.|.|.+.+|..+++.
T Consensus 257 -----------------rlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 257 -----------------RLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred -----------------HHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 11455555555544 12357999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
++.-... +|+||+..++|||-..++.||++|+|-|-..|.+|||||+|.|-..-
T Consensus 318 lr~f~~r---ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 318 LRAFRVR---ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred hhhceEE---EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 9863322 79999999999999999999999999999999999999999997654
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-16 Score=193.04 Aligned_cols=308 Identities=18% Similarity=0.266 Sum_probs=207.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|...|..++.-+..=... .-+-+|--++|+|||++++..+...++ ....+.+.+|+. |..|....|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 36778999999877653332 234588889999999998776666654 234689999998 55778999999997
Q ss_pred -CCeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcc-
Q 000169 1075 -SVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR- 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~- 1149 (1953)
++.|....|+-. .|+.+ ...+..+..+|||.|+..+..... -.+..+|||||-||+.- .....|. .-.
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~-l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~ 410 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEI-LEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQ 410 (677)
T ss_pred cCCeEEEeecccchhHHHHH-HHHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCC
Confidence 577777777643 33333 335677889999999988865433 24678999999999852 2222233 223
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.|.||||||..++.= ..|++.+
T Consensus 411 ~Ph~LvMTATPIPRTLAl----------t~fgDld--------------------------------------------- 435 (677)
T COG1200 411 NPHVLVMTATPIPRTLAL----------TAFGDLD--------------------------------------------- 435 (677)
T ss_pred CCcEEEEeCCCchHHHHH----------HHhcccc---------------------------------------------
Confidence 579999999999887531 1111100
Q ss_pred HHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1230 RRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1230 RRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
-.+.++||+.. .+..+|-....-..+|.++.
T Consensus 436 ----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~-------------------------------------------- 467 (677)
T COG1200 436 ----VSIIDELPPGRKPITTVVIPHERRPEVYERIR-------------------------------------------- 467 (677)
T ss_pred ----chhhccCCCCCCceEEEEeccccHHHHHHHHH--------------------------------------------
Confidence 01234677763 22222211122222333221
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhH--------HHHHHHHHHHH--cCCeEEeecCCC
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTT 1378 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~--------~LDILed~L~~--rGikylRLDGsT 1378 (1953)
.++ ..|+++.+.|.-.+ .+..+...|.. -++++..+||.|
T Consensus 468 -----------------------------~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm 517 (677)
T COG1200 468 -----------------------------EEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRM 517 (677)
T ss_pred -----------------------------HHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCC
Confidence 111 13333333332221 12223333331 266788999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+.+++.+++.+|+++..+ +|+||-+...|+|+++|+.+||+|.. +--++..|--||++|=+...-|..++-
T Consensus 518 ~~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 518 KPAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred ChHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeC
Confidence 999999999999987777 89999999999999999999999998 789999999999999877777755543
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-18 Score=192.48 Aligned_cols=317 Identities=20% Similarity=0.233 Sum_probs=216.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH----HHHHHHHHHHHCCCCe
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV----LVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL----L~QW~~Ef~KwaPslk 1077 (1953)
.|.|.+++.-.+. +.+.+.-.-.|+|||...+-.++..+..+...-..+|+||..- .+|-+.++.+++. ++
T Consensus 109 SPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~ 183 (459)
T KOG0326|consen 109 SPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-IK 183 (459)
T ss_pred CCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-eE
Confidence 3556666655553 3333333678999998877666665554445556899999763 3567788888876 88
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L~-a~~ 1152 (1953)
+.+..|+...|..+.. .....+++|.|++.+..... .-.-.+..++|+|||+.+..... .+.+.+.-++ .+.
T Consensus 184 vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQ 260 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQ 260 (459)
T ss_pred EEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccce
Confidence 8888888877765532 24567999999999976532 22223678999999999976443 3334444443 344
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++.|||= . -..+.|.. |.+
T Consensus 261 illySATF-P------------------~tVk~Fm~-----------------------------------------~~l 280 (459)
T KOG0326|consen 261 ILLYSATF-P------------------LTVKGFMD-----------------------------------------RHL 280 (459)
T ss_pred eeEEeccc-c------------------hhHHHHHH-----------------------------------------Hhc
Confidence 67778771 0 01222322 222
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
++-.+ +. +.+.+.-.+. .+ +|
T Consensus 281 ~kPy~--------IN-----------LM~eLtl~Gv------------------------------tQ----------yY 301 (459)
T KOG0326|consen 281 KKPYE--------IN-----------LMEELTLKGV------------------------------TQ----------YY 301 (459)
T ss_pred cCcce--------ee-----------hhhhhhhcch------------------------------hh----------he
Confidence 21110 00 0000000000 00 00
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
..+..+.|+-+|..++.+|. =...||||+.+...++|+..+...||.+..+|..|.++.|..++.+|+.
T Consensus 302 ---------afV~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 302 ---------AFVEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred ---------eeechhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 01233557777888887764 3468999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
+... .|++|+...+|||+|++++||+||.|-|+..|++|+||.+|.|.-.- -+.|++.+++..-
T Consensus 371 G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLityedrf~L 434 (459)
T KOG0326|consen 371 GKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYEDRFNL 434 (459)
T ss_pred cccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehhhhhhH
Confidence 5544 58899999999999999999999999999999999999999997654 3456666665543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=194.33 Aligned_cols=325 Identities=17% Similarity=0.202 Sum_probs=193.3
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHHH---hCCCCCeEEEec
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LMEF---KGNYGPHLIIVP 1058 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lle~---kg~~GP~LIVVP 1058 (1953)
--|.-|....|++.|...=..++..+..+...|+..+||+|||.++=-++.+ .++. ....+++||++|
T Consensus 151 ~n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~P 230 (675)
T PHA02653 151 GNPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLP 230 (675)
T ss_pred CCCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECc
Confidence 3444555568898888888777777777899999999999999875322221 1110 223458999999
Q ss_pred hH-HHHHHHHHHHHHC-----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccc
Q 000169 1059 NA-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1059 ~S-LL~QW~~Ef~Kwa-----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAH 1132 (1953)
.. ++.+...++.+.. ++..+.+..|+.... .. .......+++|+|..... .. -.++++|||||||
T Consensus 231 rreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~--~t~~k~~~Ilv~T~~L~l---~~--L~~v~~VVIDEaH 301 (675)
T PHA02653 231 RVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI--NTNPKPYGLVFSTHKLTL---NK--LFDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh--hcccCCCCEEEEeCcccc---cc--cccCCEEEccccc
Confidence 87 5667777776533 345555555554321 10 011225689999854211 11 2368899999999
Q ss_pred ccCCchhHHHHHhhhccc--ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1133 RMKDRESVLARDLDRYRC--QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1133 rLKN~~SKlsraLk~L~a--~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
.+-.....+...+..... +..+++|||.-. +... |..+|..|..-.
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~------------------l~~~~~~p~~I~------------- 349 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDR------------------IKEFFPNPAFVH------------- 349 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHH------------------HHHHhcCCcEEE-------------
Confidence 986544444444433321 358999999721 1222 222221110000
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000169 1211 EKKVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (1953)
Q Consensus 1211 Eek~liI~RLhklLrPFmLRRlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak 1289 (1953)
+.. .+.+.....+.....+.+...|- .
T Consensus 350 -------------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~------------------------- 377 (675)
T PHA02653 350 -------------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E------------------------- 377 (675)
T ss_pred -------------------------eCCCcCCCeEEEEeecCcccccchhhh--H-------------------------
Confidence 000 00111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHc-
Q 000169 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR- 1367 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~r- 1367 (1953)
..|..++ .++..+ ...+..+|||+.....++.+.+.|...
T Consensus 378 -------------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~ 419 (675)
T PHA02653 378 -------------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL 419 (675)
T ss_pred -------------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc
Confidence 0011111 111111 124568999999999999999999987
Q ss_pred -CCeEEeecCCCCHHHHHHHHHHhh-cCCCCccEEEEeccccccccCCccCCeEEEcC---CC---------CCchhHHh
Q 000169 1368 -QLVYRRIDGTTSLEDRESAIVDFN-SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQ 1433 (1953)
Q Consensus 1368 -GikylRLDGsTs~eeRqeaIerFN-s~ds~ifVfLLSTrAGGeGLNLQaADtVIifD---pp---------WNP~~d~Q 1433 (1953)
++.+..|||+++.. .+.+++|. .+ . +-+|++|+++++||+++++++||.++ .+ .+...+.|
T Consensus 420 ~~~~v~~LHG~Lsq~--eq~l~~ff~~g--k-~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~Q 494 (675)
T PHA02653 420 PIYDFYIIHGKVPNI--DEILEKVYSSK--N-PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQ 494 (675)
T ss_pred CCceEEeccCCcCHH--HHHHHHHhccC--c-eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHH
Confidence 79999999999864 56778874 32 2 34799999999999999999999997 22 26778999
Q ss_pred hhhcccccCCcceEEEEEEeh
Q 000169 1434 AVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.||++|. +.. .+|+|.+
T Consensus 495 RaGRAGR~-~~G--~c~rLyt 512 (675)
T PHA02653 495 RKGRVGRV-SPG--TYVYFYD 512 (675)
T ss_pred hccCcCCC-CCC--eEEEEEC
Confidence 99999998 333 3445544
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=186.65 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HHHHHhCC-CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YLMEFKGN-YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~Lle~kg~-~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ........ ...+||+.|+. |..+-.-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 34455554433333 367778888999999988765211 11111122 23478889987 555666676665
Q ss_pred C-CCCe-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc--hhHHHHHhh
Q 000169 1073 L-PSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLD 1146 (1953)
Q Consensus 1073 a-Pslk-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk 1146 (1953)
- .+++ +++|.|.. ....+ +....+++++|+|+..|.+- ...+.-....|+|||||++|... .-.+.+.|.
T Consensus 318 syng~ksvc~ygggn-R~eqi---e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGN-RNEQI---EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILL 393 (629)
T ss_pred hhcCcceEEEecCCC-chhHH---HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhh
Confidence 3 4444 45554443 22222 33467889999999998754 23334446789999999999764 446777777
Q ss_pred hcccceeEEec-ccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQRRLLLT-GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~~RLLLT-GTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.++.++..+|| || ...
T Consensus 394 diRPDRqtvmTSAT-WP~-------------------------------------------------------------- 410 (629)
T KOG0336|consen 394 DIRPDRQTVMTSAT-WPE-------------------------------------------------------------- 410 (629)
T ss_pred hcCCcceeeeeccc-Cch--------------------------------------------------------------
Confidence 77777755554 33 110
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
-+||+.....+ +. .++++- .+.+ .+
T Consensus 411 --~VrrLa~sY~K---ep--~~v~vG----------------sLdL--------------------------------~a 435 (629)
T KOG0336|consen 411 --GVRRLAQSYLK---EP--MIVYVG----------------SLDL--------------------------------VA 435 (629)
T ss_pred --HHHHHHHHhhh---Cc--eEEEec----------------ccce--------------------------------ee
Confidence 11222221111 00 111110 0000 00
Q ss_pred CCCCCCCCCccccchh-hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
.|. .... ++...+.|++.+..++.. ...+.||||||....++|-|..-|...||....|||.-.+.+|+
T Consensus 436 ~~s---------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE 505 (629)
T KOG0336|consen 436 VKS---------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDRE 505 (629)
T ss_pred eee---------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHH
Confidence 000 0000 111234455554444443 35788999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
.+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|++|+||++|.|.+.+..
T Consensus 506 ~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 506 MALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred HHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 999999975544 7999999999999999999999999999999999999999999887653
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=182.53 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.1
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC--CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG--ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI 1420 (1953)
.+.++||||+....++.+...|+..+ +.+..++|.++..+|.+.. .. .+|++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999865 5788999999999887653 22 38999999999999986 4666
Q ss_pred EcCCCCCchhHHhhhhccc
Q 000169 1421 IYDPDPNPKNEEQAVARAH 1439 (1953)
Q Consensus 1421 ifDppWNP~~d~QAiGRAh 1439 (1953)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999985
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=184.97 Aligned_cols=313 Identities=22% Similarity=0.283 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHH---HHhCCCCCe-EEEechH-HHHHHHHHHHHHCC--
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLM---EFKGNYGPH-LIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Ll---e~kg~~GP~-LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|.|-.+|.-.++ +...|=-.-+|+|||...|-.+. +.+ +.+...||+ ||+||+. +..|...|.++|+.
T Consensus 248 piq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 248 PIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred cccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 344445544443 44444344599999976654332 232 234456787 5666976 77888899999864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC 1150 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a 1150 (1953)
+++++..+|+.....+.. .. .....+||+|+++|+... ....-.+..|+||||+.+|.... ........+++.
T Consensus 324 gl~~v~~ygGgsk~eQ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp 400 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP 400 (731)
T ss_pred cceEEEeecCCcHHHHHH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC
Confidence 566666555543332321 22 367899999999998653 22333467899999999996533 233333445555
Q ss_pred ce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1151 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1151 ~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
++ .|++++|= .. ++.++
T Consensus 401 drQtllFsaTf--------------------------~~------------------------------kIe~l------ 418 (731)
T KOG0339|consen 401 DRQTLLFSATF--------------------------KK------------------------------KIEKL------ 418 (731)
T ss_pred cceEEEeeccc--------------------------hH------------------------------HHHHH------
Confidence 54 56677762 00 01111
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
..+++. +.+.++ ....-. -+.-|++.-.+|-.
T Consensus 419 ---ard~L~---dpVrvV-qg~vge---------------------------------------an~dITQ~V~V~~s-- 450 (731)
T KOG0339|consen 419 ---ARDILS---DPVRVV-QGEVGE---------------------------------------ANEDITQTVSVCPS-- 450 (731)
T ss_pred ---HHHHhc---CCeeEE-Eeehhc---------------------------------------cccchhheeeeccC--
Confidence 112211 111111 111000 00001111111211
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
...|+.+|.+-|.+.. ...+||||..-....+.|...|+..|+.+..+||++.+.+|.+.|.+
T Consensus 451 ----------------~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 451 ----------------EEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred ----------------cHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 1246667766666654 34589999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|+..... +|+.|+++.+||++....|||+||.--+...+.|+|||.+|.|-+... |.|+|
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGva--yTlvT 573 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVA--YTLVT 573 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccccee--eEEec
Confidence 9986666 799999999999999999999999999999999999999999988443 44444
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-15 Score=189.85 Aligned_cols=318 Identities=21% Similarity=0.187 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~---GP~LIVVP~SLL~Q-W~~Ef~Kw 1072 (1953)
.+|+|.|..++..+.. +.|.++..+||+|||..|+..+...+-..+ .. -.+|-|.|...|.+ -...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999876665544342 11 24799999875554 55556555
Q ss_pred C--CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCC--chhHHH
Q 000169 1073 L--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (1953)
Q Consensus 1073 a--PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (1953)
. -++.+-+-+|......+ +......+||+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++
T Consensus 97 ~~~~G~~v~vRhGDT~~~er---~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK---QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHcCCccceecCCCChHHh---hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 4 35666666775433222 234567889999999988532 23343 456899999999975 345566
Q ss_pred HHhhhc---c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1143 RDLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1143 raLk~L---~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
-.|.++ . .-.|++||||= .++.++ -.||.+.-. +.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------------------------ 210 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------------------------ 210 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------------------------
Confidence 656554 2 24699999994 233333 333322100 00
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nil 1298 (1953)
.-|......+..+.+.++-......
T Consensus 211 ---------------~Iv~~~~~k~~~i~v~~p~~~~~~~---------------------------------------- 235 (814)
T COG1201 211 ---------------EIVDVSAAKKLEIKVISPVEDLIYD---------------------------------------- 235 (814)
T ss_pred ---------------EEEEcccCCcceEEEEecCCccccc----------------------------------------
Confidence 0000011111111111110000000
Q ss_pred HHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC-CeEEeecCC
Q 000169 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGT 1377 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG-ikylRLDGs 1377 (1953)
.| -...+...+.++..+...+|||++.+.+.+.+...|+..+ ..+..-||+
T Consensus 236 -------~~---------------------~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgS 287 (814)
T COG1201 236 -------EE---------------------LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGS 287 (814)
T ss_pred -------cc---------------------hhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccc
Confidence 00 0012233344445556689999999999999999999887 888889999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcc-cccCCcceEEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1452 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRA-hRIGQKKeV~VyrL 1452 (1953)
.+.+.|..+-++|..+.-. .++||....+|||+-.+|.||.|.+|-.-...+||+||+ ||+|....-.||-.
T Consensus 288 lSre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 288 LSRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred ccHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 9999999999999986654 688999999999999999999999999999999999998 67776555444443
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-16 Score=185.09 Aligned_cols=333 Identities=19% Similarity=0.239 Sum_probs=200.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH----------hCCCCC--eEEEechH-HHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF----------KGNYGP--HLIIVPNA-VLVNWK 1066 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~----------kg~~GP--~LIVVP~S-LL~QW~ 1066 (1953)
..|.|...|.-++. .....|=|.|||+|||+.+.-.|.. +.+. ...+.. .|||+|+. |..|..
T Consensus 204 Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 34455555544443 2245567899999999987555544 2211 111122 69999988 667777
Q ss_pred HHHHHHC--CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---h-ccccc-CccEEEcccccccC--Cc
Q 000169 1067 SELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---S-KLSKV-DWKYIIIDEAQRMK--DR 1137 (1953)
Q Consensus 1067 ~Ef~Kwa--PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s-~L~ki-kWd~VIIDEAHrLK--N~ 1137 (1953)
.-|...+ +.+++..+.|+-...++. .+....++|||+|+++|..-. . .+.++ +..++||||++||- .+
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQq---RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQ---RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHH---HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 7777665 568888888876654432 233448899999999986431 1 23332 56799999999994 33
Q ss_pred hhHHHHHhhhcc------cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000169 1138 ESVLARDLDRYR------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211 (1953)
Q Consensus 1138 ~SKlsraLk~L~------a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eE 1211 (1953)
=..+++.|..+. -..-+++|||-. |. ...|.......... +.
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~--------------~~~~~~~~~k~~~k------~~ 405 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLT------------LV--------------LQQPLSSSRKKKDK------ED 405 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEee------------hh--------------hcChhHHhhhccch------hh
Confidence 334444444442 112466676631 00 00010000000000 00
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHH
Q 000169 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1291 (1953)
Q Consensus 1212 ek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~ 1291 (1953)
.....+..| .+.+.-.-+++ + +++++.+.
T Consensus 406 ~~~~kiq~L------------mk~ig~~~kpk---i--iD~t~q~~---------------------------------- 434 (731)
T KOG0347|consen 406 ELNAKIQHL------------MKKIGFRGKPK---I--IDLTPQSA---------------------------------- 434 (731)
T ss_pred hhhHHHHHH------------HHHhCccCCCe---e--EecCcchh----------------------------------
Confidence 000011111 11111111121 1 11222111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeE
Q 000169 1292 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1371 (1953)
Q Consensus 1292 ~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGiky 1371 (1953)
....+..-+-.| |.+....+- .-++ ..-..|.||||+..+.+..|.-+|...+++.
T Consensus 435 --ta~~l~Es~I~C--~~~eKD~yl---yYfl-----------------~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 435 --TASTLTESLIEC--PPLEKDLYL---YYFL-----------------TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred --HHHHHHHHhhcC--CccccceeE---EEEE-----------------eecCCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 111222333334 222111000 0011 1234579999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1372 lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+.||..|.+++|.+-+++|.... ..+||+|+++++|||++.++|||+|..|-+...|++|-||+.|.+... |.|.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm 565 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM 565 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE
Confidence 99999999999999999998733 348999999999999999999999999999999999999999998554 4443
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=201.44 Aligned_cols=314 Identities=16% Similarity=0.233 Sum_probs=181.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
+..+.++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34789999999887775 778899999999999855544444432 245799999987 778899999998753
Q ss_pred -Ce---EEEEecchhhHhHH-HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1076 -VS---CIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 -lk---Vvvy~Gs~deRk~l-~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+. +.+|+|......+. ....+..+.++|||+|++++.+....+.. ++++|||||||+|.......-+.|.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~---- 223 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLK---- 223 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHH----
Confidence 22 23466654332211 11123345799999999999877666654 8999999999998653222222221
Q ss_pred ceeEEecccCCCC-CHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1151 QRRLLLTGTPLQN-DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1151 ~~RLLLTGTPLQN-nL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
|.|- .. .+..+|.++.. +.. ...+. .+..+..+++.
T Consensus 224 -----llGF--~~e~i~~il~~~~~---~~~-----------------------~~~~~-------~~~~~~~~~~~--- 260 (1171)
T TIGR01054 224 -----LLGF--SEELIEKAWKLIRL---RLK-----------------------LYRAL-------HAKKRLELLEA--- 260 (1171)
T ss_pred -----HcCC--CHHHHHHHHHHhhh---ccc-----------------------cchHH-------HHHHHHHHHHh---
Confidence 1110 00 01112222211 000 00000 11122222211
Q ss_pred HHHHhhhhcCCCCceE-EEEEeccC--HHH--HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1230 RRRVEDVEGSLPPKVS-IVLRCRMS--AIQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE-~vV~c~MS--a~Q--r~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+|.+.. ..+.+..| +.. ..++..+. .+... .. ...++.+
T Consensus 261 ----------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~-------~~--------------~~~~r~I 304 (1171)
T TIGR01054 261 ----------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVG-------GG--------------SDTLRNV 304 (1171)
T ss_pred ----------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEec-------Cc--------------cccccce
Confidence 112211 12222222 100 01111000 00000 00 0001111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh---HHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft---~~LDILed~L~~rGikylRLDGsTs~e 1381 (1953)
. |. .+....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||+++
T Consensus 305 ~-~~--------------~~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~-- 364 (1171)
T TIGR01054 305 V-DV--------------YVEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP-- 364 (1171)
T ss_pred E-EE--------------EEecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC--
Confidence 0 00 001111234555666543 57899999998 9999999999999999999999986
Q ss_pred HHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCCCC
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1427 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDppWN 1427 (1953)
...+++|.+++.+ +|++ |+++++|||++. +++|||||+|--
T Consensus 365 --~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 --KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred --HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 3689999976554 4555 699999999999 899999999943
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=193.69 Aligned_cols=375 Identities=17% Similarity=0.166 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..|.++|.+++..+.... .+...+|...||+|||..++.++...+.. .+.+|||||.. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 379999999999887643 33557899999999999998877766642 35799999976 78999999999875 56
Q ss_pred EEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC--chhHHH--HHh----hh
Q 000169 1078 CIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESVLA--RDL----DR 1147 (1953)
Q Consensus 1078 Vvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN--~~SKls--raL----k~ 1147 (1953)
+.+++|... .+...+. .+..+..+|||+|+..+. +.-.++.+|||||+|...- .....+ +.+ ..
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 777776533 3333322 244567899999998764 2224678999999998632 111111 111 12
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~-kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
......+++||||... .++.... +.+.. -...+.+. .+.-..... + ...+... .-...+.+
T Consensus 292 ~~~~~~il~SATps~~---s~~~~~~----g~~~~-~~l~~r~~~~~~p~v~~i---d---~~~~~~~----~~~~~ls~ 353 (679)
T PRK05580 292 LENIPVVLGSATPSLE---SLANAQQ----GRYRL-LRLTKRAGGARLPEVEII---D---MRELLRG----ENGSFLSP 353 (679)
T ss_pred ccCCCEEEEcCCCCHH---HHHHHhc----cceeE-EEeccccccCCCCeEEEE---e---chhhhhh----cccCCCCH
Confidence 2344688899999422 2211110 00000 00000000 000000000 0 0000000 00001111
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh--
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT-- 1304 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi-- 1304 (1953)
.++..+++.+.. ....++.++ . ..+.... ....|-..-+|
T Consensus 354 ~l~~~i~~~l~~----g~qvll~~n---------------------r----------rGy~~~~---~C~~Cg~~~~C~~ 395 (679)
T PRK05580 354 PLLEAIKQRLER----GEQVLLFLN---------------------R----------RGYAPFL---LCRDCGWVAECPH 395 (679)
T ss_pred HHHHHHHHHHHc----CCeEEEEEc---------------------C----------CCCCCce---EhhhCcCccCCCC
Confidence 122212211110 001111110 0 0000000 00000000000
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCC--H
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTS--L 1380 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs--~ 1380 (1953)
|.-|..+. .......+..||....+...++.+ |... |..+....+.+++.|... ++++.++|+++. .
T Consensus 396 C~~~l~~h----~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~~--l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 396 CDASLTLH----RFQRRLRCHHCGYQEPIPKACPEC---GSTD--LVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCceeEE----CCCCeEECCCCcCCCCCCCCCCCC---cCCe--eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 11111110 011112233344322222222211 2222 334445567777777765 889999999986 4
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC---CCc---------hhHHhhhhcccccCCcceEE
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp---WNP---------~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+++++++++|.+++.+ +|++|+....|+|++.++.|+++|.| ..| ..+.|+.||++|.+....|.
T Consensus 467 ~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 6799999999987666 78999999999999999999888776 223 67999999999999888887
Q ss_pred EEEE
Q 000169 1449 VIYM 1452 (1953)
Q Consensus 1449 VyrL 1452 (1953)
+...
T Consensus 544 iqT~ 547 (679)
T PRK05580 544 IQTY 547 (679)
T ss_pred EEeC
Confidence 6554
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=178.53 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+.+|..|..-+ +=...||||.....+..|...|...|+.+..|||.+..++|..++++|+.+... +|++|.+.
T Consensus 316 ~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ 390 (477)
T KOG0332|consen 316 DKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVC 390 (477)
T ss_pred hHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechh
Confidence 3566665533322 223579999999999999999999999999999999999999999999987776 89999999
Q ss_pred ccccCCccCCeEEEcCCCC------CchhHHhhhhcccccCCcceE
Q 000169 1408 GRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDppW------NP~~d~QAiGRAhRIGQKKeV 1447 (1953)
++|||.+.++.||+||+|- ++..|+||+||++|.|.+.-+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 9999999999999999985 688999999999999977654
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=166.30 Aligned_cols=154 Identities=28% Similarity=0.383 Sum_probs=111.8
Q ss_pred CCcHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs 1075 (1953)
+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999887654 78899999999999999998888774 89999997 5899999999888876
Q ss_pred CeEEEEecchh----------hHhHHHHHHHhhccccEEEEeHHHHHhhhhc-------------ccccCccEEEccccc
Q 000169 1076 VSCIYYVGAKD----------QRSRLFSQEVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1076 lkVvvy~Gs~d----------eRk~l~~qei~~~~fdVVITTYEsL~kd~s~-------------L~kikWd~VIIDEAH 1132 (1953)
........... ...............+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 55443221100 0000011123356778999999999765321 233478999999999
Q ss_pred ccCCchhHHHHHhhhcccceeEEecccCC
Q 000169 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1133 rLKN~~SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9865433 55565588889999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-15 Score=191.74 Aligned_cols=317 Identities=20% Similarity=0.206 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---P- 1074 (1953)
.|+.||.++++.+.+ +.+.|++-.||+|||..++..|...+- +.....+|+|-|+. |.....+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999988876 889999999999999999888877664 34445899999976 6666888888885 4
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCC-chhHHHHHhhh
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDR 1147 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~ 1147 (1953)
.+.+..|.|......+. .+.....+|+||+|+++... ...+...+++||||||+|.++. ..|-+.-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r~---~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEERR---AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHHH---HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 56778888865433221 45578899999999998642 1122223589999999999975 33433333333
Q ss_pred c-------c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1148 Y-------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1148 L-------~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~-F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
+ . ....++.|||- ++...|.+. |...|... ...
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~~----------------- 263 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VDE----------------- 263 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-ccC-----------------
Confidence 3 2 23467888883 222233222 22222110 000
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEE-eccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLR-CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~-c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~ni 1297 (1953)
.--|.-..+++. -+........
T Consensus 264 -------------------~g~~~~~~~~~~~~p~~~~~~~~-------------------------------------- 286 (851)
T COG1205 264 -------------------DGSPRGLRYFVRREPPIRELAES-------------------------------------- 286 (851)
T ss_pred -------------------CCCCCCceEEEEeCCcchhhhhh--------------------------------------
Confidence 001111111111 1000000000
Q ss_pred HHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHH----HHHHHcC----C
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----L 1369 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILe----d~L~~rG----i 1369 (1953)
..-.+...+..++..+...+-++|+|+.+...++.+. ..+...+ .
T Consensus 287 ---------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~ 339 (851)
T COG1205 287 ---------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLD 339 (851)
T ss_pred ---------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhh
Confidence 0113445566777777889999999999999998886 4444445 5
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
.+....|++..++|.++...|+.++.. ++++|.++-.|+++-..|.||++-.|- .-..+.|+.||++|-+|.--+.
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEE
Confidence 577889999999999999999987776 899999999999999999999999999 7899999999999999665544
Q ss_pred E
Q 000169 1449 V 1449 (1953)
Q Consensus 1449 V 1449 (1953)
+
T Consensus 417 ~ 417 (851)
T COG1205 417 V 417 (851)
T ss_pred E
Confidence 3
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=187.91 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=89.0
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.+..+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -+||+|+++.+||+++++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEE
Confidence 356799999999999999999987 47899999999999999999999986433 379999999999999999999
Q ss_pred EEcCCC----CCchh--------------HHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp----WNP~~--------------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.+ |||.. +.||.||++|.+ .. .+|+|.+
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~-~G--~cyrL~t 334 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE-PG--VCYRLWS 334 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC-CC--EEEEeCC
Confidence 999876 45554 789999999983 33 3456655
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-16 Score=156.11 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+..+..++.+....+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887667899999999999999999999999999999999999999999999999755 4588899999
Q ss_pred ccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++|+|++.+++||+++++|++..++|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=203.89 Aligned_cols=342 Identities=15% Similarity=0.238 Sum_probs=194.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|.+++++|..++..++. +.+.++..+||+|||...+.+..++. .....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34689999999988886 77889999999999984332222221 1234799999987 77888888888764
Q ss_pred --CCeEEEEecchhhHhHH-HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1075 --SVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l-~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
++.+.+++|+.....+. ....+..+.++|+|+|++.+......+...++++|||||||.|....-.+-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~----- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQ----- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhh-----
Confidence 35667777765433221 1112345679999999998876654444467999999999998531111111111
Q ss_pred eeEEecccCCCCCHH-HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1152 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~-ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
|-|- ...+. ..|.++.. . + ..+... + ...+.+|...+
T Consensus 225 ----llGF--~~e~~~~~~~il~~---~--------------~------~~~~~~--~-----~~~~~~l~~~~------ 262 (1638)
T PRK14701 225 ----LLGF--YEEIIEKAWKIIYL---K--------------K------QGNIED--A-----MEKREILNKEI------ 262 (1638)
T ss_pred ----cCCC--hHHHHHHHHHhhhc---c--------------c------ccccch--h-----hhhhhhhhhhh------
Confidence 0010 00000 00111110 0 0 000000 0 00011222222
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
..+|......+.+.-|...+.....+... .+.+.... .
T Consensus 263 -------~~~~~~~~~ll~~SAT~~~r~~~~~l~~~-~l~f~v~~------------------------------~---- 300 (1638)
T PRK14701 263 -------EKIGNKIGCLIVASATGKAKGDRVKLYRE-LLGFEVGS------------------------------G---- 300 (1638)
T ss_pred -------hhcCCCccEEEEEecCCCchhHHHHHhhc-CeEEEecC------------------------------C----
Confidence 01233322223222221111000000000 00000000 0
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~---LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
.+....+...++.........|.+++..+ +..+||||+.... ++.|..+|...|+++..+||. |...+
T Consensus 301 -~~~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 301 -RSALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred -CCCCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 00000001111111111113455565543 6789999987664 589999999999999999995 89999
Q ss_pred HHhhcCCCCccEEEEec----cccccccCCcc-CCeEEEcCCCC---CchhHHhhh-------------hcccccCCcce
Q 000169 1388 VDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQKRE 1446 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLST----rAGGeGLNLQa-ADtVIifDppW---NP~~d~QAi-------------GRAhRIGQKKe 1446 (1953)
++|.+++.+ +|++| +++++|||++. +.+|||||.|- +...|.|.. ||++|-|..-+
T Consensus 372 ~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 372 DLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 999986666 67777 58899999998 99999999998 777666655 99999997644
Q ss_pred E
Q 000169 1447 V 1447 (1953)
Q Consensus 1447 V 1447 (1953)
+
T Consensus 449 ~ 449 (1638)
T PRK14701 449 G 449 (1638)
T ss_pred h
Confidence 4
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=180.15 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=76.9
Q ss_pred HHHHHHHHHHc--CCeEEeecCCCCHHHH--HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC---C--
Q 000169 1357 LDILEEYLQWR--QLVYRRIDGTTSLEDR--ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP---N-- 1427 (1953)
Q Consensus 1357 LDILed~L~~r--GikylRLDGsTs~eeR--qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW---N-- 1427 (1953)
.+.+++.|... +.++.++|++++...+ ..+++.|.+++.+ +|++|.....|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56777777765 8899999999877655 8999999986666 789999999999999999998776662 2
Q ss_pred -------chhHHhhhhcccccCCcceEEEEEE
Q 000169 1428 -------PKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1428 -------P~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
...+.|+.||++|.+....|.+..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3578999999999998888876544
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=175.69 Aligned_cols=418 Identities=14% Similarity=0.172 Sum_probs=236.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~Q---W~~Ef~KwaPs 1075 (1953)
..++-|+.|---|. .|-|.-..||.|||++++..+..... .+ ..++||+|+..| .+ |...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34445888765443 35588899999999987655543221 22 358999998844 43 666666665 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHH----Hhhhhcccc-----cCccEEEcccccccCCchhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI----MYDRSKLSK-----VDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL----~kd~s~L~k-----ikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
+.|.++.|+.....+. .....+|+++|...| .++.-.+.. ..+.++||||+|.|.= .
T Consensus 152 Ltv~~i~gg~~~~~r~-----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------D 217 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ-----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------D 217 (896)
T ss_pred ceEEEEeCCCCHHHHH-----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------h
Confidence 6776666654332221 122579999999987 333322211 3789999999999842 1
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhh----hcccc-------cC----------Ch--HHHHhhhcCCcccCCCCCCC
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-------FD----------NR--KAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-------F~----------S~--k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
.++.-|++||.+- ...++|..++. |..+. |. +. ..+.+.| +...+.....
T Consensus 218 --eArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~ 290 (896)
T PRK13104 218 --EARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPG 290 (896)
T ss_pred --ccCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCc
Confidence 1234577788653 22445544443 32221 00 00 0000110 0000000000
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000169 1204 DDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (1953)
Q Consensus 1204 e~d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ 1275 (1953)
+ .+.........+.+...|+.. ++.|-+.-|.. +....+|. ..| -+..-+.+.+...-.+.+....
T Consensus 291 ~--~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 291 E--SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred c--cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 000001111223333334332 22222221111 11111221 122 2334455555443322222111
Q ss_pred HH-h-----hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcC
Q 000169 1276 EK-R-----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTG 1344 (1953)
Q Consensus 1276 ek-~-----~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatG 1344 (1953)
.. . ..+......+.........-..|.++.+-+.+.-|.... ...........|+..+..-+..+...|
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g 444 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRK 444 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCC
Confidence 00 0 000000000000001111234566666655544333211 111222344568888888888889999
Q ss_pred CeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc---------
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--------- 1415 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--------- 1415 (1953)
..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+.+|+|+|+.=
T Consensus 445 ~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~~~ 519 (896)
T PRK13104 445 QPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAADLA 519 (896)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhhhh
Confidence 9999999999999999999999999999999999999999999999864 2 8999999999999762
Q ss_pred -----------------------------CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1416 -----------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1416 -----------------------------ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
-=+||.-..+-|-..+.|-.||++|.|.......| +++|+.+.+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 520 NLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23889999999999999999999999999887665 345555543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-14 Score=183.83 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=88.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+. +-||++|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEE
Confidence 457899999999999999999987 5788999999999999999999997643 3489999999999999999999
Q ss_pred EEcCCC----CCc--------------hhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD----PNP--------------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp----WNP--------------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.+ |+| ..+.||.||++|.+ +=.+|+|.+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 333 35899999999984 334555544
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=190.08 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..||..|..||..... ..++||||+....+|.|.+.|...||.+..|||+.+..+|...+++|+++.. .+|++|++
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehhh
Confidence 4588888888887654 7899999999999999999999999999999999999999999999997544 49999999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.+|||+.....||+||.+--...|++|.||++|.|.+.-+.+|.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEe
Confidence 999999999999999999999999999999999999888444443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=186.51 Aligned_cols=149 Identities=22% Similarity=0.170 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Pslk 1077 (1953)
+|++.|..++.-.+.- +.|.|+|.+||+|||+++...|...+.. ..++++.|||.. |+..-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~~---~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---DENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccC---CCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 7999999998655432 7889999999999999998777665542 257999999965 7777888888664 3789
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh---hhhcccccCccEEEcccccccCCc-h-----hHHHHHhhhc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDR-E-----SVLARDLDRY 1148 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k---d~s~L~kikWd~VIIDEAHrLKN~-~-----SKlsraLk~L 1148 (1953)
|.++.|.-+... ....+++|+||||+.+-. +... --...++|||||+|.+... . +-.++....-
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999876542 235678999999998742 2222 2236789999999999764 1 2222222222
Q ss_pred ccceeEEecccC
Q 000169 1149 RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ~a~~RLLLTGTP 1160 (1953)
..-+.++||||-
T Consensus 179 ~~~rivgLSATl 190 (766)
T COG1204 179 ELIRIVGLSATL 190 (766)
T ss_pred cceEEEEEeeec
Confidence 234789999994
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-13 Score=177.97 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC---CeEEeecCCCCHHHH----HHHHHHh-hcCCCCccEEEEe
Q 000169 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDF-NSHDSDCFIFLLS 1403 (1953)
Q Consensus 1332 lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG---ikylRLDGsTs~eeR----qeaIerF-Ns~ds~ifVfLLS 1403 (1953)
++..++..+ ..|.+|||||+.+..+..+.+.|+..+ +.+..+||.++..+| .++++.| +++......+|++
T Consensus 549 ~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 344444433 578899999999999999999998765 678999999999999 5678899 4332222357999
Q ss_pred ccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
|.+...|||+ .+|+||....| ...++||+||+||-|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 57999887666 56899999999999875
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=174.52 Aligned_cols=321 Identities=17% Similarity=0.218 Sum_probs=203.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.-.|-|..++..++. +.+++-|..+|.|||+..+..|...+ ... ...-..+||.|.. |+.|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 355778888888887 78899999999999999887654433 322 1223679999976 7778889999887
Q ss_pred --CC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc----ccccCccEEEcccccccCCchhHHHHHh
Q 000169 1074 --PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1074 --Ps--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~----L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
+. +.+..+........+ ........++++|.|+..+...... +.-.+..++|+||+.++.++. -+...+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk--~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-~f~~Ql 310 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQK--PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-FFVEQL 310 (593)
T ss_pred CCCCCchhhhhcccccchhhc--cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh-hHHHHH
Confidence 32 333333322211111 1123456789999999998876433 333456679999999998761 111111
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
. ++++.+.- |.+. ...|..-+. . . +.++..+
T Consensus 311 a--------------------~I~sac~s--~~i~------~a~FSat~~----------~--~-------VEE~~~~-- 341 (593)
T KOG0344|consen 311 A--------------------DIYSACQS--PDIR------VALFSATIS----------V--Y-------VEEWAEL-- 341 (593)
T ss_pred H--------------------HHHHHhcC--cchh------hhhhhcccc----------H--H-------HHHHHHH--
Confidence 1 11111110 1110 000110000 0 0 0001111
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
.+.++ ...+|-. ...+ ++.+.+=
T Consensus 342 ------i~~~~-------~~vivg~--~~sa--------------------------------------~~~V~Qe---- 364 (593)
T KOG0344|consen 342 ------IKSDL-------KRVIVGL--RNSA--------------------------------------NETVDQE---- 364 (593)
T ss_pred ------hhccc-------eeEEEec--chhH--------------------------------------hhhhhhh----
Confidence 11111 0011111 1100 0000000
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHH-HHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L-~~rGikylRLDGsTs~eeRq 1384 (1953)
.+| ....-+|+..+..++... -.-.+|||.|..+-+..|-..| ..-++.+..+||.-+..+|.
T Consensus 365 ---lvF-----------~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 365 ---LVF-----------CGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred ---hee-----------eecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 000 112246777777777654 3457999999999999999999 78899999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
..+++|+.+... +|++|++.++|||+.++++||+||.|-.-..|++++||++|.|+......||-
T Consensus 429 e~~~~FR~g~Iw---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 429 ETMERFRIGKIW---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred HHHHHHhccCee---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 999999975544 79999999999999999999999999999999999999999999877665553
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=166.13 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=120.6
Q ss_pred HHHHHhcCCCCCCCCCccccc----hh-hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dls----~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|+++-+.+.+..|...... .+ .......|+..|...+......+..|||||.+....+.|...|...|+++..
T Consensus 390 ~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 390 EEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 456777666665544332111 11 1223346888888888888889999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc---cCC-----eEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ---aAD-----tVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|+|.....++.-+...|.. +. ++|+|+.+|+|+|+. .+. +||.++.|-|...|.|+.||++|.|...
T Consensus 470 Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred ecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCc
Confidence 9999876666666666653 23 899999999999995 567 9999999999999999999999999998
Q ss_pred eEEEEEEehhhhhhhh
Q 000169 1446 EVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s 1461 (1953)
.+..| ++.++.+..
T Consensus 545 ~s~~~--~sleD~l~~ 558 (796)
T PRK12906 545 SSRFY--LSLEDDLMR 558 (796)
T ss_pred ceEEE--EeccchHHH
Confidence 87544 344554443
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-12 Score=165.52 Aligned_cols=412 Identities=17% Similarity=0.237 Sum_probs=234.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~Q---W~~Ef~Kwa 1073 (1953)
|...++-|+-|.--| +.|.|.-..||.|||++++..+ ++....+. .+-||+|+..| .+ |...+.+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa-~l~aL~G~--~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPA-YLNALTGK--GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHH-HHHHHcCC--CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 334555588876543 2355888999999999875444 22222232 46699998854 44 444444444
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----h-----hcccccCccEEEcccccccCCchhHHHHH
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~-----s~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
++++.+..|..+...+. .....+|+++|...|--| . ..+....+.++||||++.|.=
T Consensus 150 -Glsv~~i~~~~~~~er~-----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI-------- 215 (830)
T PRK12904 150 -GLSVGVILSGMSPEERR-----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI-------- 215 (830)
T ss_pred -CCeEEEEcCCCCHHHHH-----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee--------
Confidence 56666666643332211 112479999999877322 1 112234789999999999741
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh------------------HHHHhhhcCCcccCCCCCCCChh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDD 1206 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------k~F~e~F~kPf~k~g~~~~~e~d 1206 (1953)
.. ++.-|++||.+- ...++|..++-+...+-... ....+.|..+ +
T Consensus 216 -De--ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~--------~---- 278 (830)
T PRK12904 216 -DE--ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE--------N---- 278 (830)
T ss_pred -cc--CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc--------c----
Confidence 11 233477777643 22445555544433221110 0011111100 0
Q ss_pred hHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH-
Q 000169 1207 WLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1207 ~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
+.........+.+...|+.. ++.+-+.-+. .+....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 279 -ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~ 353 (830)
T PRK12904 279 -LYDPENIALVHHLNQALRAHELFKRDVDYIV---KDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTL 353 (830)
T ss_pred -ccChhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceee
Confidence 00001111223333344332 3333222221 112222221 121 233444455544332222211100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccc-----chhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dl-----s~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+...................|.++-+-+.+.-|..... ..........|+..+...+.++...+..|
T Consensus 354 a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpV 433 (830)
T PRK12904 354 ASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPV 433 (830)
T ss_pred eeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000001111222356777776665544432211 11112234468899999998888899999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccC-----------
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA----------- 1416 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA----------- 1416 (1953)
||||......+.|...|...|+++..|+|. ..+|+..|..|....+. ++|+|+.+|+|+|+.-.
T Consensus 434 LIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~ 508 (830)
T PRK12904 434 LVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALL 508 (830)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhh
Confidence 999999999999999999999999999995 67999999999865554 89999999999997643
Q ss_pred ---------------------------CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1417 ---------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1417 ---------------------------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
=+||.-..+-|-..+.|..||++|.|.......|. ++|+.+..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l--SleD~l~~ 578 (830)
T PRK12904 509 EEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL--SLEDDLMR 578 (830)
T ss_pred hhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE--EcCcHHHH
Confidence 48899999999999999999999999998886653 45555543
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=179.44 Aligned_cols=157 Identities=21% Similarity=0.244 Sum_probs=101.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Psl 1076 (1953)
.+|||||..++....+.+..+-+|=|-+.+|+|||.+++-+...+.. .++|++||.- ||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 48999999999999999888888878888999999999888776653 5789999964 7777443332211 011
Q ss_pred e-EEEEecchhhH------------------hHHH---HHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEccccc
Q 000169 1077 S-CIYYVGAKDQR------------------SRLF---SQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1077 k-Vvvy~Gs~deR------------------k~l~---~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAH 1132 (1953)
. ..++...+-.| ..++ .......+.-||++||+.+-.- .....--.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1 11211111100 0111 1112345667999999988543 333444579999999999
Q ss_pred ccCC------chhHHHHHh--hhcccceeEEecccC
Q 000169 1133 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1133 rLKN------~~SKlsraL--k~L~a~~RLLLTGTP 1160 (1953)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9743 122222211 134667899999999
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-14 Score=147.32 Aligned_cols=166 Identities=28% Similarity=0.314 Sum_probs=117.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~KwaPs- 1075 (1953)
..++++||.+++.++.... .++++..++|+|||..++.++...+.. ....++||++| ..++.+|..++.++++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3579999999999887521 688999999999999888877776643 22468999999 55889999999999876
Q ss_pred --CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC-c-hhHHHHHhhhc-
Q 000169 1076 --VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD-R-ESVLARDLDRY- 1148 (1953)
Q Consensus 1076 --lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN-~-~SKlsraLk~L- 1148 (1953)
.....+.+..... .. ........+|+++||+.+...... +...+|+++||||+|.+.+ . ...+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QL--RKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHH-HH--HHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 3344444433211 11 123334459999999999876544 4556789999999999985 3 33333344444
Q ss_pred ccceeEEecccCCCCCHHHHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
...+++++||||..+.-...+.
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred ccceEEEEecCCchhHHHHHHH
Confidence 5778999999997444333333
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=164.38 Aligned_cols=306 Identities=19% Similarity=0.225 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHCC--CCeE
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWLP--SVSC 1078 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~KwaP--slkV 1078 (1953)
-..|..++-=++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.+.+...+ +..|.. +..+
T Consensus 50 SaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 50 SAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSV 125 (397)
T ss_pred hHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceee
Confidence 3457777655554 78888888899999999777666655433333467999999977664444 444443 3455
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCC--chhHHHHHhhhcccc-ee
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-RR 1153 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~a~-~R 1153 (1953)
....|....+.. ...+.....+|++.|++.+..- ...|......+.|+||+..++. ...+++..+.+++.+ ..
T Consensus 126 ~~~igg~~~~~~--~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv 203 (397)
T KOG0327|consen 126 HACIGGTNVRRE--DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQV 203 (397)
T ss_pred eeecCcccchhh--hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhh
Confidence 555554443322 1234456689999999887543 3356666789999999999864 344556666666443 45
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
+++|||- +.++. +-++
T Consensus 204 ~l~SAT~----p~~vl------------------------------------------------------------~vt~ 219 (397)
T KOG0327|consen 204 VLLSATM----PSDVL------------------------------------------------------------EVTK 219 (397)
T ss_pred eeecccC----cHHHH------------------------------------------------------------HHHH
Confidence 6667763 01100 0000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1234 kDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
+. +... ..+.++-.+.+.+ . .+ +-|..
T Consensus 220 ~f-----~~~p-v~i~vkk~~ltl~---g--------------------------------------ik----q~~i~-- 246 (397)
T KOG0327|consen 220 KF-----MREP-VRILVKKDELTLE---G--------------------------------------IK----QFYIN-- 246 (397)
T ss_pred Hh-----ccCc-eEEEecchhhhhh---h--------------------------------------ee----eeeee--
Confidence 00 0000 0000000000000 0 00 00000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
... ..|+..|..+.. .-...+|||+...-++.|.+.|..+++....++|.+...+|..++++|+.+
T Consensus 247 ----v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 247 ----VEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred ----ccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 000 116666666665 345689999999999999999999999999999999999999999999988
Q ss_pred CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+. +|++|+..++|+|++.++.||+||.|-|...|++++||++|.|-+.-+
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~ 363 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA 363 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCcee
Confidence 777 899999999999999999999999999999999999999999976544
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=173.34 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567777777788778889999999999999999999999999999999999999999999999986443 3688999
Q ss_pred ccccccCCccCCeEEEcC-----CCCCchhHHhhhhcccccCCcceE
Q 000169 1406 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifD-----ppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+++|++++.+++||++| .+-+...|+|++||++|.. ...|
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~v 546 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKV 546 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEE
Confidence 999999999999999999 5668899999999999974 4444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=136.73 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=100.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCC-CCeEEEEecchhhHhHHHHHHHhh
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~Ef~KwaP-slkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+++|.+++|+|||.+++.++..+... ...+++||+||...+. +|...+.++.. ...+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 67999999999999999999888763 4567999999988555 45666777775 56666666655443322 2235
Q ss_pred ccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCchhHHH---HHhhhcccceeEEecccC
Q 000169 1099 LKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~SKls---raLk~L~a~~RLLLTGTP 1160 (1953)
...+|+|+||+.+...... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988765433 2345799999999999987655443 333445777899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-12 Score=168.07 Aligned_cols=305 Identities=19% Similarity=0.248 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~KwaPsl 1076 (1953)
+-.|-|+.+++-...=...+. .-+||-++|-|||=+|+-.+-.. -...+.+.|+||+.+| .|..+.|...|.++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA---V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f 670 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA---VMDGKQVAVLVPTTLLAQQHYETFKERFAGF 670 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHhHHHHHHHHHHHhcCC
Confidence 566889999988876554433 34899999999998875433221 2334689999999865 45677787777665
Q ss_pred eEEEEe----cchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc-
Q 000169 1077 SCIYYV----GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~----Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~- 1151 (1953)
.|-+-. -+..+.+.++ .....+..||||.|+..+.++..+ .+..+|||||=||+. -+.-..|+.+++.
T Consensus 671 PV~I~~LSRF~s~kE~~~il-~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~V 743 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEIL-KGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRANV 743 (1139)
T ss_pred CeeEEEecccCCHHHHHHHH-HHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhccC
Confidence 444422 2333444443 357789999999999988776443 367899999999984 3344567777665
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..|-||||||..+|.= +|. ++ +.|.-+
T Consensus 744 DvLTLSATPIPRTL~M--sm~-----Gi--------------------------------------RdlSvI-------- 770 (1139)
T COG1197 744 DVLTLSATPIPRTLNM--SLS-----GI--------------------------------------RDLSVI-------- 770 (1139)
T ss_pred cEEEeeCCCCcchHHH--HHh-----cc--------------------------------------hhhhhc--------
Confidence 5888999999887431 110 00 000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.-||.....|..-..+..
T Consensus 771 -------~TPP~~R~pV~T~V~~~d------------------------------------------------------- 788 (1139)
T COG1197 771 -------ATPPEDRLPVKTFVSEYD------------------------------------------------------- 788 (1139)
T ss_pred -------cCCCCCCcceEEEEecCC-------------------------------------------------------
Confidence 123333222221111100
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIer 1389 (1953)
...+-+.|++++ ..|..|...++.+..+..+...|+.. ..++...||.|+..+-++++..
T Consensus 789 -----------------~~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~ 850 (1139)
T COG1197 789 -----------------DLLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLD 850 (1139)
T ss_pred -----------------hHHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHH
Confidence 001112334444 35667777778888888888888765 5678889999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEE
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|.+++-+ +|+||-....|||+++|||+|+-+.| +-.++..|--||++|-...--++..
T Consensus 851 F~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 851 FYNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HHcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 9976666 79999999999999999999999998 7899999999999998765544433
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-14 Score=132.40 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=73.9
Q ss_pred HHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1362 d~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
.+|+..|+.+..+||+++.++|..+++.|+.++.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 46889999999999999999999999999986664 899999999999999999999999999999999999999999
Q ss_pred C
Q 000169 1442 G 1442 (1953)
Q Consensus 1442 G 1442 (1953)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-13 Score=172.81 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslkV 1078 (1953)
..||-|.++|.-.+. +..+++-..||.||.+....... -..|-+|||.|+ +|+.....-+.+ .++..
T Consensus 264 ~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 264 GFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred cCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 689999999985554 77889999999999966532221 123478999996 466655555533 34555
Q ss_pred EEEecchhh--HhHHHHHHHhhc--cccEEEEeHHHHHhhhhcc---c-cc---CccEEEcccccccCC-------chhH
Q 000169 1079 IYYVGAKDQ--RSRLFSQEVAAL--KFNVLVTTYEFIMYDRSKL---S-KV---DWKYIIIDEAQRMKD-------RESV 1140 (1953)
Q Consensus 1079 vvy~Gs~de--Rk~l~~qei~~~--~fdVVITTYEsL~kd~s~L---~-ki---kWd~VIIDEAHrLKN-------~~SK 1140 (1953)
....+.... +..++ +.+..+ ..+|+..|++.+......+ . .. -..++||||||.+.. ...+
T Consensus 332 ~~L~s~q~~~~~~~i~-q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAIL-QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeccccccHHHHHHHH-HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 555554433 33333 234455 7899999999997653221 1 11 268999999998753 2223
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
+......+..-..|+||||-...--.|+...|++-.|.+|.+ -|+.+
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~--------------------------- 457 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP--------------------------- 457 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC---------------------------
Confidence 333333455556899999988888888888888877765432 12211
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
....-|.-+.+ . ..+...+..
T Consensus 458 ----------------------NL~yeV~~k~~--~-----------------------------------~~~~~~~~~ 478 (941)
T KOG0351|consen 458 ----------------------NLKYEVSPKTD--K-----------------------------------DALLDILEE 478 (941)
T ss_pred ----------------------CceEEEEeccC--c-----------------------------------cchHHHHHH
Confidence 00111111000 0 000000011
Q ss_pred HHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000169 1301 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ 1380 (1953)
. +....+...||||.....++.+...|...|+....+|.+++.
T Consensus 479 ~-------------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 479 S-------------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred h-------------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 1 112345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.+|..+-..|..+... ++++|=|.|-|||-+++..||+|..|-+..-|.|-.|||+|-|+...|..||=..
T Consensus 522 ~~R~~Vq~~w~~~~~~---VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIR---VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHhcCCCe---EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999975533 7889999999999999999999999999999999999999999999988877543
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-12 Score=145.82 Aligned_cols=309 Identities=17% Similarity=0.193 Sum_probs=205.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
-.|+|.|+|..+-+-++..+.+...-|+..-+|.|||-+....|.+.+. ..+.+.|..|.- ++..-...+..-|++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999999888888877664 456788888954 676677778888888
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccC-CchhHHHHHhhhc--ccce
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRY--RCQR 1152 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLK-N~~SKlsraLk~L--~a~~ 1152 (1953)
..+...+|..+..- ...+||+|-..+.+-. ..||+|||||.+.+- ..+-.+..++..- ....
T Consensus 171 ~~I~~Lyg~S~~~f----------r~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 171 CDIDLLYGDSDSYF----------RAPLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred CCeeeEecCCchhc----------cccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 77777777654321 1345555544444332 368999999999873 1222344444432 2345
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRR 1231 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRR 1231 (1953)
.|.|||||... +..... +.-+.+ .+-+|
T Consensus 236 ~IylTATp~k~----------------------l~r~~~-----------------------------~g~~~~~klp~R 264 (441)
T COG4098 236 TIYLTATPTKK----------------------LERKIL-----------------------------KGNLRILKLPAR 264 (441)
T ss_pred eEEEecCChHH----------------------HHHHhh-----------------------------hCCeeEeecchh
Confidence 89999999311 111000 000000 01111
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.-. +.||-. ..+++. .+-+. +
T Consensus 265 fH~---~pLpvP--kf~w~~--~~~k~---------------------------------------l------------- 285 (441)
T COG4098 265 FHG---KPLPVP--KFVWIG--NWNKK---------------------------------------L------------- 285 (441)
T ss_pred hcC---CCCCCC--ceEEec--cHHHH---------------------------------------h-------------
Confidence 111 123221 222221 00000 0
Q ss_pred CCCccccchhhhhhcccHHH-HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CC-eEEeecCCCCHHHHHHHHH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QL-VYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLe-lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-Gi-kylRLDGsTs~eeRqeaIe 1388 (1953)
.-.|+. .|.++|.+...+|.-||||.....+++-+...|+.. +. ....++..+ ..|.+.++
T Consensus 286 --------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~ 349 (441)
T COG4098 286 --------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVE 349 (441)
T ss_pred --------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHH
Confidence 001222 467788888899999999999999999999998432 22 234455544 57999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC--CCchhHHhhhhcccccCC--cceEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQ--KREVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp--WNP~~d~QAiGRAhRIGQ--KKeV~VyrL 1452 (1953)
.|+++... +|++|....+|+.++.+|++++=.-. ++-...+|--||++|--. +.+|..|.+
T Consensus 350 ~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 350 AFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 99986555 89999999999999999999885554 899999999999999643 355666665
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=158.12 Aligned_cols=419 Identities=16% Similarity=0.214 Sum_probs=234.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~KwaPs 1075 (1953)
..++-|+-|---|. .|-|.-..||.|||++++..+ ++....+ ..++||+|+.-|. .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~-~l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPA-YLNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHH-HHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34455887754442 355778899999999875544 3332222 3589999988553 4888888886 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH----hhh-----hcccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~----kd~-----s~L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
++|-+..+...... ......++|+++|...|- ++. ..+....+.++||||++.+.-.
T Consensus 152 lsv~~i~~~~~~~~-----r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD--------- 217 (908)
T PRK13107 152 LTVGINVAGLGQQE-----KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID--------- 217 (908)
T ss_pred CeEEEecCCCCHHH-----HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc---------
Confidence 66665555433211 122346799999987762 221 1112257889999999987532
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhhhcccccCC----hHHHHh--hhcCCcccCCCCCCCChh--------------
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDD-------------- 1206 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S----~k~F~e--~F~kPf~k~g~~~~~e~d-------------- 1206 (1953)
.++.-|++||.+ ... .++|..++.+...+... .+.|.. .|...- ......-++..
T Consensus 218 --EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~ide-k~~~v~LTe~G~~~~e~~l~~~~~~ 292 (908)
T PRK13107 218 --EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDE-KAKQVHFTERGQEKVENLLIERGML 292 (908)
T ss_pred --cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEec-CCCeeeechHHHHHHHHHHHhCCcc
Confidence 233457788854 332 45665554332211100 000000 000000 00000000000
Q ss_pred ----hHHHHHHHHHHHHHHHHhhHHHH-HHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCch
Q 000169 1207 ----WLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPE 1274 (1953)
Q Consensus 1207 ----~l~eEek~liI~RLhklLrPFmL-RRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~ 1274 (1953)
.+........++.+...|+.+.+ .|-+.-|-. +....+|. ..| -+.--+.+.+...-.+.+...
T Consensus 293 ~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGRim~grrwsdGLHQaIEaKE~v~I~~e 368 (908)
T PRK13107 293 AEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ---DNEVIIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVHIQNE 368 (908)
T ss_pred cCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHhcCCCCCCC
Confidence 00000001122333334443332 221111111 11111111 111 233344444443322222211
Q ss_pred hHHhhhhcChhhH--HHHHHHH-------HHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHH
Q 000169 1275 DEKRRVQKNPIYQ--AKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKL 1340 (1953)
Q Consensus 1275 ~ek~~l~kn~~~~--ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kL 1340 (1953)
.. .+..- .++ .+.|..| ......|.++.+-+.+..|.... ...........|+..+..-+..+
T Consensus 369 ~~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~ 445 (908)
T PRK13107 369 NQ--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDC 445 (908)
T ss_pred ce--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHH
Confidence 10 00000 000 0011111 11223566666655554443221 11112233457888888888888
Q ss_pred HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-----
Q 000169 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS----- 1415 (1953)
Q Consensus 1341 katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa----- 1415 (1953)
.+.|..|||||......+.|..+|...|+++..|++.....+|..+...|+.+. ++|+|+.+|+|+|+.=
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~ 520 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWN 520 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchH
Confidence 999999999999999999999999999999999999999999999999998633 8999999999999762
Q ss_pred --------------------------------CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1416 --------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1416 --------------------------------ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
-=+||.-..+-|-..+.|..||++|.|.......| +++|+.+++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~r 596 (908)
T PRK13107 521 MEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLMR 596 (908)
T ss_pred HhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHHH
Confidence 24899999999999999999999999999887654 345555543
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=159.47 Aligned_cols=320 Identities=21% Similarity=0.263 Sum_probs=210.6
Q ss_pred hhhHHhhhhhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEe
Q 000169 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIV 1057 (1953)
Q Consensus 979 y~lah~i~E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVV 1057 (1953)
|.+..+|.++...+|. |.|.+.+.-+++ +....--.-||+|||...+..+..-+.... ..-+.||+.
T Consensus 30 ~~v~raI~kkg~~~pt--------piqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTPT--------PIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCCC--------chhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 3455566666666553 556666655554 333334456999999888765554433222 223789999
Q ss_pred chH-HHHH---HHHHHHHHCCCCeEE-EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEccc
Q 000169 1058 PNA-VLVN---WKSELHKWLPSVSCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDE 1130 (1953)
Q Consensus 1058 P~S-LL~Q---W~~Ef~KwaPslkVv-vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDE 1130 (1953)
|+. |..| ...++.+++ .+++. .|+|..-+.. . .....+.||||+|+..+..-.. .|.--...|||+||
T Consensus 98 ptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeq-f---~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQ-F---ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred CcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHH-H---HHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 987 4444 334444443 34444 5555443321 1 1223578999999998864321 13334578999999
Q ss_pred ccccCC--chhHHHHHhhhcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1131 AQRMKD--RESVLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1131 AHrLKN--~~SKlsraLk~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
+.++-. ..-.+.+.+.++... ..+++|||- .+. |..|... |
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~------lv~faka--------------------G--------- 216 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRD------LVDFAKA--------------------G--------- 216 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chh------hHHHHHc--------------------c---------
Confidence 999853 456778888888654 478999984 111 1111110 0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
+..|.++| -||+.. .++.
T Consensus 217 ---------------l~~p~lVR---ldvetk------------ise~-------------------------------- 234 (529)
T KOG0337|consen 217 ---------------LVPPVLVR---LDVETK------------ISEL-------------------------------- 234 (529)
T ss_pred ---------------CCCCceEE---eehhhh------------cchh--------------------------------
Confidence 01111111 111110 0000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
.+.+ .+.++...|...|..|+..... .++.+||+....+++++...|+..
T Consensus 235 -----------lk~~------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~ 284 (529)
T KOG0337|consen 235 -----------LKVR------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF 284 (529)
T ss_pred -----------hhhh------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc
Confidence 0000 0112234566777777766432 568999999999999999999999
Q ss_pred CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1368 GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
|+....+.|++....|..-+.+|+..... +|+.|+++.+|+|++--|+||+||.|-.+..+++|+||+.|.|.+..
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 99999999999999999999999976655 89999999999999999999999999999999999999999997754
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-12 Score=169.78 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=84.0
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCe---EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGik---ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
....+|||+.....++.+.+.|...++. ++.|+|+++.++|..+++.+ + .+-+|++|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g-~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----S-GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----C-CeeEEEeccHHhhccccCcceEE
Confidence 4567999999999999999999988775 66799999999999887653 2 24479999999999999999999
Q ss_pred EEcC---------------CCCCc---hhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYD---------------PDPNP---KNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifD---------------ppWNP---~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++ .+..| ..+.||.||++|.+ . =.+|+|++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~-~--G~c~rLyt 409 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS-E--GICIRLYS 409 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC-C--cEEEEeCC
Confidence 9985 23333 67999999999994 2 23445544
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=158.88 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=103.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|..++..|+.+.. .+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 3467777778888888889999999999999999999999999999999999999999999999986443 3688999
Q ss_pred ccccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccCCcceE
Q 000169 1406 AAGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+++|++++.+++||++|. +-++..|+|++||++|- ....|
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~ 550 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKV 550 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEE
Confidence 9999999999999999997 46889999999999994 34443
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=147.99 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=114.6
Q ss_pred HHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|.++.+.+.+..|.... ...........|...+..-+..+...|..|||-|.+...-+.|...|...|+++..
T Consensus 518 ~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~v 597 (970)
T PRK12899 518 REFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTV 597 (970)
T ss_pred HHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCccee
Confidence 4566766666554443322 11122233357888888878888889999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccC--------CeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA--------DtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|+.... +.-..+|.+- + ..-.+.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|.|...
T Consensus 598 LNak~~-~~Ea~iia~A--G--~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 598 LNAKNH-AQEAEIIAGA--G--KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred cccchh-hhHHHHHHhc--C--CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCC
Confidence 988633 3333455433 2 223489999999999997643 38899999999999999999999999998
Q ss_pred eEEEEEEehhhhhhhh
Q 000169 1446 EVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s 1461 (1953)
....| +++++.+..
T Consensus 673 ss~f~--lSlEDdL~~ 686 (970)
T PRK12899 673 AAKFF--LSFEDRLMR 686 (970)
T ss_pred ceeEE--EEcchHHHH
Confidence 87654 345555544
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-10 Score=148.09 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|...+..+...+..|||||.++...+.|..+|...|+++..|++ +..+|+..|..|....+. ++|+|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEecc
Confidence 346889999999888889999999999999999999999999999999997 678999999999865544 899999
Q ss_pred ccccccCCccCC--------eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1406 AAGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1406 AGGeGLNLQaAD--------tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
.+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+.+
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lmr 716 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELMR 716 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHHH
Confidence 999999999433 45899999999999999999999999988743 3455555544
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=144.31 Aligned_cols=322 Identities=16% Similarity=0.159 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy 1081 (1953)
+.|..++.-++. .+....++.+||.||++..-... |+. .|-++||.|.- |+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 678888887775 34557899999999997653322 221 24678888865 666666666654211111112
Q ss_pred ecchhhHhHHHHHH-HhhccccEEEEeHHHHHhh-----hhcc-cccCccEEEcccccccCC------chhHHHHHhhh-
Q 000169 1082 VGAKDQRSRLFSQE-VAALKFNVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKD------RESVLARDLDR- 1147 (1953)
Q Consensus 1082 ~Gs~deRk~l~~qe-i~~~~fdVVITTYEsL~kd-----~s~L-~kikWd~VIIDEAHrLKN------~~SKlsraLk~- 1147 (1953)
.-+..+|.+++... .......++.+|++....+ ...| ......|+||||||.+-- +.....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 23445666665432 2244556888888876433 2222 234578999999998742 22222233332
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhccc-ccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE-VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~-iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
+..---+.||||--..--+|++..|.+-.|- +|.+ ..|...+
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NL------------------------------------ 216 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNL------------------------------------ 216 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhh------------------------------------
Confidence 2233468899998777788888888877662 2221 1121110
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
+|+...... +..-+..|.-.|.
T Consensus 217 --------------------------------FYD~~~K~~--------------------------I~D~~~~LaDF~~ 238 (641)
T KOG0352|consen 217 --------------------------------FYDNHMKSF--------------------------ITDCLTVLADFSS 238 (641)
T ss_pred --------------------------------hHHHHHHHH--------------------------hhhHhHhHHHHHH
Confidence 011000000 0000000111111
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
|-+-....+.+. . +.-...-||||..++..+.|+-.|..+||....+|.+.+..+|..+
T Consensus 239 ~~LG~~~~~~~~---------~------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 239 SNLGKHEKASQN---------K------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HhcCChhhhhcC---------C------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 110000000000 0 0112346999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
-+.|-.++.+ +|++|-..|.|+|-+++..||+.|++-|..-|.|--|||+|-|-..-|+.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999877766 78999999999999999999999999999999999999999999889999985
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=150.01 Aligned_cols=309 Identities=20% Similarity=0.192 Sum_probs=200.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHH-HHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQV-MALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQA-IALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--s 1075 (1953)
+|.|-|..+|..-+ -++.|-++...|++|||+++ +|-|..++ ...+++|++||.-.+.| =.++|.+.+. +
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999886432 24677799999999999876 44444444 34578999999875555 5567877664 3
Q ss_pred CeEEEEecchhhHhHHH-HHHHhhccccEEEEeHHHHH---hhhhcccccCccEEEcccccccCC--chhHHHHH---hh
Q 000169 1076 VSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKD--RESVLARD---LD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~-~qei~~~~fdVVITTYEsL~---kd~s~L~kikWd~VIIDEAHrLKN--~~SKlsra---Lk 1146 (1953)
+++.+-.|....+..-- .......+.||+|.||+-+- +.-..+ .+...|||||.|.+.. ....+--. |+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcc--cccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 55556666554332210 00123567899999998653 322222 3678999999999975 22333222 33
Q ss_pred hc-ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RY-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L-~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+ .....+.||||- .|+.||..-|+.-.. .
T Consensus 368 ~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV-----------------~------------------------------ 398 (830)
T COG1202 368 YLFPGAQFIYLSATV--GNPEELAKKLGAKLV-----------------L------------------------------ 398 (830)
T ss_pred HhCCCCeEEEEEeec--CChHHHHHHhCCeeE-----------------e------------------------------
Confidence 33 345688999994 455555443331100 0
Q ss_pred HHHHHHHHhhhhcCCCC-ceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1226 PFMLRRRVEDVEGSLPP-KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPp-KvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
-..-|- ...++++|.=..
T Consensus 399 -----------y~~RPVplErHlvf~~~e~-------------------------------------------------- 417 (830)
T COG1202 399 -----------YDERPVPLERHLVFARNES-------------------------------------------------- 417 (830)
T ss_pred -----------ecCCCCChhHeeeeecCch--------------------------------------------------
Confidence 001121 122333332111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH----HhcCC--eeEEeechhHHHHHHHHHHHHcCCeEEeecCCC
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTGH--RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL----katGh--KVLIFSQft~~LDILed~L~~rGikylRLDGsT 1378 (1953)
.|..++.+++..- ...|. .+|||+..+.-+..|+++|..+|++...+|+++
T Consensus 418 -----------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL 474 (830)
T COG1202 418 -----------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGL 474 (830)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCC
Confidence 0111111111110 12233 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cCCCC-CchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDPDP-NPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fDppW-NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
+..+|..+-..|.+.+.. .+++|.|.+-|+|+++. .||| +...| +|..+.|..|||+|.+=...=.||.++
T Consensus 475 ~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 475 PYKERKSVERAFAAQELA---AVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred cHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 999999999999976665 78999999999999954 4443 44455 999999999999999866444555553
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=163.96 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=84.3
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCC---eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGi---kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
....+|||+.....++.+.+.|...++ .++.++|+++.++|.++++.+. . +-|||+|+++.+||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----C-ceEEEeccHHHhccccCCeeEE
Confidence 346899999999999999999987754 5788999999999998865442 2 3479999999999999999999
Q ss_pred EEcCCC-----------------C-CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD-----------------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp-----------------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.. | +-..+.||.||++|.| +=.+|+|.+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyt 402 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYS 402 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecC
Confidence 998732 1 4468999999999998 333456655
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=120.87 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcc
Q 000169 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438 (1953)
Q Consensus 1359 ILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRA 1438 (1953)
.|.++|...++.+..++|.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4678888889999999999999999999999997554 5889999999999999999999999999999999999999
Q ss_pred cccC
Q 000169 1439 HRIG 1442 (1953)
Q Consensus 1439 hRIG 1442 (1953)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=129.87 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs--lkVv 1079 (1953)
|+|.+++.-+.. +.+.|+..++|+|||..++..+...+... ..+.+||+||.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987776655433 445899999965 888888899999864 6777
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCc--hhHHHHHhhhc---ccce
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQR 1152 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L---~a~~ 1152 (1953)
.+.|........ ......+.+|+|+|++.+...... +.-.+.++|||||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777655422111 112245789999999999866432 22234899999999999652 22233333333 3456
Q ss_pred eEEecccCCCCCHH
Q 000169 1153 RLLLTGTPLQNDLK 1166 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ 1166 (1953)
.+++||||- .++.
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 999999996 4443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-11 Score=151.38 Aligned_cols=299 Identities=19% Similarity=0.180 Sum_probs=178.0
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHHHCC--CCeEEEEecc
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVGA 1084 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~KwaP--slkVvvy~Gs 1084 (1953)
.|+.+.|.|+|.+||+|||..+...|+.++..+. +.-+++.|+|.. |...-.+.|.+-+. ++.|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 4778899999999999999999888888776321 233789999965 55545555554444 6888888887
Q ss_pred hhhHhHHHHHHHhhccccEEEEeHHHHH---h----hhhcccccCccEEEcccccccCCchh-----HHHHHhhhc----
Q 000169 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIM---Y----DRSKLSKVDWKYIIIDEAQRMKDRES-----VLARDLDRY---- 1148 (1953)
Q Consensus 1085 ~deRk~l~~qei~~~~fdVVITTYEsL~---k----d~s~L~kikWd~VIIDEAHrLKN~~S-----KlsraLk~L---- 1148 (1953)
...-+. ...+.+|+|||++.+- + +...+. ...+|||||.|-+..... ..++.++..
T Consensus 202 ~ql~~t------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 202 TQLTKT------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred chhhHH------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 644321 2457899999998651 1 111122 467999999999976433 344444332
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
..-+.++||||- -|+.|+. .||........-.|...|. |.-
T Consensus 274 s~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yR----------------------------------Pvp 314 (1230)
T KOG0952|consen 274 SMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYR----------------------------------PVP 314 (1230)
T ss_pred hheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccc----------------------------------ccc
Confidence 234678999993 1344443 3443333222233333221 110
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
|+ ....-.++.-...+....+ .
T Consensus 315 L~------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~----- 336 (1230)
T KOG0952|consen 315 LT------------QGFIGIKGKKNRQQKKNID-----------------------------------------E----- 336 (1230)
T ss_pred ee------------eeEEeeecccchhhhhhHH-----------------------------------------H-----
Confidence 00 0000001000000000000 0
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----CCeE-------------
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLVY------------- 1371 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r----Giky------------- 1371 (1953)
.+.++++ +....||.|+||+..+...--.+..|..+ |..-
T Consensus 337 ----------------------~~~~kv~-e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 337 ----------------------VCYDKVV-EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred ----------------------HHHHHHH-HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 0112222 23457888999987766554444444332 2221
Q ss_pred ------EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchh----------HHhhh
Q 000169 1372 ------RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EEQAV 1435 (1953)
Q Consensus 1372 ------lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~----------d~QAi 1435 (1953)
..-|.++...+|.-+=+.|..+..+ +|++|...+.|+||++--.+|-=..-|++.. .+|-.
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQif 470 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIF 470 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHH
Confidence 2235567778888888889875554 7999999999999997666665555566654 68999
Q ss_pred hcccccCCc
Q 000169 1436 ARAHRIGQK 1444 (1953)
Q Consensus 1436 GRAhRIGQK 1444 (1953)
|||+|..=.
T Consensus 471 GRAGRPqFd 479 (1230)
T KOG0952|consen 471 GRAGRPQFD 479 (1230)
T ss_pred hccCCCCCC
Confidence 999998543
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=133.01 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k--g~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... ...+.+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988776 77899999999999998665554444333 3445789999976 88889999888864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch-h-HHHHHhhhcc-
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE-S-VLARDLDRYR- 1149 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~-S-KlsraLk~L~- 1149 (1953)
++.+..+.|........ .......+|+|+|.+.+.... ..+.-..++++||||+|.+.+.. . .+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 57777777765543322 122357899999998776532 12223467899999999986543 1 2222333444
Q ss_pred cceeEEecccCC
Q 000169 1150 CQRRLLLTGTPL 1161 (1953)
Q Consensus 1150 a~~RLLLTGTPL 1161 (1953)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 456899999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-10 Score=144.61 Aligned_cols=327 Identities=17% Similarity=0.124 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHH-HHHHHHHHHHHCCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAV-LVNWKSELHKWLPSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPsl 1076 (1953)
-..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|..+ +..-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 356899999999999877766578999999999999999888887765 234567788889774 556777788877654
Q ss_pred eEEEE--ecchhhHhHHHHHH-----------HhhccccEEEEeHHHHHhhh------hcccccCccEEEcccccccCCc
Q 000169 1077 SCIYY--VGAKDQRSRLFSQE-----------VAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1077 kVvvy--~Gs~deRk~l~~qe-----------i~~~~fdVVITTYEsL~kd~------s~L~kikWd~VIIDEAHrLKN~ 1137 (1953)
.+... +|.....-...... ....-+.+.+++...+.... ..+..+-..++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44443 55443321111100 00111222222222222110 1133345678999999998654
Q ss_pred -hhHH-HHHhhhc--ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000169 1138 -ESVL-ARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213 (1953)
Q Consensus 1138 -~SKl-sraLk~L--~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek 1213 (1953)
.... ...+..+ .....|++|||+- ..|.+.+...+...+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~~~~~~~~~-------------- 397 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLKKALGKGRE-------------- 397 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHHHHHhcccc--------------
Confidence 2222 2222222 2456899999971 1111111100000000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000169 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (1953)
Q Consensus 1214 ~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~s 1293 (1953)
.+ ...+ .|+
T Consensus 398 ---------------------~~---~~~~-----~~~------------------------------------------ 406 (733)
T COG1203 398 ---------------------VV---ENAK-----FCP------------------------------------------ 406 (733)
T ss_pred ---------------------ee---cccc-----ccc------------------------------------------
Confidence 00 0000 000
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1294 L~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
.++.+.+......+... ... ..+......-...+.+|+|-|+.+..+..+...|+..+.+++.
T Consensus 407 ----------~~~e~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 407 ----------KEDEPGLKRKERVDVED------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred ----------cccccccccccchhhhh------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 00000000000000000 000 1112222333457899999999999999999999999888999
Q ss_pred ecCCCCHHHHHHHHHHhhcC-CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC--CcceEEEE
Q 000169 1374 IDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVKVI 1450 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~-ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG--QKKeV~Vy 1450 (1953)
||+..+..+|.+.++.+..- ..+-..++|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.|+
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 99999999999988865531 112234799999999999987 666663 1123456889999999999 45556665
Q ss_pred EE
Q 000169 1451 YM 1452 (1953)
Q Consensus 1451 rL 1452 (1953)
..
T Consensus 547 ~~ 548 (733)
T COG1203 547 ND 548 (733)
T ss_pred ec
Confidence 43
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=133.88 Aligned_cols=313 Identities=18% Similarity=0.152 Sum_probs=214.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslk 1077 (1953)
.+.||.|+.+++-... +...+|...+|-||++..-...+ -..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal------~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPAL------CADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHH------hcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999987776 77789999999999966533221 134678999996 577777777776654433
Q ss_pred EEEEecchhhHhHHHHHHH--hhccccEEEEeHHHHHhhhh-------cccccCccEEEcccccccCC------chhHHH
Q 000169 1078 CIYYVGAKDQRSRLFSQEV--AALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKD------RESVLA 1142 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei--~~~~fdVVITTYEsL~kd~s-------~L~kikWd~VIIDEAHrLKN------~~SKls 1142 (1953)
.+--..++.+.++. ...+ ....|.++..|++.+.+... .|....|.+|.|||.|.+.. +..+..
T Consensus 163 ~lnansske~~k~v-~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 163 MLNANSSKEEAKRV-EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred hccCcccHHHHHHH-HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33333333333322 1222 24678899999998876532 24445789999999997742 333334
Q ss_pred HHhh-hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1143 RDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1143 raLk-~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
-.|+ .|+....|+||+|...+-+.|.-.+|..-. .-.|..-|+.|-.+..
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~ye----------------------- 292 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKYE----------------------- 292 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCceeE-----------------------
Confidence 4444 577788999999998888777766554221 1123333433321110
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
++.-+-
T Consensus 293 -------------------------v~qkp~------------------------------------------------- 298 (695)
T KOG0353|consen 293 -------------------------VRQKPG------------------------------------------------- 298 (695)
T ss_pred -------------------------eeeCCC-------------------------------------------------
Confidence 000000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH--HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCC
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL--katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs 1379 (1953)
.--+++.+|..-+ .-.|..-||||-...-.+.+...|+..||....+|..+.
T Consensus 299 --------------------------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 299 --------------------------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred --------------------------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 0001111111111 124667799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHh--------------------------
Q 000169 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ-------------------------- 1433 (1953)
Q Consensus 1380 ~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~Q-------------------------- 1433 (1953)
+++|..+-..|-.+... +++.|-|.|.|||-+++..||+-..+-+...|.|
T Consensus 353 p~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 99999988888765444 6888999999999999999999999999999999
Q ss_pred -----------------hhhcccccCCcceEEEEEEeh
Q 000169 1434 -----------------AVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1434 -----------------AiGRAhRIGQKKeV~VyrLvT 1454 (1953)
--||++|-|++-+|..||-.+
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 468888999988887776544
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-08 Score=128.95 Aligned_cols=414 Identities=16% Similarity=0.134 Sum_probs=227.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kwa 1073 (1953)
|...++-|+-|..-|+. |.|.-..||.|||+++...+. +... ....+.||+|+..|.. |...+.+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~-l~AL--~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAA-GYAL--QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHH-HHHH--cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 33455569988876653 457778899999999865443 3322 2346888899886543 666666655
Q ss_pred CCCeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHH-----Hhh----hhcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL-----~kd----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+++|.+..+... .|+. ....||+-+|-.-| +.. ........+.++||||++.+.=
T Consensus 147 -GLsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI------ 212 (764)
T PRK12326 147 -GLTVGWITEESTPEERRA-------AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV------ 212 (764)
T ss_pred -CCEEEEECCCCCHHHHHH-------HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee------
Confidence 466666655432 2222 22457777775443 221 1222334689999999997641
Q ss_pred HHhhhcccceeEEecccCC-CCCHHHHHHHHhhhcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhh
Q 000169 1143 RDLDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPL-QNnL~ELwSLLnFLlP~i-F~----------S~---k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
. .++.-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... . .|
T Consensus 213 ---D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-------~----ly 276 (764)
T PRK12326 213 ---D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-------D----LY 276 (764)
T ss_pred ---c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-------c----cc
Confidence 1 2345678887553 233334444444443321 10 00 0011111100 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEecc-------CHHHHHHHHHHHHccCcccCchhHH--
Q 000169 1208 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRM-------SAIQSAIYDWIKATGTLRVDPEDEK-- 1277 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~M-------Sa~Qr~LYk~I~~~~~l~ld~~~ek-- 1277 (1953)
.. +.....++.+...|+. +++.|-+.-+.. +....+|. .. ..+..-+.+.+...-.+.+......
T Consensus 277 ~~-~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~A 351 (764)
T PRK12326 277 SE-EHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLD 351 (764)
T ss_pred Cc-chhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeee
Confidence 00 0001112233333332 233332221211 11111111 11 2234445555544333322221100
Q ss_pred ----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeE
Q 000169 1278 ----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348 (1953)
Q Consensus 1278 ----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVL 1348 (1953)
...+...................|+++.+-+.+.-|.... ...........|+..+..-+.++.+.|..||
T Consensus 352 sIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVL 431 (764)
T PRK12326 352 TITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVL 431 (764)
T ss_pred hhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000000000000111122234677776666554433221 1111222344678877777778889999999
Q ss_pred EeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-------------
Q 000169 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------------- 1415 (1953)
Q Consensus 1349 IFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa------------- 1415 (1953)
|.|......+.|...|...|+++..|+.... ++-..+|.+-= ....+.|+|..+|+|.|+.-
T Consensus 432 Vgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG----~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~ 506 (764)
T PRK12326 432 VGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAG----KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAE 506 (764)
T ss_pred EEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcC----CCCcEEEEecCCCCccCeecCCCcccchHHHHH
Confidence 9999999999999999999999999998744 33355555432 22348999999999999763
Q ss_pred --CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhh
Q 000169 1416 --ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462 (1953)
Q Consensus 1416 --ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~ 1462 (1953)
-=+||....+-|-..+.|..||++|.|.......| +++|+.++..
T Consensus 507 ~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~~ 553 (764)
T PRK12326 507 LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVAA 553 (764)
T ss_pred cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHHh
Confidence 24899999999999999999999999999887655 3556666543
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-09 Score=137.73 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=78.2
Q ss_pred HHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1333 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1333 LdrIL~kL-katGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
+...|.++ ...+.++|||+....+++.+.+.|.. .++... ..+.. ..|.+++++|+.++.. +|++|..+
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33334333 44667899999999999999999875 344433 33332 5789999999875444 78889999
Q ss_pred ccccCCccC--CeEEEcCCCC-Cch-----------------------------hHHhhhhcccccCCcceEEE
Q 000169 1408 GRGLNLQSA--DTVIIYDPDP-NPK-----------------------------NEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1408 GeGLNLQaA--DtVIifDppW-NP~-----------------------------~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+|||++.. ..|||.-.|+ +|. ...|++||+.|-...+-|.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 999999974 5778877665 222 24488889988876665533
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=138.42 Aligned_cols=159 Identities=22% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEech-HHHHHHHHHHHHHCCCCeEEEEecchhhH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVPN-AVLVNWKSELHKWLPSVSCIYYVGAKDQR 1088 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--------~GP~LIVVP~-SLL~QW~~Ef~KwaPslkVvvy~Gs~deR 1088 (1953)
...|-+||.++|.|||-.++.-|..-+..+.+ ...+.-|+|. +|+.-|...|.+|...+.+.|..-+.+..
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 34567899999999999887766554432221 1256788995 58888999999999877666655444432
Q ss_pred hHHHHHHHhhccccEEEEeHHHH---Hhhhhcccc-cCccEEEcccccccC-CchhHH----HHHhhhc----ccceeEE
Q 000169 1089 SRLFSQEVAALKFNVLVTTYEFI---MYDRSKLSK-VDWKYIIIDEAQRMK-DRESVL----ARDLDRY----RCQRRLL 1155 (1953)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYEsL---~kd~s~L~k-ikWd~VIIDEAHrLK-N~~SKl----sraLk~L----~a~~RLL 1155 (1953)
.. ......-+|+|||++.. .+......- --++++||||.|-+- +.+..+ .+.+++. ...+.++
T Consensus 404 l~----~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVG 479 (1674)
T KOG0951|consen 404 LG----KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVG 479 (1674)
T ss_pred ch----hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeee
Confidence 11 11234568999999865 221111111 136789999999983 233333 2333332 2346799
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCC
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (1953)
||||- -|..|+-++|..-.+++|..
T Consensus 480 LSATL--PNy~DV~~Fl~v~~~glf~f 504 (1674)
T KOG0951|consen 480 LSATL--PNYEDVASFLRVDPEGLFYF 504 (1674)
T ss_pred ecccC--CchhhhHHHhccCccccccc
Confidence 99994 35677777665444666653
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-08 Score=125.72 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=115.5
Q ss_pred HHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|.++.+-+.+.-|.... ...........|+..+..-+..+...|..|||-|.+...-+.|...|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 4567776666554443221 11222334457888888888888999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc-------------------------------------cC
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1416 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ-------------------------------------aA 1416 (1953)
|+.... ++-..+|.+ ++.. -.+.|+|..+|+|.|+. .-
T Consensus 479 LNAk~~-~~EA~IIa~--AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 887643 333445543 2322 24789999999999975 23
Q ss_pred CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1417 DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
=+||.-..+-|-..+.|..||++|.|.......|. ++++.+.+
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 48999999999999999999999999998876653 34555554
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=123.66 Aligned_cols=109 Identities=26% Similarity=0.332 Sum_probs=96.7
Q ss_pred HHHHHHHHH---HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1332 ILDRILIKL---QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1332 lLdrIL~kL---katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
-++.++.++ .+.+.||||-+-...|++-|.+||...|+++..+|.....-+|.++|.+.+.+.-+ +|+....+-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 344555444 56789999999999999999999999999999999999999999999999986555 799999999
Q ss_pred cccCCccCCeEEEcCCCC-----CchhHHhhhhcccccCC
Q 000169 1409 RGLNLQSADTVIIYDPDP-----NPKNEEQAVARAHRIGQ 1443 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppW-----NP~~d~QAiGRAhRIGQ 1443 (1953)
+||||+.+..|.|+|.|- +-...+|-||||.|--.
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~ 547 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC
Confidence 999999999999999884 78889999999999543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=131.21 Aligned_cols=128 Identities=26% Similarity=0.409 Sum_probs=92.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|..++..|.- |+..+..+.--.|+ .+||+|||--.+...+++.. ++ ++++||+|+. |+.|-.+.+.++..
T Consensus 80 G~~~ws~QR~---WakR~~rg~SFaii-APTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRV---WAKRLVRGKSFAII-APTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHH---HHHHHHcCCceEEE-cCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4578888976 44444444333455 58999999665554444442 22 6899999987 66777788888873
Q ss_pred ---CCeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc
Q 000169 1075 ---SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1075 ---slkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL 1134 (1953)
...++ ||+.- .++.. ....+..++|+|+|||-.++.++...|.+.+|++|+||.++-+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee-~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEE-ALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHH-HHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 33344 88863 33333 3445778999999999999999999999999999999999876
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=117.91 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHHH---HHCCC
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSELH---KWLPS 1075 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G--P~LIVVP~S-LL~QW~~Ef~---KwaPs 1075 (1953)
.+-|.+++...+- +-..+.-.-.|.|||.... ++.|-...+..| .+||+|-+. |..|..+|+. ++.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3567787766664 4445556778999996653 333333334334 568888766 6677777755 55799
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccC
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLK 1135 (1953)
+++.++.|+-...+.. +.....++|||.|++.+... ...|.-.+..+.|+|||..|.
T Consensus 140 vkvaVFfGG~~Ikkde---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred ceEEEEEcceeccccH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 9999998876544321 23344789999999988643 234555577899999999874
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=135.46 Aligned_cols=159 Identities=20% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
..|+||.-...+.+. .. ..+.+|++.+-+|+|||++++-+...+.+. .....++|||-.. |-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566665555444443 11 234579999999999999997776666654 5556777888654 77888999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh----cccccCccEEEcccccccCCchhHHHHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s----~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|..+........-..+.+..++ .+....-.|+|||.+.|..... .....+.-+||+|||||-- ...+.+.
T Consensus 323 f~~~~~~~~~~~~~~s~~~Lk~----~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~ 396 (962)
T COG0610 323 FQSFGKVAFNDPKAESTSELKE----LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKL 396 (962)
T ss_pred HHHHHHhhhhcccccCHHHHHH----HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHH
Confidence 9998765444331222222222 2333456899999998865532 2345577899999999953 3344444
Q ss_pred hh-hcccceeEEecccCCCCCH
Q 000169 1145 LD-RYRCQRRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1145 Lk-~L~a~~RLLLTGTPLQNnL 1165 (1953)
++ .|....-+++||||+...-
T Consensus 397 ~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 397 LKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhccceEEEeeCCcccccc
Confidence 44 4555778999999986543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-07 Score=117.10 Aligned_cols=407 Identities=15% Similarity=0.226 Sum_probs=221.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+-|.--|. .|.|.=..||=|||+++.. .+||....| ..+-||+.+..|. .|...+.+|+
T Consensus 76 G~r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 76 GKRPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCCcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHh
Confidence 3344555888764432 3557779999999998643 344433222 2445555555443 4999999988
Q ss_pred CCCeEEEE-ec-chhhHhHHHHHHHhhccccEEEEeHHHH-----Hhh----hhcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYY-VG-AKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy-~G-s~deRk~l~~qei~~~~fdVVITTYEsL-----~kd----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+ +.|-+. .+ ....|+.. ...||+-+|..-| +.. ...+....+.|+||||++.+.=.
T Consensus 147 G-LsvG~i~~~~~~~~rr~a-------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID----- 213 (925)
T PRK12903 147 G-LSVGINKANMDPNLKREA-------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID----- 213 (925)
T ss_pred C-CceeeeCCCCChHHHHHh-------ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec-----
Confidence 4 333333 33 33333322 2457777775543 322 12223357889999999987411
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCC-----------------hHHHHhhhcCCcccCCCCCCCCh
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADD 1205 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S-----------------~k~F~e~F~kPf~k~g~~~~~e~ 1205 (1953)
.++.-|++||.+ ... .++|..++-+.+.+-.. .....+.|..+ +
T Consensus 214 ------EArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~--n--------- 274 (925)
T PRK12903 214 ------EAKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLK--N--------- 274 (925)
T ss_pred ------ccCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCC--c---------
Confidence 123345666643 222 24555444332211100 00111111100 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000169 1206 DWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (1953)
Q Consensus 1206 d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek 1277 (1953)
+........++.+...|+.. ++.|-+.-|-. +....+|. ..| .+..-+.+.+...-.+.+.....
T Consensus 275 --Ly~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~---dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~- 347 (925)
T PRK12903 275 --LYDIENSELVHRIQNALRAHKVMKEDVEYIVR---DGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK- 347 (925)
T ss_pred --ccChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce-
Confidence 00011112234444444443 33332222211 11122221 111 23334444444332222221110
Q ss_pred hhhhcC--hhhHHHHHHHH-------HHHHHHHHHhcCCCCCCCCCcccc-----chhhhhhcccHHHHHHHHHHHHHhc
Q 000169 1278 RRVQKN--PIYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRT 1343 (1953)
Q Consensus 1278 ~~l~kn--~~~~ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~dl-----s~d~Li~~SGKLelLdrIL~kLkat 1343 (1953)
.+..- ..| -+.|..| ...-..|.++.+.+.+..|..... ..........|+..+..-+.++...
T Consensus 348 -TlAsIT~Qnf-Fr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~ 425 (925)
T PRK12903 348 -TLATITYQNF-FRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK 425 (925)
T ss_pred -eeeeehHHHH-HHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc
Confidence 00000 000 0011111 112235667766665554433211 1112233457888888888888889
Q ss_pred CCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCC------
Q 000169 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD------ 1417 (1953)
Q Consensus 1344 GhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaAD------ 1417 (1953)
|..|||.|......+.|..+|...|+++..|+.... +.-..+|. +++ ..-.+.|+|..+|+|.|+.-..
T Consensus 426 gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG--~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 426 GQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAG--QKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCC--CCCeEEEecccccCCcCccCchhHHHcC
Confidence 999999999999999999999999999999988643 22333443 333 2335899999999999987544
Q ss_pred --eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1418 --TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1418 --tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
+||....+-|-..+.|..||++|.|.....+.|. ++++.+.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l--SLeD~L~r 544 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI--SLDDQLFR 544 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEE--ecchHHHH
Confidence 9999999999999999999999999998876553 44555543
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=126.24 Aligned_cols=246 Identities=16% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 992 QPSMLRAGTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 992 qPs~L~ggkLRPYQleGL~WLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.|. +..|-|-..|+++|-|.+..... +.|-+|.|.-|.||-.++..+|..-+ .+++.+...|-|-..|-..-
T Consensus 257 lP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNy-LkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 257 LPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENY-LKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred ccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhh-hcccceeEEEEeccccccch
Confidence 566 33468999999999999976542 33558999999999777666664433 24555455555566676666
Q ss_pred HHHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccc-cCc------cEEEcc
Q 000169 1066 KSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIIID 1129 (1953)
Q Consensus 1066 ~~Ef~Kwa-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~k-ikW------d~VIID 1129 (1953)
.+.+.... +.+.|..+..-+ -.++...+....+-.|+++||..|+-+. ..|.. +.| .+||+|
T Consensus 335 ERDL~DigA~~I~V~alnK~K--YakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFK--YAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhchhhcCCCCccceehhhcc--cccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 66666553 344433321110 0111111122344579999999997541 11111 123 589999
Q ss_pred cccccCC-------chhHHHHHhh----hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhh--hcCCccc
Q 000169 1130 EAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW--FSQPFQK 1196 (1953)
Q Consensus 1130 EAHrLKN-------~~SKlsraLk----~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~--F~kPf~k 1196 (1953)
|||+.|| ..++..+++. .++..+.+..|||-.. |-.++..+..-++|+....|-++ |...+++
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi~AvEk 488 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEK 488 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHHHHHHh
Confidence 9999998 3345555444 3466788889998532 33455556666776655443321 2233444
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHH
Q 000169 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263 (1953)
Q Consensus 1197 ~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I 1263 (1953)
.|....... .+...++...+-|-- .+-.-...+..++|+..-+.+|+..
T Consensus 489 RGvGAMEIV-------------AMDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 489 RGVGAMEIV-------------AMDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred cCCceeeee-------------ehhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 444332211 111122322222211 1223345677889999999999743
|
|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=117.22 Aligned_cols=206 Identities=19% Similarity=0.251 Sum_probs=117.1
Q ss_pred EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh----HHHHHHHHHHHHHHHHHhcCCCCCCCCCcc----
Q 000169 1245 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY----QAKVYKTLNNRCMELRKTCNHPLLNYPYFS---- 1316 (1953)
Q Consensus 1245 E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~----~ak~~~sL~nilmqLRKiCNHP~L~~p~l~---- 1316 (1953)
++.+.++|+..|+.+|+.+.......+...- ......... .......+.-.+.+|+.+|+||+|..+.+.
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l 82 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFC--ETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL 82 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHH--HSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHH--cccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccc
Confidence 5778899999999999987653221111000 000000000 001235666778899999999999655442
Q ss_pred --ccchhhhhhcccHHHHHHHHHHHH-----HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH--
Q 000169 1317 --DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI-- 1387 (1953)
Q Consensus 1317 --dls~d~Li~~SGKLelLdrIL~kL-----katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI-- 1387 (1953)
......+...||||.+|.+++..+ ...+.++||.++...++|+||.+|...++.|.|++|..-.++....-
T Consensus 83 l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~ 162 (297)
T PF11496_consen 83 LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKN 162 (297)
T ss_dssp -STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---
T ss_pred ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcc
Confidence 112456788999999999999999 66778999999999999999999999999999999976555443322
Q ss_pred ----------HHh-hcCCCCccEEEEeccccccc----cCCccCCeEEEcCCCCCchhHHhhhhcc-cccCCcceEEEEE
Q 000169 1388 ----------VDF-NSHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 ----------erF-Ns~ds~ifVfLLSTrAGGeG----LNLQaADtVIifDppWNP~~d~QAiGRA-hRIGQKKeV~Vyr 1451 (1953)
... ..+...+.|+|++++-.... ++-...|.||-||+.+++....-..=|. +|-+ +.|-|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~Piir 240 (297)
T PF11496_consen 163 GNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIR 240 (297)
T ss_dssp -------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEE
T ss_pred cccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEE
Confidence 011 11234567778877755442 3334579999999999988755444444 3433 7888999
Q ss_pred Eeh
Q 000169 1452 MEA 1454 (1953)
Q Consensus 1452 LvT 1454 (1953)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 876
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=121.82 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG---ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.-.|.||||....-+|-|+.++..+| |.++.++|+-++.+|..-|+.|...+-. |||+|+++.+|||++..-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 45789999999999999999999885 5688899999999999999999986666 99999999999999999999
Q ss_pred EEcCCCCCchhHHhhhhcccccC
Q 000169 1420 IIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1420 IifDppWNP~~d~QAiGRAhRIG 1442 (1953)
|+..+|-....|++||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998864
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-06 Score=112.99 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=96.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~Ef~KwaPsl 1076 (1953)
..+|-.+|++++..|.. +-..++|.-|-.|||++|=..|+- ...+ ..+++.-.|-..+.|. .++|+.-|.++
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAial-aq~h--~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIAL-AQKH--MTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHH-HHhh--ccceEecchhhhhccchHHHHHHhcccc
Confidence 45899999999977765 778899999999999998544432 2222 2367778897777664 57788777766
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCch-hHHHHH-hhhccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRE-SVLARD-LDRYRC 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~-SKlsra-Lk~L~a 1150 (1953)
. +..|.... ......+|+|-+.++.- .+.+. +...||+||.|++.+.. .-.|.. +..++.
T Consensus 368 g--LlTGDvqi----------nPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 368 G--LLTGDVQI----------NPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred c--eeecceee----------CCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeeccc
Confidence 5 44554322 23457899999988754 22233 46679999999996632 233433 334433
Q ss_pred c-eeEEecccC
Q 000169 1151 Q-RRLLLTGTP 1160 (1953)
Q Consensus 1151 ~-~RLLLTGTP 1160 (1953)
. ..++||||-
T Consensus 434 HV~~IlLSATV 444 (1248)
T KOG0947|consen 434 HVNFILLSATV 444 (1248)
T ss_pred cceEEEEeccC
Confidence 3 478999993
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=112.27 Aligned_cols=233 Identities=17% Similarity=0.225 Sum_probs=138.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 996 LRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 996 L~ggkLRPYQleGL~WLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
+..|.|-.-|+++|-+...... .+.|-+|.|.+|.||..++.++|.+.+- +++.+++.|-+...|...-.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHH
Confidence 3457899999999999997765 3556699999999999999999988764 45544555555667877766666
Q ss_pred HHHCCC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-------hccccc-Cc------cEEEccccccc
Q 000169 1070 HKWLPS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKV-DW------KYIIIDEAQRM 1134 (1953)
Q Consensus 1070 ~KwaPs-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-------s~L~ki-kW------d~VIIDEAHrL 1134 (1953)
...... +.+..+..-+.. .....+..|+++||..|+... ..|..+ .| .+||+||||++
T Consensus 112 ~DIG~~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHhCCCcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 654322 222222111100 112235689999999998762 222211 22 48999999999
Q ss_pred CCchh------HHHHHhhh----cccceeEEecccCCCCCHHHHHHHHhhhcccc------cCChHHHHhhhcCCcccCC
Q 000169 1135 KDRES------VLARDLDR----YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV------FDNRKAFHDWFSQPFQKEG 1198 (1953)
Q Consensus 1135 KN~~S------KlsraLk~----L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~i------F~S~k~F~e~F~kPf~k~g 1198 (1953)
||..+ +...++.. ++..+.+..|||...+- -+|..+..-++ |.+...|.+-+. +.|
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep----~NmaYm~RLGLWG~gtpf~~~~~f~~a~~----~gG 256 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP----RNMAYMSRLGLWGPGTPFPDFDDFLEAME----KGG 256 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC----ceeeeeeeccccCCCCCCCCHHHHHHHHH----hcC
Confidence 99654 44455443 45567899999986432 22222222233 344455544332 221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH
Q 000169 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262 (1953)
Q Consensus 1199 ~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~ 1262 (1953)
... ..++. ..-..+..+++|... +-.-...++.++|++.+..+|+.
T Consensus 257 v~a------------mE~vA-~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 257 VGA------------MEMVA-MDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred chH------------HHHHH-HHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 110 00000 011122334444332 33445678899999999999973
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-06 Score=115.70 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGi--kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
.+.+.|..+ ...+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+.. +|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 444444444 34667888888888889888888875422 132333233334578999999874433 788899999
Q ss_pred cccCCcc--CCeEEEcCCCC-Cchh-----------------------------HHhhhhcccccCCcceE
Q 000169 1409 RGLNLQS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1409 eGLNLQa--ADtVIifDppW-NP~~-----------------------------d~QAiGRAhRIGQKKeV 1447 (1953)
+|+|++. +..|||.-.|+ +|.. ..|++||.-|-.+.+-|
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 9999997 58999988887 4542 24778888887766554
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=114.18 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
..+||.|.+-...+......+.++||-.+||+|||+.+|+..+......+...++++.+.++ -+.|-.+|+.+
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 35799999999999999999999999999999999998887665554344445677777765 68888899888
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-06 Score=110.21 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-----CCCeE
Q 000169 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-----PSVSC 1078 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-----PslkV 1078 (1953)
|.+-+.++...+.++...|+-..||+|||+..+..+..... .....++||++|+. |..|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 77888888888888877888899999999998877654443 22346899999976 7788888776554 24555
Q ss_pred EEEecc
Q 000169 1079 IYYVGA 1084 (1953)
Q Consensus 1079 vvy~Gs 1084 (1953)
++..|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555543
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=112.91 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|-+-|..++.-+..........+|.--||+|||-..+.+|...+. . .+.+||+||.. ++.|-...|...|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 5778899999988876522344589999999999999999988775 2 25799999964 88898888988887 667
Q ss_pred EEEecc--hhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc--CCchhHHH--HHhh----hc
Q 000169 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVLA--RDLD----RY 1148 (1953)
Q Consensus 1079 vvy~Gs--~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL--KN~~SKls--raLk----~L 1148 (1953)
.+++.. +.+|...+. .+..+...|||.|...+.- .--+..+|||||=|.- |-.+..++ +.+. ..
T Consensus 274 ~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHH-HHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 777654 334433332 3556888999999987742 2235689999999974 33222111 1111 22
Q ss_pred ccceeEEecccC
Q 000169 1149 RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ~a~~RLLLTGTP 1160 (1953)
..--.++=||||
T Consensus 348 ~~~pvvLgSATP 359 (730)
T COG1198 348 ENAPVVLGSATP 359 (730)
T ss_pred hCCCEEEecCCC
Confidence 233478889999
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-05 Score=102.79 Aligned_cols=365 Identities=16% Similarity=0.208 Sum_probs=184.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+-|.--| ..|.|.=..||-|||+++. +.+++... ....+-||+++.-|. .|...+-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~-l~ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVAT-LPAYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHH-HHHHHHHh--cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 435566688886433 2356777999999999764 34444432 234678888887554 4999999988
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhccccEEEEeHH-----HHHhhh----hcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYE-----FIMYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs--~deRk~l~~qei~~~~fdVVITTYE-----sL~kd~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+ +.|-+..+. ...|+. .-..+|+-+|-. +|+... .......+.++||||++.+.=
T Consensus 145 G-Lsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI------ 210 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKK-------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI------ 210 (870)
T ss_pred C-CceeeeCCCCChHHHHH-------hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee------
Confidence 5 555444332 223322 234577777654 333221 112234688999999998741
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhh----hcccc-cC----------Ch--HHHHhhhcCCcccCCCCCCCCh
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADD 1205 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~--k~F~e~F~kPf~k~g~~~~~e~ 1205 (1953)
.. ++.-|++||-+-. ..++|...+- |..+. |. +. ..+.+.|.. +... . .
T Consensus 211 ---De--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~l--y-~--- 276 (870)
T CHL00122 211 ---DE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IEDL--Y-S--- 276 (870)
T ss_pred ---cc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Cccc--c-c---
Confidence 11 2334677775432 2345544332 22221 00 00 001111100 0000 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000169 1206 DWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (1953)
Q Consensus 1206 d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek 1277 (1953)
... ..++.+...|+.. ++.|-+.-+.. +....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 277 -----~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~t 346 (870)
T CHL00122 277 -----AND-PWIPYILNALKAKELFFKNVHYIVR---NNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETET 346 (870)
T ss_pred -----ccc-HHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCcee
Confidence 000 1122333333332 22222221111 11111111 112 234445555544332222211100
Q ss_pred h------hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccc----hhhh-hhcccHHHHHHHHHHHHHhcCCe
Q 000169 1278 R------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHR 1346 (1953)
Q Consensus 1278 ~------~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls----~d~L-i~~SGKLelLdrIL~kLkatGhK 1346 (1953)
. ..++...............-..|+++-+-+.+..|...... .+.+ .....|...+..-+..+...|..
T Consensus 347 lAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grP 426 (870)
T CHL00122 347 LASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRP 426 (870)
T ss_pred eeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 00000000000001111223456777666655444332111 1122 23345777766666777889999
Q ss_pred eEEeechhHHHHHHHHHHHHcCCeEEeecCCC-CHHHHHHHHHHhhcCCCCccEEEEeccccccccCC
Q 000169 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1347 VLIFSQft~~LDILed~L~~rGikylRLDGsT-s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
|||-|.....-+.|...|...|+++..|+... ..+.-..+|.+= +. .-.+-|+|..+|+|.|+
T Consensus 427 VLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~--~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 427 ILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GR--KGSITIATNMAGRGTDI 490 (870)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CC--CCcEEEeccccCCCcCe
Confidence 99999999999999999999999999999874 334445566553 22 23488999999999774
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-06 Score=109.05 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=79.9
Q ss_pred HhcCCeeEEeechhHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc--CC
Q 000169 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1417 (1953)
Q Consensus 1341 katGhKVLIFSQft~~LDILed~L~~rGik-ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--AD 1417 (1953)
...+.++|||+..-.+|..+.++|...... .+...|... +..+++.|...... .|++.+....+|+|++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 455669999999999999999999877763 455566654 44899999875443 68999999999999997 68
Q ss_pred eEEEcCCCCC-chh-----------------------------HHhhhhcccccCCcceEEEE
Q 000169 1418 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1418 tVIifDppWN-P~~-----------------------------d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
.|||.-.||= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 9999888874 332 34999999995555555444
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-06 Score=110.46 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccccccc
Q 000169 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (1953)
Q Consensus 1332 lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGL 1411 (1953)
.+...+..+...+.++|||+....+++.+.+.|....+.. ..-|... .|.+++++|+..+.. +|+.|....+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4444455555677899999988999998888887665544 4445332 356799999874444 789999999999
Q ss_pred CCc--cCCeEEEcCCCC
Q 000169 1412 NLQ--SADTVIIYDPDP 1426 (1953)
Q Consensus 1412 NLQ--aADtVIifDppW 1426 (1953)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 366678877663
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=113.42 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=107.9
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+++|-++|.+++.-+.. +.+.++|..||.|||+.+-..|.+-+. .+ .++.-..|.- |..|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~-~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALR-DG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHH-cC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 467999999999976665 888999999999999999877766553 22 2478888966 455556677666653
Q ss_pred C--eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCch--hHHHHHhhhcc
Q 000169 1076 V--SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (1953)
Q Consensus 1076 l--kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~ 1149 (1953)
+ .+-++.|.... ..+..++|.|-+.|+.- +....-.....||+||.|.|.... ..+=..+..+.
T Consensus 189 v~~~vGL~TGDv~I----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVSI----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecceee----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 3 33444453221 24557777777888653 121222356789999999997533 33334445555
Q ss_pred cc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000169 1150 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (1953)
Q Consensus 1150 a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k 1192 (1953)
.. +.++||||- ++...|.+|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 55 689999993 455788888864
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-05 Score=98.10 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=103.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..+..-+..+...|..|||-|.++..-++|...|..+|+++-.|+.... +.-..+|.+== . .-.+-|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG--~--~GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAG--Q--PGTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcC--C--CCcEEEec
Confidence 3457888888888888999999999999999999999999999999988877643 22334444332 2 22478999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
..+|+|.|+. .-=+||.-..+-|...+.|..||++|.|.......| +++|+.+++
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLmr 746 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLMR 746 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHHH
Confidence 9999999976 346899999999999999999999999999887654 345555543
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.6e-05 Score=97.61 Aligned_cols=373 Identities=16% Similarity=0.201 Sum_probs=187.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+.|.--| +.|.|.-..||-|||+++ .+.+|+....+ ..+-||+++.-|. .|...+.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 334455588876544 346688899999999976 44555543222 3577777877554 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhccccEEEEeHHHH-----Hhhh----hcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs--~deRk~l~~qei~~~~fdVVITTYEsL-----~kd~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
++.|-+..+. ...|+ .....||+.+|-..| +.+. .......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err-------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK-------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH-------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee-------
Confidence 5555554432 22222 234568888886554 3322 11233578999999999874
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhh----cCCcccCCCCCC---CChhhHHHHHH--
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF----SQPFQKEGPTHN---ADDDWLETEKK-- 1213 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F----~kPf~k~g~~~~---~e~d~l~eEek-- 1213 (1953)
+.. ++.-|++||.+- ...++|...+-+... +.+|. ...+........ .+......+..
T Consensus 219 --IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~-------L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~ 285 (939)
T PRK12902 219 --IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAA-------LQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLG 285 (939)
T ss_pred --ecc--CCCcccccCCCc--cchHHHHHHHHHHHH-------hhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhC
Confidence 111 223377788653 223444333222110 00000 000000000000 00000000000
Q ss_pred --------HHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHH-
Q 000169 1214 --------VIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1214 --------~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c------~MSa~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
....+.+...|+.. ++.|-+.-+-. +....+|.- +-..+..-+.+.+...-.+.+......
T Consensus 286 i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tl 362 (939)
T PRK12902 286 VSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTL 362 (939)
T ss_pred chhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 01122233333322 22222221111 111111110 111244445555544333322211100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+................-..|+++.+-+.+..|.... ...........|+..+..-+.++.+.|..|
T Consensus 363 AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPV 442 (939)
T PRK12902 363 ASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPV 442 (939)
T ss_pred eeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 0000000000000011111224577776666554443221 111122233578888887778888999999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCC-CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGs-Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ 1414 (1953)
||-|.....-+.|...|...|+++-.|+.. ...+.-..+|.+- +. .-.+-|+|..+|+|.|+.
T Consensus 443 LIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~--~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 443 LVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GR--KGAVTIATNMAGRGTDII 506 (939)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CC--CCcEEEeccCCCCCcCEe
Confidence 999999999999999999999999999986 3434455566653 22 224789999999997643
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-05 Score=101.53 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=102.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH-H-CCCCe
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK-W-LPSVS 1077 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K-w-aPslk 1077 (1953)
.-.+|.+-+.- ...+...+|..++-.|||....-.|...++ ....+-++.|+|+. ++.|-..++.. | ++.+.
T Consensus 512 Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 34578776543 344667888899999999988777776665 45667889999976 66666555543 3 23332
Q ss_pred EEEE-ecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccc--cCccEEEcccccccCCch-hHHHHHhhhccc
Q 000169 1078 CIYY-VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSK--VDWKYIIIDEAQRMKDRE-SVLARDLDRYRC 1150 (1953)
Q Consensus 1078 Vvvy-~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~k--ikWd~VIIDEAHrLKN~~-SKlsraLk~L~a 1150 (1953)
..+. .|.- .+ ...+..-...|+||-++.+-.-.-. -.+ -+..|||+||.|.+.|.. ..++..+-.+..
T Consensus 587 rg~sl~g~l-tq----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 587 RGVSLLGDL-TQ----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred cchhhHhhh-hH----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC
Confidence 2221 1211 10 0112234778999999877533111 111 157899999999998854 556665555544
Q ss_pred ceeEEecccCCCCCHHHHHHHHh
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
--.|+|+|| .+++..+.-+++
T Consensus 662 CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 662 CPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CCeeEEecc--cCCHHHHHHHHH
Confidence 457889999 477777777777
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=111.56 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=53.2
Q ss_pred ccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhhhc----ccceeEEecccCCCC--CHHHHHH
Q 000169 1099 LKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWS 1170 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L----~a~~RLLLTGTPLQN--nL~ELwS 1170 (1953)
....|+++|...+..|. ..+.--.+..|||||||++.. ++.-.-.+..| +..+..++|+.|-.. ....|-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 34579999999998874 334445788999999999964 33333344444 344689999999763 4455666
Q ss_pred HHhhhccc
Q 000169 1171 LLNLLLPE 1178 (1953)
Q Consensus 1171 LLnFLlP~ 1178 (1953)
++.-|.-.
T Consensus 85 vmk~L~i~ 92 (814)
T TIGR00596 85 KMRNLFLR 92 (814)
T ss_pred HHHHhCcC
Confidence 66655443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=105.40 Aligned_cols=107 Identities=26% Similarity=0.322 Sum_probs=84.5
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGik-ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI 1420 (1953)
..|+.|+.||.. -+-.+...+..+|.. +++|.|+.+++.|..--..||+++++|.| |++++|.|.||||. .+.||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 578889999863 233345556666665 99999999999999999999998888776 77889999999984 78999
Q ss_pred EcCCC---------CCchhHHhhhhcccccCCc---ceEEEEEE
Q 000169 1421 IYDPD---------PNPKNEEQAVARAHRIGQK---REVKVIYM 1452 (1953)
Q Consensus 1421 ifDpp---------WNP~~d~QAiGRAhRIGQK---KeV~VyrL 1452 (1953)
||+.- -...+..|--|||+|.|.+ ..|+.++.
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 98875 3456678999999999876 34555543
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00013 Score=96.16 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhc----CCCCccEEEEec
Q 000169 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNS----HDSDCFIFLLSI 1404 (1953)
Q Consensus 1330 LelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs----~ds~ifVfLLST 1404 (1953)
...+.+.|..+...+.++|||+.....++.+.+.|... ++. +.+.|. ..|..+++.|.. ++. .+|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 33455555555446667888888888888888888643 333 334554 357788877764 222 378888
Q ss_pred cccccccCCcc--CCeEEEcCCCC
Q 000169 1405 RAAGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1405 rAGGeGLNLQa--ADtVIifDppW 1426 (1953)
....+|||++. +.+|||.-.|+
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCC
Confidence 99999999986 78999988776
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-05 Score=101.93 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1344 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1344 GhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
..-+|||-.-...++.+.+.|.. ..+.++-|+|..+.++..++ |+......+-+++||.++.++|.+..+-+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998888888877777776 45778899999999887764 554333445589999999999999999888
Q ss_pred E--------EcCCCC----------CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 I--------ifDppW----------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
| .||+-- +-+...||-|||+|.+-. .+|+|.+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pG---icyRLys 385 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPG---ICYRLYS 385 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCc---eEEEecC
Confidence 7 343322 223455777877776643 4566644
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=102.62 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
+...+..|+..| ..|++|.|||......+++++++...+.+++.++|..+..+. +.|. ++.| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEE
Confidence 334455555554 579999999999999999999999999999999998776633 3343 4555 56667888
Q ss_pred cccCCcc--CCeEEEc--CCCCCchh--HHhhhhcccccCCcceEEEEEE
Q 000169 1409 RGLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1409 eGLNLQa--ADtVIif--DppWNP~~--d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.||++-. -|.|+.| .....|.. ..|.+||+..+. ++++.||.=
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 8999875 4666655 33344554 689999998888 557766653
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=107.46 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=107.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HH---------HHHHHHCCC--CeEEEEecch--
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WK---------SELHKWLPS--VSCIYYVGAK-- 1085 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~---------~Ef~KwaPs--lkVvvy~Gs~-- 1085 (1953)
++..+.++||+|||.+++.+|.+|.... .+..+|||||...+.. .. .-|...+++ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4667899999999999999999987643 4578999999754322 22 123333433 4455565432
Q ss_pred -hhHhH---HHHHHHhhc-----cccEEEEeHHHHHhhhh--c----c--cc--cCc-------cEEEcccccccCCchh
Q 000169 1086 -DQRSR---LFSQEVAAL-----KFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1139 (1953)
Q Consensus 1086 -deRk~---l~~qei~~~-----~fdVVITTYEsL~kd~s--~----L--~k--ikW-------d~VIIDEAHrLKN~~S 1139 (1953)
..|.. ......... ..+|+|+|.+.|.++.. . + .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 11111 111111222 57999999999876421 1 0 11 122 3799999999964 34
Q ss_pred HHHHHhhhcccceeEEecccCCC-------C--CHHHHHHHHhhhcccccCChHHHHhhhcCCcccC
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKE 1197 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQ-------N--nL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~ 1197 (1953)
+.+.++..+...+.|..|||--. | .-.++++++.-| +..+.|...+.+-+...
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V~ 279 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDIF 279 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEEe
Confidence 57788899999999999999533 1 112355555544 45788888877666543
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=95.98 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhc--CCeeEEeechhHHHHHHHHHHHH----c---CCeEEeecCCCCHHHHHHHHHHhhcCCCCccE
Q 000169 1329 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399 (1953)
Q Consensus 1329 KLelLdrIL~kLkat--GhKVLIFSQft~~LDILed~L~~----r---GikylRLDGsTs~eeRqeaIerFNs~ds~ifV 1399 (1953)
...++..++..+... ...+|||-.-...+..+.+.|.. . .+-+..+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 35799999887777777777653 2 2567789999998776654 5655566777
Q ss_pred EEEeccccccccCCccCCeEE--------EcCCCC----------CchhHHhhhhcccccC
Q 000169 1400 FLLSIRAAGRGLNLQSADTVI--------IYDPDP----------NPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1400 fLLSTrAGGeGLNLQaADtVI--------ifDppW----------NP~~d~QAiGRAhRIG 1442 (1953)
+|++|..+...|.+.++-+|| .||+-- +-..-.||.|||+|.-
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 999999999999999877775 355432 3445679999998864
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=99.19 Aligned_cols=141 Identities=22% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaPslk 1077 (1953)
.+|-|+|..++.-+ .++...++..-|-.|||+.|--.|+..+.. ..+++.-.|-..|+| =.+||..-|.++-
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 48999999988544 457778888889999999986666554432 236777778665655 4567766655432
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCchhH--HHHHhhhcc-c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYR-C 1150 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~SK--lsraLk~L~-a 1150 (1953)
.. .|.-. ...+...+|.|-+.++.- ...+..+.| ||+||.|+|+..... +-..+.-++ .
T Consensus 201 LM--TGDVT----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 LM--TGDVT----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ee--eccee----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 22 22211 023456788888887643 345555566 899999999864332 222333333 3
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
-+-++||||-
T Consensus 267 vr~VFLSATi 276 (1041)
T KOG0948|consen 267 VRFVFLSATI 276 (1041)
T ss_pred ceEEEEeccC
Confidence 3568899993
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00037 Score=88.79 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=71.9
Q ss_pred eeEEeechhHHHHHHHHHHHHc----CC----eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCC
Q 000169 1346 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (1953)
Q Consensus 1346 KVLIFSQft~~LDILed~L~~r----Gi----kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaAD 1417 (1953)
-+|||-.-.+..+.+.+.|... +- -++-++|+++.++..++ |.....+++-+++||..+.+.|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5788887777666666666544 21 25678999999886544 5554556788999999999999999988
Q ss_pred eEE--------EcCCCCC-------chhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1418 TVI--------IYDPDPN-------PKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1418 tVI--------ifDppWN-------P~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+|| .|++--- |..-.||.-|++|.|.+.+-.+|||.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 875 3444111 112335555566666666778888866
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.5e-05 Score=98.72 Aligned_cols=153 Identities=19% Similarity=0.136 Sum_probs=90.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--s 1075 (1953)
.|+++|.+++.-= ....+.|.|.+.+++.|||+++=.+++. ++. ..+.+|.|.|--.+.+ =..++.-+.- +
T Consensus 223 ~~fewq~ecls~~--~~~e~~nliys~Pts~gktlvaeilml~~~l~---~rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLP--RLLERKNLIYSLPTSAGKTLVAEILMLREVLC---RRRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcch--hhhcccceEEeCCCccchHHHHHHHHHHHHHH---HhhceeEecceeehhHHHHhhhhhhccccC
Confidence 5778888877422 2236778899999999999887554433 333 2235788888654444 3333444432 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccc----cCccEEEcccccccCCc--hhHHHHHhhhc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKDR--ESVLARDLDRY- 1148 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~k----ikWd~VIIDEAHrLKN~--~SKlsraLk~L- 1148 (1953)
+.+-.|.|.-.. ......-.|.|+|-+.-......|-. ....+|||||-|-+... +.-+-..|..+
T Consensus 298 ~~ve~y~g~~~p-------~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~ 370 (1008)
T KOG0950|consen 298 FPVEEYAGRFPP-------EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKIL 370 (1008)
T ss_pred CcchhhcccCCC-------CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHH
Confidence 555556653221 11223457999999876555433322 24578999999998542 22222222221
Q ss_pred ---ccc--eeEEecccCCCCC
Q 000169 1149 ---RCQ--RRLLLTGTPLQND 1164 (1953)
Q Consensus 1149 ---~a~--~RLLLTGTPLQNn 1164 (1953)
... ..+++|+|-.+|.
T Consensus 371 y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 371 YENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred HhccccceeEeeeecccCChH
Confidence 222 3799999975443
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-05 Score=82.65 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=69.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
-+|-.-+|.|||-.++--+.. +.-...+++||+.|+.++. +|+.+...+..+. +.-..-.+ ...+..
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~-------~~~g~~ 73 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR-------THFGSS 73 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS-----------SSS
T ss_pred eEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec-------cccCCC
Confidence 467778999999877653322 2223456899999999764 4555555455432 22221111 123556
Q ss_pred cEEEEeHHHHHhhh-hcccccCccEEEcccccccCCchhHHHHHh-hhcc---cceeEEecccC
Q 000169 1102 NVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYR---CQRRLLLTGTP 1160 (1953)
Q Consensus 1102 dVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~SKlsraL-k~L~---a~~RLLLTGTP 1160 (1953)
-|-++||.++.+.. ......+|++||+||||-. ++.+-..+.+ ..+. ....+++||||
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 78889998876542 2334468999999999985 4555433332 2331 13589999999
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=89.86 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999888889999999999999999998776543332222 13777888765 444545555544
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=89.86 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999888889999999999999999998776543332222 13777888765 444545555544
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0024 Score=85.68 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---------------------------
Q 000169 1002 RDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--------------------------- 1050 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--------------------------- 1050 (1953)
+-+|-++++.+..+.. .+.=|+--..||+|||+.=.-++..|......+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 4589999998887654 233356667899999998866665554322211
Q ss_pred CCeEEEechHHHH----HHHHHHH-----------HHCCCCe---EEEEecchhhHhH--HHH---HHHhhccccEEEEe
Q 000169 1051 GPHLIIVPNAVLV----NWKSELH-----------KWLPSVS---CIYYVGAKDQRSR--LFS---QEVAALKFNVLVTT 1107 (1953)
Q Consensus 1051 GP~LIVVP~SLL~----QW~~Ef~-----------KwaPslk---Vvvy~Gs~deRk~--l~~---qei~~~~fdVVITT 1107 (1953)
.-.-|++=.+.+. .+..... .|+.... ++.|.|.-++-.- .+. .....-...|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 1123444433222 2333211 1222222 4556664322110 000 01122345799999
Q ss_pred HHHHHhhhhc---------ccccCccEEEcccccccCCchh-HHHHHhh--hcccceeEEecccCCCCCHHHH
Q 000169 1108 YEFIMYDRSK---------LSKVDWKYIIIDEAQRMKDRES-VLARDLD--RYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1108 YEsL~kd~s~---------L~kikWd~VIIDEAHrLKN~~S-KlsraLk--~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
.+.++.-... +...--..|||||.|-+-.... .+.+.|. .....+.++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 9988754321 1223457899999998853332 2333333 2345678999999644433333
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.4e-05 Score=82.83 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=84.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+|-+.|.+++..++. ... .++..+.|+|||-+..+++..++. .....+++||++|+. .+.+-...+.++
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 377899999976664 444 788999999999888888877742 245667899999966 677777777661
Q ss_pred ------CCCCeEEEEecch---h-hHhHH---------H---------------------------------H-------
Q 000169 1073 ------LPSVSCIYYVGAK---D-QRSRL---------F---------------------------------S------- 1093 (1953)
Q Consensus 1073 ------aPslkVvvy~Gs~---d-eRk~l---------~---------------------------------~------- 1093 (1953)
.+...++.+.... . ..... . .
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 1233333332221 0 00000 0 0
Q ss_pred -------HHHhhccccEEEEeHHHHHhhhhccccc--CccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1094 -------QEVAALKFNVLVTTYEFIMYDRSKLSKV--DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1094 -------qei~~~~fdVVITTYEsL~kd~s~L~ki--kWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
.......++||++|...+. ...+... .|++||||||-.+.-.. ..-.| .....+++|-|=|.|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~--~~~~~~~~~~~d~vIvDEAsq~~e~~--~l~~l--~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAA--SPFLSNFKEKFDVVIVDEASQITEPE--ALIPL--SRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-HHH--HHHHH--TTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccch--hhHhhhhcccCCEEEEeCCCCcchHH--HHHHH--HHhCCEEEEECChhhc
Confidence 0011235789999987773 2344444 79999999998774222 11122 2233788888887664
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=93.62 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=102.3
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCC--eEEEEec
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSV--SCIYYVG 1083 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q--------W~~Ef-~KwaPsl--kVvvy~G 1083 (1953)
++...+|+=+-+|||+|||.+.+-+|..|....|. -+++||||.-.+.- -.+.| ..++.+. ..++|.
T Consensus 70 ~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~- 147 (985)
T COG3587 70 RIDDKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD- 147 (985)
T ss_pred cCCCcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-
Confidence 44556677788999999999999999888765443 48999999754321 22334 4444443 333332
Q ss_pred chhhHhHHHHHHHhhccccEEEEeHHHHHhh---hhc---------------------ccccCccEEEcccccccCCchh
Q 000169 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRES 1139 (1953)
Q Consensus 1084 s~deRk~l~~qei~~~~fdVVITTYEsL~kd---~s~---------------------L~kikWd~VIIDEAHrLKN~~S 1139 (1953)
....... ......+.|+|.+...+.++ ... |... --+|||||-|++... .
T Consensus 148 -~~~~~~~---~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~ 221 (985)
T COG3587 148 -EDIEKFK---FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-D 221 (985)
T ss_pred -hHHHHHh---hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-h
Confidence 2111111 22345678999998888765 111 1111 137999999999865 7
Q ss_pred HHHHHhhhcccceeEEecccCCCCCHHHHHH-HHhhhcccccCChHHHHhhhcCCcc
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWS-LLNLLLPEVFDNRKAFHDWFSQPFQ 1195 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQNnL~ELwS-LLnFLlP~iF~S~k~F~e~F~kPf~ 1195 (1953)
+.+.++..+.+...|=.+||= .+-|. ++. .+++.+.|.....+.+.
T Consensus 222 k~~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~ 268 (985)
T COG3587 222 KTYGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIR 268 (985)
T ss_pred HHHHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhhee
Confidence 889999999888877777873 22222 222 23556777776655443
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.023 Score=72.76 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=68.5
Q ss_pred CeeEEeechhHHHHHHHHHHH----Hc-----CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS 1415 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~----~r-----GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa 1415 (1953)
.-+|||-.-.+.++..++.|. .. .+-++-|+.+.+.+...++ |..--.+++-++|+|..+.+.|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 447777655554444444333 22 2447788999998877655 44323346678999999999999998
Q ss_pred CCeEEEcCCCC--------------------CchhHHhhhhcccccCCcceEEEEE
Q 000169 1416 ADTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1416 ADtVIifDppW--------------------NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.+|| ||-+ +-+.-.||-|||+|.|-.|--++|.
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 88886 4433 2344679999999998776555554
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=92.27 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=84.9
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhccccEEE
Q 000169 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (1953)
Q Consensus 1029 GLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~--deRk~l~~qei~~~~fdVVI 1105 (1953)
|+|||-..+.+|...+.. .+.+||+||.. ++.++...|...|+...+.+|+..- .+|...+. .+..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~-~~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL-AVLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-HHhCCCCcEEE
Confidence 999999999999887752 34699999975 8899999999999867788888743 34444443 34567789999
Q ss_pred EeHHHHHhhhhcccccCccEEEccccccc--CCchhHH--HHHhh----hcccceeEEecccC
Q 000169 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDLD----RYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1106 TTYEsL~kd~s~L~kikWd~VIIDEAHrL--KN~~SKl--sraLk----~L~a~~RLLLTGTP 1160 (1953)
.|...+. +.--+..+|||||=|.- |...... .+.+. .+..-..++-|+||
T Consensus 246 GtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 9997553 22236789999998864 3322211 11122 22233467779999
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0057 Score=80.87 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..+..-+......|..|||.+.....-+.+...|...|++...|+-.-. .|+.-+-.+- +..-.+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCcccccc
Confidence 3457888888888888999999999999999999999999999999988877664 4444443333 2222467899
Q ss_pred cccccccCCcc-CC----------eEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1405 RAAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1405 rAGGeGLNLQa-AD----------tVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
..+|+|-|+.- .+ +||=-...-+-..+.|--||++|.|-...
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 99999999874 32 56777777788888899999999994433
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=82.57 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC----CCCc--------------h
Q 000169 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP----DPNP--------------K 1429 (1953)
Q Consensus 1368 GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp----pWNP--------------~ 1429 (1953)
++.++-|...++.+-..++ |.....+.+-++++|..+.+.|.++..-+||=... -+|| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5566667777776655443 55556677889999999999999999888874221 1233 2
Q ss_pred hHHhhhhcccccCCcceEEEEEEeh
Q 000169 1430 NEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1430 ~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.-.||-|||+| +.+=..|++.|
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCC---CCCcceeeehh
Confidence 33455555555 55656677755
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00072 Score=86.86 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=83.6
Q ss_pred HHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---HhCCCCCeEEEechHHHH-----HHHHHHHHHCCCCeE-EEEec
Q 000169 1013 LSLYNNKLNGILADEMGLGKTVQVMALIAYLME---FKGNYGPHLIIVPNAVLV-----NWKSELHKWLPSVSC-IYYVG 1083 (1953)
Q Consensus 1013 lsL~~n~lnGILADEMGLGKTIQAIALIa~Lle---~kg~~GP~LIVVP~SLL~-----QW~~Ef~KwaPslkV-vvy~G 1083 (1953)
.+..+.+.-.|+|.|||+|||-|.=-|+...-. .....|-+=|--|..+.. .-..|+..+...+.. +-|.|
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDG 344 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecc
Confidence 345566777899999999999998665533210 011112222333765432 234455553223333 33445
Q ss_pred chhhHhHHHHHHHhhccccEEEEeHHHHHhhhh-cccccCccEEEcccccccCCchhH-----HHHHhh---hc------
Q 000169 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRESV-----LARDLD---RY------ 1148 (1953)
Q Consensus 1084 s~deRk~l~~qei~~~~fdVVITTYEsL~kd~s-~L~kikWd~VIIDEAHrLKN~~SK-----lsraLk---~L------ 1148 (1953)
+.. .+-.|.++|-+.|+++.. .|.-.++..|||||||.= +-++- +++.+. .+
T Consensus 345 ti~------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 345 TIG------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred ccC------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 432 345789999999998753 344458999999999963 22221 222221 11
Q ss_pred -ccceeEEecccCCCCCHHHHHHHHhh
Q 000169 1149 -RCQRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1149 -~a~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
+.-..|+||||---.++.|---||-.
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi 438 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPI 438 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCC
Confidence 13357899999755554443334433
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0003 Score=83.22 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccC--------CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh--
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA--------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT-- 1454 (1953)
...+.|+++. ..|+|+| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567899754 4466665 999999999962 24478999999999999999999999998765555544
Q ss_pred -hhhhhhhhhh
Q 000169 1455 -VVDKISSHQK 1464 (1953)
Q Consensus 1455 -VEEkI~s~q~ 1464 (1953)
.|.++...+.
T Consensus 129 ~gE~Rfas~va 139 (278)
T PF13871_consen 129 PGERRFASTVA 139 (278)
T ss_pred HHHHHHHHHHH
Confidence 4444444433
|
|
| >PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0002 Score=60.93 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000169 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (1953)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1953)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
|
QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00095 Score=78.41 Aligned_cols=149 Identities=20% Similarity=0.142 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl---k 1077 (1953)
+-..|...+.|+.. +...++.-+.|+|||..++++....+.. +....++|+-|.-.. .|...|.|+- +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 45678888887764 4467888999999999999988865532 334444444344222 2233333321 0
Q ss_pred EEEEecc-hhhHhHH-----HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1078 CIYYVGA-KDQRSRL-----FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1078 Vvvy~Gs-~deRk~l-----~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
...|... -+.-..+ ....+....-.|-|.+..+++.. . +.-++||||||+++.- ......+.++...
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-t----l~~~~vIvDEaqn~~~--~~~k~~ltR~g~~ 203 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-T----FENAVVILDEAQNVTA--AQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-c----ccCCEEEEechhcCCH--HHHHHHHhhcCCC
Confidence 0000000 0000000 00001112334666666666432 2 3458999999999853 5556667788888
Q ss_pred eeEEecccCCCCCH
Q 000169 1152 RRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL 1165 (1953)
.+++++|-|-|-++
T Consensus 204 sk~v~~GD~~QiD~ 217 (262)
T PRK10536 204 VTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEeCChhhccC
Confidence 99999999977663
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=69.65 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
+..+++-|+.|+--|. .|-|.=..||=|||+++. +.+++....+ .++=||+-+..|. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456667888875442 244888999999999985 4444443333 4677777777554 3888888877
Q ss_pred CCCeEEE-Eecch-hhHhHHHHHHHhhccccEEEEeHHHHHhh---------hhcccccCccEEEccccccc
Q 000169 1074 PSVSCIY-YVGAK-DQRSRLFSQEVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1074 PslkVvv-y~Gs~-deRk~l~~qei~~~~fdVVITTYEsL~kd---------~s~L~kikWd~VIIDEAHrL 1134 (1953)
+ +.+-+ +.+.. +.|+. ....+|+-+|-..+.-| ........++++||||++.+
T Consensus 146 G-lsv~~~~~~~~~~~r~~-------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERRE-------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHHHH-------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHHHH-------HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4 44444 33333 23322 22457999988776543 11112347899999999876
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=71.07 Aligned_cols=147 Identities=25% Similarity=0.267 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-----HHHHHCCC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-----ELHKWLPS 1075 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-----Ef~KwaPs 1075 (1953)
+-++|...++.|.. ....++.-..|+|||+.+++..+.++.. +...+++|+-|..-+..+.- .-+|..|-
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44689998887773 4457888999999999999998888764 67777777777653322110 00111111
Q ss_pred CeEEE-----EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1076 VSCIY-----YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvv-----y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+..+. +.+. .... .......|-+.+..+++-. .++..+||||||+++. ...+...|.++..
T Consensus 80 ~~p~~d~l~~~~~~-~~~~------~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t--~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 80 LRPIYDALEELFGK-EKLE------ELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLT--PEELKMILTRIGE 145 (205)
T ss_dssp THHHHHHHTTTS-T-TCHH------HHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHhCh-HhHH------HHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCC--HHHHHHHHcccCC
Confidence 00000 0000 0000 1112334555555444321 2356899999999984 3445556778888
Q ss_pred ceeEEecccCCCCCHH
Q 000169 1151 QRRLLLTGTPLQNDLK 1166 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ 1166 (1953)
..+++++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 8999999999887654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0071 Score=57.84 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000169 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (1953)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~ 870 (1953)
......|..|+.+.++|.+.+...........++|..||...+++..++.++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999988888777778899999999999999999999999999999974
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0079 Score=73.44 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=54.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
|+--..|+|||+.++.++..+.. .......+++|++..+.+... .|.+-. .....
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------------~~~~~ 60 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------------NPKLK 60 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc-----------------------ccchh
Confidence 56677999999999999888721 233456788888776655443 444322 00111
Q ss_pred cEEEEeHHHHHhhhh--cccccCccEEEcccccccCC
Q 000169 1102 NVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN 1136 (1953)
...+..+..++.... ......+++|||||||++..
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 61 KSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 222333333333222 23345799999999999975
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=73.84 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCC----eEEeecCCCCHHHHHHHHHHhhcCCCCc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGi----kylRLDGsTs~eeRqeaIerFNs~ds~i 1397 (1953)
.+.|+.-...|+..+...|-|+|-||..+.+++++-...+ .-+- .+..+.|+...++|.++-.+...++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 3456666677888888899999999999998877654433 2221 13346788899999998877664332
Q ss_pred cEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1398 fVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
.-+++|.|..+|||+-..|.||++..|.+..++.|..|||+|-...
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 3689999999999999999999999999999999999999998754
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.036 Score=62.69 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVv 1079 (1953)
+|-+-|.+++..++. ....-.+|.-..|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999998875 122235777889999998665544 4444333 68899999874432 122110
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc------ccCccEEEcccccccCCchhHHHHHhhhccc-ce
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS------KVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QR 1152 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~------kikWd~VIIDEAHrLKN~~SKlsraLk~L~a-~~ 1152 (1953)
.+-..|...+........ ....++||||||-.+-+ ..+...+..... ..
T Consensus 67 ----------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 67 ----------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGA 122 (196)
T ss_dssp ----------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-
T ss_pred ----------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCC
Confidence 011233333332211110 23568999999998843 334444444433 56
Q ss_pred eEEecccCCC
Q 000169 1153 RLLLTGTPLQ 1162 (1953)
Q Consensus 1153 RLLLTGTPLQ 1162 (1953)
+++|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 9999999865
|
|
| >smart00573 HSA domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=57.35 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000169 810 REKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (1953)
Q Consensus 810 r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~ 870 (1953)
..-.|..++.|+++|.+.+...........+.|..||.+.++++.|+.++++++||++|++
T Consensus 13 ~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 13 WDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3446899999999999987777667777889999999999999999999999999999963
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.71 Score=58.26 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=62.3
Q ss_pred CeeEEeechhHHHHHHHHHHHHc---------CCeEEeecCCCCHHHHHHHHHHh--hcCCCCccEEEEeccccccccCC
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~~r---------GikylRLDGsTs~eeRqeaIerF--Ns~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
.-+|||-.....++...+.+... .++++-|+ +.+...+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 35788876655554444444311 23455555 22333322211 11122335689999999999888
Q ss_pred ccCCeEEEcCCC------CCch-----------hHHhhhhcccccCCcceEEEEEEeh
Q 000169 1414 QSADTVIIYDPD------PNPK-----------NEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1414 QaADtVIifDpp------WNP~-----------~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.++-+|| ||- +||. .-.||.-|++|.|.+++=..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8776665 443 3443 3458888888889888877888765
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0088 Score=65.85 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred HHhcCCeeEEeechhHHHHHHHHHHHHcC----CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc--ccccccCC
Q 000169 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1413 (1953)
Q Consensus 1340 LkatGhKVLIFSQft~~LDILed~L~~rG----ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr--AGGeGLNL 1413 (1953)
+...+.++|||+..-..++.+.+++...+ +.+..- + ...+..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999988653 333322 2 3578899999997433 4788887 99999999
Q ss_pred cc--CCeEEEcCCCC-Cchh-----------------------------HHhhhhcccccCCcceEE
Q 000169 1414 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1414 Qa--ADtVIifDppW-NP~~-----------------------------d~QAiGRAhRIGQKKeV~ 1448 (1953)
.. +..||+.-.|+ +|.. ..|++||+.|-....-+.
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 96 88999999986 3321 238999999977654443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0084 Score=61.71 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechHH-HHHHHHHHHHHCCC-CeEEEEecchhhHhHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNAV-LVNWKSELHKWLPS-VSCIYYVGAKDQRSRLFS 1093 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~SL-L~QW~~Ef~KwaPs-lkVvvy~Gs~deRk~l~~ 1093 (1953)
+..+++.-+.|+|||..+-.++..+.... ....-+.|-+|... ...+..++...+.. ... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~---------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQ---------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cC----------
Confidence 34568889999999988877776654321 11112344445443 44555555443211 000 00
Q ss_pred HHHhhccccEEEEeHHHHHh-hhhcccccCccEEEcccccccCCchhHHHHHhhhc--ccceeEEecccC
Q 000169 1094 QEVAALKFNVLVTTYEFIMY-DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1160 (1953)
Q Consensus 1094 qei~~~~fdVVITTYEsL~k-d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--~a~~RLLLTGTP 1160 (1953)
+...+.. -...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 71 -------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 -------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111111 1122222333799999999983 24444555544 556689999999
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.003 Score=84.07 Aligned_cols=179 Identities=23% Similarity=0.312 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
.+.+||.....-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 4666666654333322222 26888999999 89998776665543 5566788999999999999999877632211
Q ss_pred EEEEec-chhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCc---cEEEcccccccCCch---------hH
Q 000169 1078 CIYYVG-AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SV 1140 (1953)
Q Consensus 1078 Vvvy~G-s~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikW---d~VIIDEAHrLKN~~---------SK 1140 (1953)
.++... ....... ............+++........ ...+....| +++++||+|.+.+.. ..
T Consensus 161 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 161 AVLDKEGLRYLLKQ-YDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred hhhhhhhhhhhhhh-hcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111 1100000 00000000000033333333322 223344456 899999999997642 22
Q ss_pred HHHHhhhccc--------ceeEEecccCCCCCHHHHHHHHhhhcccccCC
Q 000169 1141 LARDLDRYRC--------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (1953)
Q Consensus 1141 lsraLk~L~a--------~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (1953)
.+..+..... ...+++++||......+++....++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 2333332211 12347899998888777776666666655544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.062 Score=54.45 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+...+|..+.|+|||..+-.++..+. ....+++++........+.........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 55678999999999977666555443 122355555444433333322221110
Q ss_pred ccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC-chhHHHHHhhhcc------cceeEEecccCCC
Q 000169 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~------a~~RLLLTGTPLQ 1162 (1953)
...... .........+|||||++++.. ....+...+..+. ....+++|+++..
T Consensus 72 ---------~~~~~~--~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLF--ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHH--HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000111 111123567999999999832 2233444444442 4567778877644
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.054 Score=71.39 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
..|-+.|..+|.+++. .....|+-...|+|||.+++.++..+.. .+ .++||++|+. .+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 3688999999988764 2245688899999999999998888775 22 3899999987 46666666765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.085 Score=67.87 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
+|-.-|..+|...+. +.=.||-.+.|+|||++..+++..|.+. ..+|+||++|..+ +.|-...|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 677889999988875 4456899999999999998888888764 5689999999874 77777777764 3666
Q ss_pred EEEecchhhHh----------------------HHHHH-----------------------HHhhccccEEEEeHHHHHh
Q 000169 1079 IYYVGAKDQRS----------------------RLFSQ-----------------------EVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1079 vvy~Gs~deRk----------------------~l~~q-----------------------ei~~~~fdVVITTYEsL~k 1113 (1953)
+-......+.. .+... .......+||.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 55432221100 00000 00123456666664322
Q ss_pred hhhcccccCccEEEcccccccCCchhHHH
Q 000169 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1114 d~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
-...|.+++|..|+|||+-..--+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 23456778999999999987655555433
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.079 Score=69.25 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHHH-HHHHHHHHCCCCeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVN-WKSELHKWLPSVSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL~Q-W~~Ef~KwaPslkVv 1079 (1953)
+.|+.++...+. +.-.||.-..|+|||.++..++..+...... ...+++++|+.-... ..+-+......+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789988877775 4557899999999999998888877654322 246889999874433 333333322111100
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--------cccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--------~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
..... ...+-..|...+..... .-....+++||||||--+- ...+...+..+...
T Consensus 224 -----~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -----EALIA----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPN 286 (586)
T ss_pred -----hhhhh----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCC
Confidence 00000 00111222222221100 0112368999999998873 33455566677777
Q ss_pred eeEEecccCCCC
Q 000169 1152 RRLLLTGTPLQN 1163 (1953)
Q Consensus 1152 ~RLLLTGTPLQN 1163 (1953)
.||+|.|=|-|-
T Consensus 287 ~rlIlvGD~~QL 298 (586)
T TIGR01447 287 TKLILLGDKNQL 298 (586)
T ss_pred CEEEEECChhhC
Confidence 899999987553
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.065 Score=68.71 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
..|-+-|..++.+++. +..=.|+-.+.|+|||.+..-+|..++..+ .++||.+|+. .+.|-.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 3677899999998875 212347788999999999999999888632 5889999987 47776663
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.066 Score=70.81 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIAL 1039 (1953)
.+.|+-|+.-+..+++......+|+|-++||+|||+.-|.-
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 36799999999999999999999999999999999876553
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.064 Score=62.47 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCC---
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS--- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPs--- 1075 (1953)
..|||-|.+.+..|+.- ..+.|.++-.-||-|||-+.+=+++.++. .+ ..=+-+|||..++.+-..-+...+.+
T Consensus 22 iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLLN 98 (229)
T ss_pred ceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999873 45678899999999999887777766664 22 23467888999999877777665543
Q ss_pred CeEEEEecchhhH------hHHHHH-HHhhccccEEEEeHHHHHh
Q 000169 1076 VSCIYYVGAKDQR------SRLFSQ-EVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1076 lkVvvy~Gs~deR------k~l~~q-ei~~~~fdVVITTYEsL~k 1113 (1953)
-.++.+.-+.... ..+... ......-.|+|+|++.+..
T Consensus 99 r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 99 RRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 2222222111111 111100 1123455799999998753
|
There are two conserved sequence motifs: LLE and NMG. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.0015 Score=67.45 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+|+.++++|++++. +-..|+.|+|....|-..|+.. .||||+ .+-
T Consensus 20 ~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a 93 (107)
T cd05516 20 DGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIY-----EDS 93 (107)
T ss_pred CCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 799999999 89999999999999999999977 7789999999988888888775 899999 888
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|+.+++
T Consensus 94 ~~l~~~f~~~~~ 105 (107)
T cd05516 94 IVLQSVFKSARQ 105 (107)
T ss_pred HHHHHHHHHHHh
Confidence 888888887665
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.058 Score=67.72 Aligned_cols=66 Identities=18% Similarity=0.090 Sum_probs=45.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 993 Ps~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
|..|.-...+|-|..=..-+......+.+|+|-.+.|+|||+.-+++|....-..+....-||-|-
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 444444568888866554455556788899999999999999999987655444443334455553
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.1 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+.||.-+.|+|||..+-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999988777666543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=67.93 Aligned_cols=134 Identities=22% Similarity=0.202 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|.+-|.+++..+.. +.-.||.-..|+|||.++-+++..+.. .+...++++++|+........|..- ..
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LT- 391 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Cc-
Confidence 4689999999988753 446789999999999877666654433 3322578888898876665444210 00
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTG 1158 (1953)
.....+++. . ..+-. ...... .....++||||||+.+-. ..+...+..+....+|+|-|
T Consensus 392 ------a~Tih~lL~----~-~~~~~------~~~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 392 ------ASTIHRLLG----Y-GPDTF------RHNHLE--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVG 450 (720)
T ss_pred ------cccHHHHhh----c-cCCcc------chhhhh--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEEC
Confidence 000001110 0 00000 000000 124678999999999843 33455556667778999999
Q ss_pred cCCCC
Q 000169 1159 TPLQN 1163 (1953)
Q Consensus 1159 TPLQN 1163 (1953)
=|-|-
T Consensus 451 D~~QL 455 (720)
T TIGR01448 451 DTDQL 455 (720)
T ss_pred ccccc
Confidence 87654
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.17 Score=66.48 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCeE
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E-f~KwaPslkV 1078 (1953)
+-+.|+.++...+. +.-.||.-..|+|||.++..++..+.+... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976665 445789999999999998888887765322 23467888898754443333 2221111100
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
....+. .+..-..|...+.... ..-....+++|||||+.-+- ...+...+..+..
T Consensus 229 -----~~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQKK----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhhh----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 000000 0011112222222110 01122467999999999873 3455666677788
Q ss_pred ceeEEecccCCCC
Q 000169 1151 QRRLLLTGTPLQN 1163 (1953)
Q Consensus 1151 ~~RLLLTGTPLQN 1163 (1953)
..||+|-|-|-|-
T Consensus 292 ~~rlIlvGD~~QL 304 (615)
T PRK10875 292 HARVIFLGDRDQL 304 (615)
T ss_pred CCEEEEecchhhc
Confidence 8899999987554
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.71 Score=57.91 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=88.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEech--HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPN--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~--SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~ 1097 (1953)
..+|.-.+|+|||-++.-+..++..... ....+++|+=. ..-..|. +..|+-.+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 4578899999999988777766654321 23355555522 1222222 344432111111
Q ss_pred hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhcc--cceeEEecccCCCCCHHHHHHHH
Q 000169 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLL 1172 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~--a~~RLLLTGTPLQNnL~ELwSLL 1172 (1953)
.++.++..+......+ .++++||||++.+...... .+...+.... ....|.|+||--.+.+.+++.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1122333343322333 3689999999998753322 2333333332 24678899999888888888777
Q ss_pred hhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000169 1173 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1173 nFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
..+.+. .+|..-.+......|+...+.....
T Consensus 310 ~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 310 SPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred cCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 654332 1334445566677787766554443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.14 Score=57.59 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
.++.-+||.|||..++.++..+.. ...+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 367889999999888888776653 2346677755
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.11 Score=51.89 Aligned_cols=43 Identities=23% Similarity=0.081 Sum_probs=28.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
...+|.-++|+|||..+..++..+... ...++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccC
Confidence 456889999999998887777554321 1256777766544443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.29 Score=65.24 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=29.1
Q ss_pred cCccEEEcccccccCCch-hHHHHHhhhcccceeEEecccCC
Q 000169 1121 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
-+|+++||||+|.|.+.. ..+.+.|.......+++|+.|-.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 478999999999996432 34555555656667888887743
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.31 Score=66.15 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=58.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEEEecchhh-HhHHHHHHHhhc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQEVAAL 1099 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-aPslkVvvy~Gs~de-Rk~l~~qei~~~ 1099 (1953)
-||.-..|+|||..+..|...|....+.....+=.|+.. ..|..- ...+.++.+.+.... ...+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC------~~~~~g~~~~~dv~eidaas~~~Vd~iR------- 106 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC------VALAPGGPGSLDVTEIDAASHGGVDDAR------- 106 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH------HHHHcCCCCCCcEEEecccccCCHHHHH-------
Confidence 389999999999999888877764322111122334432 122111 123444444432110 01110
Q ss_pred cccEEEEeHHHHHhhh-hcccccCccEEEcccccccCCch-hHHHHHhhhcccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.++... ..-...+|+++||||+|+|-... ..+.+.|.......+++|+.|
T Consensus 107 ----------~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 107 ----------ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000000 00112478999999999995422 234555555555556666544
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.23 Score=63.49 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+.++. + -|+..+.|+|||..+..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444333332 2 389999999999988887776643
|
|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.0064 Score=62.92 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=61.4
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+||.++++|.+++- +-..|+.|+|....|-..|+.+ .||.|+ .+-
T Consensus 21 ~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~-----~~A 94 (106)
T cd05525 21 NGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIG-----RDV 94 (106)
T ss_pred CCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 99999999999999999999876 7789999999998888888776 788887 666
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.++-
T Consensus 95 ~~L~~~f~~ 103 (106)
T cd05525 95 CRLRKAYYQ 103 (106)
T ss_pred HHHHHHHHH
Confidence 666655543
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.6 Score=57.38 Aligned_cols=353 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh---hhcccccCccEEEcccccccCC------
Q 000169 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSKLSKVDWKYIIIDEAQRMKD------ 1136 (1953)
Q Consensus 1066 ~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd---~s~L~kikWd~VIIDEAHrLKN------ 1136 (1953)
.+|+.........+.|+|+ .......++|+..|+.+..+ ...=...+-.+|||||||++.+
T Consensus 299 iEdLv~lGk~~~~CPYY~S----------R~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYAS----------RRAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhh----------hhccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred -------chhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCC--CCCCCChhh
Q 000169 1137 -------RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG--PTHNADDDW 1207 (1953)
Q Consensus 1137 -------~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g--~~~~~e~d~ 1207 (1953)
.-+.....+..|..++..-|.+ +|+.-|--++.++ ..|...+...+...+ ..-...+-.
T Consensus 369 sa~Is~~ql~~a~~~i~~Y~~rf~~rl~~----~N~~~l~ql~~l~--------~~ll~fl~~~~~~~~~~~~~~~~dfl 436 (821)
T KOG1133|consen 369 SAEISFSQLCRAHKQIQQYFERFGKRLKA----KNLMYLKQLLSLL--------RRLLKFLDSNCELNGNGESLMRNDFL 436 (821)
T ss_pred hhheeHHHHHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHH--------HHHHHHHHhhhhhCCcccccchhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCC------------CceEEEEEeccCHHHHHHHHHHHHccCcccCchh
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP------------PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLP------------pKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ 1275 (1953)
+...-....+..|...+.--.+-|........+- ..++..-.-++++....-...+...-+.....+.
T Consensus 437 ~~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~LTn~~~dGr 516 (821)
T KOG1133|consen 437 FSSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGALTNNNEDGR 516 (821)
T ss_pred hhcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHHHhCCCCCCc
Q ss_pred HHhhhhcC---hhhHHHHHHHHHHHHHHHHHh-----------------------------cCC--------CCCCCCCc
Q 000169 1276 EKRRVQKN---PIYQAKVYKTLNNRCMELRKT-----------------------------CNH--------PLLNYPYF 1315 (1953)
Q Consensus 1276 ek~~l~kn---~~~~ak~~~sL~nilmqLRKi-----------------------------CNH--------P~L~~p~l 1315 (1953)
..-..... ....-.....+..++.+.|-+ |+| |++.....
T Consensus 517 i~~~k~~s~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gp 596 (821)
T KOG1133|consen 517 IFYSKQGSGTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGP 596 (821)
T ss_pred EEEeccCCceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCC
Q ss_pred cccchhhhhhcccHHHHHHHHHHHH----HhcCCeeEEeechhHHHHHHHHHHHHcCC-------eEEeecCCCCHHHHH
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIKL----QRTGHRVLLFSTMTKLLDILEEYLQWRQL-------VYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~kL----katGhKVLIFSQft~~LDILed~L~~rGi-------kylRLDGsTs~eeRq 1384 (1953)
.....++....-+-...|.++-..+ ..-..-|++|...-..+..+..++...|+ +-+......+.++--
T Consensus 597 sg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl 676 (821)
T KOG1133|consen 597 SGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVL 676 (821)
T ss_pred CCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHH
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCcc--CCeEEEcCCCCC--------------------ch------------h
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDPN--------------------PK------------N 1430 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--ADtVIifDppWN--------------------P~------------~ 1430 (1953)
.-...=-........|-+--.-.++|||+.+ +..||....|+- |. .
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkA 756 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKA 756 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Q ss_pred HHhhhhcccc
Q 000169 1431 EEQAVARAHR 1440 (1953)
Q Consensus 1431 d~QAiGRAhR 1440 (1953)
..|.||||.|
T Consensus 757 VNQsIGRAIR 766 (821)
T KOG1133|consen 757 VNQSIGRAIR 766 (821)
T ss_pred HHHHHHHHHh
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.062 Score=68.55 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=58.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHH----HHCCCCeEEEEecchhhHhHHHHHHHhhcc
Q 000169 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELH----KWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~----KwaPslkVvvy~Gs~deRk~l~~qei~~~~ 1100 (1953)
+.||+|||+++.+||++++. ..+..+|+.|- ++++..-...|. .-+---.++.|.+..-..+.+-.-..-...
T Consensus 4 matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 56999999999999999875 45667888774 556554333221 111000111222221111111000012345
Q ss_pred ccEEEEeHHHHHhhhh----------cccccCccEEEcccccccC
Q 000169 1101 FNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s----------~L~kikWd~VIIDEAHrLK 1135 (1953)
..|++||.+.+..+.. .|.. .--+++-||||++.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhln 125 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHLN 125 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhhh
Confidence 6799999988866521 1222 12356789999993
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.0066 Score=62.49 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcc
Q 000169 1727 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (1953)
Q Consensus 1727 ~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~ 1795 (1953)
.+++.++.+| .+|++..+|+|+.+++.|++++- +-..|+.|+|....+-..|+.+ +||+|+ .+
T Consensus 18 ~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 91 (103)
T cd05518 18 GSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVY-----ED 91 (103)
T ss_pred cCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 4788999999 99999999999999999999876 7789999999988888888775 799999 77
Q ss_pred ccccchhhhccc
Q 000169 1796 EQVLQPKIKRKR 1807 (1953)
Q Consensus 1796 ~~~~q~~~~~kr 1807 (1953)
-.+|+-.++.||
T Consensus 92 A~~le~~~~~~~ 103 (103)
T cd05518 92 ANILEKVLKEKR 103 (103)
T ss_pred HHHHHHHHHhcC
Confidence 778887777765
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.3 Score=66.17 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.5
Q ss_pred cCccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|.++||||+|+|.. ....+.+.|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4789999999999943 223455555555666777777553
|
|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.0069 Score=62.30 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+|+.++++|++++. +-..|+.|+|....|-..|+.+ .||+++ .+-
T Consensus 19 ~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~-----~~A 92 (103)
T cd05520 19 QGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIY-----KDA 92 (103)
T ss_pred CCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 589999999 99999999999999999999977 7789999999988888877765 788888 666
Q ss_pred cccchhhhcc
Q 000169 1797 QVLQPKIKRK 1806 (1953)
Q Consensus 1797 ~~~q~~~~~k 1806 (1953)
..|+-.|+.|
T Consensus 93 ~~L~~~f~~~ 102 (103)
T cd05520 93 EKLQKLMQAK 102 (103)
T ss_pred HHHHHHHHHh
Confidence 6777666655
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.57 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=31.7
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCCCHHHHHH
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
..|++|||||+|.|-.. ...+.+.+..+....+++|+.+....-+..|-+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 36899999999999532 233444555555566788887765443344433
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.23 Score=59.64 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~ 1063 (1953)
+.+.+|.-+.|+|||..|-++...+..... ..++++.|....++.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 445689999999999999887766553211 123444444344443
|
|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.0083 Score=61.79 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|++..+|+|+.++++|.+++. +-..|+.|+|....+-..|+.+ .||+|+ .+-
T Consensus 19 ~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~-----~~A 92 (105)
T cd05515 19 RGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIY-----KDA 92 (105)
T ss_pred CCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 89999999999999999999877 7789999999888877777765 788888 777
Q ss_pred cccchhhhccc
Q 000169 1797 QVLQPKIKRKR 1807 (1953)
Q Consensus 1797 ~~~q~~~~~kr 1807 (1953)
..|+-.+.+++
T Consensus 93 ~~L~~~~~~~~ 103 (105)
T cd05515 93 LTLQKVLLETK 103 (105)
T ss_pred HHHHHHHHHHH
Confidence 78887666654
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.22 Score=59.61 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEec
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVP 1058 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP 1058 (1953)
+.+.+|..+.|+|||..|.++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 4467889999999999987777666542111 235444443
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.44 Score=62.87 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
||..+.|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877753
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.24 Score=67.67 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=77.6
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCeEEEEecchhhHh
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-----~QW~~Ef~KwaPslkVvvy~Gs~deRk 1089 (1953)
+|+.+.+.+++...|+|||+.+=..+.. ....+.+.-|+|...+ ..|...|.+. .++.++-..|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5667778999999999999877433322 4456788999998754 3488888776 5666666666554332
Q ss_pred HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch
Q 000169 1090 RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (1953)
Q Consensus 1090 ~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~ 1138 (1953)
+ ....-+|+|+|++.+-... .--..++.|+||.|.+....
T Consensus 1230 k------l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 K------LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred H------HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 2 2346799999999875442 22256899999999987543
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.26 Score=60.65 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH---------------HHHH
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV---------------NWKS 1067 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~---------------QW~~ 1067 (1953)
-||.-++.-|+. ..-.=..|.-.-|+|||+-|+|.-.+--..++.+.+++|-=|.--+. -|..
T Consensus 231 ~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq 308 (436)
T COG1875 231 AEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQ 308 (436)
T ss_pred HHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHH
Confidence 378888877664 11112357778999999999887666544466666655554543222 2333
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
-|.. ++.++.-..... ..............|--.||= +-+ .+.-.+||||||+++-- ..+-..+.+
T Consensus 309 ~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp--heikTiltR 374 (436)
T COG1875 309 AIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP--HELKTILTR 374 (436)
T ss_pred HHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH--HHHHHHHHh
Confidence 2211 111111000000 111111122223333333331 111 23456899999999843 233334555
Q ss_pred cccceeEEecccCCCCC
Q 000169 1148 YRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNn 1164 (1953)
.-...++.|||-|.|-+
T Consensus 375 ~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 375 AGEGSKIVLTGDPAQID 391 (436)
T ss_pred ccCCCEEEEcCCHHHcC
Confidence 56667999999886543
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.38 Score=57.66 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1007 eGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.++......+. +.+|.-+.|+|||..+.++..++.
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455555444444 578999999999999988887765
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.35 Score=57.28 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
....|+. .+.|.+|..+.|+|||..+.++...+.. .+ .+++++. ...|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~-~g--~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ-AG--HRVLFAT----AAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH-CC--Cchhhhh----HHHHHHHHH
Confidence 3445664 3677899999999999999998877764 22 2444433 234555554
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.1 Score=50.72 Aligned_cols=43 Identities=30% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.+|.-+.|+|||..+.++..++.. . +..++.+....+..|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQA 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHh
Confidence 445689999999999999887766553 1 223455555555444
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.93 Score=61.16 Aligned_cols=147 Identities=21% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|-.-|+.++...+......+ |+.. .|+|||-+...+|..|.. ..+.+|+.+=++ .+.|-.-.+..+-- .
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~---~gkkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVA---LGKKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHH---cCCeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 466789999877765443332 5555 799999888888877765 234788888654 67887666665421 1
Q ss_pred EEEecchhhHhHHHHH---------------HHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1079 IYYVGAKDQRSRLFSQ---------------EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~q---------------ei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
++--|....-...... ........||.||---+- ...|....|||+|||||--+--+-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 1112322111111100 011234455555532221 345667789999999998764322
Q ss_pred HhhhcccceeEEecccCCC
Q 000169 1144 DLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQ 1162 (1953)
.|--+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2233344556777776644
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.2 Score=53.33 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
+-.-|...+.++..+...+.|.+|..++|+|||..+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666555444456778899999999999999888877764
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.55 Score=58.09 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|..++..+...+..+. .-||..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566777777776554 3578999999999999888887764
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.3 Score=58.76 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=26.6
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|+++||||+|+|... ...+.+.|.......+++|+.|-
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 47899999999999532 23445555555555677777553
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.07 E-value=2.2 Score=57.04 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCCCHHHH
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
++++|||||+|.|... ...+.+.|.......+++|+.|=...-+.-+
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 6889999999998531 1234444444445557777766444433333
|
|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.021 Score=58.82 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
++|.++.+| .+|++..+|+|++++++|++++. +-..|+.|+|-...|-..|+.. .||+|+ .+-
T Consensus 19 ~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~-----~~A 92 (103)
T cd05517 19 SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVY-----KDA 92 (103)
T ss_pred CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 899999999 99999999999999999999876 7788999999877777777664 788887 554
Q ss_pred cccch
Q 000169 1797 QVLQP 1801 (1953)
Q Consensus 1797 ~~~q~ 1801 (1953)
..|+=
T Consensus 93 ~~l~~ 97 (103)
T cd05517 93 NAIKK 97 (103)
T ss_pred HHHHH
Confidence 44443
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.7 Score=47.93 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCeEEE
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPslkVvv 1080 (1953)
|.+.+..+..++.++. + -|+..+.|+||+-.+..++..++....... .|-.. .....+.. -.|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcceEEE-
Confidence 5566666666665542 3 388899999999999999988875433322 11111 11222222 12333333
Q ss_pred EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc--c--ccCccEEEcccccccCC-chhHHHHHhhhcccceeEE
Q 000169 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL--S--KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1081 y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L--~--kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLL 1155 (1953)
......+ .+ ..+.++.-...+ . ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 74 -~~~~~~~-------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 -KPDKKKK-------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp -ETTTSSS-------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred -ecccccc-------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2111100 00 011111111111 1 13689999999999953 3446777777777777888
Q ss_pred ecccCCCC
Q 000169 1156 LTGTPLQN 1163 (1953)
Q Consensus 1156 LTGTPLQN 1163 (1953)
|+.+=...
T Consensus 137 L~t~~~~~ 144 (162)
T PF13177_consen 137 LITNNPSK 144 (162)
T ss_dssp EEES-GGG
T ss_pred EEECChHH
Confidence 87764333
|
... |
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
Probab=90.70 E-value=5.1 Score=43.98 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000169 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (1953)
Q Consensus 839 ~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v 916 (1953)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666654444444455666555544321 1 1 1222358899999999999998654
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=90.60 E-value=3.2 Score=52.81 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-h-HHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-N-AVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~-SLL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei 1096 (1953)
..+|+-.+|+|||-+++.++.++....+. .++++|.- . .... ...+..|+- ++.+.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~~---------------- 283 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGA--VEQLKTYAKIMGIPVEV---------------- 283 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHH--HHHHHHHHHHhCCceEc----------------
Confidence 44678899999999998887776511222 34555542 2 1100 122333321 111111
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhh--cccceeEEecccCCCCCHHHHHHH
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSL 1171 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~--L~a~~RLLLTGTPLQNnL~ELwSL 1171 (1953)
+.+...+......+. .+++||||-+-+...... .+...+.. ......|+|++|+-.+.+.+++..
T Consensus 284 --------~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 284 --------VYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred --------cCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 112222222222222 589999999876533222 22222221 233557899999988888998888
Q ss_pred Hhhhccc-c----------cCChHHHHhhhcCCcccCCCCC
Q 000169 1172 LNLLLPE-V----------FDNRKAFHDWFSQPFQKEGPTH 1201 (1953)
Q Consensus 1172 LnFLlP~-i----------F~S~k~F~e~F~kPf~k~g~~~ 1201 (1953)
+..+.+. + ++..-.+......|+...+...
T Consensus 354 f~~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 354 FSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred hCCCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCC
Confidence 8876552 1 2333334444556666554433
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.39 Score=62.73 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E-f~Kw---aP 1074 (1953)
...|||.+.++-|..-. -....+.-..-+|||...+.+|.|.+. ...+|+|+|.|+. +...|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999988776422 234567778899999998888888875 4457999999986 66677644 3332 34
Q ss_pred CCeEEEEe-cchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccC----CchhHHHH---Hhh
Q 000169 1075 SVSCIYYV-GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRESVLAR---DLD 1146 (1953)
Q Consensus 1075 slkVvvy~-Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLK----N~~SKlsr---aLk 1146 (1953)
.++-.+.. ...+....+....+ ..-.+.++... -...|.....++||+||...+- +....+.. -..
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~k~f--~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~ 165 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILYKRF--PGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTK 165 (557)
T ss_pred HHHHHhCchhhcccCCchhheec--CCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHh
Confidence 44422222 11111111111111 12234444432 2356777889999999999983 22333333 333
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHh
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
.|....++++..||.......++.++.
T Consensus 166 tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 166 TFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 455678999999998776556665544
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.3 Score=57.06 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Ll 1044 (1953)
-||..+.|+|||..+-+++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999988877766654
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.6 Score=47.48 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc--CCeEEEcCCCC
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--ADtVIifDppW 1426 (1953)
...+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344578899999863221 47788877999999996 78899988775
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.7 Score=57.63 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=25.8
Q ss_pred cCccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3689999999999843 222344555554455577777653
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=3.1 Score=56.73 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=35.6
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHh-hc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSL-YN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL-~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1045 (1953)
-.|..|. =|+-|+.-|...+.- .. .+. ++| |.-.+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4565553 478888887655543 32 222 333 8999999999999888877654
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.9 Score=51.15 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
.-.+...+.-++..++.+.|.+|.-..|+|||..++|+...+. .++ .+++++.=+.++.++...+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 3344555555555566788889999999999999999998888 332 35666665556666555443
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.032 Score=57.23 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+++.++.+| .+|+...+|+|+++++.|.+++. +-..|+.|+|....|-..|+.+
T Consensus 19 ~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05519 19 TGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHL 73 (103)
T ss_pred CCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 688999999 89999999999999999999987 7789999999988887777765
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.9 Score=56.85 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCeEEE
Q 000169 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPslkVvv 1080 (1953)
|...+..|...+..+ .+. |+..+.|+|||-.+..++..+....+..+-..-.|+. +.+|.. ......++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~------C~~i~~~~~~~~dvie 91 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES------CVALAPNGPGSIDVVE 91 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH------HHHhhcccCCCceEEE
Confidence 455555555544433 233 7999999999999988887665322221111223332 222321 112345555
Q ss_pred Eecchhh-HhHHHHHHHhhccccEEEEeHHHHHhhhhcc-cccCccEEEcccccccCCch-hHHHHHhhhcccceeEEec
Q 000169 1081 YVGAKDQ-RSRLFSQEVAALKFNVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLT 1157 (1953)
Q Consensus 1081 y~Gs~de-Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L-~kikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLT 1157 (1953)
+.+.... ...+. .++...... ...+++++||||+|.|.... ..+.+.|.......+++|.
T Consensus 92 idaas~~gvd~iR-----------------el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 92 LDAASHGGVDDTR-----------------ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred eccccccCHHHHH-----------------HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5442211 11110 011111111 12368899999999996432 2334444444455555554
Q ss_pred cc
Q 000169 1158 GT 1159 (1953)
Q Consensus 1158 GT 1159 (1953)
.|
T Consensus 155 tt 156 (584)
T PRK14952 155 TT 156 (584)
T ss_pred eC
Confidence 44
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=3 Score=54.53 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHH---HHCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELH---KWLP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~---KwaP 1074 (1953)
..|.|+|...+.+|.. .+. .++.-.=..|||..+.++++++.-..+ ...+++++|..-... -.+.+. ...|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 255556789999998876665543332 347788888432111 112222 2223
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hccc--c
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1151 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~a--~ 1151 (1953)
.+........ .+..+ .. .....|.+.|- +.........+++||||+|.+++.. .++.++. .+.. .
T Consensus 133 ~l~~~~i~~~--~~~~I---~l-~NGS~I~~lss-----~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NKGSI---EL-ENGSKIGAYAS-----SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--CccEE---Ee-CCCCEEEEEeC-----CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2210000000 00000 00 11222222221 1233455678899999999998743 3333332 2222 2
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4688888883
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.3 Score=48.19 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCccEEEEeccc--cccccCCcc--CCeEEEcCCCC
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLSTrA--GGeGLNLQa--ADtVIifDppW 1426 (1953)
+...++++|+........+|+++.. ..+|||++. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4478899998632211235666655 899999997 78999988885
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=2.8 Score=50.31 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=26.3
Q ss_pred CccEEEcccccccCCch--hHHHHHhhhcccceeEEecccCC
Q 000169 1122 DWKYIIIDEAQRMKDRE--SVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~--SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46799999999983222 23333455556667888888643
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=88.81 E-value=4.1 Score=52.06 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.0
Q ss_pred ccHHHHHH-HHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1327 CGKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1327 SGKLelLd-rIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
..++.... .+|+.+. ....++|||...---.-.|..+|+..++.|+.++--++..+-.++-..|..+ ...++|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEEE
Confidence 34555544 4788776 3446899998766666668899999999999999999999999999999865 45577777
Q ss_pred ccccc-cccCCccCCeEEEcCCCCCchhHHhhhhcccccCC
Q 000169 1404 IRAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (1953)
Q Consensus 1404 TrAGG-eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQ 1443 (1953)
-|+-= .=..+.++.+||+|.+|-+|.-|.-.+.-...-.+
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 65532 23456779999999999999999988866554443
|
; GO: 0005634 nucleus |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=88.73 E-value=3.3 Score=49.07 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=30.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
+.+|....|+|||..+.+++.++.. . ...++++. +..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~--g~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-R--GKSVLIIT----VADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEE----HHHHHHHHH
Confidence 4589999999999999999988875 2 23455553 344555554
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.4 Score=51.84 Aligned_cols=51 Identities=27% Similarity=0.236 Sum_probs=34.2
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 992 QPSMLRAGTLRDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 992 qPs~L~ggkLRPYQleGL~WLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.|..+. =|+.|++.|...+.- ... ..+.+|.-+.|+|||..+-.++..+.+
T Consensus 13 ~p~~l~---gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 13 VPDRIV---HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCC---CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344443 377888776555443 222 245688999999999988888777654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.84 Score=56.79 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCC-------CCeEEEechHHHHHHHHHHHHHCC
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNY-------GPHLIIVPNAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~-------GP~LIVVP~SLL~QW~~Ef~KwaP 1074 (1953)
|..+...+...+..+. .-|+.-+.|+|||..+.++..+++-..... ...|.+|+..-...|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 5566666666555432 247899999999999999999988533211 12344555432223321 11136
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhcc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYR 1149 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~ 1149 (1953)
++.++.-...... .+. .-.| +.+.++.-...+ ..-.|.+|||||+|+|-. ....+.+.+....
T Consensus 102 Dl~~i~~~~~~~~-~~~--------~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 102 GLLTLERSWNEKG-KRL--------RTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CeEEEeccccccc-ccc--------cccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 6655532110000 000 0001 223332221111 223789999999999842 2224555555544
Q ss_pred cceeE-EecccC
Q 000169 1150 CQRRL-LLTGTP 1160 (1953)
Q Consensus 1150 a~~RL-LLTGTP 1160 (1953)
....+ ++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 44444 444444
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.037 Score=57.85 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=65.2
Q ss_pred CCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcc
Q 000169 1727 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (1953)
Q Consensus 1727 ~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~ 1795 (1953)
.++|.+|.+| .+|+++ +.++.++++|.++++ +-..|+.|+|.-..|...|+-. +||-|. +|
T Consensus 21 ~~Gr~~s~~f~~LP~~~--~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy-----~d 92 (110)
T cd05526 21 EEGRCYSDSLAELPELA--VDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIY-----ED 92 (110)
T ss_pred CCCCCchHHHHHCCCcc--cCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHH-----HH
Confidence 3899999999 899844 566789999999987 7789999999999888877654 889888 99
Q ss_pred ccccchhhhcccccc
Q 000169 1796 EQVLQPKIKRKRSIR 1810 (1953)
Q Consensus 1796 ~~~~q~~~~~krs~~ 1810 (1953)
..+||-.++++|...
T Consensus 93 A~eLq~~f~~~rd~~ 107 (110)
T cd05526 93 AVELQQFFIKIRDEL 107 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.044 Score=57.39 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|++..+|+|+.++++|++++. +-.+|+.|+|....|-..|+.. .||.+| .+-
T Consensus 21 ~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~-----~~A 94 (113)
T cd05524 21 DGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEH-----KDA 94 (113)
T ss_pred CCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 889999999 99999999999999999999876 7789999999988887777665 677777 566
Q ss_pred cccchhhhccc
Q 000169 1797 QVLQPKIKRKR 1807 (1953)
Q Consensus 1797 ~~~q~~~~~kr 1807 (1953)
..|+-.|...+
T Consensus 95 ~~L~~~f~~~~ 105 (113)
T cd05524 95 CKLWELFLSAR 105 (113)
T ss_pred HHHHHHHHHHH
Confidence 66665555433
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.6 Score=53.68 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.++|+|......++.. ..-.+ -|+..+.|+|||..+..+...++-
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3688999888888765 22223 368899999999999999888774
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.4 Score=51.39 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000169 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (1953)
+.+..++..+......+. ..+|.-+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666655444433 367899999999977765543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=2.6 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
.+.+|.-+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999987777666554
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=3.2 Score=53.95 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+. +. |+.-+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544444332 23 89999999999999888777654
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=9.3 Score=48.60 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=83.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec--h--HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP--N--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP--~--SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei 1096 (1953)
..+|+-.+|+|||..+..+...+.. . ...+++|.- - ..+.||..-... .
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-~--GkkVglI~aDt~RiaAvEQLk~yae~----l-------------------- 295 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-K--KKTVGFITTDHSRIGTVQQLQDYVKT----I-------------------- 295 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEEecCCcchHHHHHHHHHhhh----c--------------------
Confidence 3468889999999988887776653 2 234555553 1 245566532211 1
Q ss_pred hhccccEE-EEeHHHHHhhhhcccc-cCccEEEcccccccCCchhH---HHHHhhhcccc-eeEEecccCCCCCHHHHHH
Q 000169 1097 AALKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESV---LARDLDRYRCQ-RRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1097 ~~~~fdVV-ITTYEsL~kd~s~L~k-ikWd~VIIDEAHrLKN~~SK---lsraLk~L~a~-~RLLLTGTPLQNnL~ELwS 1170 (1953)
++.++ +.+...+......+.. .++++||||-+=+.-+.... +.+.+...... ..|.|++|--.+.+.++..
T Consensus 296 ---gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 296 ---GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ---CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 12222 2233334333333332 36899999988765433222 22222222222 3456788876677777776
Q ss_pred HHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCCC
Q 000169 1171 LLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNAD 1204 (1953)
Q Consensus 1171 LLnFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~e 1204 (1953)
.|+.+... .+|..-.+...+..|+...+...+..
T Consensus 373 ~F~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~VP 417 (436)
T PRK11889 373 NFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 417 (436)
T ss_pred HhcCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCCC
Confidence 66654332 13444455666777877665544433
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.9 Score=54.57 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=26.1
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.|.++||||+|+|... ...+.+.|.......+++|++|
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 6899999999999532 2345555555555567777765
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=3.4 Score=54.92 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+..+. .-||..+.|+|||..+.+++..+..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4444555555444443 3489999999999999888887764
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.6 Score=49.78 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=66.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhcc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~--deRk~l~~qei~~~~ 1100 (1953)
+|+-.+|.|||-++.-+.+++... ..++.+|+--.--.--.+.++.|+--+.+-++.-.. +..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 678899999999998888887753 345555553211111122333333222222222110 010
Q ss_pred ccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhc-ccceeEEecccCCCCCHHHHHHHHhhh
Q 000169 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L-~a~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (1953)
+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 70 --------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 --------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp --------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 1111122334445689999999877644322 222222222 344678888887666666555555544
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=2.5 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+..+ .+. ||.-+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455555555544433 234 7999999999988888776664
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=87.01 E-value=3.9 Score=50.50 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
..+.+...++.++..... .+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 466666677765553322 4566789999999999999998888875
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=86.94 E-value=4 Score=55.38 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|-+-|..++..++. .+.-.+|....|+|||.+.-+++..+ ... ...+++++|+.....-..+- + ++..
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~-~~~--g~~V~~~ApTg~Aa~~L~~~---~-g~~a 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAW-EAA--GYRVIGAALSGKAAEGLQAE---S-GIES 420 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHH-HhC--CCeEEEEeCcHHHHHHHHhc---c-CCce
Confidence 4689999999987764 12346888999999998776655443 322 34688888987544322211 0 0000
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh--hhhcccccCccEEEcccccccCCchhHHHHHhhh-cccceeEE
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLL 1155 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k--d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~a~~RLL 1155 (1953)
.|...+.. ..........++|||||+..+-. ..+...+.. .....+|+
T Consensus 421 ---------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 421 ---------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAGAKVV 471 (744)
T ss_pred ---------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEE
Confidence 01111100 00011123679999999998853 223334432 24567899
Q ss_pred ecccCCC
Q 000169 1156 LTGTPLQ 1162 (1953)
Q Consensus 1156 LTGTPLQ 1162 (1953)
|.|=|-|
T Consensus 472 LVGD~~Q 478 (744)
T TIGR02768 472 LVGDPEQ 478 (744)
T ss_pred EECChHH
Confidence 9996543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.92 E-value=2.7 Score=51.68 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=80.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl 1076 (1953)
.++|+|......+...+..+. + -|+..+.|+||+..+.+++..++-....... .|+.. +|.. ..-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~c---~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRTR---QLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchHH---HHHh--cCCCCCE
Confidence 589999999998888765443 2 4788999999999999998888753211111 12211 1111 1112555
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc----ccCccEEEcccccccCC-chhHHHHHhhhcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~----kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~ 1151 (1953)
.++...-.....+ .. .-...+.++.-...+. .-.++++|||+|++|.. ....+.+.|..-...
T Consensus 76 ~~i~~~p~~~~~k-----------~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 76 QLVSFIPNRTGDK-----------LR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG 143 (319)
T ss_pred EEEecCCCccccc-----------cc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC
Confidence 5442110000000 00 0011222221111111 12689999999999953 333566666666666
Q ss_pred eeEEecccCCCCCHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwS 1170 (1953)
..++|++.-...-+.-|.|
T Consensus 144 ~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 144 RYLWLISAQPARLPATIRS 162 (319)
T ss_pred CeEEEEECChhhCchHHHh
Confidence 6677776543333333333
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.3 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+..+.|+|||..+..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 468999999999999888877653
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.8 Score=44.14 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=25.8
Q ss_pred CccEEEcccccccCCchhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.-.+|||||+|++.+....+-..+... ....+++||.-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999976433333333322 45689999975
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=86.75 E-value=2 Score=42.17 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~Q 1064 (1953)
.++--..|+|||-+++..+.+++.. .....++|||+|+....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4568899999999999999998853 222568999999875444
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.68 E-value=3.1 Score=54.46 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444443332 2 478999999999999888877653
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.65 E-value=7.5 Score=46.38 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=25.5
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+.+|||||+|.+... ...+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4679999999999542 23444455555555677777653
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=86.63 E-value=0.066 Score=55.27 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=48.8
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
..++ +++.++.+| .+|++..+++|+.++++|.+++. +-..|+.|+|....|-..|+.+
T Consensus 16 ~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~l 74 (104)
T cd05522 16 ERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNL 74 (104)
T ss_pred HhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 3344 679999999 99999999999999999999987 7889999999877766656554
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=3.6 Score=53.57 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=27.3
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
.+|+++||||+|.|-.. ...+.+.|.......+++|+.|-...
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 47899999999999532 22344555555555666666554333
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.9 Score=51.39 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=25.2
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
+++++||||+|.+... -..+.+.|.......+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6889999999999542 22344444444455567776653
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.23 E-value=6.1 Score=47.35 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
+.+.+|.-++|+|||..+.+++.++... ..+++++.-..++..+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHH
Confidence 3457899999999999999998888753 235555553444444433
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.7 Score=54.43 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+ ..-||....|+|||..+..+...|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344444444444333 23588999999999999888877754
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=5.6 Score=52.54 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=57.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH-hHHHHHHHhhccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR-SRLFSQEVAALKF 1101 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deR-k~l~~qei~~~~f 1101 (1953)
|+.-+-|+|||..+..+..++....+..+...-.|+. +.+|.. .....++.+.|..... ..+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~------c~~i~~-g~~~d~~eid~~s~~~v~~i---------- 104 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP------CVEITE-GRSVDVFEIDGASNTGVDDI---------- 104 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH------HHHHhc-CCCCCeeeeeccCccCHHHH----------
Confidence 7899999999999988887765422211111112322 223322 1233444444432110 000
Q ss_pred cEEEEeHHHHHhhhhcc-cccCccEEEcccccccCC-chhHHHHHhhhcccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L-~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
..++...... ...+|+++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 105 -------r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 105 -------RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0011111111 124689999999999853 22345555555555556666555
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.7 Score=55.77 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+..+. +. |+...-|+|||-.+..+...+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555555544432 33 88999999999998888777653
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=85.72 E-value=4.3 Score=52.72 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEE
Q 000169 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (1953)
Q Consensus 1324 i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLL 1402 (1953)
...|||.++...++......|.+|||.+.....+..+.+.|+.+ |..+..++|.++..+|.+...+...++.. |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 45689999988888888888999999999999888888877754 77889999999999998888777654444 566
Q ss_pred eccccccccCCccCCeEEEcC
Q 000169 1403 SIRAAGRGLNLQSADTVIIYD 1423 (1953)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD 1423 (1953)
.|+.+-. +-+...+.||+-+
T Consensus 82 GTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CChHHHc-CcccCCCEEEEEC
Confidence 6665322 3455666777654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=85.55 E-value=7 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+|..+.|+|||-.+.++...+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888887766654
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.48 E-value=0.92 Score=53.18 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=58.4
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000169 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei 1096 (1953)
.|-.|-|++...|+|||-.+.+|...|+-. ..++-+.... ..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~-----------------~~ke~vLELN----------ASd---------- 88 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD-----------------SYKEAVLELN----------ASD---------- 88 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh-----------------hhhhHhhhcc----------Ccc----------
Confidence 345577999999999998888887776521 0111111110 011
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh-HHHHHhhhcccceeEEe
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLL 1156 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S-KlsraLk~L~a~~RLLL 1156 (1953)
..+.|||-.+...|...+-.|...+.+.||+|||+-|-...- .+.+.+.-|....|++|
T Consensus 89 -eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 89 -ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred -ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 122344444444555555667778899999999999864332 23334444444444443
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=85.37 E-value=3.6 Score=50.16 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=28.6
Q ss_pred hhcccccCccEEEcccccccCC-chhHHHH---Hhhhcccc--eeEEecccC
Q 000169 1115 RSKLSKVDWKYIIIDEAQRMKD-RESVLAR---DLDRYRCQ--RRLLLTGTP 1160 (1953)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN-~~SKlsr---aLk~L~a~--~RLLLTGTP 1160 (1953)
...|..++..++||||.|++.. ...+... +|+.+... --+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333333 33333222 245667776
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=85.17 E-value=0.73 Score=51.00 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.0
Q ss_pred hccccEEEEeHHHHHhhhh--cc--cccCccEEEcccccccCC
Q 000169 1098 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s--~L--~kikWd~VIIDEAHrLKN 1136 (1953)
....+|||++|.++..... .+ ...+-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4567999999999986531 22 223557899999999854
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=6.6 Score=51.93 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~ln---GILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+.+|...+..+.- -||.-+.|+|||..+..++.++.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655554432 28999999999999988877664
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=4.8 Score=52.63 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCC-C-Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK-L-NG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~-l-nG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+..+ . +. |+..+.|+|||..+-.+...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444443332 2 33 7999999999988887776664
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.70 E-value=3.3 Score=49.32 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=60.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
-||+.+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588999999999999999888774322221111111 112222222223322221111110 0
Q ss_pred cEEEEeHHHHHhhhhccc-ccCccEEEcccccccCC-chhHHHHHhhhcccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~-kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
+|++.-+..+........ ...|.+||||||+.|-- ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111111111111111111 35799999999999943 33455566666677777777764
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=6.8 Score=46.90 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456789999999999999988887765
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.26 E-value=7.8 Score=49.47 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=54.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..+.|+|||..+-++...+....+ ...++.|....++..+...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~----------------------------- 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNN----------------------------- 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcC-----------------------------
Confidence 578999999999998888877765321 22344444333443333333210
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhcc-cceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L~-a~~RLLLTGT 1159 (1953)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+. ....+++|++
T Consensus 201 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 -----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 111111 1122 47799999999986533 23444444432 3345777765
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.24 E-value=5.2 Score=52.08 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+ ...||..+.|+|||..+-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 35689999999999998887776653
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=6 Score=52.81 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHH-----HH
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELH-----KW 1072 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~-----Kw 1072 (1953)
|+=..-|+.+...|.++...++++ =|.|||..+..++.++....+ -.++|.+|.. +... -..-+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344556788888899888888876 799999988877777664332 4688888843 2222 112222 67
Q ss_pred CCCCe-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1073 LPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1073 aPslk-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+|... ++...|+.....-..+.....+...+.+.+. ..+......+++||||||+-+.. ..+...+-.+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 77653 2323332211000000000001112222221 12334445789999999999965 22332222232 3
Q ss_pred ceeEEecccCC
Q 000169 1151 QRRLLLTGTPL 1161 (1953)
Q Consensus 1151 ~~RLLLTGTPL 1161 (1953)
...+++.-||.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 45666666764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.6 Score=43.12 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=23.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
||.-+.|+|||..+-.++.++ .-+++.|....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccccc
Confidence 677889999998876666543 124555555555533
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.87 E-value=6.8 Score=49.30 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+.++ .+ -|+..+.|+|||..+.++..++.-
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444444444433 12 478999999999999888777653
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.82 E-value=4.1 Score=50.03 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEE
Q 000169 1004 YQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080 (1953)
Q Consensus 1004 YQleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvv 1080 (1953)
.|...+..+...+..+ .+. |+..+-|+|||..+..++..++...+..+...=.|+ ....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEec
Confidence 4555566665555433 234 899999999999998888777643211121111221 11222223346665554
Q ss_pred EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhcccceeEE
Q 000169 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1081 y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLL 1155 (1953)
..|..- +.+.++.-...+ ..-.++++||||+|+|.. ....+.+.|..-.....++
T Consensus 85 ~~~~~i--------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQSI--------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cccccC--------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 443211 112221111111 123689999999999953 2334555555555566777
Q ss_pred eccc
Q 000169 1156 LTGT 1159 (1953)
Q Consensus 1156 LTGT 1159 (1953)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=8.4 Score=49.50 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..++|+|||..+-++..++..... ...++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 468999999999888777766654322 234555554444444443332100
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhcc-cceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L~-a~~RLLLTGT 1159 (1953)
..++.+ ...+ ...+++||||.|.+.+.. ..++..+..+. ....++||+.
T Consensus 195 ----~~~~~~---~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ----KEIEQF---KNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----hHHHHH---HHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 001111 1112 256899999999987532 23444444443 3346788843
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.70 E-value=4.3 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+..+.|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 478999999999999888776654
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=83.69 E-value=6 Score=45.39 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
....+|..+.|+|||..+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999988877665544
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=83.69 E-value=7.8 Score=40.67 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
+|.-+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 57778999999999888776654 34567776643
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=6.2 Score=53.10 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
..+||..+...++......|.+|||.+.....+..+.+.|... |..+..++|+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999887777777777999999999999888877777653 78899999999999998888888765544 5667
Q ss_pred ccccccccCCccCCeEEEcCC
Q 000169 1404 IRAAGRGLNLQSADTVIIYDP 1424 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDp 1424 (1953)
|+.+- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76432 245666777776553
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=83.17 E-value=8.5 Score=48.36 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=54.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..+.|+|||..+.++..++.+.. ....++.|....++..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 37999999999999988887776532 12344444433333222222211 0
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhc-ccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
+.+.+.. .+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 -----~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 -----KMEEFKE---KYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred -----CHHHHHH---HHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 1111211 111 35799999999986542 2344444443 33456777775
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.98 E-value=5.9 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+.-+.|+|||..+.+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 489999999999999888877764
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=82.84 E-value=2.1 Score=50.20 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHH-HHHHHHHHHCCCCeE
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLV-NWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~-QW~~Ef~KwaPslkV 1078 (1953)
|-+-|..+|.+ . ....++-...|+|||.+.+.-+.+++... .....+|+|+++.... .-...+...++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 45678888876 2 33445556699999999999999998755 3445789999877533 23333333211000
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEccccc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAH 1132 (1953)
.....+. .+. ........+.|.|+..+... ......+.-.+-|+|+..
T Consensus 74 --~~~~~~~--~~~--~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 --QESSDNE--RLR--RQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --HCCTT-H--HHH--HHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --ccccccc--ccc--ccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000000 000 11122346788888877543 222223344566666654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=9.7 Score=48.75 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
.+|..+.|+|||..+-++..++.+... ...++.|..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~ 168 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITS 168 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEH
Confidence 579999999999888887777765322 224555543
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.52 E-value=4.4 Score=50.03 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=75.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPs 1075 (1953)
.++|+|......+...+..+. ++ |++.+-|+||+..+.++..+++-..+..+...=.|+.. .-|.. --|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC------~~~~~g~HPD 75 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGC------QLMQAGTHPD 75 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH------HHHHcCCCCC
Confidence 478999999988888876543 23 68999999999999999988875322211111133322 11111 1255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a 1150 (1953)
+..+.-.++.. ..+.+.++.-...+ ..-.|+++|||+|++|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 76 YYTLTPEKGKS------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEEecccccc------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 54443222110 01111221111111 123789999999999953 23345555555444
Q ss_pred ceeEEeccc
Q 000169 1151 QRRLLLTGT 1159 (1953)
Q Consensus 1151 ~~RLLLTGT 1159 (1953)
...++|+.+
T Consensus 138 ~t~fiL~t~ 146 (334)
T PRK07993 138 NTWFFLACR 146 (334)
T ss_pred CeEEEEEEC
Confidence 455666554
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=5.7 Score=55.38 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
+..|-+-|..+|..++.- +.-.+|.-..|+|||.+. ..+..+++.. ...+++++|+.....=..+- .
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~---t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEGG---S---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhhc---c----
Confidence 347999999999877641 223578888999999864 4444444432 23678888987544322210 0
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh--hhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k--d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
|... .|...+.. ..........++|||||+-.+-. ..+.+.|... ....+|
T Consensus 411 -----Gi~a-------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIAS-------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccch-------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEE
Confidence 1000 00011100 00011123568999999998743 2333444333 456799
Q ss_pred EecccCCCCC
Q 000169 1155 LLTGTPLQND 1164 (1953)
Q Consensus 1155 LLTGTPLQNn 1164 (1953)
+|.|=|-|-.
T Consensus 465 VLVGD~~QLp 474 (988)
T PRK13889 465 VLVGDPQQLQ 474 (988)
T ss_pred EEECCHHHcC
Confidence 9999876543
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=82.33 E-value=4.1 Score=56.06 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|..-|.+++... +...|.||.-+.|+|||..+=++...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 444577777643 2345779999999999988866665543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=82.19 E-value=6.5 Score=43.18 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHH
Confidence 378889999999999988877663 23578888865555554444443
|
A related protein is found in archaea. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=8.5 Score=49.95 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+.++. ++ |++-+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555555444332 33 6899999999988877666554
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.92 E-value=6.8 Score=51.61 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|++.+.|+|||..+-.+...+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 377999999999988777766543
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=81.86 E-value=15 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
.+.+|.-+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 35689999999999887665543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=9.1 Score=48.17 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei 1096 (1953)
+...+|.-.+|+|||.++..++..+....+. .++.+|+-...-..=.+.+..|+. ++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~-------------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK-------------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecC--------------
Confidence 4456789999999999998888776542222 245555532211111122222221 11111111
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-----ccceeEEecccCCCCCHHHHHH
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-----~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
+...+......+ .+.++|+||.+=+.-.. ..+...+..+ .....|.|++|--...+.+++.
T Consensus 202 ----------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 202 ----------DGGDLQLALAEL--RNKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----------CcccHHHHHHHh--cCCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 111111111222 24689999998765322 2233333333 2345788899986666666543
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=13 Score=46.16 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=28.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech----HHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN----AVLVNWKSELH 1070 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~----SLL~QW~~Ef~ 1070 (1953)
.++.-..|+|||-++..++.++.. . ..+++++... ..+.+|..-..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-~--g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-N--GFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCcCcHHHHHHHHHHHH
Confidence 467889999999888777766643 2 2355555532 34556644333
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.37 E-value=1.3 Score=60.20 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=75.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH----HHHHHHHHHHCCCCeEEEEecchhhHhH
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL----VNWKSELHKWLPSVSCIYYVGAKDQRSR 1090 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL----~QW~~Ef~KwaPslkVvvy~Gs~deRk~ 1090 (1953)
|.-..+.++.+.+|.|||+.+-..+.+.+...+. +++.+|+|.. ++ ..|...+.. |+++++-..|.....
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC--
Confidence 4445567889999999999997777766654444 7899999965 43 347655443 578887777654322
Q ss_pred HHHHHHhhccccEEEEeHHHHHhhhhcccc----cCccEEEcccccccCCc
Q 000169 1091 LFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1091 l~~qei~~~~fdVVITTYEsL~kd~s~L~k----ikWd~VIIDEAHrLKN~ 1137 (1953)
-......+++|||++........... -.+..+|+||.|.++..
T Consensus 1015 ----~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 ----VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ----hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 12345679999999976433211111 14667999999998643
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.17 E-value=2.6 Score=51.40 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1004 YQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1004 YQleGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+|...|+-|..... ...+-++..+.|+|||-++.++...|.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 57776666654432 344568899999999999998887765
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.92 E-value=5.2 Score=51.43 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhh--------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLY--------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~--------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
.+++..+.+.|.+... ....+.||+...|+|||+.+-++..++ ..+++-|-...++..|.-|..+.
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 3444555555555332 234467899999999999998776532 23666666559999999888763
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=80.80 E-value=10 Score=44.08 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+|..+.|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 379999999999888777766654
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.38 E-value=6.8 Score=48.29 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPs 1075 (1953)
.++|+|......+...+..+. .-++..+.|+||+..+..++.+++-.....++ .=.|+.. .-+.. -.|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~sC------~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHSC------ELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHHH------HHHHcCCCCC
Confidence 478899888888887765443 24788999999999999998888753321111 1112211 11111 1255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a 1150 (1953)
+.++.-.+... . .+.+.++.-...+ ..-.|+++|||+||+|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~---~---------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGK---S---------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCC---c---------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 54442211000 0 0111221111111 123689999999999953 23345566665555
Q ss_pred ceeEEecccCCCCCHHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwS 1170 (1953)
...++|+.+=...-+.-+.|
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 55666665533333333333
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=80.29 E-value=8.9 Score=45.37 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHC-CCCeEEEEecc
Q 000169 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWL-PSVSCIYYVGA 1084 (1953)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~Kwa-PslkVvvy~Gs 1084 (1953)
=|.|||-.+++|...+.. ++ ++++||= |+.-+..|.+-..+-. ....+.+|...
T Consensus 11 GGaGKTT~~~~LAs~la~-~G--~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~ 67 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAA-RG--ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD 67 (231)
T ss_pred CCCcHHHHHHHHHHHHHH-CC--CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc
Confidence 389999999888887764 22 3455544 7778889976554432 23334445443
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=80.18 E-value=0.16 Score=52.80 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=44.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
+++.++.+| .+|+++.+|+|++++++|++++. +-..|+. |....+-..|+.+ .||+|+
T Consensus 20 ~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 88 (106)
T cd05521 20 NGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIY 88 (106)
T ss_pred CCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 478899999 99999999999999999999876 5566665 6555554444443 677776
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=11 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
....||..+.|+|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999877666543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=80.08 E-value=12 Score=43.73 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=25.2
Q ss_pred CccEEEcccccccCCch---hHHHHHhhhccc-ceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRYRC-QRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlsraLk~L~a-~~RLLLTGT 1159 (1953)
..+++|||+.|.+.+.. ..++..+..+.. ..++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 34789999999885432 335555555443 467888886
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=13 Score=49.60 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=56.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|.-..|+|||-.+.++..++.... ....++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 57899999999988888777766422 12344555444444444433321 0
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhccc-ceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC-QRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~a-~~RLLLTGT 1159 (1953)
.++.+. ..+. ..++||||+.|.+.+... .++..+..+.. ...|++|+.
T Consensus 367 -----~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -----KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -----cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1122 368999999999976433 35555555433 345777664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1953 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 6e-89 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 1e-44 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-38 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 3e-36 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 7e-08 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 626 bits (1616), Expect = 0.0
Identities = 199/642 (30%), Positives = 309/642 (48%), Gaps = 95/642 (14%)
Query: 962 RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLN 1021
F + + Y+ E++ QP ++ G LRD+Q+ G+ WM L++ N
Sbjct: 198 HFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDN 257
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081
GILADEMGLGKTVQ +A I++L+ + GPH+I+VP + + W KW P ++CI Y
Sbjct: 258 GILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 317
Query: 1082 VGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132
+G + R + E +KFNVL+TTYE+I+ DR++L + W+++ +DEA
Sbjct: 318 MGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAH 377
Query: 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192
R+K+ ES L L+ ++ R+L+TGTPLQN++KEL +L+N L+P F +
Sbjct: 378 RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD 437
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
E++ IH LH+ ++PF+LRR +DVE SLP K +LR +
Sbjct: 438 ------------------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVEL 479
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-- 1310
S +Q+ Y I K + +L N EL+K NHP L
Sbjct: 480 SDVQTEYYKNIL-----------TKNYSALTAGAKGGH-FSLLNIMNELKKASNHPYLFD 527
Query: 1311 -----------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
+ + L+ S GK+ +LD++L +L++ GHRVL+FS M ++LDI
Sbjct: 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDI 587
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
L +YL + + ++R+DGT R +I FNS DS+ F+FLLS RA G G+NL +ADTV
Sbjct: 588 LGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV 647
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 1479
+I+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 648 VIFDSDWNPQADLQAMARAHRIGQKNHVMVY----------------------------- 678
Query: 1480 LAGKDRYI--GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH---- 1533
R + ++E + + K+ + +I+ G D ++ L
Sbjct: 679 -----RLVSKDTVEEEVL-ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKF 732
Query: 1534 --DEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG 1573
++ ++ +ED V D + G
Sbjct: 733 GAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLG 774
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 546 bits (1408), Expect = e-175
Identities = 156/584 (26%), Positives = 257/584 (44%), Gaps = 93/584 (15%)
Query: 998 AGTLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRS-----RLFSQEVAALKFN 1102
+++ P++++ NW +E+ KWL V + G SQ+ +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDL E +SL++ + + + F F P K +D D E+ + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ---KLQELIS 289
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
I+ ++RR + + LP K+ V+ C ++ +Q +Y + K V
Sbjct: 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS- 348
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------------LVKS 1326
+ L+K CNHP L Y + F +
Sbjct: 349 -----------SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQL 397
Query: 1327 CGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
GK+ +LD IL + T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R
Sbjct: 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAK 457
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
+ FN+ S FIF+LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+
Sbjct: 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517
Query: 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI--GSIEGLI--RNNIQQY 1501
IY R + G+IE I R Q +
Sbjct: 518 TCY-IY---------------------------------RLLSTGTIEEKILQR---QAH 540
Query: 1502 KIDMADEVINAGRFDQRT-THEERRMTLETLLHDEERYQETVHD 1544
K ++ V++ + +R + E R E +E+ +T HD
Sbjct: 541 KKALSSCVVDEEQDVERHFSLGELR---ELFSLNEKTLSDT-HD 580
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-111
Identities = 127/462 (27%), Positives = 224/462 (48%), Gaps = 47/462 (10%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++A LR YQI G WM + LAD+MGLGKT+Q +A+ + + +
Sbjct: 30 EPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELT 87
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY +
Sbjct: 88 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVL 139
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171
+ D ++L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS+
Sbjct: 140 LRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSI 198
Query: 1172 LNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
+ L P + + F F+ P +K D+ E L I+ PF+LRR
Sbjct: 199 MTFLNPGLLGSYSEFKSKFATPIKKG------DNMAKE---------ELKAIISPFILRR 243
Query: 1232 RVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
D + LP K+ + C ++ Q+A+Y +D +R +
Sbjct: 244 TKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-------KGM 296
Query: 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1349
+ TL ++L++ +HP L + V+ GK+ I+ + G ++ +
Sbjct: 297 ILSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIEEALDEGDKIAI 346
Query: 1350 FSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
F+ + I+ ++ + G S ++R+ I F + + +LS++A G
Sbjct: 347 FTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIVLSVKAGG 405
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 265 bits (677), Expect = 4e-73
Identities = 98/633 (15%), Positives = 201/633 (31%), Gaps = 52/633 (8%)
Query: 981 LAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040
+ R +L +Q+ + + +LADE+GLGKT++ ++
Sbjct: 135 YSSEQFRMPYSGLRGQRT-SLIPHQLNIAHDVGRRHA--PRVLLADEVGLGKTIEAGMIL 191
Query: 1041 AYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100
+ G LIIVP + W E+ + ++ + + ++ +
Sbjct: 192 HQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRFALFDDERYAEAQHDAYNPFD-T 248
Query: 1101 FNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV------LARDLDRYRCQ 1151
+++ + +F + L + +W +++DEA + E L
Sbjct: 249 EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL-AEHVP 307
Query: 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211
LLLT TP Q ++ ++ L LL P F + F + +
Sbjct: 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNY-----------CPVADAV 356
Query: 1212 KKVIIIHRL----HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW----I 1263
++ ++L +L + + +E + + R + + +
Sbjct: 357 AMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRV 416
Query: 1264 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC--MELRKTCNHPLLNYPYFSDLSKD 1321
T KR + + Y+T M RK+ + Y + ++
Sbjct: 417 LFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQE 476
Query: 1322 FLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRID 1375
F + W D + L +VL+ LE+ L+ R+ +
Sbjct: 477 FEGDN-ATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFH 535
Query: 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435
S+ +R+ A F D+ LL G N Q A ++++D NP EQ +
Sbjct: 536 EGMSIIERDRAAAWFAEEDTGAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594
Query: 1436 ARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIR 1495
R RIGQ ++++ + ++ G E S+ +
Sbjct: 595 GRLDRIGQAHDIQIHVP---YLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLI 651
Query: 1496 NNIQQYKI-DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM 1554
N + + D++I R + + LL E L E
Sbjct: 652 NYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQA---LAESIEE 708
Query: 1555 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW 1587
+ + + + G ++ + +
Sbjct: 709 QDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLT 741
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-50
Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 21/229 (9%)
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
+ S L MS Q + D I + + D R + + + + +
Sbjct: 13 ATTLGISGNTSGDYWLPTTMSLYQKELTDQI-----VSLHYSDILRYFETSHYKEDVILE 67
Query: 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDF------LVKSCGKLWILDRILIKLQRTGHR 1346
++ C+ HP L ++ S L ++ GK +L ++ +Q
Sbjct: 68 SMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETE 127
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--SLEDRESAIVDFNSHDSDCFIFLLSI 1404
+ + +D+LE L ++ +R DG + S + S+ F
Sbjct: 128 TAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYP 187
Query: 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEE-QAVARAHRI--GQKREVKVI 1450
+ D +I D + ++ Q + + R G +R ++
Sbjct: 188 IKSKAR-----FDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIV 231
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 4e-49
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 20/233 (8%)
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
H ++ R + LP K+ + C ++ Q+A+Y +D +
Sbjct: 5 HHHHHHSSGLVPRG-SHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIK 63
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILI 1338
R + + TL ++L++ +HP L + V+ GK+ I+
Sbjct: 64 R-------KGMILSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIE 106
Query: 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDC 1397
+ G ++ +F+ + I+ ++ + G S ++R+ I F + +
Sbjct: 107 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSV 165
Query: 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+LS++A G G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 1e-32
Identities = 80/501 (15%), Positives = 167/501 (33%), Gaps = 47/501 (9%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ M + Y + G G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG--GKVLMLAPT 61
Query: 1060 AVLVN-WKSELHKW--LPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYD 1114
LV + LP + G K ++RS+ ++ + V+V T + I D
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVIVATPQTIEND 115
Query: 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---LLLTGTPLQNDLKELW 1169
++S D I+ DEA R + + + R + + LT +P K +
Sbjct: 116 LLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
Query: 1170 SLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
+ NL + + + D D + E + ++ L L+P
Sbjct: 176 VINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
+E +P K + ++ + ++ ++
Sbjct: 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLS 295
Query: 1290 VYKTLNNRCMELRKTCN----HPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKL 1340
+ + E K + + + + K+ L I+ +
Sbjct: 296 ALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQ 355
Query: 1341 --QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--------SLEDRESAIVDF 1390
++ ++++F+ + + L + +R G S +++ + +F
Sbjct: 356 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 415
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+ + L++ GL++ D V+ Y+P P+ Q R R R + ++
Sbjct: 416 ARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILM 472
Query: 1451 YMEAVVDKI--SSHQKEDELR 1469
+ SS QKE ++
Sbjct: 473 AKGTRDEAYYWSSRQKEKIMQ 493
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-23
Identities = 80/454 (17%), Positives = 148/454 (32%), Gaps = 98/454 (21%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DKR--GCIVLPTGSGKTHVAMAAINEL------STPTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L WK L + + K+ + + V+TY+ + K
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELKP-------------LTVSTYDSAYVNAEK 188
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177
L + +I DE + + RL LT T + D + L ++
Sbjct: 189 LGN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH-EILKEVVGG 244
Query: 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 1237
+VF + K + + + +I P RVE
Sbjct: 245 KVF-----------------------ELFPDSLAGKHLAKYTIKRIFVPLAEDERVE--- 278
Query: 1238 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297
+ +++A G ED + V + + R
Sbjct: 279 --------------YEKREKVYKQFLRARGITLRRAEDFNKIVMASGY---------DER 315
Query: 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1357
E + ++ S K+ L IL + ++++F T+
Sbjct: 316 AYEALRAWEE-----------ARRIAFNSKNKIRKLREILER--HRKDKIIIF---TRHN 359
Query: 1358 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417
+++ + + I TS E+RE + F + F ++S + G+++ A+
Sbjct: 360 ELVYRIS--KVFLIPAITHRTSREEREEILEGFRTGR---FRAIVSSQVLDEGIDVPDAN 414
Query: 1418 TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+I + + Q + R R + ++ V+Y
Sbjct: 415 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 5e-21
Identities = 122/709 (17%), Positives = 209/709 (29%), Gaps = 236/709 (33%)
Query: 841 GVAKYHER-ILREFSK--RKDDDRNKRMEALKNNDV---ERYREMLLEQQTSIPGDAAER 894
G +Y + IL F + D + K+ + E +++ DA
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMS------KDAVSG 63
Query: 895 -YAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA--ANAAAAAARLQGLSEEEVRSAAA 951
+ + L++ EE + K VEE N + ++ E R +
Sbjct: 64 TLRLFWTLLSKQEEMVQKF------------VEEVLRINYKFLMSPIK----TEQRQPSM 107
Query: 952 CAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQW 1011
+ R+R D KY V R L+ LR Q
Sbjct: 108 MTRMYIEQRDRLY-----NDNQVFAKYN---------VSRLQPYLK---LR-------QA 143
Query: 1012 MLSLYNNKLNGILADEM-GLGKTVQVMALIAYL-------MEFK------GNYG-PHLII 1056
+L L K +L D + G GKT +AL L M+FK N P ++
Sbjct: 144 LLELRPAK--NVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1057 VP-NAVLVNWKSELHKWLPSVSCIYYVG---AKDQRSRLFSQE--VAAL----------- 1099
+L S + + + RL + L
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 1100 --KFN----VLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQR-MKDRES--VLARDLD- 1146
FN +L+TT + LS +I +D + E +L + LD
Sbjct: 259 WNAFNLSCKILLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206
R + R +LT P S++ + ++G D+
Sbjct: 314 RPQDLPREVLTTNPR------RLSIIAESI-------------------RDGLATW--DN 346
Query: 1207 W--LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI---VLRCRMSAIQSAIYD 1261
W + +K II +LEP R+ + + PP I +L ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILL---------SLI- 395
Query: 1262 WIKATGTLRVDPED-----EKRR-VQKNP---------IY-----QAKVYKTLNNRCME- 1300
W + D K V+K P IY + + L+ ++
Sbjct: 396 WFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1301 ---LRKTCNHPLL-----NYPYF-----------SDLSKDFLVKSCGKLWILD-RIL-IK 1339
+ + L+ Y Y + F ++ LD R L K
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLDFRFLEQK 506
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI-DGTTSLEDRESAIVDF-NSHDSDC 1397
++ ++ L L+ Y + I D E +AI+DF + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENL 559
Query: 1398 FI--FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444
+ +R A L + D I + AH+ Q+
Sbjct: 560 ICSKYTDLLRIA-----LMAEDEAIFEE--------------AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 4e-15
Identities = 99/701 (14%), Positives = 212/701 (30%), Gaps = 215/701 (30%)
Query: 669 KYHGPLFDF-PFFTRKHD---------SVGSTA----MVNSSNNLTLAYDVKDLLSEEGL 714
+Y L F F D S+ S ++ S + ++ + L +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 715 EVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQ 774
E++QK E L+ L ++ ++ +P ++ R+ IEQ+ RL ++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDN----- 123
Query: 775 EIMAMPDRQYRK-FVRLCERQRVELMRQVQTSQKAMRE-------------KQ------L 814
+ + K V R++ +++ + +R K
Sbjct: 124 -------QVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 815 KSISQWRKKLLEAHWAIRDARTARNRGVAK-----YHERILREFSKRKDDDRN--KRMEA 867
S K + W + V + + +I ++ R D N R+ +
Sbjct: 172 LSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHS 229
Query: 868 LKNNDV-----ERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
++ + Y LL + + ++F L KI
Sbjct: 230 IQAELRRLLKSKPYENCLL-----VLLNVQNA-KAWNAF---------NLSCKILLTTRF 274
Query: 923 QEVEEAANAAAAAA-----RLQGLSEEEVRSAAACAGEEVMIRNRFLEMNA---PRDGSS 974
++V + +AA L+ +EV+S ++L+ PR+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----------KYLDCRPQDLPRE--- 321
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
N R + S++ A ++RD W + +KL I+ E L
Sbjct: 322 -------VLTTNPRRL---SII-AESIRDGLATWDNW-KHVNCDKLTTII--ESSL---- 363
Query: 1035 QVMALIAYL--MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRSRL 1091
L E++ + L + P + +P+ + + + +
Sbjct: 364 ------NVLEPAEYRKMF-DRLSVFPPSA----------HIPTILLSLIWFDVIKSDVMV 406
Query: 1092 FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY-------IIIDEAQRMKDRESVLARD 1144
+ ++ S + K K I ++ ++++ ++
Sbjct: 407 VVNK----------------LHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1145 LDRYRCQRRLLLTG-TPLQND----------LK-----ELWSLLNLLLPEVFDNRKAFHD 1188
+D Y + P D LK E +L ++ D R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFR----- 501
Query: 1189 WFSQPFQKEGPTHNADDDW------LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
+ Q + + NA L+ K I + E R V + LP
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYE-----RLVNAILDFLPK 554
Query: 1243 KVSIVLRCRMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQK 1282
++ + + + + A+ + E+ ++VQ+
Sbjct: 555 IEENLICSKYTDLLRIALMA--EDEAIF----EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 2e-13
Identities = 92/637 (14%), Positives = 192/637 (30%), Gaps = 201/637 (31%)
Query: 1020 LNGILADE-----MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL---HK 1071
IL+ E + V + + + K V + L +K
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYK 92
Query: 1072 WL----------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+L PS+ Y+ +QR RL++ K+NV + + + R L ++
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLEL 147
Query: 1122 -DWKYIIIDEAQRM----KDRESVLARD-LDRYRCQRRL------LLTG---TPLQNDLK 1166
K ++I + K + +A D Y+ Q ++ L +P + L+
Sbjct: 148 RPAKNVLI---DGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLE 200
Query: 1167 ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ---- 1222
L LL + P +W S+ ++ E + ++ + ++
Sbjct: 201 MLQKLLYQIDP----------NWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLL 248
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIV----LRCRMSAI--QSAIYDWIKATGTLRVDPEDE 1276
+L V++ + L C++ + D++ A T + +
Sbjct: 249 VL------LNVQNAK--------AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 1277 KRRVQKNPIYQAKVY--KTLNNRCMEL-RKTCN-HPLLNYPYFSDLSKDFLVKSCGKLWI 1332
+ + + K K L+ R +L R+ +P LS
Sbjct: 295 SMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRR-------LS------------- 331
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT--TSLEDRESAIVDF 1390
+ + + D L + W+ + ++ +SL E A ++
Sbjct: 332 ----------------IIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EY 371
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+F S ++ + + D + V + H+
Sbjct: 372 RKMFDRLSVFPPSA-------HI-PTILLSLIWFDVIKSDVMVVVNKLHK---------- 413
Query: 1451 YMEAVVDKISSHQKEDELRSGGTV---DLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++V+K KE T+ + +L K ++ R+ + Y I
Sbjct: 414 --YSLVEK---QPKE------STISIPSIYLELKVKLENEYALH---RSIVDHYNIPKT- 458
Query: 1508 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQ 1567
FD L D+ Y H L+ + + LF
Sbjct: 459 -------FDSDD--------LIPPYLDQYFYSHIGH---HLKN-----IEHPERMTLFRM 495
Query: 1568 MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 1604
+ +F ++E+ R+D S + T+ L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGS---ILNTLQQLKF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 5e-08
Identities = 100/669 (14%), Positives = 190/669 (28%), Gaps = 208/669 (31%)
Query: 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 1427
Q Y+ I L E A VD + DC ++ L + I
Sbjct: 15 QYQYKDI-----LSVFEDAFVD----NFDCKDVQDMPKSI-----LSKEEIDHII----- 55
Query: 1428 PKNEEQAVARAHRI------GQKREVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDL 1476
+ AV+ R+ Q+ V+ ++E V+ +S + E S T
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMT--- 109
Query: 1477 EDDLAGKDRYIGSIEGLIRNN--IQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1534
YI + L +N +Y N R + + R L L
Sbjct: 110 -------RMYIEQRDRLYNDNQVFAKY---------NVSRLQP---YLKLRQALLEL--R 148
Query: 1535 EERYQETVHDVP-----SL-QEVNRMIARSEDEVELFDQMDEEFG--WIEEMTRYDQVPK 1586
+ + V + +V S D F W+ + +
Sbjct: 149 PAKNV-LIDGVLGSGKTWVALDV----CLSYKVQCKMD-----FKIFWLN-LKNCNSP-- 195
Query: 1587 WLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPN-------- 1638
+ + + + + SNI + I+ E +R K K Y N
Sbjct: 196 --ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1639 --------------------YKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYS 1678
+K+V D + + + + + DE
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--------THISLDHHSMT-LTPDEVK 304
Query: 1679 GAVGAPLSNKDQS--EEDGPVCEG--------GYDYLRPSENTRNN--HVVEEAGSSGSS 1726
+ L + Q E V + +R T +N HV
Sbjct: 305 SLLLKYLDCRPQDLPRE---VLTTNPRRLSIIA-ESIRDGLATWDNWKHV---------- 350
Query: 1727 SNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAV-SGDSHMDHQQ- 1782
N +LT I+ SL+ LE P E + ++V +H+
Sbjct: 351 -NCDKLTTIIE-------SSLNVLE----------PAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 1783 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR------HTVERPEERSCTDTP-LHRGDS 1835
S W D + + V+ K+ + + +P+ ++ + + LHR
Sbjct: 393 SLIWF-DVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--- 447
Query: 1836 SLLPFQMDNKY--PAQLRTDTEMKAHGESNSLRH--------DQSEPSSKSRR---NLP- 1881
S++ + Y P +D + + + H + E + R +
Sbjct: 448 SIV-----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 1882 -SRKI------ANAPKSRASLKTGRLNCMPGHTEDAADHFKESWD--GKIANASGSSNFS 1932
+KI NA S + +L + D ++ + +
Sbjct: 503 LEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 1933 AKMSDVIQR 1941
+K +D+++
Sbjct: 562 SKYTDLLRI 570
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 9e-17
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DK--RGCIVLPTGSGKTHVAMAAINELST------PTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L WK L + + K+ + + V+TY+ Y ++
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELK-------------PLTVSTYD-SAYVNAE 187
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKE 1167
+ +I DE + + RL LT T + D +
Sbjct: 188 KLGNRFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH 235
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 63.5 bits (153), Expect = 5e-10
Identities = 87/626 (13%), Positives = 185/626 (29%), Gaps = 72/626 (11%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKT-VQVMALIAYLMEFKGNYGPH-LIIV 1057
R+YQ+ + N I+ G GKT V ++ +L +F +
Sbjct: 13 KPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 68
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ KS K+ + + +++ ++++ T + ++ +
Sbjct: 69 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLK 127
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRCQRR------LLLTGTPLQND 1164
K S + +I DE + ++ LD+ + LT + D
Sbjct: 128 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
Query: 1165 LKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
K L+ + ++ + A + +E + + I + I+
Sbjct: 188 AKTTDEALDYIC-KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 246
Query: 1225 EPFM--LRRRVEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281
M + + L I R + + I KA ++ +DE+ R+
Sbjct: 247 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNY--------------PYFSDLSKDFLVKSC 1327
K + N+ + L+Y DL++ F K
Sbjct: 307 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 366
Query: 1328 G-------------KLWILDRILIK------LQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368
KL L IL + T V + + L + +E +
Sbjct: 367 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 426
Query: 1369 LVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420
L + G L ++ + F S L++ A G+++ + VI
Sbjct: 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAF--KASGDHNILIATSVADEGIDIAQCNLVI 484
Query: 1421 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480
+Y+ N Q R G K + + + + KE + D L
Sbjct: 485 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN-----DSILRL 539
Query: 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
D + + L +++ D ++ + + + L D ++
Sbjct: 540 QTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIED 599
Query: 1541 TVHDVPSLQEVNRMIARSEDEVELFD 1566
+ V ++R + + F
Sbjct: 600 CHYTVLGDAFKECFVSRPHPKPKQFS 625
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 8e-10
Identities = 87/649 (13%), Positives = 180/649 (27%), Gaps = 85/649 (13%)
Query: 926 EEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAV 985
A+ ++ + ++V S A E+ + + A D + S A +
Sbjct: 178 TTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGI 237
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
+ + R YQI Q ++ N ++ G GKT + + + +
Sbjct: 238 GKPPPVYETK----KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQ 289
Query: 1046 --FKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
G + + + K+ + + S + ++V +
Sbjct: 290 NMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSD 348
Query: 1103 VLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ-------- 1151
++V T + ++ S + +I DE + RY Q
Sbjct: 349 IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQL 407
Query: 1152 -RRLLLTGTPL----QNDLKELWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGP 1199
+ L LT + +N + + + +L + V +N + + ++P
Sbjct: 408 PQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467
Query: 1200 THNADDDWLETEKKVI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ 1256
+ + + I L + + G+ + IV+ R +
Sbjct: 468 VKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLL 527
Query: 1257 --------SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELR 1302
S I + D + I A Y N EL
Sbjct: 528 QLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELE 587
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKL 1356
+ KL L IL R LLF+ ++ L
Sbjct: 588 QHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL 647
Query: 1357 LDILEEYLQWRQLVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
+EE + + G L ++ + F S L++ A
Sbjct: 648 KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF--KTSKDNRLLIATSVAD 705
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG----------------QKREVKVIYM 1452
G+++ + V++Y+ N Q R G + K M
Sbjct: 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMM 765
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
V+KI +E + + +++ + R ++
Sbjct: 766 NKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLL 814
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 59.6 bits (143), Expect = 1e-08
Identities = 64/505 (12%), Positives = 134/505 (26%), Gaps = 71/505 (14%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 248 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ K+ + + S + ++V +++V T + ++
Sbjct: 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFE 362
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQND 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421
Query: 1165 LKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
K + + + + + +E + K I + I+
Sbjct: 422 AKNIEETIEHIC-SLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
M E + ++ ++ + WI T + E + +
Sbjct: 481 SNLM--SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538
Query: 1285 IYQAKVYKTLNNRC-------------------------------MELRKTCNHPLLNYP 1313
+ + EL +
Sbjct: 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKE 598
Query: 1314 YFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWR 1367
KL L IL R LLF+ ++ L +EE
Sbjct: 599 PELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 658
Query: 1368 QLVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
+ + G L ++ + F + + + S+ A G+++ + V
Sbjct: 659 YIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLV 716
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQK 1444
++Y+ N Q R G K
Sbjct: 717 VLYEYSGNVTKMIQVRGRGRAAGSK 741
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 71/510 (13%), Positives = 145/510 (28%), Gaps = 69/510 (13%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 7 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ K+ + + S + ++V +++V T + ++
Sbjct: 63 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFE 121
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQND 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 122 DGTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 180
Query: 1165 LKE----LWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
K + + +L + V +N + + ++P +
Sbjct: 181 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240
Query: 1214 VII---IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI--------QSAIYDW 1262
++ + I L + + G+ + IV+ R + +S I
Sbjct: 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRA 300
Query: 1263 IKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLNYPYFS 1316
+ D + I A Y N EL +
Sbjct: 301 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPEL 360
Query: 1317 DLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWRQLV 1370
KL L IL R LLF+ ++ L +EE +
Sbjct: 361 IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK 420
Query: 1371 YRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422
+ G L ++ + F + + + S+ A G+++ + V++Y
Sbjct: 421 PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLVVLY 478
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
+ N Q R + K I +
Sbjct: 479 EYSGNVTKMIQVRGRG----RAAGSKCILV 504
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 61/516 (11%), Positives = 147/516 (28%), Gaps = 79/516 (15%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII--V 1057
R+YQ+ N I+ G GKT + + + ++ ++
Sbjct: 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGA---KDQRSRLFSQEVAALKFNVLVTTYEFIMY 1113
+ + ++ + Y + + S + ++++ T + ++
Sbjct: 60 NQIPVYEQQATVFSRYFERLG--YNIASISGATSDSVSVQHIIE--DNDIIILTPQILVN 115
Query: 1114 DRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ----------RRLLLTGTP 1160
+ + S + +I DE + + + RY + + LT +
Sbjct: 116 NLNNGAIPSLSVFTLMIFDECHNT-SKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174
Query: 1161 LQND----------LKELWSLLNL-LLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209
D + +L + L+ ++ V DN +P + + + +
Sbjct: 175 GVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234
Query: 1210 TEKKVI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV--LRCRMSAIQSAI----- 1259
+ + E ++++ E + + S Q A
Sbjct: 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEES 294
Query: 1260 --YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLN 1311
+ + D + + A Y E +
Sbjct: 295 RVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEE 354
Query: 1312 YPYFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFSTMTKLLDILEEYLQWR-- 1367
+ KL L +L + + + +LF L+D L+++++
Sbjct: 355 KLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPA 414
Query: 1368 -----------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416
+ R G T + S D++ L++ A G+++
Sbjct: 415 LSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI---LIATSVADEGIDIAEC 471
Query: 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
+ VI+Y+ N Q R + R+ K +
Sbjct: 472 NLVILYEYVGNVIKMIQTRGRG----RARDSKCFLL 503
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 5e-06
Identities = 19/199 (9%), Positives = 57/199 (28%), Gaps = 10/199 (5%)
Query: 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWI 1332
P + ++ + + K+ E Y ++ + +
Sbjct: 282 PVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKG----KTYQEEI--KIITGLSKRNKW 335
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392
+ ++ IKL + + + + ++ + G E R +
Sbjct: 336 IAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN 395
Query: 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
I + S G+++++ V++ + Q + R R + + ++
Sbjct: 396 --GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW- 452
Query: 1453 EAVVDKISSHQKEDELRSG 1471
++D K +
Sbjct: 453 -DLIDDAGVKPKSANTKKK 470
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
+L LQ+T VL+F+ +D + EYL + + I G E+R AI F
Sbjct: 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 103
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
D L++ A +GL+ + VI YD P+ E V HRIG
Sbjct: 104 KKD---VLVATDVASKGLDFPAIQHVINYD---MPEEIENYV---HRIG 143
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 768 EVDQQQQEIMAMPD--RQYRKFVRLCERQRVEL-MRQVQTSQK--AMREKQLKSISQWRK 822
+ D+ QE P+ R++R E QR L + REK K + +W +
Sbjct: 76 QADRLTQE----PESIRKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Query: 823 KLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDD 860
+ E + NR K F ++ D D
Sbjct: 126 RQSEQ----VEKNKINNRIADK-------AFYQQPDAD 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1953 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.98 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.98 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.97 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.96 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.95 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.95 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.95 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.94 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.94 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.92 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.92 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.9 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.9 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.9 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.89 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.89 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.88 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.87 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.83 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.78 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.78 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.78 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.77 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.77 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.75 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.75 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.75 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.74 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.73 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.73 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.72 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.7 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.7 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.7 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.7 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.69 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.69 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.68 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.68 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.65 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.65 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.64 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.64 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.63 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.42 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.62 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.62 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.6 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.6 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.6 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.6 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.59 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.58 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.56 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.56 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.55 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.55 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.54 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.49 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.48 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.44 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.44 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.31 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.3 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.3 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.96 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.8 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.73 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.31 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.17 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.07 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.02 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.83 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.8 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.42 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.61 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.3 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.89 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 94.53 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.45 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.21 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.44 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.36 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 93.23 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.78 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.72 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.39 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.29 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 91.78 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 91.63 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 91.3 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 90.76 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 90.13 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 90.06 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.99 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 88.78 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 88.57 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 88.56 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 88.56 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 88.43 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 88.39 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 88.36 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 88.34 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 87.87 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 87.82 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 87.79 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 87.62 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 87.36 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 87.2 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 87.01 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 86.35 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 85.58 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 85.55 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 84.87 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 84.86 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 84.61 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 84.13 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 84.11 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 84.09 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 84.03 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 83.96 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 83.83 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 83.63 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 83.59 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 82.89 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 82.88 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 82.34 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 82.09 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 81.16 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 81.14 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 80.43 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 80.24 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 80.08 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-77 Score=771.78 Aligned_cols=468 Identities=40% Similarity=0.679 Sum_probs=396.0
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||+|||+++|++|.+++......+|+|||||.+++.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 44567888888899999999999999999999999999999999999999999999877888899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH---------HhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qe---------i~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~ 1138 (1953)
||.+|+|++.+++|+|....+..+.... .....++|+||||+++.++...|..++|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 9999999999999999988776543322 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1139 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1139 SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
+++++++..+.+.+||+|||||++|++.|||++|+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998665553110 0 0 11223467
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nil 1298 (1953)
.|+.++.||++||++.+|...||++.+.++.|.|++.|+.+|+.+.......+.... ......+++.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998765433222110 11234578899
Q ss_pred HHHHHhcCCCCCCCCCcccc-------------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH
Q 000169 1299 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dl-------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~ 1365 (1953)
+.||++|+||+++....... ....++..++|+.+|..+|..+...|+||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
.+|+.|++|||+++.++|..++++|+++++..+|||+||++||+||||+.||+||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccccccc
Q 000169 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~k 1518 (1953)
+|.||+|++ .+|||++|+++ +..|+.++..||+.|.++..
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~~ 713 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDGN 713 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC-----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCccccc
Confidence 999999986 37999999995 57899999999998877643
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-72 Score=711.62 Aligned_cols=469 Identities=30% Similarity=0.484 Sum_probs=389.6
Q ss_pred CCCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHH
Q 000169 998 AGTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL~QW~~E 1068 (1953)
...|||||++||.||+..+ .++.||||||+||+|||+++|++|..++...+ ..+++|||||.+++.||..|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3589999999999999876 45678999999999999999999999876443 24569999999999999999
Q ss_pred HHHHCCC-CeEEEEec-chhhHhHHHHHHHh----hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHH
Q 000169 1069 LHKWLPS-VSCIYYVG-AKDQRSRLFSQEVA----ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1069 f~KwaPs-lkVvvy~G-s~deRk~l~~qei~----~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
|.+|+|. +.++.+.+ ....+...+..... ...++|+||||+++..+...|....|++|||||||++||..++.+
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~ 212 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTY 212 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHH
Confidence 9999975 55666554 44333322222111 125789999999999998889999999999999999999999999
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
+++..+.+.+||+|||||++|++.|||++++||.|++|++...|.++|..|+.......... .........+.+|+.
T Consensus 213 ~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~---~~~~~~~~~~~~L~~ 289 (644)
T 1z3i_X 213 LALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD---KDRAAGEQKLQELIS 289 (644)
T ss_dssp HHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS---HHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886654333222 222333445778999
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
++.||++||++.++..+||++.+.+++|+|++.|+.+|+.+.......... ... .........++.||
T Consensus 290 ~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999886543221100 000 01234556788999
Q ss_pred HhcCCCCCCCCCc-------cc--------c-chhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHHHHH
Q 000169 1303 KTCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1303 KiCNHP~L~~p~l-------~d--------l-s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed~L~ 1365 (1953)
++||||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 9999998753210 00 0 011234568999999999998864 58999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
..|+.|+++||+++.++|.+++++|++++...+|||+||++||+||||+.|++||+||+||||..+.||+||+||+||++
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 99999999999999999999999999887777899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccc
Q 000169 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 1514 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGk 1514 (1953)
+|.||+|++ .++||++|+++ +..|..+.+.|++.+.
T Consensus 518 ~v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 518 TCYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEEQ 553 (644)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCSS
T ss_pred ceEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCcc
Confidence 999999976 37999999985 5778888887776653
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-67 Score=639.06 Aligned_cols=444 Identities=29% Similarity=0.516 Sum_probs=378.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 993 Ps~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
|..+. .+|||||.+|+.||..++..+.||||||+||+|||+++++++..+.. .+..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccce
Q 000169 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (1953)
Q Consensus 1073 aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~ 1152 (1953)
+|.+.+.+++|.... .....++|+||||+++.++.. +....|++|||||||+++|..+++++++..+.+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~ 179 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 179 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCc
Confidence 999999999887532 224578999999999987755 67789999999999999999999999999999999
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.|+++||+
T Consensus 180 ~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~ 244 (500)
T 1z63_A 180 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRT 244 (500)
T ss_dssp EEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeec
Confidence 9999999999999999999999999999999999999988765421 1134578899999999999
Q ss_pred Hhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1233 VED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1233 KkD--VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+.+ +...||++.+.+++|+|++.|+.+|+.+.......+.... .......+...++.||++|+||.+
T Consensus 245 k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~lr~~~~~p~l 313 (500)
T 1z63_A 245 KYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT-----------GIKRKGMILSTLLKLKQIVDHPAL 313 (500)
T ss_dssp TTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC-----------THHHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh-----------cccchHHHHHHHHHHHHHhCCHHH
Confidence 976 6779999999999999999999999987654322111100 011234567788999999999987
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIer 1389 (1953)
.... ...+..++|+..|.++|.++...++|+||||+++.+++.|.++|... |+.+.+++|+++.++|.+++++
T Consensus 314 ~~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~ 387 (500)
T 1z63_A 314 LKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 387 (500)
T ss_dssp HHCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHH
T ss_pred hcCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHH
Confidence 5421 22346689999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~L 1469 (1953)
|+++ ..+.|||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 388 F~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~--------------- 451 (500)
T 1z63_A 388 FQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------- 451 (500)
T ss_dssp HHHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE---------------
T ss_pred hcCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe---------------
Confidence 9974 245678999999999999999999999999999999999999999999999999999976
Q ss_pred cCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000169 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1470 s~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAG 1513 (1953)
.+|+|+.|++. ...|..+.+.++..+
T Consensus 452 -----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 -----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp -----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred -----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 37899999984 577888888777764
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=503.13 Aligned_cols=434 Identities=18% Similarity=0.219 Sum_probs=320.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||.+|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCchhH---HHHHhhhc--cc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~~SK---lsraLk~L--~a 1150 (1953)
.+|.|........ ........++|+|+||+.+.++. ..+...+|++|||||||+++|..+. .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~~~-~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEAQH-DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHHHH-TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhhhh-hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 7777654332111 11122346799999999998763 3466779999999999999987654 47778777 67
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcc---------cCCC---------CC-----------
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGP---------TH----------- 1201 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~---------k~g~---------~~----------- 1201 (1953)
.++|+|||||++|++.|+|++++|+.|+.|++...|..++..... .... ..
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999999999999999999999888866421100 0000 00
Q ss_pred ----CCChhhHHHHHHHHHHHHHHHHh-----hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000169 1202 ----NADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (1953)
Q Consensus 1202 ----~~e~d~l~eEek~liI~RLhklL-----rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld 1272 (1953)
....... . .. ...+..++ ..+++|+.+..+ ..+|.+....+.+.+++....+|+...........
T Consensus 387 ~~~~~~~~~~~-~-~~---~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 387 QAANSDSEDAQ-S-AR---QELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp GGTCCCSSCST-T-TH---HHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hcccchhhhhH-H-HH---HHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000 0 00 01122222 234455555555 46899999999999999999998765332111110
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeec
Q 000169 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1352 (1953)
Q Consensus 1273 ~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ 1352 (1953)
... ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.++||||+
T Consensus 461 ~~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~ 511 (968)
T 3dmq_A 461 EDR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICA 511 (968)
T ss_dssp GGG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECS
T ss_pred HHH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeC
Confidence 000 0011223222222111 111245567899999999987 57899999999
Q ss_pred hhHHHHHHHHHHHH-cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhH
Q 000169 1353 MTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431 (1953)
Q Consensus 1353 ft~~LDILed~L~~-rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d 1431 (1953)
++.+++.|..+|.. .|+++..+||+++..+|..++++|+++++.+ .+|++|+++++|||++.|++||+||+||||..|
T Consensus 512 ~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~ 590 (968)
T 3dmq_A 512 KAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLL 590 (968)
T ss_dssp STHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHH
Confidence 99999999999995 5999999999999999999999999865334 467899999999999999999999999999999
Q ss_pred HhhhhcccccCCcceEEEEEEeh---hhhhhhhhhhhhhhccCCc
Q 000169 1432 EQAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELRSGGT 1473 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT---VEEkI~s~q~EKe~Ls~gt 1473 (1953)
.|++||++|+||++.|.||+++. ++++|.....++..+....
T Consensus 591 ~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~ 635 (968)
T 3dmq_A 591 EQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHT 635 (968)
T ss_dssp HHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSC
T ss_pred HHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecC
Confidence 99999999999999999998864 6666766665554444333
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=420.97 Aligned_cols=427 Identities=18% Similarity=0.181 Sum_probs=277.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa--Psl 1076 (1953)
+|||||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||. .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888775 345689999997 69999999999998 667
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhh-hcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk-~L~a~ 1151 (1953)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....
T Consensus 82 ~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 82 KIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred heEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 889998876544221 123468999999999987643 45567899999999999986432 2222222 23567
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhccccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF---~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
++|+|||||. ++..+++.++.++....+ .....+...+..+........... .....+...+.+++
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREML 226 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHH
Confidence 8999999999 777788887777755432 222111111111110000000000 01345677778888
Q ss_pred HHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHH
Q 000169 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~k----n~~~~ak~~~sL~nilmqLRK 1303 (1953)
.++++......+..... .+-...+......++..+................... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 88877655443322211 0101111122222222221110000000000000000 000000112233344445555
Q ss_pred hcCCCCCCCC--Cccccch----------hhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1304 TCNHPLLNYP--YFSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1304 iCNHP~L~~p--~l~dls~----------d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
.|.|+..... .+.+... ......++|+..|.++|..+. ..++|+||||+++.+++.|.++|...|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~ 386 (494)
T 1wp9_A 307 EAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386 (494)
T ss_dssp HHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC
Confidence 5544211000 0000000 001146789999999999876 5789999999999999999999999999
Q ss_pred eEEeecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1370 VYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1370 kylRLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
.+..++| +++.++|..++++|+++... +|++|+++++||||+.|++||+||++|||..++||+||++|.
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 9999999 99999999999999986544 689999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeh
Q 000169 1442 GQKREVKVIYMEA 1454 (1953)
Q Consensus 1442 GQKKeV~VyrLvT 1454 (1953)
|+ +.+|+|++
T Consensus 464 g~---g~~~~l~~ 473 (494)
T 1wp9_A 464 MP---GRVIILMA 473 (494)
T ss_dssp CC---SEEEEEEE
T ss_pred CC---ceEEEEEe
Confidence 98 56666654
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=384.76 Aligned_cols=356 Identities=19% Similarity=0.218 Sum_probs=253.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998765 4569999999999999998887654 4689999998 7999999999995 56
Q ss_pred e-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEE
Q 000169 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1077 k-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLL 1155 (1953)
. +.+++|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 6 7777776432 46899999999987765443 36999999999999986544 3555678889999
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkD 1235 (1953)
|||||.+++..+ .. |..++.|++.++...+
T Consensus 224 lSATp~~~~~~~----------------~~----------------------------------l~~~~~~~~~~~~~~~ 253 (472)
T 2fwr_A 224 LTATFEREDGRH----------------EI----------------------------------LKEVVGGKVFELFPDS 253 (472)
T ss_dssp EESCCCCTTSGG----------------GS----------------------------------HHHHTCCEEEECCHHH
T ss_pred EecCccCCCCHH----------------HH----------------------------------HHHHhCCeEeecCHHH
Confidence 999998754211 01 1112222222222223
Q ss_pred hh-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc-CCCCCCCC
Q 000169 1236 VE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC-NHPLLNYP 1313 (1953)
Q Consensus 1236 Ve-kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC-NHP~L~~p 1313 (1953)
+. ..+++.....+.+.+++.+...|..+.......+...... ......+ . .+-.++ ..+.....
T Consensus 254 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~-------~~~~~~~~~~~~~~~ 319 (472)
T 2fwr_A 254 LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----N-------KIVMASGYDERAYEA 319 (472)
T ss_dssp HTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----T-------TTTTTTCCSSSSSTT
T ss_pred HhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhH-----H-------HHHHHhccCHHHHHH
Confidence 32 3477777778899999999888864422111000000000 0000000 0 000000 00000000
Q ss_pred Cc-cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1314 YF-SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1314 ~l-~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
.. ...........+.|+..|.++|.. ..++++||||+++.+++.|.+.|. +..++|+++..+|.+++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 320 LRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp THHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC
Confidence 00 000011223456899999999887 568999999999999999999983 5579999999999999999998
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc-ceEEEEEEeh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (1953)
+... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|+. +.|.||+|++
T Consensus 393 g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 393 GRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 6555 689999999999999999999999999999999999999999998 8899999976
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=371.30 Aligned_cols=428 Identities=15% Similarity=0.131 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999888877753321 5689999997 689999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+..++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433221 12234689999999999865422 3 445789999999999987654 22222222
Q ss_pred -------ccceeEEecccCCCCCH-------HHHHHHHhhhcccc----cCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1149 -------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEV----FDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1149 -------~a~~RLLLTGTPLQNnL-------~ELwSLLnFLlP~i----F~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
...++|+|||||..++. ..+..+...+.... ......+..++..|................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 236 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH-
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH-
Confidence 23579999999988663 33334444444332 223455666666554322111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000169 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (1953)
Q Consensus 1211 Eek~liI~RLhklLrP----------------------FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~ 1268 (1953)
.........++..+.. ++....+......+|. ......+|..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTE 306 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHH
Confidence 1111112222222221 2222112111111111 1112222222111000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC------CCCCccccc--hhhhhhcccHHHHHHHHHHHH
Q 000169 1269 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLS--KDFLVKSCGKLWILDRILIKL 1340 (1953)
Q Consensus 1269 l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L------~~p~l~dls--~d~Li~~SGKLelLdrIL~kL 1340 (1953)
.. ........... ..........+...+..++....++.- +......+. .......++|+..|.++|...
T Consensus 307 ~l-~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~ 384 (556)
T 4a2p_A 307 HL-RKYNDALIISE-DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 384 (556)
T ss_dssp HH-HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH
Confidence 00 00000000000 000000011111111111110000000 000000000 000012478999999999877
Q ss_pred H--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEecc
Q 000169 1341 Q--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1405 (1953)
Q Consensus 1341 k--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLSTr 1405 (1953)
. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|+. +... ||++|+
T Consensus 385 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 461 (556)
T 4a2p_A 385 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATS 461 (556)
T ss_dssp HHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC
T ss_pred hcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcC
Confidence 6 66899999999999999999999875 5566667788999999999999997 5444 689999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++++|||+++|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 99999999999999999999999999999999 555 5666777654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=366.00 Aligned_cols=434 Identities=13% Similarity=0.151 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++...+..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999875 6789999999999999999988877753321 6789999998 689999999999986
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+..+.|........ ......++|+|+||+.+...... + ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 68888888876443221 12234689999999999875432 3 345789999999999987654 22222222
Q ss_pred --------ccceeEEecccCCCCC-------HHHHHHHHhhhccccc----CChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1149 --------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1149 --------~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF----~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...++|+|||||..++ +..++.+..++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2246999999999887 3444444455553322 23345555555443222111111111111
Q ss_pred HHHHHHHHHHHHHHhhHHHHH--HHHhhhhcCCCCceE-----------EEEEeccCHHHHHHHHHHHHccCcccCchhH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLR--RRVEDVEGSLPPKVS-----------IVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLR--RlKkDVekdLPpKvE-----------~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~e 1276 (1953)
......+.++..++..++-. .+.......+..... .............+|..+...... +.....
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 312 (555)
T 3tbk_A 235 -CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSH-LRKYND 312 (555)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH-HHHHHH
Confidence 11111223333333322211 000000000000000 000000000111111111000000 000000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC----------CCccccc--hhhhhhcccHHHHHHHHHHHHHhc-
Q 000169 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY----------PYFSDLS--KDFLVKSCGKLWILDRILIKLQRT- 1343 (1953)
Q Consensus 1277 k~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~----------p~l~dls--~d~Li~~SGKLelLdrIL~kLkat- 1343 (1953)
...+... .........+...+..+ .+..+.. .....+. .......++|+..|..+|..+...
T Consensus 313 ~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 313 ALIISED-AQMTDALNYLKAFFHDV----REAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHH-SCHHHHHHHHHHHHHHH----CC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhh-hhHHHHHHHHHHHHHHH----hhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 0000000 00000000000111111 0000000 0000000 000112478999999999987644
Q ss_pred -CCeeEEeechhHHHHHHHHHHHHcC------------CeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEecccccc
Q 000169 1344 -GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIRAAGR 1409 (1953)
Q Consensus 1344 -GhKVLIFSQft~~LDILed~L~~rG------------ikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLSTrAGGe 1409 (1953)
++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ +... +|++|+++++
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~~~ 464 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVADE 464 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCTTC
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcchhhc
Confidence 4999999999999999999999874 345556669999999999999997 4444 6889999999
Q ss_pred ccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1410 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1410 GLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|||++.|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 465 GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 465 GIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp CEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred CCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 9999999999999999999999999999 5557777887765
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=359.06 Aligned_cols=235 Identities=25% Similarity=0.357 Sum_probs=175.1
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
-+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+. ... .......+.+.++.||++|+|
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999999988654211111 000 011234577889999999999
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqea 1386 (1953)
|+++... ..++..++|+..|.++|..+...++||||||+++.++++|+.+|... |+.+.++||+++.++|..+
T Consensus 82 P~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 82 PALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp THHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHH
T ss_pred HHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHH
Confidence 9886421 12456799999999999999889999999999999999999999985 9999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhh
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKED 1466 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EK 1466 (1953)
+++|+.+ ..++|||+||++||+||||+.|++||+||+||||..++||+||+||+||+++|.||+|++
T Consensus 156 i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~------------ 222 (271)
T 1z5z_A 156 ISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS------------ 222 (271)
T ss_dssp HHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE------------
T ss_pred HHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee------------
Confidence 9999974 346689999999999999999999999999999999999999999999999999999976
Q ss_pred hhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000169 1467 ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1467 e~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAG 1513 (1953)
.+|||+.|++. +..|..+.+.+++.+
T Consensus 223 --------------------~~TiEe~i~~~-~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 --------------------VGTLEEKIDQL-LAFKRSLFKDIISSG 248 (271)
T ss_dssp --------------------TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred --------------------CCCHHHHHHHH-HHHHHHHHHHHHccC
Confidence 37999999984 578999999998875
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=387.68 Aligned_cols=429 Identities=15% Similarity=0.139 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||.. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35899999999999875 6789999999999999999988887754321 67899999965 99999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cc-cccCccEEEcccccccCCchhHHHHHhhhc-
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L- 1148 (1953)
++.+..++|........ ......++|+|+||+.+..... .+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999998876443221 1223578999999999986542 22 344789999999999987654 22222222
Q ss_pred --------ccceeEEecccCCCCCH----------HHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1149 --------RCQRRLLLTGTPLQNDL----------KELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1149 --------~a~~RLLLTGTPLQNnL----------~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...++|+|||||.+++. .+|+..|+.- ..........+..++..|...............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 476 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF- 476 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-
Confidence 22569999999987653 3344443321 112223345666776665433211111111111
Q ss_pred HHHHHHHHHHHHHHhhHHH----------------------HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000169 1210 TEKKVIIIHRLHQILEPFM----------------------LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFm----------------------LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~ 1267 (1953)
..........++.++..++ ....+......+|.. .....+|..+....
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHH
Confidence 1111122334444443322 111111111111111 11111121111000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC------CCCCCccccc--hhhhhhcccHHHHHHHHHHH
Q 000169 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL------LNYPYFSDLS--KDFLVKSCGKLWILDRILIK 1339 (1953)
Q Consensus 1268 ~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~------L~~p~l~dls--~d~Li~~SGKLelLdrIL~k 1339 (1953)
.. +........+. ...........+...+..++..+..+. .+......+. .......++|+..|..+|.+
T Consensus 547 ~~-l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 547 EH-LRKYNDALIIS-EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HH-HHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhh-ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 00 00000000000 000000001111111111111100000 0000000000 00001247899999999987
Q ss_pred HH--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEec
Q 000169 1340 LQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSI 1404 (1953)
Q Consensus 1340 Lk--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLST 1404 (1953)
.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|++ +... |||+|
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT 701 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 701 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEE
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEc
Confidence 54 56799999999999999999999873 6667778899999999999999997 5544 78999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+++++||||+.|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 999999999999999999999999999999999 565 6667777754
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=388.47 Aligned_cols=414 Identities=16% Similarity=0.166 Sum_probs=221.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.|++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 247 ~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 247 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999975 678999999999999999888876654322 167899999965 99999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+.+++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 323 ~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 78899998876443221 12234689999999999875422 2 334689999999999987654 33333332
Q ss_pred -------ccceeEEecccCCCCCHHH----------HHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1149 -------RCQRRLLLTGTPLQNDLKE----------LWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1149 -------~a~~RLLLTGTPLQNnL~E----------LwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
...++|+|||||.+++..+ ||.+|+.- ..........+..++..|................
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~- 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH-
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH-
Confidence 2256999999998865433 33333321 1112233456666666554332111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000169 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (1953)
Q Consensus 1211 Eek~liI~RLhklLrP----------------------FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~ 1268 (1953)
.........++.++.. ++....+......+|... ....+|..+.....
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~----------~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICTE 547 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHHH
Confidence 1111112233333222 222222221222222211 11111111100000
Q ss_pred cccCchhHHhhhh----------------------cChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhc
Q 000169 1269 LRVDPEDEKRRVQ----------------------KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKS 1326 (1953)
Q Consensus 1269 l~ld~~~ek~~l~----------------------kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~ 1326 (1953)
. +........+. ............+...+..|...+..|. ..
T Consensus 548 ~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~~ 611 (936)
T 4a2w_A 548 H-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------NE 611 (936)
T ss_dssp H-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------CC
T ss_pred H-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------CC
Confidence 0 00000000000 0000000011111122223333332221 24
Q ss_pred ccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1327 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1327 SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
++|+..|..+|.... ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 789999999998864 56799999999999999999999987 5566667888999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1393 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1393 -~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+..+ |||+|+++++||||+.|++||+||+|||+..|+||+|| +|. +++.||.|++
T Consensus 692 ~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 692 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp --CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred cCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 5444 78999999999999999999999999999999999999 554 6666777654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=358.79 Aligned_cols=420 Identities=17% Similarity=0.183 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+...+. .+++|||||+ .|+.||..+|.++++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 7789999999999999999888876654322 2789999997 699999999999997
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cc-cccCccEEEcccccccCCchhHHHHH---hhh
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARD---LDR 1147 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L-~kikWd~VIIDEAHrLKN~~SKlsra---Lk~ 1147 (1953)
++.+..+.|+...+... .......+|+|+||+.+.+... .+ ...+|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~ 164 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPV---EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 164 (696)
T ss_dssp TTCCEEEECSSSCSSSCH---HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccH---HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHH
Confidence 68888888875433221 1122468999999999987643 23 44578999999999998765322221 111
Q ss_pred -c-----ccceeEEecccCCCCC-------HHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1148 -Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1148 -L-----~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF~----S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
+ ...++|+|||||..++ +..++.++..+....+. .......++..|.................
T Consensus 165 ~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~ 244 (696)
T 2ykg_A 165 KLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 244 (696)
T ss_dssp HHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH
Confidence 1 3467999999998544 45566666555544332 22334444444421110000000000000
Q ss_pred HHHHHHHHHHHHHh-----------------------hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000169 1211 EKKVIIIHRLHQIL-----------------------EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (1953)
Q Consensus 1211 Eek~liI~RLhklL-----------------------rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~ 1267 (1953)
.-......+..+. .++++++.+......+|.+.... ..-..++.....-.
T Consensus 245 -~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 245 -IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYTSHLR 317 (696)
T ss_dssp -HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHHHHHH
Confidence 0000001111111 11222222222222222221100 00001111000000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhh-----------------hhcccHH
Q 000169 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKL 1330 (1953)
Q Consensus 1268 ~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~L-----------------i~~SGKL 1330 (1953)
.......+... .........+...+..++... ........+ ...+.|+
T Consensus 318 -----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~ 382 (696)
T 2ykg_A 318 -----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 382 (696)
T ss_dssp -----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHH
T ss_pred -----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 00000000000 000000111111111111000 000000000 0246799
Q ss_pred HHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcC----CeEEeecC--------CCCHHHHHHHHHHhhc-CCC
Q 000169 1331 WILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDS 1395 (1953)
Q Consensus 1331 elLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rG----ikylRLDG--------sTs~eeRqeaIerFNs-~ds 1395 (1953)
..|..+|.... ..+.++||||+++.+++.|.++|...| +++..++| +++.++|.+++++|+. +..
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~ 462 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 462 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCc
Confidence 99999998764 357899999999999999999999998 89999955 9999999999999996 555
Q ss_pred CccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
. +|++|+++++|||++++++||+||+|||+..|+||+|| +|. +...++.|++
T Consensus 463 ~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 463 N---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp S---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred c---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 5 58999999999999999999999999999999999999 886 4455566544
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=345.37 Aligned_cols=337 Identities=13% Similarity=0.136 Sum_probs=244.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw--aPsl 1076 (1953)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||. .|+.||.++|.+| ++..
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4679999999999999998888776652 23599999997 5889999999999 5667
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeEE
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RLL 1155 (1953)
.+..+.|....... .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 187 ~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 187 MIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (510)
T ss_dssp GEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEE
T ss_pred ceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEE
Confidence 78777776443321 245789999999998876332 2247899999999999863 344555666 5678999
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkD 1235 (1953)
||||| .+...++|++..++.+.++.. + .. + ..
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~---~---~~-------------------------- 289 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TS---K---LM-------------------------- 289 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC-----------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEee----------C-----HH---H---Hh--------------------------
Confidence 99999 555556777776665543210 0 00 0 00
Q ss_pred hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 000169 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (1953)
Q Consensus 1236 VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l 1315 (1953)
-...+++.....+.+.++........ + ..+ .. .+..+
T Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~----------- 326 (510)
T 2oca_A 290 EDGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKII----------- 326 (510)
T ss_dssp ------CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHH-----------
T ss_pred hCCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHH-----------
Confidence 00135666666677776654331100 0 000 00 01111
Q ss_pred cccchhhhhhcccHHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCC
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~d 1394 (1953)
+....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||+++.++|.++++.|++++
T Consensus 327 --------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~ 397 (510)
T 2oca_A 327 --------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK 397 (510)
T ss_dssp --------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC
T ss_pred --------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 11223555566666665444 556777777 88888899999999899999999999999999999999755
Q ss_pred CCccEEEEec-cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc-eEEEEEEeh
Q 000169 1395 SDCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (1953)
Q Consensus 1395 s~ifVfLLST-rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (1953)
.. +|++| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++.
T Consensus 398 ~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 398 GI---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp SC---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred CC---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 44 67777 99999999999999999999999999999999999999997 688888754
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=354.99 Aligned_cols=395 Identities=17% Similarity=0.228 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~QW-~~Ef~Kwa 1073 (1953)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999986 67899999999999999999887766432 3347899999975 88999 99999999
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCCchh---HH
Q 000169 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VL 1141 (1953)
Q Consensus 1074 Ps-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN~~S---Kl 1141 (1953)
+. +.+..+.|........ .......+|+|+||+.+.... ..+....|++|||||||++.+... ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 87 8899888876543221 122367899999999998643 234456899999999999854221 11
Q ss_pred HHHhhh-c-------------ccceeEEecccCCCCC-------HHHHHHHHhhhcc-ccc---CChHHHHhhhcCCccc
Q 000169 1142 ARDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQK 1196 (1953)
Q Consensus 1142 sraLk~-L-------------~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP-~iF---~S~k~F~e~F~kPf~k 1196 (1953)
...+.. + ....+|+|||||..++ ..++..++..+.+ .+. .....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 112211 1 4457999999999863 3344445555555 222 1224455555444322
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH-H---HHc----cC
Q 000169 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-I---KAT----GT 1268 (1953)
Q Consensus 1197 ~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~-I---~~~----~~ 1268 (1953)
............ ...+..+...+..++ ++-+.. .+. ...|.. + ... ..
T Consensus 239 ~~~~~~~~~~~~-----~~~l~~l~~~i~~~~----------~~~~~~------~~g---~~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 239 FAIADATREDPF-----KEKLLEIMTRIQTYC----------QMSPMS------DFG---TQPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp EEEEC-----CH-----HHHHHHHHHHHHHHH----------TCCCCS------CSS---SHHHHHHHHHHHHHHHHHTC
T ss_pred EEEcccccCChH-----HHHHHHHHHHHHHHh----------ccCcch------hcc---chHHHHHHHHHHHHHHHhhh
Confidence 111000000000 001111211111111 010000 000 001110 0 000 00
Q ss_pred cccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHhcC
Q 000169 1269 LRVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCN 1306 (1953)
Q Consensus 1269 l~ld~~~ek~~l~------kn~~~~ak~~~sL~nilm------------------------------------qLRKiCN 1306 (1953)
............. .........+..+...+. .|..++.
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000000000011111111 1111111
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc---CCeeEEeechhHHHHHHHHHHHHc------CCeEEeecCC
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT 1377 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat---GhKVLIFSQft~~LDILed~L~~r------GikylRLDGs 1377 (1953)
.+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||+
T Consensus 375 ~~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 375 NPE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp CCC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred cCC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 110 1345777777777765433 789999999999999999999987 9999999999
Q ss_pred --------CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1378 --------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1378 --------Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
++..+|.+++++|+.++.+ ||++|+++++|||++.+++||+||+|||+..|+|++|||+|-|
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999976555 6899999999999999999999999999999999999986655
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=311.07 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=225.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .|+.||..++.+|. |+
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998876 67899999999999999877776654323344589999997 58899999999986 57
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh---HHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~- 1149 (1953)
+.+.++.|........ ........+|+|+||+.+.... ..+...+|++|||||||++.+... .+...+..+.
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888875543221 1233456799999999997643 223445799999999999976322 1222222332
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
...+++|||||-.. ..++. ..++..|........
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~~---------------------------- 217 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDDE---------------------------- 217 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCCC----------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecCc----------------------------
Confidence 45689999998432 11110 111111110000000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
....+.......+.+
T Consensus 218 ------~~~~~~~~~~~~~~~----------------------------------------------------------- 232 (391)
T 1xti_A 218 ------TKLTLHGLQQYYVKL----------------------------------------------------------- 232 (391)
T ss_dssp ------CCCCCTTCEEEEEEC-----------------------------------------------------------
T ss_pred ------cccCcccceEEEEEc-----------------------------------------------------------
Confidence 000000000111110
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
....|...|..++... .+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.
T Consensus 233 ---------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 233 ---------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp ---------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ---------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1123444555555543 67899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
|++++.. +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.++.-
T Consensus 296 f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 296 FKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HHTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred HhcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9976555 78999999999999999999999999999999999999999998888877654
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=344.84 Aligned_cols=354 Identities=15% Similarity=0.152 Sum_probs=218.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEec-hHHHHHHH-HH
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVP-NAVLVNWK-SE 1068 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------g~~GP~LIVVP-~SLL~QW~-~E 1068 (1953)
+..|||||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3489999999999999876654 5589999999999999999888887532 15678999999 55889999 78
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh------hcccccCccEEEcccccccCCch-hHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVL 1141 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~------s~L~kikWd~VIIDEAHrLKN~~-SKl 1141 (1953)
|..|.+.+. .+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. +.+
T Consensus 256 ~~~~~~~~~--~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDARH--KIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSEE--ECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhhh--hhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 887765322 22221 12346799999999987642 33445579999999999998653 344
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
...+..+...++|+|||||..+...+++.++. .++.... +.
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~ 363 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LR 363 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HH
Confidence 45556677788999999999887766555432 1111110 00
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
..+ .+ ..+++.....+.+....................+ ..
T Consensus 364 ~~i---------~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------ 404 (590)
T 3h1t_A 364 QGI---------DD--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI----------PD------------------ 404 (590)
T ss_dssp HHH---------HH--TSSCCEEEEEEEETTCC-----------------------------------------------
T ss_pred HHh---------hC--CccCCcEEEEeeeeeecccccccccccccccccc----------cc------------------
Confidence 000 00 1233333333333322111111000000000000 00
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH---hcCCeeEEeechhHHHHHHHHHHHHcCCe--------
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1370 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk---atGhKVLIFSQft~~LDILed~L~~rGik-------- 1370 (1953)
..+........+....+...+.+.|..+. ..+.|+||||+.+.+++.|.+.|...+..
T Consensus 405 -----------~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 405 -----------GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred -----------ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 00000000111111222333333332221 34689999999999999999999876543
Q ss_pred EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCC---cceE
Q 000169 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREV 1447 (1953)
Q Consensus 1371 ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQ---KKeV 1447 (1953)
+..++|.++ ++|..++++|++++.++.++|++|+++++|||++.+++||+|+++||+..|+|++||++|+|. +..+
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~ 552 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWF 552 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCE
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEE
Confidence 678999986 479999999998887888999999999999999999999999999999999999999999995 6678
Q ss_pred EEEEEeh
Q 000169 1448 KVIYMEA 1454 (1953)
Q Consensus 1448 ~VyrLvT 1454 (1953)
.||.++.
T Consensus 553 ~I~D~~g 559 (590)
T 3h1t_A 553 NIIDYTG 559 (590)
T ss_dssp EEEECSS
T ss_pred EEEecCC
Confidence 9999873
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=309.61 Aligned_cols=312 Identities=17% Similarity=0.186 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999886 677999999999999988777766543333455899999975 78899999999986 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh-HHHH-Hhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S-Klsr-aLk~L~-a~ 1151 (1953)
.+..+.|......... ......+|+|+|++.+.... ..+...+|++|||||||++.+... .... .+..+. ..
T Consensus 119 ~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 7777777665443321 22457899999999986543 223345789999999999876432 2222 222332 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++||||+-. .+..+ +..++..|+.....
T Consensus 196 ~~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~-------------------------------- 225 (400)
T 1s2m_A 196 QSLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM-------------------------------- 225 (400)
T ss_dssp EEEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC--------------------------------
T ss_pred eEEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec--------------------------------
Confidence 68999999621 11110 01111111100000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.. ...+........
T Consensus 226 --~~--~~~~~~~~~~~~-------------------------------------------------------------- 239 (400)
T 1s2m_A 226 --EE--LTLKGITQYYAF-------------------------------------------------------------- 239 (400)
T ss_dssp --SS--CBCTTEEEEEEE--------------------------------------------------------------
T ss_pred --cc--cccCCceeEEEE--------------------------------------------------------------
Confidence 00 000000000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
+....|+..|..++.. ..+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|+
T Consensus 240 ------------~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 305 (400)
T 1s2m_A 240 ------------VEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 305 (400)
T ss_dssp ------------CCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------echhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh
Confidence 0112355555566554 25679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++... +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.+++
T Consensus 306 ~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 306 QGKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp TTSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 76554 7899999999999999999999999999999999999999999887776654
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=305.48 Aligned_cols=307 Identities=20% Similarity=0.253 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. .+.++|++.+||+|||++++..+..++. .....++|||||.. |+.||.+++.++++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999998875 2357899999999999998877766553 23456899999975 78999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhhc-ccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L-~a~ 1151 (1953)
.+..+.|........ ......+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+ ...
T Consensus 104 ~v~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQI----KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CEEEECTTSCHHHHH----HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred eEEEEECCcchHHHH----hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 677777765443322 122368999999999876532 2334578999999999987644 2233334444 345
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.++|||||... +..++. .++..+..
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------ 205 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------ 205 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HHCCSEEE------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HHcCCCeE------------------------------------
Confidence 689999999321 111110 01100000
Q ss_pred HHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1232 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1232 lKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+....+... ...+.+
T Consensus 206 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 221 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV------------------------------------------------------------ 221 (367)
T ss_dssp ----EECCSSSSSEEEEEEC------------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe------------------------------------------------------------
Confidence 000000000 000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
....|+..|..++. ..+.++||||.....++.+.++|...|+.+..+||+++.++|..+++.|
T Consensus 222 --------------~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 222 --------------NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp --------------CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 01123344444333 5678999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++... +|++|+++++|+|++.+++||+||++||+..+.|++||++|.|++..|.++..
T Consensus 285 ~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 285 KQKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp HTTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred HcCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 976544 78999999999999999999999999999999999999999999988877653
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=306.81 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.+|.. .+
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999998877766553334557899999976 88999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~ 1151 (1953)
.+..+.|......... ......+|+|+||+.+.... ..+....|++|||||||++.+.. ..+...+..+. ..
T Consensus 135 ~~~~~~g~~~~~~~~~---~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIR---KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred EEEEEECCCCHHHHHH---HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 6667777654433221 22346799999999987543 23445579999999999987654 23334444443 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++||||-. ++..++. .++..|.....
T Consensus 212 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~--------------------------------- 240 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTN--------------KFMTDPIRILV--------------------------------- 240 (410)
T ss_dssp EEEEEESCCCH----HHHTTGG--------------GTCSSCEEECC---------------------------------
T ss_pred eEEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe---------------------------------
Confidence 68999999832 1111111 01111110000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
......++......+.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 258 (410)
T 2j0s_A 241 --KRDELTLEGIKQFFVAVE------------------------------------------------------------ 258 (410)
T ss_dssp --CGGGCSCTTEEEEEEEES------------------------------------------------------------
T ss_pred --cCccccCCCceEEEEEeC------------------------------------------------------------
Confidence 000000111111111111
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
....|+..|..++... ...++||||+....++.|.++|...|+.+..+||+++..+|..+++.|+
T Consensus 259 -------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 259 -------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp -------------STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred -------------cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 0012444555555543 3569999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++|++..|+|++||++|.|++..|.++.-
T Consensus 324 ~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 324 SGASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp HTSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 86655 78999999999999999999999999999999999999999998887766653
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=309.09 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.++|||.+++.+++. +.++|++.+||+|||++++..+...+......+++|||||.. |+.||.+++.+++. .+
T Consensus 62 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 799999999988886 677999999999999998777766554344566899999976 88999999999873 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ........+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+..+. ..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 138 SCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CEEECCCCTTHHHHH--HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEECCcchHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 666666655443332 1233467899999999987653 23444568999999999986433 34455555553 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++|||||-. ++..++. .++..+........
T Consensus 216 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~~~------------------------------ 247 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTK--------------KFMRDPIRILVKKE------------------------------ 247 (414)
T ss_dssp EEEEECSCCCH----HHHHHHT--------------TTCSSCEEECCCCC------------------------------
T ss_pred eEEEEEEecCH----HHHHHHH--------------HHcCCCEEEEecCC------------------------------
Confidence 68999999821 1111111 00111100000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
. ...+...... ..
T Consensus 248 ---~--~~~~~~~~~~--------------------------------------------------------------~~ 260 (414)
T 3eiq_A 248 ---E--LTLEGIRQFY--------------------------------------------------------------IN 260 (414)
T ss_dssp ---C--CCTTSCCEEE--------------------------------------------------------------EE
T ss_pred ---c--cCCCCceEEE--------------------------------------------------------------EE
Confidence 0 0000000000 00
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 261 -----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 261 -----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp -----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS
T ss_pred -----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH
Confidence 001123666666666543 5679999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.+++.
T Consensus 328 ~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 328 SGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp CC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred cCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 75544 79999999999999999999999999999999999999999998887766553
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=309.67 Aligned_cols=202 Identities=17% Similarity=0.208 Sum_probs=152.6
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-cc-
Q 000169 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SD- 1317 (1953)
Q Consensus 1240 LPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l-~d- 1317 (1953)
.|++.|+++.|.||+.|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111111112335688999999999999999985322 11
Q ss_pred ----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1318 ----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1318 ----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
...+.++..||||.+|+++|..+++.+|||||||||+.++|+|+++|..+|+.|+|+||++... +.+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cc
Confidence 1245678899999999999999999999999999999999999999999999999999996543 222 12
Q ss_pred CCCccEEEEeccccccccC-----CccCCeEEEcCCCCCchhH-Hhhhhccccc--CCcceEEEEEEeh
Q 000169 1394 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1454 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLN-----LQaADtVIifDppWNP~~d-~QAiGRAhRI--GQKKeV~VyrLvT 1454 (1953)
++.++|||+ |++||.|+| |.+||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 457888887 568888886 8999999999999999998 9999999999 7899999999987
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=295.73 Aligned_cols=313 Identities=15% Similarity=0.169 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||.. |+.||.+++.++.. .+
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 7999999999988752 2378899999999999998877766554344566899999976 88999999999874 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh--HHHHHhh-hcc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYR-C 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk-~L~-a 1150 (1953)
.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+... .....+. .+. .
T Consensus 105 ~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
T 3pey_A 105 TSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177 (395)
T ss_dssp CEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTT
T ss_pred eEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCC
Confidence 555555543322 12346899999999987653 233445799999999999865221 2222222 332 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...++|||||-. .+..++..+ +..+.... . .
T Consensus 178 ~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~-~----~-------------------------- 208 (395)
T 3pey_A 178 TQLVLFSATFAD----AVRQYAKKI--------------VPNANTLE-L----Q-------------------------- 208 (395)
T ss_dssp CEEEEEESCCCH----HHHHHHHHH--------------SCSCEEEC-C----C--------------------------
T ss_pred cEEEEEEecCCH----HHHHHHHHh--------------CCCCeEEE-c----c--------------------------
Confidence 468999999831 111111110 00000000 0 0
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
... ...+......+.+
T Consensus 209 --~~~--~~~~~~~~~~~~~------------------------------------------------------------ 224 (395)
T 3pey_A 209 --TNE--VNVDAIKQLYMDC------------------------------------------------------------ 224 (395)
T ss_dssp --GGG--CSCTTEEEEEEEC------------------------------------------------------------
T ss_pred --ccc--cccccccEEEEEc------------------------------------------------------------
Confidence 000 0000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
.....|+..|..++.. ..+.++||||+....++.+.++|...++.+..+||+++.++|..+++.|
T Consensus 225 -------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 225 -------------KNEADKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp -------------SSHHHHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 0012344555555443 2568999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCC------CchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW------NP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++... +|++|+++++|||++.+++||+||+|| |+..|+|++||++|.|++..+.++..
T Consensus 290 ~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 290 REGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp HTTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HCCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 976555 799999999999999999999999999 99999999999999998888777664
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=288.55 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=209.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.++.. +.++|++++||+|||++++..+... ..++|||||.. |+.||.+++.+|.+ +.
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887666432 45899999974 88999999999875 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a~- 1151 (1953)
.+..+.|........ ......+|+|+||+.+.+.. ..+...+|++|||||||++.+.. ..+...+..+...
T Consensus 86 ~~~~~~~~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQI----NRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CEEEECTTSCHHHHH----HHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cEEEEECCcchHHHH----hhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 777777765443221 12235899999999997643 23344578999999999986533 2333334444433
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++||||-.. +..++ ..++..+....
T Consensus 162 ~~~~~SAT~~~~----~~~~~--------------~~~~~~~~~~~---------------------------------- 189 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVV--------------KDFITNYEEIE---------------------------------- 189 (337)
T ss_dssp EEEEEESCCCHH----HHHHH--------------HHHSCSCEEEE----------------------------------
T ss_pred EEEEEeCcCCHH----HHHHH--------------HHhcCCceeee----------------------------------
Confidence 456789998321 11111 11111100000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.. ..++......+.+...
T Consensus 190 --~~--~~~~~~~~~~~~~~~~---------------------------------------------------------- 207 (337)
T 2z0m_A 190 --AC--IGLANVEHKFVHVKDD---------------------------------------------------------- 207 (337)
T ss_dssp --CS--GGGGGEEEEEEECSSS----------------------------------------------------------
T ss_pred --cc--cccCCceEEEEEeChH----------------------------------------------------------
Confidence 00 0000000111111000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
.......+. ...+.++||||+....++.+.+.|. .+..+||+++..+|.+++++|+
T Consensus 208 ------------------~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH
Confidence 000001111 1357889999999999999998886 6788999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|++..|.+|..
T Consensus 264 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 264 EGEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TTSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 76555 78999999999999999999999999999999999999999999988888765
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=299.39 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-----~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
+++|+|..++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||.+++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 788999999999999988776655443322 245799999986 8899999999998
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhh
Q 000169 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (1953)
Q Consensus 1074 P--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~ 1147 (1953)
. .+++.+++|+....... .......+|+|+|++.+.... ..+...++++|||||||++.+.. ..+...+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred ccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 4 46666666665443222 122357899999999997653 23344578999999999987643 233444443
Q ss_pred c---ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1148 Y---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1148 L---~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
+ .....+++|||+- .++..+.... +..+.....
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~~-------------------------- 266 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVAI-------------------------- 266 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEEE--------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEEe--------------------------
Confidence 3 3456899999972 1222111100 000000000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
..+....+.....++.|
T Consensus 267 ---------~~~~~~~~~i~~~~~~~------------------------------------------------------ 283 (434)
T 2db3_A 267 ---------GIVGGACSDVKQTIYEV------------------------------------------------------ 283 (434)
T ss_dssp ---------SSTTCCCTTEEEEEEEC------------------------------------------------------
T ss_pred ---------ccccccccccceEEEEe------------------------------------------------------
Confidence 00000000000111111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|.
T Consensus 284 --------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 284 --------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp --------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 112244444444443 445699999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.++++|+++... +|++|+++++|||++.+++||+||+||++..|+||+||++|.|++..+.+|+
T Consensus 341 ~~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 341 QALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999999976655 7999999999999999999999999999999999999999999988877664
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=303.69 Aligned_cols=313 Identities=15% Similarity=0.184 Sum_probs=116.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||. .|+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999999887 67899999999999999776665554333455689999997 488999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ......+|+|+|++.+.... ..+...+|++|||||||++.+. ...+...+..+. ..
T Consensus 119 ~~~~~~g~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 119 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CEEEECSSCCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCCchHHHH----hhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 777777765443221 11236899999999987653 2344457999999999998543 233444444443 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
.+++|||||-. ++..++ ..++..|+.
T Consensus 195 ~~i~~SAT~~~----~~~~~~--------------~~~~~~~~~------------------------------------ 220 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVT--------------TKFMRNPVR------------------------------------ 220 (394)
T ss_dssp EEEEECSSCCH----HHHHHH--------------HHHCCSCEE------------------------------------
T ss_pred eEEEEEEecCH----HHHHHH--------------HHhcCCCeE------------------------------------
Confidence 68999999832 111110 111111100
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
. .+.-.. .. ...+ . .....+
T Consensus 221 --------------~--~~~~~~--~~-~~~~-------------------------------~----~~~~~~------ 240 (394)
T 1fuu_A 221 --------------I--LVKKDE--LT-LEGI-------------------------------K----QFYVNV------ 240 (394)
T ss_dssp --------------E--EECC-----------------------------------------------------------
T ss_pred --------------E--EecCcc--cc-CCCc-------------------------------e----EEEEEc------
Confidence 0 000000 00 0000 0 000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
.....|...|..++... .+.++||||.....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 241 ------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 306 (394)
T 1fuu_A 241 ------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 00012444555555543 4579999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++... +|++|+++++|||++.+++||+||++|++..|.|++||++|.|++..|.+++
T Consensus 307 ~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 307 SGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 75544 7899999999999999999999999999999999999999999888776654
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=289.31 Aligned_cols=314 Identities=22% Similarity=0.264 Sum_probs=217.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA- 1060 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~------------------~GP~LIVVP~S- 1060 (1953)
.|+|+|.+++..+.. +.+.|++.+||+|||++++..+...+...+. ...+|||||..
T Consensus 37 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 799999999987765 7789999999999999876655543322221 24689999975
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC
Q 000169 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1061 LL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN 1136 (1953)
|+.||.+++.+++. ++.+..+.|+....... .......+|+|+|++.+.... ..+....+++|||||||++..
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI---RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH---HHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 88899999999874 57777777765443322 122346899999999997653 223445789999999999864
Q ss_pred ch--hHHHHHhhh--cc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1137 RE--SVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1137 ~~--SKlsraLk~--L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
.. ..+...+.. +. ....+++|||+-. ++..++. .++..+......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~---------- 241 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG---------- 241 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC----------
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC----------
Confidence 32 223333332 11 3458999999822 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~a 1288 (1953)
.. ...++.. ..++.+.
T Consensus 242 -------------------------~~-~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 -------------------------RV-GSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred -------------------------CC-CCCccCceEEEEEec-------------------------------------
Confidence 00 0001111 1111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC
Q 000169 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (1953)
Q Consensus 1289 k~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG 1368 (1953)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112334444444432 357799999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1369 ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+.+..+||+++.++|..+++.|+++... +|++|+++++|||++.+++||+||++|++..|+|++||++|.|+...|.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999986655 7999999999999999999999999999999999999999999887776
Q ss_pred EEEE
Q 000169 1449 VIYM 1452 (1953)
Q Consensus 1449 VyrL 1452 (1953)
+++-
T Consensus 378 ~~~~ 381 (417)
T 2i4i_A 378 SFFN 381 (417)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=285.38 Aligned_cols=314 Identities=17% Similarity=0.180 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
.++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||.. |+.||.+.+.++. +.
T Consensus 47 ~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 7999999999888752 3478899999999999998776665544344455899999977 7788888877765 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCC--chh-HHHHHhhhcc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD--RES-VLARDLDRYR 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN--~~S-KlsraLk~L~ 1149 (1953)
+.+....+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ... .....+..+.
T Consensus 125 ~~~~~~~~~~~~~~------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 125 LKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp CCEEEECTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred ceEEEeecCcchhh------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 77777766543321 12345799999999997653 233345799999999999854 222 2222333333
Q ss_pred -cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1150 -a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
....+++||||-. +++.++... +..+..... .
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~------------------------ 231 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K------------------------ 231 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C------------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c------------------------
Confidence 3468999999832 222211111 100000000 0
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
.. ...++......+.+
T Consensus 232 -----~~-~~~~~~~~~~~~~~---------------------------------------------------------- 247 (412)
T 3fht_A 232 -----RE-EETLDTIKQYYVLC---------------------------------------------------------- 247 (412)
T ss_dssp -----GG-GSSCTTEEEEEEEC----------------------------------------------------------
T ss_pred -----cc-cccccCceEEEEEc----------------------------------------------------------
Confidence 00 00000000000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
.....|+..|..++.. ..+.++||||+....++.|.++|...++.+..+||+++.++|..+++
T Consensus 248 ---------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 248 ---------------SSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp ---------------SSHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Confidence 0012355556666554 35679999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCc------hhHHhhhhcccccCCcceEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP------~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.|+.+... +|++|+++++|||++++++||+||+||++ ..|+|++||++|.|+...+.++.-
T Consensus 311 ~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 311 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp HHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 99976555 79999999999999999999999999876 699999999999998877766553
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=278.02 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-sl 1076 (1953)
.+++|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 3689999999988775 66899999999999996665555443 3456899999975 88999999999986 77
Q ss_pred eEEEEecchhhHhH-HHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc-------------hhH-H
Q 000169 1077 SCIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR-------------ESV-L 1141 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~-l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~-------------~SK-l 1141 (1953)
++..++|......+ .....+..+.++|+|+|++.+......+...++++|||||||++... ... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887654211 11122334568999999999987766666678999999999987321 112 2
Q ss_pred HHHhhhc------------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1142 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1142 sraLk~L------------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...+..+ .....+++||||....+...+ +..++......
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~~------------- 223 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------------- 223 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSSC-------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcCc-------------
Confidence 2333333 345689999997555422111 00000000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak 1289 (1953)
....+......+.
T Consensus 224 ---------------------------~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 224 ---------------------------LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp ---------------------------CCCCCCSEEEEEE----------------------------------------
T ss_pred ---------------------------cccccccchheee----------------------------------------
Confidence 0000111111000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
...|...|..+|.. .+.++||||+....++.|..+|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444555554 468999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCC--CCchhHHhhhhccccc
Q 000169 1370 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1370 kyl-RLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDpp--WNP~~d~QAiGRAhRI 1441 (1953)
.+. .+||. +|. ++.|+++..+ +|++ |+++++|||++. +++||+||+| +++..|+|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 9999976544 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000169 1442 GQK--REVKVIYME 1453 (1953)
Q Consensus 1442 GQK--KeV~VyrLv 1453 (1953)
|+. +.-.++.|+
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 974 344444443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=291.39 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.++|+|.+++..++. +.++|+..+||+|||+.++..+. . ..+.+|||+|.. |+.+|...+.++ ++.+
T Consensus 25 ~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~----~~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--L----LNGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--H----SSSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--H----hCCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 799999999999885 67899999999999987754443 1 136899999975 888899999986 4566
Q ss_pred EEEecchhhHhH-HHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh---HHHHH----hhhc
Q 000169 1079 IYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARD----LDRY 1148 (1953)
Q Consensus 1079 vvy~Gs~deRk~-l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S---Klsra----Lk~L 1148 (1953)
..+.+....... ........+.++|+++|++.+... ...+...++.+|||||||.+..... ..+.. +..+
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~ 172 (523)
T 1oyw_A 93 ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC
Confidence 666665432211 111234456789999999999643 2345557899999999999965331 12222 2334
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
....+++|||||......++...+.+-.|.++.. .+
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~---------------------------------- 208 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF---------------------------------- 208 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC----------------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC----------------------------------
Confidence 5567899999996555455554443322211100 00
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
..|.....++.
T Consensus 209 ----------~r~~l~~~v~~----------------------------------------------------------- 219 (523)
T 1oyw_A 209 ----------DRPNIRYMLME----------------------------------------------------------- 219 (523)
T ss_dssp ----------CCTTEEEEEEE-----------------------------------------------------------
T ss_pred ----------CCCceEEEEEe-----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
...++..|..++.. ..+.++||||..+..++.+.++|...|+.+..+||+++.++|..+++
T Consensus 220 -----------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 280 (523)
T 1oyw_A 220 -----------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280 (523)
T ss_dssp -----------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 01122233333332 25779999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 281 ~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 281 KFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 99986655 7899999999999999999999999999999999999999999988877655
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=287.53 Aligned_cols=324 Identities=18% Similarity=0.218 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kwa- 1073 (1953)
.|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988772 13567899999999999998777666554332 234789999975 8889999999874
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHH
Q 000169 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1074 -----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
+.+.+....|......... ......++|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hcccccceEEEEEECCccHHHHHH--HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 4566777777655443321 23345789999999999764322 223468999999999987543 12222
Q ss_pred Hhhhc---c-----cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000169 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (1953)
Q Consensus 1144 aLk~L---~-----a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~l 1215 (1953)
.+..+ . ....++||||+-.. +. .++..+ +..+....
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~---~~~~~~--------------l~~~~~~~------------------ 242 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDDK-VQ---KLANNI--------------MNKKECLF------------------ 242 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH-HH---HHTTTT--------------CCSSEEEE------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCChH-HH---HHHHHH--------------cCCCceEE------------------
Confidence 22222 1 34689999997321 11 111100 00000000
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhcCCCCceEE-EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000169 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSI-VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (1953)
Q Consensus 1216 iI~RLhklLrPFmLRRlKkDVekdLPpKvE~-vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL 1294 (1953)
+.. .............. .+.+.-
T Consensus 243 -------------~~~-~~~~~~~~~~~i~~~~~~~~~------------------------------------------ 266 (579)
T 3sqw_A 243 -------------LDT-VDKNEPEAHERIDQSVVISEK------------------------------------------ 266 (579)
T ss_dssp -------------EES-SCSSSCSSCTTEEEEEEEESS------------------------------------------
T ss_pred -------------Eee-cCccccccccccceEEEEecc------------------------------------------
Confidence 000 00000000000110 111100
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc---CC
Q 000169 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r---Gi 1369 (1953)
....+...+..++..+. ..+.++||||.....++.+.+.|... ++
T Consensus 267 ------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~ 316 (579)
T 3sqw_A 267 ------------------------------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 316 (579)
T ss_dssp ------------------------------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTS
T ss_pred ------------------------------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCC
Confidence 00011222333333332 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+||+++..+|..++++|+.+... +|++|+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+
T Consensus 317 ~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 317 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred cEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE
Confidence 999999999999999999999975544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000169 1450 IYM 1452 (1953)
Q Consensus 1450 yrL 1452 (1953)
++.
T Consensus 394 ~~~ 396 (579)
T 3sqw_A 394 FIC 396 (579)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=282.85 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~S-LL~QW~~Ef~Kwa- 1073 (1953)
.|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988772 135678999999999999987776665543321 24789999975 8889999999863
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHH
Q 000169 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1074 -----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
+.+.+..+.|........ ........+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHHH--HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 345566666665443322 123345789999999998754322 122358999999999986543 12222
Q ss_pred Hhhhc---c-----cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000169 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (1953)
Q Consensus 1144 aLk~L---~-----a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~l 1215 (1953)
.+..+ . ....++||||+-.. +..++..+. ..+.......
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~~----v~~~~~~~~--------------~~~~~~~~~~--------------- 296 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDDK----VQKLANNIM--------------NKKECLFLDT--------------- 296 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH----HHHHTTTTC--------------CSSEEEEEES---------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCHH----HHHHHHHhc--------------CCCceEEEec---------------
Confidence 22222 1 33589999997321 111111100 0000000000
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000169 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (1953)
Q Consensus 1216 iI~RLhklLrPFmLRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL 1294 (1953)
............. ..+.+...
T Consensus 297 -----------------~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 318 (563)
T 3i5x_A 297 -----------------VDKNEPEAHERIDQSVVISEKF----------------------------------------- 318 (563)
T ss_dssp -----------------SCSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -----------------cCCCCccccccCceEEEECchh-----------------------------------------
Confidence 0000000000011 11111000
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc---CC
Q 000169 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r---Gi 1369 (1953)
.......+..++..+. ..+.++||||.....++.+.++|... ++
T Consensus 319 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~ 367 (563)
T 3i5x_A 319 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 367 (563)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCc
Confidence 0001112222222222 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+||+++..+|..+++.|+.+... +|++|+++++|||++.+++||+||+|+++..|+|++||++|.|....+.+
T Consensus 368 ~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 444 (563)
T 3i5x_A 368 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 444 (563)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEE
Confidence 999999999999999999999986544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000169 1450 IYM 1452 (1953)
Q Consensus 1450 yrL 1452 (1953)
++.
T Consensus 445 ~~~ 447 (563)
T 3i5x_A 445 FIC 447 (563)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=288.39 Aligned_cols=308 Identities=16% Similarity=0.130 Sum_probs=215.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslk 1077 (1953)
..+||||.+++..++. +.++|+..+||+|||+.++..+.. ..+.+|||+|. +|+.+|...+.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999998886 778999999999999877555432 24689999997 4888999999998 677
Q ss_pred EEEEecchhhH--hHHHHHHH--hhccccEEEEeHHHHHhh---hh----cccccCccEEEcccccccCCch-------h
Q 000169 1078 CIYYVGAKDQR--SRLFSQEV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------S 1139 (1953)
Q Consensus 1078 Vvvy~Gs~deR--k~l~~qei--~~~~fdVVITTYEsL~kd---~s----~L~kikWd~VIIDEAHrLKN~~-------S 1139 (1953)
+..+.|..... ..... .. ....++|+|+|++.+... .. .+...++.+|||||||.+.... .
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 77777654322 22111 12 346789999999988532 11 2223478999999999986432 1
Q ss_pred HHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
.+......+....+++|||||......++...|.+-.+..+.. .
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~-------------------------- 233 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S-------------------------- 233 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C--------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C--------------------------
Confidence 2222223445667999999995433333333222111100000 0
Q ss_pred HHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
...|.....+....
T Consensus 234 ------------------~~r~nl~~~v~~~~------------------------------------------------ 247 (591)
T 2v1x_A 234 ------------------FNRPNLYYEVRQKP------------------------------------------------ 247 (591)
T ss_dssp ------------------CCCTTEEEEEEECC------------------------------------------------
T ss_pred ------------------CCCcccEEEEEeCC------------------------------------------------
Confidence 00011111110000
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCC
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGikylRLDGs 1377 (1953)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||+
T Consensus 248 ---------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 248 ---------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp ---------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 001111222222222 257899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.++|..++++|..+... +|++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++
T Consensus 301 l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 9999999999999976655 7999999999999999999999999999999999999999999988877765
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=301.51 Aligned_cols=307 Identities=18% Similarity=0.228 Sum_probs=218.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+++|||.+++.+++.....+. ++||+++||+|||++++..+..... ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998666555 7899999999999998755544432 335899999987 778999999999875
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc-
Q 000169 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a- 1150 (1953)
+.+.++.+.. ..+...+ .....+..+|+|+|++.+.++ +.-.+|++|||||+|++.. .....+..+..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRAN 751 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcCC
Confidence 5666666533 2222222 234456799999999988643 3345789999999999743 34455555544
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.++|+|||||+.+.+...+. .+..+.
T Consensus 752 ~~vl~lSATp~p~~l~~~~~--~~~~~~---------------------------------------------------- 777 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMS--GMRDLS---------------------------------------------------- 777 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHT--TTSEEE----------------------------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHh--cCCCce----------------------------------------------------
Confidence 46899999997653221110 000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+. ..|+.....+..
T Consensus 778 -----~i-~~~~~~r~~i~~------------------------------------------------------------ 791 (1151)
T 2eyq_A 778 -----II-ATPPARRLAVKT------------------------------------------------------------ 791 (1151)
T ss_dssp -----EC-CCCCCBCBCEEE------------------------------------------------------------
T ss_pred -----EE-ecCCCCccccEE------------------------------------------------------------
Confidence 00 000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIe 1388 (1953)
.+....+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.++++
T Consensus 792 ------------~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~ 858 (1151)
T 2eyq_A 792 ------------FVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 858 (1151)
T ss_dssp ------------EEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHH
T ss_pred ------------EEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 000001112222333333 36789999999999999999999988 899999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCC-CCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp-pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+|+++..+ +|++|.++++|||++++++||++++ .|++..+.|++||++|.|++..|.+++
T Consensus 859 ~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 859 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 99976555 7999999999999999999999999 589999999999999999877775554
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=284.35 Aligned_cols=314 Identities=18% Similarity=0.213 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---aP 1074 (1953)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. |+.||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999988875 23467899999999999998766655443333444799999987 677776665554 56
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCc--hh-HHHHHhhhc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR--ES-VLARDLDRY 1148 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~--~S-KlsraLk~L 1148 (1953)
.+.+.+..+...... ......+|+|+|++.+.... ..+...++++|||||||++... .. .....+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCccccc------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 777777766543221 11335689999999997654 2333457899999999998542 12 222233333
Q ss_pred c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
. ....+++||||-. +++.+...+.
T Consensus 265 ~~~~~~i~~SAT~~~----~~~~~~~~~~--------------------------------------------------- 289 (479)
T 3fmp_B 265 PRNCQMLLFSATFED----SVWKFAQKVV--------------------------------------------------- 289 (479)
T ss_dssp CTTSEEEEEESCCCH----HHHHHHHHHS---------------------------------------------------
T ss_pred CccceEEEEeCCCCH----HHHHHHHHHc---------------------------------------------------
Confidence 3 3468999999832 2222221111
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
|......+. ...... ..+ .+.-..|+
T Consensus 290 -------------~~~~~i~~~----~~~~~~-~~~-----------------------------------~~~~~~~~- 315 (479)
T 3fmp_B 290 -------------PDPNVIKLK----REEETL-DTI-----------------------------------KQYYVLCS- 315 (479)
T ss_dssp -------------SSEEEEEEC----------------------------------------------------------
T ss_pred -------------CCCeEEecc----ccccCc-CCc-----------------------------------eEEEEEeC-
Confidence 111100000 000000 000 00000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
....|+..|..++... .+.++||||.....++.|...|...++.+..+||+++..+|..++
T Consensus 316 -----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 316 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 0011223333333322 346899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCc------hhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP------~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|+.+... +|++|+++++|||++.+++||+||+||++ ..|+|++||++|.|....|.+++
T Consensus 377 ~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 377 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999976555 79999999999999999999999999876 69999999999999887776654
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=277.21 Aligned_cols=357 Identities=18% Similarity=0.110 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+++|||+|. .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999999876 678999999999999998766655543 23689999997 588899999999987
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+.++.|..... ...+|+|+|++.+.... ......+|++|||||+|++.+. ...+...+..+. ..
T Consensus 155 ~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 566677754321 25689999999987542 1222347899999999999765 233334444554 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.|+||||+- +..++..++..+. ..+....
T Consensus 225 ~il~LSATi~--n~~e~a~~l~~~~--------------~~~~~vi---------------------------------- 254 (1010)
T 2xgj_A 225 RYVFLSATIP--NAMEFAEWICKIH--------------SQPCHIV---------------------------------- 254 (1010)
T ss_dssp EEEEEECCCT--THHHHHHHHHHHH--------------TSCEEEE----------------------------------
T ss_pred eEEEEcCCCC--CHHHHHHHHHhhc--------------CCCeEEE----------------------------------
Confidence 6899999952 2333322222110 0000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH-hcCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK-TCNHPLL 1310 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK-iCNHP~L 1310 (1953)
....-|......+...-.. .+| ..++.. ..+....+... +..+.. ....+.-
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~---~~~--------~~~~~~---------~~~~~~~~~~~---~~~l~~~~~~~~~~ 307 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD---GIY--------LVVDEK---------STFREENFQKA---MASISNQIGDDPNS 307 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS---CCE--------EEECTT---------CCBCHHHHHHH---HHTCC---------
T ss_pred ----ecCCCcccceEEEEecCCc---cee--------eeeccc---------cccchHHHHHH---HHHHhhhhcccccc
Confidence 0001111111111110000 000 000000 00000000000 000000 0000000
Q ss_pred CCCCccccchhhhhhc-cc-HHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCe-----------------
Q 000169 1311 NYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------------- 1370 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~-SG-KLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGik----------------- 1370 (1953)
..+ ............ .+ ....+..++..+... +.++||||..+..++.+...|...++.
T Consensus 308 ~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 308 TDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 000 000000000000 00 022344455555444 458999999999999999888765442
Q ss_pred ----------------------EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cCC
Q 000169 1371 ----------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDP 1424 (1953)
Q Consensus 1371 ----------------------ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fDp 1424 (1953)
+..+||+++..+|..+++.|+.+..+ +|++|.++++|||++++++||. ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 67799999999999999999976655 7999999999999999999999 999
Q ss_pred ----CCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1425 ----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1425 ----pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
||++..|.|++||++|.|+.....+|.+.+
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 999999999999999999976766766654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=282.30 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
+|+++|.+++..+..-...+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |+.||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999988754433 478999999999999998877766642 25899999986 78899999999986
Q ss_pred CCeEEEEecchhhHh--HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh-cccc
Q 000169 1075 SVSCIYYVGAKDQRS--RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk--~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~a~ 1151 (1953)
++++.+++|...... ..+ ..+..+..+|+|+|++.+... +.-.++++|||||+|++.... ...+.. ....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~ 517 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMV 517 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred CceEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCC
Confidence 578888888654332 222 234456799999999988543 334578999999999983221 111221 2345
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.|+|||||+...+... .+ +. +.
T Consensus 518 ~vL~mSATp~p~tl~~~----~~------g~-------~~---------------------------------------- 540 (780)
T 1gm5_A 518 DTLVMSATPIPRSMALA----FY------GD-------LD---------------------------------------- 540 (780)
T ss_dssp CEEEEESSCCCHHHHHH----HT------CC-------SS----------------------------------------
T ss_pred CEEEEeCCCCHHHHHHH----Hh------CC-------cc----------------------------------------
Confidence 78999999965432211 00 00 00
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
..+...+|+....+...-.
T Consensus 541 --~s~i~~~p~~r~~i~~~~~----------------------------------------------------------- 559 (780)
T 1gm5_A 541 --VTVIDEMPPGRKEVQTMLV----------------------------------------------------------- 559 (780)
T ss_dssp --CEEECCCCSSCCCCEECCC-----------------------------------------------------------
T ss_pred --eeeeeccCCCCcceEEEEe-----------------------------------------------------------
Confidence 0001112221100000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh--------HHHHHHHHHHHH---cCCeEEeecCCCCH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW---RQLVYRRIDGTTSL 1380 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft--------~~LDILed~L~~---rGikylRLDGsTs~ 1380 (1953)
...+...+...+.+....+++++|||... ..++.+.+.|.. .++.+..+||+++.
T Consensus 560 --------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~ 625 (780)
T 1gm5_A 560 --------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQ 625 (780)
T ss_dssp --------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCC
T ss_pred --------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCH
Confidence 00011112222333335677888888754 345667777776 47889999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++|..++++|+++..+ +|++|+++++|||++++++||++|+++ +...+.|++||++|.|+...|.+++
T Consensus 626 ~eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 626 EEKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp SCSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999999999976655 799999999999999999999999995 7899999999999999888776654
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=262.62 Aligned_cols=315 Identities=16% Similarity=0.125 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+++|||+|.. ++.+|..++.+|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999988543 778999999999999999766655443 246899999987 88899999976654 578
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhc----c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----R 1149 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L----~ 1149 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+ .
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcchh------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 8888886443221 124789999999988654221 1123678999999999865 222233333333 3
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.++||||+- +..+ |.+|+..+....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~-------------------------------- 199 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVS-------------------------------- 199 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEEC--------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccC--------------------------------
Confidence 457899999973 2333 333333211000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
..-|-.....+...- ....... . . .
T Consensus 200 --------~~r~~~l~~~~~~~~---------------~~~~~~~-~-~---~--------------------------- 224 (702)
T 2p6r_A 200 --------DWRPVPLVEGVLCEG---------------TLELFDG-A-F---S--------------------------- 224 (702)
T ss_dssp --------CCCSSCEEEEEECSS---------------EEEEEET-T-E---E---------------------------
T ss_pred --------CCCCccceEEEeeCC---------------eeeccCc-c-h---h---------------------------
Confidence 000111111111000 0000000 0 0 0
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----------------------
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r---------------------- 1367 (1953)
. ...-.+... +.++...+.++||||.....++.+...|...
T Consensus 225 ----~---------~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~ 287 (702)
T 2p6r_A 225 ----T---------SRRVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM 287 (702)
T ss_dssp ----E---------EEECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHH
T ss_pred ----h---------hhhhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccc
Confidence 0 000002222 2223346889999999999988888877643
Q ss_pred --------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC---CCCCchhHH
Q 000169 1368 --------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEE 1432 (1953)
Q Consensus 1368 --------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD---ppWNP~~d~ 1432 (1953)
++.+..+||+++.++|..+.+.|..+... +|++|.++++|||++++++||. || .|+++..+.
T Consensus 288 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 288 SRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred cHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 13466799999999999999999976554 7999999999999999999998 77 789999999
Q ss_pred hhhhcccccCCcceEEEEEEeh
Q 000169 1433 QAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|++|||+|.|+.+.-.+|.+.+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECC
T ss_pred HHhhhcCCCCCCCCceEEEEec
Confidence 9999999999887777777765
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=258.69 Aligned_cols=324 Identities=15% Similarity=0.113 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. ++.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999752 23478899999999999999976665544322 36899999987 88899999966554 677
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCc--hhHHHHHhhhccccee
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRR 1153 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a~~R 1153 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+. ...+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8777775433221 123789999999988654211 11236799999999998642 2233344445566789
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
++||||+- +..++ .+||..+.....
T Consensus 179 i~lSATl~--n~~~~------------------~~~l~~~~~~~~----------------------------------- 203 (715)
T 2va8_A 179 LALSATIS--NYKQI------------------AKWLGAEPVATN----------------------------------- 203 (715)
T ss_dssp EEEESCCT--THHHH------------------HHHHTCEEEECC-----------------------------------
T ss_pred EEEcCCCC--CHHHH------------------HHHhCCCccCCC-----------------------------------
Confidence 99999983 23333 333332110000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1234 kDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
.-|-.....+...-.. .... . +.+.
T Consensus 204 -----~r~~~l~~~~~~~~~~-------------~~~~-----------~--------------------------~~~~ 228 (715)
T 2va8_A 204 -----WRPVPLIEGVIYPERK-------------KKEY-----------N--------------------------VIFK 228 (715)
T ss_dssp -----CCSSCEEEEEEEECSS-------------TTEE-----------E--------------------------EEET
T ss_pred -----CCCCCceEEEEecCCc-------------ccce-----------e--------------------------eecC
Confidence 0011111111100000 0000 0 0000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC-------------------------
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------- 1368 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG------------------------- 1368 (1953)
+.....+.....++. ++.++...+.++||||.....++.+...|....
T Consensus 229 ---~~~~~~~~~~~~~~~----~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 ---DNTTKKVHGDDAIIA----YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp ---TSCEEEEESSSHHHH----HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred ---cchhhhcccchHHHH----HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 000000000011222 223333578899999999999999988887642
Q ss_pred -----------CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC-------CCC
Q 000169 1369 -----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDP 1426 (1953)
Q Consensus 1369 -----------ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD-------ppW 1426 (1953)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2478899999999999999999976544 7999999999999999999999 99 899
Q ss_pred CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1427 NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1427 NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++..+.|+.|||+|.|+.+.-.+|.+.+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 9999999999999999887777777765
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=259.65 Aligned_cols=315 Identities=15% Similarity=0.090 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .++.+|..++.+|.+ +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999752 22377899999999999999855554433222 3689999997 588899999976654 678
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~~ 1152 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 8888885433221 134789999999988543221 1123678999999999864 2233333344444 567
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++||||+- +..+ |.+||..+....
T Consensus 172 ii~lSATl~--n~~~------------------~~~~l~~~~~~~----------------------------------- 196 (720)
T 2zj8_A 172 IIGLSATIG--NPEE------------------LAEWLNAELIVS----------------------------------- 196 (720)
T ss_dssp EEEEECCCS--CHHH------------------HHHHTTEEEEEC-----------------------------------
T ss_pred EEEEcCCcC--CHHH------------------HHHHhCCcccCC-----------------------------------
Confidence 899999973 2333 333332111000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
..-|-.....+...- ...... ..
T Consensus 197 -----~~rp~~l~~~~~~~~---------------~~~~~~--------~~----------------------------- 219 (720)
T 2zj8_A 197 -----DWRPVKLRRGVFYQG---------------FVTWED--------GS----------------------------- 219 (720)
T ss_dssp -----CCCSSEEEEEEEETT---------------EEEETT--------SC-----------------------------
T ss_pred -----CCCCCcceEEEEeCC---------------eeeccc--------cc-----------------------------
Confidence 000111111111000 000000 00
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc------------------C------
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------ 1368 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r------------------G------ 1368 (1953)
. .....++..+.. +...++++||||..+..++.+...|... +
T Consensus 220 -------~---~~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 220 -------I---DRFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp -------E---EECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred -------h---hhhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 0 000112222222 3346789999999999998888888653 1
Q ss_pred ---------CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC----CCCCchhH
Q 000169 1369 ---------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNE 1431 (1953)
Q Consensus 1369 ---------ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD----ppWNP~~d 1431 (1953)
..+..+||+++.++|..+++.|..+... +|++|.++++|||++++++||. || .|+++..+
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 2478899999999999999999976554 7999999999999999999998 88 68999999
Q ss_pred HhhhhcccccCCcceEEEEEEeh
Q 000169 1432 EQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.|++|||+|.|+.+.-.+|.+.+
T Consensus 363 ~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 363 HQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHhhcCCCCCCCCceEEEEec
Confidence 99999999999877766776655
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=268.52 Aligned_cols=348 Identities=16% Similarity=0.071 Sum_probs=213.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..|...+. ..+.+||++|.. |..||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988643 778999999999999998777766553 345899999976 78899999999987 4
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCch--hHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~~ 1152 (1953)
+.++.|.... ....+|+|+|++.+...... ..-.++.+|||||||++.... ..+...+..+. ...
T Consensus 254 VglltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 254 VGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp EEEECSSCBC----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ccEEeCcccc----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 5556665432 24579999999988764321 112368999999999997643 23333444454 346
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.|+||||+ .|. .++..++..+... |.....
T Consensus 324 vl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~---------------------------------- 353 (1108)
T 3l9o_A 324 YVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY---------------------------------- 353 (1108)
T ss_dssp EEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----------------------------------
T ss_pred EEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----------------------------------
Confidence 89999993 333 3333333222110 000000
Q ss_pred HhhhhcCCCCceEEEEEe-----------ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1233 VEDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c-----------~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
...-|....+.++. .........|............ . ... .. .. ...
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~--~-------~~~----~~-~~----~~~ 411 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG--D-------DPN----ST-DS----RGK 411 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhc--c-------ccc----cc-cc----ccc
Confidence 00001111111110 0000111111111100000000 0 000 00 00 000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCe----------
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV---------- 1370 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGik---------- 1370 (1953)
+... +. .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 412 ~~~~-----~~------~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 412 KGQT-----YK------GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred cccc-----cc------cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000 00 00 00000123344455555443 469999999999999999888654332
Q ss_pred -----------------------------EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1371 -----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1371 -----------------------------ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
+..+||+++..+|..+++.|..+..+ +|++|.++++|||++++++||+
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEe
Confidence 67899999999999999999986666 7999999999999999999999
Q ss_pred cCCCCCchh--------HHhhhhcccccCCcceEEEEEEeh
Q 000169 1422 YDPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1422 fDppWNP~~--------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++.+|++.. |+|++||++|.|..+..++|.+..
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 998887765 999999999999877777776644
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=258.95 Aligned_cols=375 Identities=18% Similarity=0.112 Sum_probs=216.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
+.+|+|||.+++..+.. +.+.|++.+||+|||++++..|..+.. ..+.+|||+|.. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 45899999999987765 678999999999999987666655543 235799999965 8899999999999888
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc--hhHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a-~ 1151 (1953)
.+..+.|.... ....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+.. .
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 99888886532 2357999999999976432 222347899999999998753 3345555556643 5
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++|||||- +..+ |.+|+....... . ++
T Consensus 180 ~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~--~--------------------------~v--- 208 (997)
T 4a4z_A 180 KFILLSATVP--NTYE------------------FANWIGRTKQKN--I--------------------------YV--- 208 (997)
T ss_dssp EEEEEECCCT--THHH------------------HHHHHHHHHTCC--E--------------------------EE---
T ss_pred CEEEEcCCCC--ChHH------------------HHHHHhcccCCc--e--------------------------EE---
Confidence 6899999973 2223 333332100000 0 00
Q ss_pred HHhhhhcCCCCceEEEEEe---------ccCHHHHHHHHHHHH----ccCcccCchh--HHhhhhcChhhH---HHHH--
Q 000169 1232 RVEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKA----TGTLRVDPED--EKRRVQKNPIYQ---AKVY-- 1291 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c---------~MSa~Qr~LYk~I~~----~~~l~ld~~~--ek~~l~kn~~~~---ak~~-- 1291 (1953)
-.....|...++.++. .........|..... .......... ............ .+..
T Consensus 209 ---i~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 209 ---ISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp ---EECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred ---EecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 0000011111111111 000001111111100 0000000000 000000000000 0000
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCCCccccchhhhh---hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1292 -KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1292 -~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li---~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
..-...-..-+..+..+. ........+.. ....++..|..+|.. ....++||||.....++.+..+|...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~ 359 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAG----AIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGI 359 (997)
T ss_dssp -----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTC
T ss_pred ccccccccccccccccccc----cccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcC
Confidence 000000000000000000 00000000000 112233344444432 34579999999999999999998766
Q ss_pred CC---------------------------------------eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1368 QL---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1368 Gi---------------------------------------kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
++ .+..+||+++..+|..+++.|..+..+ +|++|.+++
T Consensus 360 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a 436 (997)
T 4a4z_A 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFA 436 (997)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhh
Confidence 55 468899999999999999999986655 799999999
Q ss_pred cccCCccCCeEEEcCCCC---------CchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1409 RGLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppW---------NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
+|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 7777766655 999999999999999988887777664
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=261.62 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~E 1068 (1953)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||. .|..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999987543 23679999999999999986665 444333444689999995 588999999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---c-cccCccEEEcccccccCCchhHHHHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L-~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|.+|.+.. ++.+.. ...+ .........+|+|||++.+...... + ....+.+||||||||+.. ...++.
T Consensus 350 f~~f~~~~---v~~~~s--~~~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~~ 421 (1038)
T 2w00_A 350 YQRFSPDS---VNGSEN--TAGL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQKN 421 (1038)
T ss_dssp HHTTSTTC---SSSSCC--CHHH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHHH
T ss_pred HHHhcccc---cccccC--HHHH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHHH
Confidence 99998752 111111 1111 1122235689999999999764321 1 122689999999999853 223444
Q ss_pred h-hhcccceeEEecccCCCC
Q 000169 1145 L-DRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1145 L-k~L~a~~RLLLTGTPLQN 1163 (1953)
+ ..++...+|+|||||+..
T Consensus 422 I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCS
T ss_pred HHHhCCcccEEEEeCCcccc
Confidence 4 456677899999999864
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=259.10 Aligned_cols=277 Identities=15% Similarity=0.216 Sum_probs=190.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Ps 1075 (1953)
+.+++|+|..++..++. +.+.|++.+||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67899999999999996666655554 3446799999976 7889999999976 45
Q ss_pred CeEEEEecchhh--HhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch-------------hH
Q 000169 1076 VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV 1140 (1953)
Q Consensus 1076 lkVvvy~Gs~de--Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~-------------SK 1140 (1953)
+.+..++|.... +.... ..+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~-~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFE-KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHH-HHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CeEEEEeCCCCHHHHHHHH-HHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 788888887644 11111 234445689999999999877665666689999999999864311 11
Q ss_pred -HHHHhhhc------------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1141 -LARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1141 -lsraLk~L------------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
+...+..+ .....+++||||....+.+.+ +...+...+...
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~v~~~---------- 281 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGRL---------- 281 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCCCCBC----------
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEEeccC----------
Confidence 22333333 234689999997555432211 000000000000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
....+......+.
T Consensus 282 -----------------------------~~~~~~i~~~~~~-------------------------------------- 294 (1104)
T 4ddu_A 282 -----------------------------VSVARNITHVRIS-------------------------------------- 294 (1104)
T ss_dssp -----------------------------CCCCCCEEEEEES--------------------------------------
T ss_pred -----------------------------CCCcCCceeEEEe--------------------------------------
Confidence 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
+.|...|..+|.. .+.++||||+....++.|..+|...
T Consensus 295 ---------------------------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~ 332 (1104)
T 4ddu_A 295 ---------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF 332 (1104)
T ss_dssp ---------------------------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT
T ss_pred ---------------------------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC
Confidence 1233444455554 3589999999999999999999999
Q ss_pred CCeEE-eecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCCC
Q 000169 1368 QLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1426 (1953)
Q Consensus 1368 Gikyl-RLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDppW 1426 (1953)
|+.+. .+|| +|.+ +++|+++..+ +|++ |+++++|||++. +++||+||+|-
T Consensus 333 g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 333 KFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99998 9999 3555 9999986655 5777 999999999999 99999999998
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=245.11 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=172.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs-- 1075 (1953)
..+ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. ...+.+|||||+. |+.|+...|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 348 999999988775 67899999999999984444444433 2346899999976 788899999998764
Q ss_pred C----eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc---
Q 000169 1076 V----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1148 (1953)
Q Consensus 1076 l----kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--- 1148 (1953)
+ .+..++|......+......... ++|+|+|++.+......|. ++++|||||||++.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~ 204 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFH 204 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEE
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCcc
Confidence 4 67777776544322111111122 8999999999987755544 788999999999876444443333333
Q ss_pred ---------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1149 ---------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1149 ---------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
.....+++|+|+... .++. ..|...+
T Consensus 205 ~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~----------------------------- 239 (1054)
T 1gku_B 205 YDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQL----------------------------- 239 (1054)
T ss_dssp EETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHH-----------------------------
T ss_pred hhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcc-----------------------------
Confidence 122357777776332 1000 0000000
Q ss_pred HHHHhhHHHHHHHHhhhhc-CC-CCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEG-SL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVek-dL-PpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~ni 1297 (1953)
.. -.+.. .. +..... ..+
T Consensus 240 --------~~----i~v~~~~~~~~~i~~-~~~----------------------------------------------- 259 (1054)
T 1gku_B 240 --------LN----FDIGSSRITVRNVED-VAV----------------------------------------------- 259 (1054)
T ss_dssp --------HC----CCCSCCEECCCCEEE-EEE-----------------------------------------------
T ss_pred --------eE----EEccCcccCcCCceE-EEe-----------------------------------------------
Confidence 00 00000 00 000000 000
Q ss_pred HHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCC
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGs 1377 (1953)
...|...|..++.. .+.++||||.....++.|.++|... +.+..+||+
T Consensus 260 ----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~ 307 (1054)
T 1gku_B 260 ----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTAT 307 (1054)
T ss_dssp ----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTS
T ss_pred ----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEecc
Confidence 01122233333332 2678999999999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCccC-CeEEEcCCC
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1425 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQaA-DtVIifDpp 1425 (1953)
+ ..++++|+.+..+ +|++ |+++++|||++.+ ++||+||+|
T Consensus 308 ~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 308 K-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp S-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred H-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 7 3788999976554 5666 9999999999996 999999999
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=216.36 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=88.1
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEc
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIif 1422 (1953)
.+.++||||+....++.|.+.|...|+.+..+||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 4668999999999999999999999999999999763 5789999976555 7999999999999999 999999
Q ss_pred C--------------------CCCCchhHHhhhhcccccCC-cceEEE
Q 000169 1423 D--------------------PDPNPKNEEQAVARAHRIGQ-KREVKV 1449 (1953)
Q Consensus 1423 D--------------------ppWNP~~d~QAiGRAhRIGQ-KKeV~V 1449 (1953)
| .|.++..|+|++||++|.|. ...+.+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 9 89999999999999999997 444533
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=211.81 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=86.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCe----
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1418 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADt---- 1418 (1953)
.+.++||||.....++.+.+.|...++.+..+||. +|.+++++|+++..+ +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 46689999999999999999999999999999997 588899999987666 799999999999999 555
Q ss_pred -------------EEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1419 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1419 -------------VIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
||++|.+.++..|.|++||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=204.16 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=104.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|..++..+...+.+|||||......+.|...|...|+++..|+|.....+|..+...|+. +. +||+|
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIAT 487 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIAT 487 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeC
Confidence 34568888888888777788999999999999999999999999999999999877777644445543 33 79999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+++|+|+|+. ...+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 488 dmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 488 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 9999999999 778999999999999999999999999988776544
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=199.95 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=124.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP--s 1075 (1953)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++. . ..+++|||||. .|+.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~-~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE-N-YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH-H-CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 357899999999999999888877664 2 23589999997 588999999999964 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .+...+..+ .+.++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 45555555432211 12356799999999998764332 247899999999999853 555566666 578899
Q ss_pred EecccCCCCCHHHHHHHHhhhcc
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
+|||||.. ...+++.++.++.|
T Consensus 257 ~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCCT-TSTTHHHHHHHHCE
T ss_pred EEeCCCCC-cchHHHHHHHhcCC
Confidence 99999964 45778888887766
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=209.77 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=82.6
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi- 1421 (1953)
.+.++||||.....++.+.+.|...++.+..+|| ++|..+++.|+++... +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999986665 799999999999999 999986
Q ss_pred ------------------cCCCCCchhHHhhhhccccc-CCcceEEEEE
Q 000169 1422 ------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVIY 1451 (1953)
Q Consensus 1422 ------------------fDppWNP~~d~QAiGRAhRI-GQKKeV~Vyr 1451 (1953)
||.|.++..|.|+.||++|. |.+..+.+++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 89999999999999999998 4555665553
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=210.69 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=86.3
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi- 1421 (1953)
.+.++||||.....++.|.+.|...|+.+..++|. +|..+++.|+.+... +|++|+++++|||++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 46799999999999999999999999999999995 688899999876555 7999999999999999 99998
Q ss_pred -------------------cCCCCCchhHHhhhhcccccCC-cceEEEE
Q 000169 1422 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1450 (1953)
Q Consensus 1422 -------------------fDppWNP~~d~QAiGRAhRIGQ-KKeV~Vy 1450 (1953)
||.|.++..|+|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 5555444
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=214.58 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=109.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|.+++..+...+..|||||......+.|...|...|+++..|+|.....+|.-+...|+.+ . ++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEec
Confidence 345789999988888777889999999999999999999999999999999998777776666777753 3 89999
Q ss_pred cccccccCCccC-------------------------------------CeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1405 RAAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1405 rAGGeGLNLQaA-------------------------------------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
+.+|+|+|+... .+||+||.|-++..|.|++||++|.|.....
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999988776
Q ss_pred EEEEEehhhhhh
Q 000169 1448 KVIYMEAVVDKI 1459 (1953)
Q Consensus 1448 ~VyrLvTVEEkI 1459 (1953)
..| ++.++..
T Consensus 577 ~~f--ls~eD~l 586 (853)
T 2fsf_A 577 RFY--LSMEDAL 586 (853)
T ss_dssp EEE--EETTSGG
T ss_pred EEE--ecccHHH
Confidence 554 3444443
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=204.83 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=104.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|...+..+...+..|||||......+.|...|...|+++..|+|.....++.-+...|+. +. ++|+|
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIAT 515 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVAT 515 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEec
Confidence 34568888888888877788999999999999999999999999999999999866666555566764 23 79999
Q ss_pred cccccccCCccC----------------------------------------------------CeEEEcCCCCCchhHH
Q 000169 1405 RAAGRGLNLQSA----------------------------------------------------DTVIIYDPDPNPKNEE 1432 (1953)
Q Consensus 1405 rAGGeGLNLQaA----------------------------------------------------DtVIifDppWNP~~d~ 1432 (1953)
+.+|+|+|+... .+||+||.|-++..|.
T Consensus 516 nmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~ 595 (922)
T 1nkt_A 516 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 595 (922)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred chhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHH
Confidence 999999999864 4999999999999999
Q ss_pred hhhhcccccCCcceEEEE
Q 000169 1433 QAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1433 QAiGRAhRIGQKKeV~Vy 1450 (1953)
|++||++|.|.......|
T Consensus 596 qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 596 QLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHTSSGGGCCEEEEEE
T ss_pred HHhcccccCCCCeeEEEE
Confidence 999999999988776554
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=213.11 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=89.6
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
..+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++... +|++|+++++|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999994 799999999976655 799999999999999 999997
Q ss_pred --------------------cCCCCCchhHHhhhhccccc-CCcceEEEE
Q 000169 1422 --------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1450 (1953)
Q Consensus 1422 --------------------fDppWNP~~d~QAiGRAhRI-GQKKeV~Vy 1450 (1953)
||.|.++..|.|++||++|. |++..+.+|
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888999999999999999 566565554
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=173.74 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=111.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|..+|... .+.++||||+....++.|...|...|+.+..+||+++..+|..++++|+.+... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3467999999998863 678999999999999999999999999999999999999999999999976554 68999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999988776554
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=207.05 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=86.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE---
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV--- 1419 (1953)
.+.++||||.....++.|.+.|...++.+..+||. +|.++++.|+++... +|++|+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999994 788899999986655 799999999999997 8988
Q ss_pred -----------------EEcCCCCCchhHHhhhhcccccCC-cceE
Q 000169 1420 -----------------IIYDPDPNPKNEEQAVARAHRIGQ-KREV 1447 (1953)
Q Consensus 1420 -----------------IifDppWNP~~d~QAiGRAhRIGQ-KKeV 1447 (1953)
|+||.|-++..|+||+||++|.|. +..+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~a 471 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 471 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeE
Confidence 777778888999999999999986 4444
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=176.11 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 467999999988864 578999999999999999999999999999999999999999999999976555 688999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988776654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-17 Score=207.79 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=91.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH-----------cCCeEEeecCCCCHHHHHHHHHHhhcC--CCCccEEEEecccccc
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1409 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~-----------rGikylRLDGsTs~eeRqeaIerFNs~--ds~ifVfLLSTrAGGe 1409 (1953)
.+.++||||.....++.+.+.|.. .++.+..+||+++.++|..+++.|... ..+..-+|++|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 588899999999999999999999711 0123447999999999
Q ss_pred ccCCccCCeEEEcCC------------------CCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1410 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1410 GLNLQaADtVIifDp------------------pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|||++++++||.++. |.+...+.|+.||++|. ... .+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G--~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPG--KCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSE--EEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCC--EEEEEec
Confidence 999999999999777 88999999999999998 233 4455544
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=181.62 Aligned_cols=141 Identities=28% Similarity=0.314 Sum_probs=109.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 45899999999997664 4469999999999999998877543 4689999998 6889999999994 45
Q ss_pred e-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEE
Q 000169 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1077 k-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLL 1155 (1953)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ....+..+...++|+
T Consensus 159 ~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~ 223 (237)
T 2fz4_A 159 EYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLG 223 (237)
T ss_dssp GGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEE
T ss_pred CeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEE
Confidence 5 777777543 246899999999987765443 469999999999997654 334455667889999
Q ss_pred ecccCCCCCH
Q 000169 1156 LTGTPLQNDL 1165 (1953)
Q Consensus 1156 LTGTPLQNnL 1165 (1953)
|||||.+++-
T Consensus 224 LSATp~r~D~ 233 (237)
T 2fz4_A 224 LTATFEREDG 233 (237)
T ss_dssp EEESCC----
T ss_pred EecCCCCCCC
Confidence 9999988764
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=177.76 Aligned_cols=123 Identities=25% Similarity=0.349 Sum_probs=97.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
..+.|+..|.++|... ..+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 4567999999988864 2578999999999999999999999999999999999999999999999976555 78899
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999887765554
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=169.86 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 899999988864 578999999999999999999999999999999999999999999999976555 688999999
Q ss_pred cccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+|+|++.+++||+||+|||+..|.|++||++|.|++..|.++..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999998887765543
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-17 Score=175.89 Aligned_cols=120 Identities=26% Similarity=0.330 Sum_probs=105.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|.++|.. .+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45688777776653 567999999999999999999999999999999999999999999999976555 789999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988775553
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=205.82 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-P--s 1075 (1953)
.+.|.|.+++.-+ |+.+.|.+++.+||+|||+++...|...+. ....+.+|+|+|.. |+.+-..++.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998654 456778999999999999998766665554 33456899999976 6666566665433 2 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc----ccCccEEEcccccccCCchhHHHH-Hhhhc--
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVLAR-DLDRY-- 1148 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~----kikWd~VIIDEAHrLKN~~SKlsr-aLk~L-- 1148 (1953)
++|..+.|......+ ...+.+|+|+|++.+........ -.+..+|||||+|.+.......+. .+..+
T Consensus 1002 ~~V~~ltGd~~~~~~------~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLK------LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHH------HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchh------hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 678878886543322 23457999999998733211111 125689999999999754332222 22222
Q ss_pred ------ccceeEEecccC
Q 000169 1149 ------RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ------~a~~RLLLTGTP 1160 (1953)
...+.++||||-
T Consensus 1076 i~~~~~~~~riI~lSATl 1093 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSL 1093 (1724)
T ss_dssp HHHTTSSCCEEEEEESCB
T ss_pred HHhhcCCCceEEEEeCCC
Confidence 234678999994
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=203.29 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=79.8
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE--
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI-- 1420 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI-- 1420 (1953)
.+.++||||+....++.|.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4789999999999999999999999999999999998764 433222 5899999999999996 99988
Q ss_pred --------EcC-----------CCCCchhHHhhhhcccccCCcce
Q 000169 1421 --------IYD-----------PDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1421 --------ifD-----------ppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
+|| .|.++..|+||+||++| |.+..
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 677 78889999999999999 76654
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-16 Score=197.59 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.0
Q ss_pred eeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC-
Q 000169 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1424 (1953)
Q Consensus 1346 KVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp- 1424 (1953)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. +|++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34788888999999999999999999999999999999999999998444443 68999999999999 9999999999
Q ss_pred -------------CCCchhHHhhhhcccccCCc-ceEEEEEEeh
Q 000169 1425 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (1953)
Q Consensus 1425 -------------pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (1953)
|++...+.|+.||++|.|.. ..-.||.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999987 3456666644
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=166.25 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+..|..++..+ .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3888888877653 567999999999999999999999999999999999999999999999976554 78999999
Q ss_pred ccccCCccCCeEEEcCCC------CCchhHHhhhhcccccCCcceEEEE
Q 000169 1408 GRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDpp------WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++|||++.+++||+||+| |++..|+|++||++|.|+...+.++
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999 6779999999999999977655433
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-16 Score=169.73 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=109.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|.+++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 346799999999874 4578999999999999999999999999999999999999999999999976555 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+||++..|.|++||++|.|+...|.+++
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999887765554
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=162.94 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs 1075 (1953)
.|+|||.+++.++.. +.++|++.+||+|||++++..+...+.. ......+|||||. .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999876666554321 1234579999998 5889999999999998
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-c
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a 1150 (1953)
+.+..+.|........ ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQK---EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHH---HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHH---HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 8888888765443221 122346899999999987543 2333457899999999998543 333444444444 4
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
...+++|||+
T Consensus 176 ~~~i~~SAT~ 185 (207)
T 2gxq_A 176 RQTLLFSATL 185 (207)
T ss_dssp SEEEEECSSC
T ss_pred CeEEEEEEec
Confidence 4689999998
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=165.56 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~Q-W~~Ef~Kwa 1073 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |.+++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887765432 2356899999985 6788 999999987
Q ss_pred C-CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--------ccccCccEEEcccccccCC
Q 000169 1074 P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1074 P-slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--------L~kikWd~VIIDEAHrLKN 1136 (1953)
+ .+.+..+.|........ .......+|+|+||+.+...... +...+|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCH---HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhH---HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 47777777765433211 11123689999999999765432 3345789999999999964
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=165.25 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .|+.||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 67899999999999998887776655322233489999997 58899999999986 47
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc-h--hHHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR-E--SVLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~-~--SKlsraLk~L~- 1149 (1953)
+++.++.|........ ........+|+|+|++.+.... ..+...++++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 8888888865543222 1233456799999999987542 2233457899999999998542 2 22333333343
Q ss_pred cceeEEecccCCCC
Q 000169 1150 CQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1150 a~~RLLLTGTPLQN 1163 (1953)
...+++|||||-.+
T Consensus 190 ~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 190 EKQVMMFSATLSKE 203 (220)
T ss_dssp SSEEEEEESCCCTT
T ss_pred cCeEEEEEeecCHH
Confidence 45689999998443
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-17 Score=174.69 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..|+.+|..++.. ..+.++||||+....++.|.++|...|+.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888875 3568999999999999999999999999999999999999999999999975544 7899999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999988875554
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=199.45 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--------~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (1953)
+|.+.|.+++..++ +.+.|.+++.+||+|||+.+...|...+.... ..+++|+|+|.. |+.+-.++|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78899999987554 46778999999999999998766655443221 234689999965 6666777776
Q ss_pred HHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCCchhHHH
Q 000169 1071 KWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1071 KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+.+. +++|..+.|......+ .....+|+|||++.+..- ...+ -...+|||||+|.+.+......
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~------~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE------EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT------TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc------ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 6554 4677778876433211 134689999999986321 1122 2468999999998865322222
Q ss_pred -----HHhh---hcc-cceeEEecccCCCCCHHHHH
Q 000169 1143 -----RDLD---RYR-CQRRLLLTGTPLQNDLKELW 1169 (1953)
Q Consensus 1143 -----raLk---~L~-a~~RLLLTGTPLQNnL~ELw 1169 (1953)
+.+. ... .-++++||||- .|+.|+-
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA 261 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA 261 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH
Confidence 2211 122 33689999993 2344443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=179.39 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=102.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|...+......+.+|||||......+.|...|...|+++..|+|.....+|.-+...|. .+. ++++|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KGM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--TTC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--CCe---EEEEc
Confidence 3456888888888888778999999999999999999999999999999999854444443344454 333 79999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+.+|+|+|+. ...+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999998876554
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=176.60 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566666666666667889999999999999999999999999999999999999999999999975544 7999999
Q ss_pred cccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccC
Q 000169 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIG 1442 (1953)
+++|||++.+++||++|. ++++..|+|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=158.41 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=112.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---s 1075 (1953)
+|+|||.+++..+.. +.+.|+..+||+|||++++..+...+.......++|||||.. ++.||.+++.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999888766655443233445799999975 78899999998864 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhhcc-c
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a 1150 (1953)
+.+..+.|........ .......+|+|+|++.+..... .+...++++|||||||++.... ..+...+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7788888776544332 1224578999999999865432 2333478999999999986532 23334444444 4
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
..++++|||+
T Consensus 178 ~~~l~~SAT~ 187 (206)
T 1vec_A 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred ceEEEEEeeC
Confidence 5789999998
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=162.45 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---- 1074 (1953)
+++|||.+++.++.. +.++|++.+||+|||++++..+...+........+|||||.. |+.||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999998886 678999999999999987776665543333456899999975 88999999998864
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhc
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L 1148 (1953)
.+.+..+.|+....... ......++|+|+|++.+.... ..+...++++|||||||++.+.. ..+...+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 46677777765443221 111346799999999987542 22334478999999999986432 3344455555
Q ss_pred c-cceeEEecccCCCCCHHH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKE 1167 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~E 1167 (1953)
. ...++++|||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 4 34689999997 334433
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=162.08 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.++|||.+++..+.. +.+.|++.+||+|||++++..+...+.......++|||||. .|+.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 67899999999999998766555443223445689999997 58899999999986 36
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc---hhHHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L~- 1149 (1953)
+++.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK----TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHH----HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHH----HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 7888888865443221 12346899999999987642 2333457889999999999543 233444455554
Q ss_pred cceeEEecccC
Q 000169 1150 CQRRLLLTGTP 1160 (1953)
Q Consensus 1150 a~~RLLLTGTP 1160 (1953)
...+++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45689999996
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=160.85 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVVP~-SLL~QW~~Ef~KwaP 1074 (1953)
.|+|||.+++.+++. +.+.|++.+||+|||++++..+...+... .....+|||||. .|+.||.+++.++..
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999998875 67899999999999999877666544321 234579999997 588999999999986
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1075 s--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. +.+..+.|........ ......+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEA----ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHH----HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHH----HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 6777777765543221 122578999999999976532 234457899999999998653 3344555555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ...+++||||+
T Consensus 199 ~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 199 LPKKRQTLLFSATQ 212 (236)
T ss_dssp SCTTSEEEEEESSC
T ss_pred CCCCCeEEEEEeeC
Confidence 54 34589999997
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=162.91 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.++|||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||.. |+.||.+++.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999998875 678999999999999998777766554444556799999975 78899999999875 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhhcc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a 1150 (1953)
.+.++.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+. .
T Consensus 141 ~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 141 QSAVIVGGIDSMSQS---LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CEEEECTTSCHHHHH---HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 777777765443322 1224578999999999976532 233446899999999998653 233444455554 4
Q ss_pred ceeEEecccCC
Q 000169 1151 QRRLLLTGTPL 1161 (1953)
Q Consensus 1151 ~~RLLLTGTPL 1161 (1953)
..+++||||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 56899999983
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=157.01 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||.. ++.||.+++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999986555544433334456899999975 78999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 777777765433221 11234899999999987542 2233346899999999998543 233444444443 34
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
.+++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 5899999983
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=169.57 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=107.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+.+|.+++... .+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 3467999999998764 488999999999999999999999999999999999999999999999986655 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+||++..|+|++||++|.|+...|.+++
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887766554
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=159.12 Aligned_cols=154 Identities=22% Similarity=0.267 Sum_probs=111.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSEL 1069 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---------~~GP~LIVVP~S-LL~QW~~Ef 1069 (1953)
.|+|||.+++.+++. +.+.|++.+||+|||+.++..+...+.... ....+|||||.. |+.||.+++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 799999999998876 678999999999999998777766553221 235799999975 889999999
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc--hhHHHH
Q 000169 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLAR 1143 (1953)
Q Consensus 1070 ~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~--~SKlsr 1143 (1953)
.++.. .+.+..+.|........ .......+|+|+|++.+..... .+....+++|||||||++.+. ...+..
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99875 36666677665443222 1223568999999999976432 233346789999999998643 333444
Q ss_pred Hhhhc--c---cceeEEecccC
Q 000169 1144 DLDRY--R---CQRRLLLTGTP 1160 (1953)
Q Consensus 1144 aLk~L--~---a~~RLLLTGTP 1160 (1953)
.+..+ . ....+++||||
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSC
T ss_pred HHhhccCCCCCCcEEEEEEEeC
Confidence 44432 2 34589999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=159.44 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||+. ++.||.+++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987766665543233456899999975 88999999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC--chhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ .......++|+|+|++.+.... ..+....+++|||||||++.+ ....+...+..+. ..
T Consensus 128 ~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 666666654433221 1223345899999999887542 223344689999999999843 3344555555554 34
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
..+++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 6799999983
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=165.31 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
.+++..|...|......+.+|||||.....++.|.++|...|+++..+||.++..+|..+++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3455666555666666789999999999999999999999999999999999999999999999975554 7999999
Q ss_pred cccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccCCcceEE
Q 000169 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+++|+|++.+++||++|. ++++..|+|++||++|. ....|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i 550 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVI 550 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEE
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEE
Confidence 999999999999999998 89999999999999997 334443
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=149.65 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+++|||.+++..+.. +.+.|+..+||+|||+.++..+...+.. ......+|||||.. |+.||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 7789999999999999887665544321 12445789999976 788999999998
Q ss_pred C-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1073 L-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1073 a-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. .++.+..+.|........ ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 6 467777777655433221 122356899999999987642 2233346899999999998643 2334444555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ....+++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 54 34679999996
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=150.24 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~KwaPs-- 1075 (1953)
.++|||.+++..+.. +.+.|+..+||+|||+.++..+...+... .....+|||||.. |+.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67889999999999999876665554322 2334699999976 889999999999864
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh----cccccCccEEEcccccccCCc-----hhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDR-----ESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s----~L~kikWd~VIIDEAHrLKN~-----~SKlsraLk 1146 (1953)
+.+..+.|........ .......++|+|+|++.+..... .+.-.++++|||||||++... ...+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHTTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHHHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 5555555543222111 11224577999999999975432 233446899999999998542 222333333
Q ss_pred hc--ccceeEEecccC
Q 000169 1147 RY--RCQRRLLLTGTP 1160 (1953)
Q Consensus 1147 ~L--~a~~RLLLTGTP 1160 (1953)
.+ ...+.++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 33 234689999998
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=145.99 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.++|||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||.. |+.||.+++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988875 67899999999999999877666555422 2345789999976 7889999888875
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1074 --PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
.++.+..+.|........ .......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQI---RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 356777777765443222 122346899999999987543 2233347889999999998643 2334444555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ....+++|||.
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 53 34589999996
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=149.48 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
.|+|+|.+++..++. +.+.|++.+||+|||+.++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 577899999999999998777666554321 345799999975 88899999999975
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1075 s--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. ..+..+.|........ ......++|+|+|++.+..... .+.-.++++|||||||++... ...+...+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 3 5566666654433222 1123458999999999875432 233346899999999998653 2334444445
Q ss_pred cc-cceeEEecccCC
Q 000169 1148 YR-CQRRLLLTGTPL 1161 (1953)
Q Consensus 1148 L~-a~~RLLLTGTPL 1161 (1953)
+. ....++||||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 54 345899999983
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-11 Score=148.45 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeG 1410 (1953)
.+...|..+ ...+.++|||+.....++.+.+.|.. +. +.+.|.. ..|.+++++|+.+ .. ..|.+.+....+|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceecc
Confidence 344444444 35577999999999999999888754 33 3445554 4688999999863 22 2223478999999
Q ss_pred cCCcc----CCeEEEcCCCCCch------------------------------hHHhhhhcccccCCcceEEE
Q 000169 1411 LNLQS----ADTVIIYDPDPNPK------------------------------NEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1411 LNLQa----ADtVIifDppWNP~------------------------------~d~QAiGRAhRIGQKKeV~V 1449 (1953)
||++. +.+||+++.|+-+. ...|++||+.|--...-|.+
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 99997 88999999996333 24599999999765555533
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=143.99 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---P 1074 (1953)
..++++|..++..++. ..+.+.|++.+||+|||+.++..+...+........+|||||+. |+.|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999977764 12378899999999999987765554443333444799999977 7788888877765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc---hhHHHHHhhhc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY 1148 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L 1148 (1953)
.+.+.++.|....... .....+|+|+|++.+..... .+.-.++.+|||||||++.+. ...+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 6777777765443211 13567999999999976542 333347889999999998641 12233333344
Q ss_pred cc-ceeEEecccCC
Q 000169 1149 RC-QRRLLLTGTPL 1161 (1953)
Q Consensus 1149 ~a-~~RLLLTGTPL 1161 (1953)
.. ...+++|||+-
T Consensus 265 ~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 265 PRNCQMLLFSATFE 278 (300)
T ss_dssp CTTCEEEEEESCCC
T ss_pred CCCCEEEEEeccCC
Confidence 33 45899999983
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=147.20 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kwa 1073 (1953)
|...+|-|..|+--++. +. |....||.|||++++..+. +.... ...++||||+..|. + |...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998755442 22112 23689999998553 3 777777766
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH----hhh-----hccccc---CccEEEcccccccCCchhHH
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVL 1141 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~----kd~-----s~L~ki---kWd~VIIDEAHrLKN~~SKl 1141 (1953)
++++.++.|+.....+ ......+|++.|+..|. ++. ..+... ...++||||+|.|.-.
T Consensus 148 -GLsv~~i~Gg~~~~~r-----~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD---- 217 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAER-----RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID---- 217 (997)
T ss_dssp -TCCEEECCTTCCHHHH-----HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS----
T ss_pred -CCeEEEEeCCCCHHHH-----HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh----
Confidence 5677666665432211 11235799999999883 222 112233 6789999999976421
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHh
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
.+..-|++|| |+... ..+|..++
T Consensus 218 -------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 218 -------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp -------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred -------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 1122389999 87766 44444443
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-08 Score=126.82 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
++||+|.+.+.-+.....++.++|+...||+|||+.++..+...+... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999987777777788999999999999999887665554332 35899999976 7888999988764 256
Q ss_pred eEEEEec
Q 000169 1077 SCIYYVG 1083 (1953)
Q Consensus 1077 kVvvy~G 1083 (1953)
++++..|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6665554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=112.16 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
.+++||.+++..+.. +...++..++|+|||.+...++.......+. ...+|+++|.. +..+....+.+.+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999988876 6778999999999997766555543332332 23678888987 455666667665532
Q ss_pred C-eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc-CCchhH--HHHHh-hhccc
Q 000169 1076 V-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRC 1150 (1953)
Q Consensus 1076 l-kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL-KN~~SK--lsraL-k~L~a 1150 (1953)
+ ..+.|.-. ... .......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ ..+..
T Consensus 137 ~~~~~g~~~~-~~~------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 137 PGKSCGYSVR-FES------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE 208 (235)
T ss_dssp TTSSEEEEET-TEE------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred cCceEEEeec-hhh------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC
Confidence 1 11111111 000 01124578999999988766432 2346899999999984 222221 22222 23344
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
...+++|||+
T Consensus 209 ~~~il~SAT~ 218 (235)
T 3llm_A 209 VRIVLMSATI 218 (235)
T ss_dssp SEEEEEECSS
T ss_pred CeEEEEecCC
Confidence 5689999997
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=123.66 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--s 1075 (1953)
.++||||.+.+..+......+.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37999999998877777777888999999999999988766554 245899999976 78899999988743 5
Q ss_pred CeEEEEecchhh--------------------------------HhHHHHH----------------HHhhccccEEEEe
Q 000169 1076 VSCIYYVGAKDQ--------------------------------RSRLFSQ----------------EVAALKFNVLVTT 1107 (1953)
Q Consensus 1076 lkVvvy~Gs~de--------------------------------Rk~l~~q----------------ei~~~~fdVVITT 1107 (1953)
+++++..|.... ...+... .......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677776664321 0001000 1113467999999
Q ss_pred HHHHHhhh--hccc-ccCccEEEcccccccCC
Q 000169 1108 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1108 YEsL~kd~--s~L~-kikWd~VIIDEAHrLKN 1136 (1953)
|.++..+. ..+. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2121 13567899999999976
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=81.92 Aligned_cols=152 Identities=21% Similarity=0.155 Sum_probs=95.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
...|=+.|.++|..++. ...-.|+.-+.|+|||.+.+.+|.+++.. ..++||++|+. .+.+....+.....
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~~-- 258 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCKQ-- 258 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcCC--
Confidence 34789999999998875 12235888999999999999999988852 35899999987 45666666655432
Q ss_pred eEEEEecchhh--------------------------H------------------------------hHHHH-----HH
Q 000169 1077 SCIYYVGAKDQ--------------------------R------------------------------SRLFS-----QE 1095 (1953)
Q Consensus 1077 kVvvy~Gs~de--------------------------R------------------------------k~l~~-----qe 1095 (1953)
+++-+ |.... + +.+.. ..
T Consensus 259 ~ilRl-G~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 259 RILRL-GHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp CEEEC-SCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEe-cchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 21100 0 00000 00
Q ss_pred HhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1096 VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1096 i~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
......+|+++|......+ ...+....|++||||||-.+.- ...+.-+....+++|-|=|.|-
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e-----~~~lipL~~~~~~ILVGD~~QL 402 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALE-----ASCWIPLLKARKCILAGDHKQL 402 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCH-----HHHTTTGGGSSEEEEEECTTSC
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccch-----HHHHhhccccceEEEcCCcccc
Confidence 0123467888876554332 2345567899999999866532 2233344445678899988763
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0029 Score=77.59 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
..|-+.|.+++..++.....+. ..+|....|+|||..+..++.++... + ...+++++|+.....-..+.. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~-~~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-G-ETGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-CceEEEecCcHHHHHHHHhhh----ccc
Confidence 3699999999998876554443 66888999999999888888888753 2 257899999876543222211 011
Q ss_pred EEEEecchhhHhHHHHHHH-hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEe
Q 000169 1078 CIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1156 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei-~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLL 1156 (1953)
+..++ .++.... .......+.. ........+++|||||+|.+-. ..+...+..+....++++
T Consensus 98 ~~T~h-------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIH-------SILKINPVTYEENVLFEQ--------KEVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHH-------HHHTEEEEECSSCEEEEE--------CSCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHH-------HHhccCcccccccchhcc--------cccccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEE
Confidence 11000 0000000 0000000000 0011223689999999998732 222333334455678999
Q ss_pred cccCCCC
Q 000169 1157 TGTPLQN 1163 (1953)
Q Consensus 1157 TGTPLQN 1163 (1953)
.|-|-|.
T Consensus 161 vGD~~Ql 167 (459)
T 3upu_A 161 IGDNKQI 167 (459)
T ss_dssp EECTTSC
T ss_pred ECCHHHc
Confidence 9988763
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0043 Score=79.12 Aligned_cols=150 Identities=18% Similarity=0.307 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +...++....|+|||.++..++..+.. ....++||++|+.. +.+-...+.+. ++.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 688999999988764 344688899999999999888877763 24468999999875 44555555543 2222
Q ss_pred EEEecchh-----------------------hHh-----------------HHHH------HHHhhccccEEEEeHHHHH
Q 000169 1079 IYYVGAKD-----------------------QRS-----------------RLFS------QEVAALKFNVLVTTYEFIM 1112 (1953)
Q Consensus 1079 vvy~Gs~d-----------------------eRk-----------------~l~~------qei~~~~fdVVITTYEsL~ 1112 (1953)
+-+..... ... ..+. ........+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 22111100 000 0000 0011345689999876543
Q ss_pred hhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1113 kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
. ..+....|++||||||..+..+.+ + +.-+....+++|.|=|.|-
T Consensus 332 ~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred c--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 2 345567899999999977654432 1 1122234689999988764
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0031 Score=79.99 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
+..|-+.|..++..+.. +...+|.-..|+|||.++.+++..+.. ...++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45788999999988774 556788999999999888777766654 23589999999876665544321 00
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEec
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLT 1157 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLT 1157 (1953)
...+ ..++ .... . .+.. ..-....+++|||||++.+-. ..+...+..+....+++|.
T Consensus 256 a~Ti-------h~ll----~~~~-~-------~~~~--~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTV-------HRLL----GYGP-Q-------GFRH--NHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEH-------HHHT----TEET-T-------EESC--SSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHH-------HHHH----cCCc-c-------hhhh--hhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 0000 0000 0000 0 0000 111234789999999998842 3344445556677899999
Q ss_pred ccCCCC
Q 000169 1158 GTPLQN 1163 (1953)
Q Consensus 1158 GTPLQN 1163 (1953)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999874
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0069 Score=79.63 Aligned_cols=149 Identities=18% Similarity=0.251 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +.-.++....|+|||.++..++.++... ...++||++|+.. +.+-...+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 688999999987763 3346888999999999998888887753 2358999999875 455555565542 222
Q ss_pred EEEecchh----------------------hHhHH-----------------HH------HHHhhccccEEEEeHHHHHh
Q 000169 1079 IYYVGAKD----------------------QRSRL-----------------FS------QEVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1079 vvy~Gs~d----------------------eRk~l-----------------~~------qei~~~~fdVVITTYEsL~k 1113 (1953)
+-+..... ....+ +. ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 22211100 00000 00 00112356899998765542
Q ss_pred hhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1114 d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
..+.. .|++||||||..+.... .+ +..+....+++|-|=|.|-
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~-~l---i~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPE-CL---IPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHH-HH---HHHTTTBSEEEEEECTTSC
T ss_pred --HHHhc-cCCEEEEECccccchHH-HH---HHHHhCCCEEEEEeCcccc
Confidence 23444 89999999998874332 11 2222334689999988763
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0068 Score=79.65 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=92.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +.-.++....|+|||.++..++..+... ...++||++|+... .+-...+.+. ++.+
T Consensus 356 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~v 427 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 427 (800)
T ss_dssp CCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccce
Confidence 689999999987764 3346888999999999998888877632 34689999998754 4444445432 2222
Q ss_pred EEEecchhh-----------------------HhHHH-----------------H------HHHhhccccEEEEeHHHHH
Q 000169 1079 IYYVGAKDQ-----------------------RSRLF-----------------S------QEVAALKFNVLVTTYEFIM 1112 (1953)
Q Consensus 1079 vvy~Gs~de-----------------------Rk~l~-----------------~------qei~~~~fdVVITTYEsL~ 1112 (1953)
+-+...... ...+. . ........+||++|...+.
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 507 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 507 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGG
T ss_pred EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhC
Confidence 222111000 00000 0 0011235688998876554
Q ss_pred hhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1113 kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
. ..+....|++||||||..+..+.. + +..+....+++|.|=|.|-
T Consensus 508 ~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 508 D--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp C--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred C--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 2 335567899999999976643321 1 2222335689999988763
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=75.68 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHH-HHHHHHHHCCCC--e
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVN-WKSELHKWLPSV--S 1077 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~Q-W~~Ef~KwaPsl--k 1077 (1953)
-+.|..++.-++. +...++.-..|+|||.++..++..+.... ....++++++|+..... -.+.+..+...+ .
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987763 55678999999999988777776665421 22347899999875544 333333321100 0
Q ss_pred EEEEecchhhHhHHHHHHHhhcccc-EEEEeHHH--HHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeE
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fd-VVITTYEs--L~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RL 1154 (1953)
.....+.... ....+ ++-++... +.... ....++++||||||+.+- ...+...+..+....++
T Consensus 227 ~~~~~~~~~~----------~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIPED----------ASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARV 292 (608)
T ss_dssp SCCCCSCSCC----------CBTTTSCC-----------CT--TSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEE
T ss_pred HHHHhccchh----------hhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEE
Confidence 0000000000 00000 11111110 11111 122378999999999553 23344556666777899
Q ss_pred EecccCCCCC
Q 000169 1155 LLTGTPLQND 1164 (1953)
Q Consensus 1155 LLTGTPLQNn 1164 (1953)
+|.|-|-|-.
T Consensus 293 iLvGD~~QL~ 302 (608)
T 1w36_D 293 IFLGDRDQLA 302 (608)
T ss_dssp EEEECTTSGG
T ss_pred EEEcchhhcC
Confidence 9999987654
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.084 Score=64.07 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---aP 1074 (1953)
..|.|||...+..+.. ..-.++.-.=+.|||..+.+++.+.... .....+++++|.. ....+..++..+ .|
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4799999998876632 2336777779999999888877765432 2334688888975 333344555554 34
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcc--c
Q 000169 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--C 1150 (1953)
Q Consensus 1075 s-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~--a 1150 (1953)
. +...+...+.. .+ .+ ..+..+.+.+- +...+.....+++|+||+|.+++. ..++.++. .+. .
T Consensus 237 ~ll~~~~~~~~~~---~I---~f-~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNKG---SI---EL-DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECSS---EE---EE-TTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCcc---EE---Ee-CCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 21111111100 00 01 11222222221 233445667899999999999863 23344443 222 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhh
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
..+++++.||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 46888889996553 55555543
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.069 Score=67.49 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.|-+.|.++|.. . ....++-...|+|||.+.+.-|.+++...+ ....+|+|+++. ........+.+.+
T Consensus 9 ~Ln~~Q~~av~~-----~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA-----P-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC-----C-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC-----C-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 688999999961 1 234566667999999999999999987433 335799999876 4445555566553
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.036 Score=60.20 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.++.-.||+|||..++.++..+.. ...+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467889999999888777765543 22468888876
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.044 Score=67.68 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=69.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~ 1100 (1953)
.++....|+|||.....++. ..+.|||+|+. +...|.+.+.+. |. ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-------------~~~ 212 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-------------IVA 212 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-------------ccc
Confidence 36778899999976655441 25789999976 677788877432 00 001
Q ss_pred ccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
-++-|.|++.+...........+++|||||+..+ +...+...+....+ .+++|.|=|-|-
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 1234778887765544433445899999999865 22333333334444 899999988654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.26 Score=62.61 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--- 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--- 1073 (1953)
...|.|||...+..+. . ....++.-.=|.|||..+.+++.+.+-.. ....++++.|.. ....+...+..++
T Consensus 161 ~~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3479999999887662 1 33467777899999998877776665432 234788888965 4444445666554
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh-cc--
Q 000169 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR-- 1149 (1953)
Q Consensus 1074 Ps-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~-- 1149 (1953)
|. +.......+.. .+ .+ ..+..+.+.+ .+...+.....+++||||+|.+++.. .++.++.. +.
T Consensus 236 p~~~~~~~~~~~~~---~i---~~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG---SI---EL-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp CTTTSCCEEEECSS---EE---EE-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred hHhhccccccCCcc---EE---Ee-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 32 11111100100 00 00 1122222222 12233445578999999999997742 44444443 22
Q ss_pred cceeEEecccCCCC
Q 000169 1150 CQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1150 a~~RLLLTGTPLQN 1163 (1953)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34688999999554
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.099 Score=58.98 Aligned_cols=109 Identities=19% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH-HHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH-KWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~-KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
.-.++.-+||.|||..++.++..+.. ...+++|+.|.-- .+ .. ..+.. .|-
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d----~r-~~~~i~sr------lG~-------------- 64 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKID----TR-SIRNIQSR------TGT-------------- 64 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCC----GG-GCSSCCCC------CCC--------------
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccC----ch-HHHHHHHh------cCC--------------
Confidence 33477899999999888887766653 2346787776431 00 00 00000 000
Q ss_pred ccccEEEEeHHHHHhhh-hcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeEEeccc
Q 000169 1099 LKFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
.-..+.+.+...+.... ..+....+++|||||++.+... ....+..+ .....++|||-
T Consensus 65 ~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 00112233333333221 2233346899999999987542 22233332 22567888885
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.099 Score=59.69 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEech
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPN 1059 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~ 1059 (1953)
.+.+|.-+.|+|||..+-++...+...... .++++.|.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 346899999999999988777666542221 2355555443
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.29 Score=55.10 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-+||.|||..++.++..+.. ...++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 47899999999888887765543 335789988863
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.0043 Score=66.08 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=68.2
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCC
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRD 1791 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~ 1791 (1953)
+.++ |+|.++.+| .+||++ ++||. ++|.+++. +-..|+.|+|.-..+...|+.. +||||+
T Consensus 22 ~~De-~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~Iy--- 92 (147)
T 3iu6_A 22 HQDD-EGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIY--- 92 (147)
T ss_dssp CBCT-TSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHH---
T ss_pred hcCC-CCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHH---
Confidence 4444 899999999 999988 78998 99999766 6788999999999988888765 999999
Q ss_pred CCccccccchhhhcccccccc
Q 000169 1792 EGEDEQVLQPKIKRKRSIRVR 1812 (1953)
Q Consensus 1792 ~~e~~~~~q~~~~~krs~~~r 1812 (1953)
+|..+||-.|+++|....+
T Consensus 93 --eDAv~Lq~~f~~~r~eL~~ 111 (147)
T 3iu6_A 93 --EDAVELQQFFIKIRDELCK 111 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998866543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.41 Score=55.43 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~ 1099 (1953)
.+.+|.-+.|+|||..+-++...+... ..+++.|....+...+...+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~--------------------------- 87 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG--------------------------- 87 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT---------------------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence 457899999999998887777666542 34555555444444444433320
Q ss_pred cccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc---hhHHHHHhhhc-ccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
....+.. .+ ...++|||||+|.+... ...+...+..+ ....++++|+|
T Consensus 88 -------~~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 88 -------TINEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------CHHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------cHHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0001111 01 13679999999998642 22334444433 34457888886
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.28 Score=57.60 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
++|+|.+.+..+...+.++. ..+|..+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 67899999888887765543 258899999999999988887765
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.37 Score=53.06 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.++.-.||+|||..++.++..+.. ...+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 367889999999888877766543 33578888876
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.48 Score=50.06 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=26.3
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
....+|||||+|.+... ...+...+.......++++|+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46789999999998532 223444444555566777776543
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=91.78 E-value=0.78 Score=58.80 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
.|-|.|.++|... ....++....|+|||.+.+.-|.+++...+ ....+|+|+.+. ........+.+..+
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4779999998641 334566678999999999999999987544 445789999765 45555566666543
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.34 Score=55.90 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred CccEEEcccccccC-C-chhHHHHHhhhcccceeEEecccCCC
Q 000169 1122 DWKYIIIDEAQRMK-D-RESVLARDLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1122 kWd~VIIDEAHrLK-N-~~SKlsraLk~L~a~~RLLLTGTPLQ 1162 (1953)
...+|||||+|.+. . ....+...+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 2 23345555555566778888877643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=91.30 E-value=0.9 Score=46.77 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999888777766543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.9 Score=46.93 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.+|.-+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999988877766654
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=1.2 Score=47.29 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
++..+..+...+..-......+|.-+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455555554444322212246899999999998776665544
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=90.06 E-value=0.78 Score=49.56 Aligned_cols=38 Identities=16% Similarity=-0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1007 eGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.++..... .+.+.+|.-+.|+|||..+-++...+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444333 345668999999999988877766554
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.99 E-value=0.48 Score=55.23 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
.+.+|.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhccc
Confidence 456899999999998887765542 23555555554544443
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=0.52 Score=56.02 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (1953)
.+.||.-+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 467899999999999887776554 2355555444443
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=88.57 E-value=0.99 Score=51.54 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-.||.|||..+|..+.... ....++||+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 6788999999988777665443 4445788888753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.56 E-value=0.34 Score=50.03 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000169 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1010 ~WLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (1953)
.++......+.+.+|.-|.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3443444567788999999999998775543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=4.9 Score=42.33 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
.+.|..++.++..... .+.+.+|.-+.|+|||..+-+++..+....+. .++++....++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKDLIFRLKHL 85 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHHH
Confidence 3578888887776553 34556888999999998887777666533322 34444444444444433
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=0.81 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (1953)
+..+........+.+|.-++|+|||..+-++.
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 33444444556778999999999997765554
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.39 E-value=0.72 Score=53.31 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.5
Q ss_pred CccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+.+|||||+|.+.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 568999999999853 233455556665666677776654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.36 E-value=1.2 Score=52.08 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHH-hhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLS-LYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLls-L~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++.+++.+..++. .... ..+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556655543333 2222 234688999999999888777766544
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.34 E-value=0.86 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.6
Q ss_pred CccEEEcccccccCCch-hHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGT 1159 (1953)
+|.+|||||+|+|.... ..+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 68999999999995322 234455555555556666643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.87 E-value=0.63 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (1953)
...+.+|.-+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445678999999999988766654
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.026 Score=58.11 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=61.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 32 ~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 105 (123)
T 2dat_A 32 SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIY-----EDS 105 (123)
T ss_dssp SSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 568899999 88999999999999999999877 7789999999877776666655 778888 677
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|.++++
T Consensus 106 ~~L~~~f~~~~~ 117 (123)
T 2dat_A 106 IVLQSVFKSARQ 117 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.79 E-value=0.024 Score=58.43 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|++| .+-
T Consensus 28 ~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 101 (126)
T 3mqm_A 28 SRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVG-----RDV 101 (126)
T ss_dssp TCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHH-----HHH
T ss_pred CCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 578899999 99999999999999999999876 7789999999877777777654 788888 677
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|.++.+
T Consensus 102 ~~L~~~f~~~~~ 113 (126)
T 3mqm_A 102 CRLRKAYYNARH 113 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766665443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=1.5 Score=53.64 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~ 1099 (1953)
.+.+|.-+.|+|||..+-++..++... ....+++.|....++..+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 356899999999998887777666543 2233555554444443333333210
Q ss_pred cccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc---hhHHHHHhhhc-ccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
....+.. .+ ....++|||||.|.+... ...+...+..+ .....+++|.+
T Consensus 183 -------~~~~~~~---~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 -------KLNEFRE---KY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp -------CHHHHHH---HH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred -------cHHHHHH---Hh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0011111 01 125789999999999752 23344455443 33356666654
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.36 E-value=1.6 Score=49.60 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=26.8
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+..+|||||+|++... ...+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45789999999998532 23345555555566677777654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.20 E-value=1.1 Score=51.93 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++.++..+...+... ....+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555544333222 33456789999999999888777766543
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.01 E-value=5.7 Score=47.08 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=29.1
Q ss_pred cHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~-WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|+-|..-|. ++..... .+.+.+|.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554 3333332 3344578999999999999888877764
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=86.35 E-value=3.4 Score=51.90 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecC-CCCHHHHHHHHHHhhcCCCCccEEEEec--ccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RAA 1407 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGikylRLDG-sTs~eeRqeaIerFNs~ds~ifVfLLST--rAG 1407 (1953)
.+.+.|..+ ...+.++|||+.....++.+.+. .++.+.. .| +++ +..+++.|+..+. .+|+++ ...
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~-q~~~~~---~~~~~~~~~~~~~---~vl~~v~gg~~ 449 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYV-ESEDSS---VEDLYSAISANNK---VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEE-CCSSCC---HHHHHHHTTSSSS---CEEEEESSCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEE-cCCCCC---HHHHHHHHHhcCC---eEEEEEeccee
Confidence 344444443 44567899988888888777762 3444433 33 333 4567888863222 366665 799
Q ss_pred ccccCCc-----cCCeEEEcCCCC
Q 000169 1408 GRGLNLQ-----SADTVIIYDPDP 1426 (1953)
Q Consensus 1408 GeGLNLQ-----aADtVIifDppW 1426 (1953)
.+|||++ .+..||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 378999987665
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=85.58 E-value=0.3 Score=50.42 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (1953)
.....+.+|.-+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345677899999999999766444
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.55 E-value=1.2 Score=50.74 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=25.8
Q ss_pred CccEEEcccccccCCch-hHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
+..+|||||+|.+.... ..+.+.+.......++++++++
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 47899999999985322 2344455555566677777655
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=84.87 E-value=0.034 Score=57.00 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .||++| .+-
T Consensus 27 ~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 100 (120)
T 3ljw_A 27 SGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVF-----KDA 100 (120)
T ss_dssp TSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 99999999999999999999877 7789999999877666666644 677777 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.|.+
T Consensus 101 ~~L~~~f~~ 109 (120)
T 3ljw_A 101 NSIKKIFYM 109 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=84.86 E-value=1.5 Score=51.26 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhhcCC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1002 RDYQIVGLQWMLSLYNNK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+..+..+.++......+ .+.+|.-+.|+|||..+-++...+ +...|++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccch
Confidence 466677777777665443 356899999999998887776554 222366555543
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=84.61 E-value=0.036 Score=57.10 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 34 ~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 107 (124)
T 3mb4_A 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIY-----KDA 107 (124)
T ss_dssp TSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 579999999 88999999999999999999877 7789999999877777767654 778887 565
Q ss_pred cccchhhhcc
Q 000169 1797 QVLQPKIKRK 1806 (1953)
Q Consensus 1797 ~~~q~~~~~k 1806 (1953)
..|+-.+.++
T Consensus 108 ~~L~~~f~~~ 117 (124)
T 3mb4_A 108 LVLHKVLLET 117 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=84.13 E-value=0.031 Score=58.00 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=66.1
Q ss_pred cCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCC
Q 000169 1725 SSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEG 1793 (1953)
Q Consensus 1725 ~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~ 1793 (1953)
++.+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+||
T Consensus 28 d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~----- 101 (129)
T 2grc_A 28 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY----- 101 (129)
T ss_dssp CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----
T ss_pred cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence 445788999999 88999999999999999999877 7789999999877666666654 788888
Q ss_pred ccccccchhhhcccccccc
Q 000169 1794 EDEQVLQPKIKRKRSIRVR 1812 (1953)
Q Consensus 1794 e~~~~~q~~~~~krs~~~r 1812 (1953)
.+-..|+-.|.++.+....
T Consensus 102 ~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 102 EDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 7777787777776554443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.11 E-value=2.7 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
..+.+|.-+.|+|||..+-++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999888766543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.09 E-value=1.4 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.||.-+.|+|||..+-++... ...+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhccc
Confidence 356789999999999888666432 12355555555454433
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.03 E-value=4.1 Score=46.12 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-+||.|||...+-.+..+.. ...++||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 67888999999777666544432 234688888753
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=83.96 E-value=2.8 Score=48.75 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=24.6
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.+.+|||||+|.+... ...+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 5789999999998432 2234444444455667777765
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=2.3 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998886665543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=83.63 E-value=0.86 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (1953)
.++.-.+|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3678899999999887765443
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.59 E-value=0.047 Score=57.94 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=66.8
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCC
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRD 1791 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~ 1791 (1953)
.-...+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+||
T Consensus 39 ~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~--- 114 (150)
T 3tlp_A 39 AREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVY--- 114 (150)
T ss_dssp CBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH---
T ss_pred HHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH---
Confidence 44455789999999 99999999999999999999977 7799999999888777777654 889999
Q ss_pred CCccccccchhhhcccc
Q 000169 1792 EGEDEQVLQPKIKRKRS 1808 (1953)
Q Consensus 1792 ~~e~~~~~q~~~~~krs 1808 (1953)
.+-..|+-.+.++..
T Consensus 115 --~~A~~L~~~f~~~~~ 129 (150)
T 3tlp_A 115 --NDAHILEKLLKEKRK 129 (150)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 777888877766543
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=82.89 E-value=1.4 Score=54.10 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.||.-+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887766543 22355555555555444
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.88 E-value=0.053 Score=56.47 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..+-..|+.. .+|+|+ .+-
T Consensus 36 ~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (130)
T 3k2j_A 36 QGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIY-----KRV 109 (130)
T ss_dssp SSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 679999999 89999999999999999999987 7899999999876666666544 677776 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.+.+
T Consensus 110 ~~L~~~f~~ 118 (130)
T 3k2j_A 110 LKLQQVMQA 118 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.34 E-value=2 Score=49.59 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.+.+|.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 34567899999999998886665432 2355555544454444
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.09 E-value=1.1 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
.+.+|.-+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887776543
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.16 E-value=0.056 Score=54.99 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=59.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..+-..|+.. .+|++| ..-
T Consensus 24 ~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 97 (116)
T 3iu5_A 24 QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEY-----KAA 97 (116)
T ss_dssp TCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 578899999 88999999999999999999876 7789999999877776666654 777777 555
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.+.++.+
T Consensus 98 ~~L~~~f~~~~~ 109 (116)
T 3iu5_A 98 CKLWDLYLRTRN 109 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566655555443
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.14 E-value=2.2 Score=50.59 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL 1061 (1953)
..+.+|.-+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4567899999999998887665432 235555554433
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=80.43 E-value=2.5 Score=48.83 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=26.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.+|.-+.|+|||..+-++...+ ..+++.|....+...|
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGN 76 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhcc
Confidence 456788999999999887776554 2356666555554333
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=80.24 E-value=1.1 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+.+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478999999999988877766553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.08 E-value=4.1 Score=47.17 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|+.+++.+...+... ..+...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333321 22345689999999999888776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1953 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 6e-47 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 2e-44 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 5e-31 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 7e-17 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-14 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 6e-14 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 9e-06 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 2e-05 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 7e-04 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 8e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.002 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.004 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 166 bits (421), Expect = 6e-47
Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 28/252 (11%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++ LR YQI G WM + LAD+MGLGKT+Q +A+ + +
Sbjct: 5 EPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELT 62
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY +
Sbjct: 63 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL--------EDYDIILTTYAVL 114
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171
+ D +L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS+
Sbjct: 115 LRDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSI 173
Query: 1172 LNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
+ L P + + F F+ P +K L I+ PF+LRR
Sbjct: 174 MTFLNPGLLGSYSEFKSKFATPIKKGDNMA---------------KEELKAIISPFILRR 218
Query: 1232 RVED--VEGSLP 1241
D + LP
Sbjct: 219 TKYDKAIINDLP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 161 bits (408), Expect = 2e-44
Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 18/249 (7%)
Query: 998 AGTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQR----SRLFSQEVAALKFN 1102
+++ P++++ NW +E+ KWL G+KD+ SQ+ +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDL E +SL++ + + + F F P K +AD + + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR---DADASDKDRAAGEQKLQELIS 289
Query: 1223 ILEPFMLRR 1231
I+ ++RR
Sbjct: 290 IVNRCLIRR 298
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 124 bits (311), Expect = 5e-31
Identities = 85/350 (24%), Positives = 142/350 (40%), Gaps = 68/350 (19%)
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
LP K+ V+ C ++ +Q +Y K+ + K+ + +
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFL------------KQAKPVESLQTGKISVSSLSSI 55
Query: 1299 MELRKTCNHPLLNYPYFSDLSK----------------DFLVKSCGKLWILDRILIKLQR 1342
L+K CNHP L Y + + GK+ +LD IL +
Sbjct: 56 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT 115
Query: 1343 -TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R + FN+ S FIF+
Sbjct: 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 175
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461
LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+ + + +
Sbjct: 176 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST------ 229
Query: 1462 HQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1521
G+IE I Q +K ++ V++ + +R
Sbjct: 230 --------------------------GTIEEKIL-QRQAHKKALSSCVVDEEQDVERHFS 262
Query: 1522 EERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 1571
L +L +E+ +T HD R + + D
Sbjct: 263 LGELRELFSL--NEKTLSDT-HD---RFRCRRCVNGRQVRPPPDDSDCTC 306
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (196), Expect = 7e-17
Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 53/289 (18%)
Query: 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302
K+ + C ++ Q+A+Y +D +R + + ++L+
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-----------KGMILSTLLKLK 49
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1362
+ +HP L V+ GK+ I+ + G ++ +F+ + I+
Sbjct: 50 QIVDHPALLKGGE------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 103
Query: 1363 YLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
++ + G S ++R+ I F ++ S FI L S++A G G+NL SA+ VI
Sbjct: 104 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSANRVIH 162
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
+D NP E+QA R +RIGQ R V V + +V
Sbjct: 163 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV-------------------------- 196
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG-RFDQRTTHEERRMTLE 1529
G++E I + +K + ++I++G + + EE R +E
Sbjct: 197 ------GTLEEKID-QLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 238
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.4 bits (179), Expect = 3e-14
Identities = 32/266 (12%), Positives = 79/266 (29%), Gaps = 29/266 (10%)
Query: 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS--------IVLRCRMSAIQSAIYD 1261
E + L ++L + + S P + ++ M+ +
Sbjct: 12 PEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRG 71
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK- 1320
+ + + K L + + +
Sbjct: 72 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISL 131
Query: 1321 ----DFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
+ K+ L I+ + ++ ++++F+ + + L + +R
Sbjct: 132 LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 191
Query: 1375 DGTTSLEDR--------ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1426
G S E+ + + +F + + L++ GL++ D V+ Y+P P
Sbjct: 192 VGQASKENDRGLSQREQKLILDEFARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVP 248
Query: 1427 NPKNEEQAVARAHRIGQKREVKVIYM 1452
+ Q R R G+ +VI +
Sbjct: 249 SAIRSIQ---RRGRTGRHMPGRVIIL 271
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.3 bits (171), Expect = 6e-14
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 25/169 (14%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
P +LRDYQ L+ L G + G GKT A + +
Sbjct: 62 TPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHV-----AMAAINELSTP 112
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+++ A+ WK L + + K+ + +TY+
Sbjct: 113 TLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTV-------------STYDSA 159
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160
+ KL + +I DE + + RL LT T
Sbjct: 160 YVNAEKLGN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 27/213 (12%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
L + ++ + Y+ + + R + + +A+ + +
Sbjct: 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYK-------QFLRARGITLRRAEDFNKIVMAS 54
Query: 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
+ + ++ S K+ L IL + + ++++F+ +L+
Sbjct: 55 GYDERAYEALRAW-----EEARRIAFNSKNKIRKLREILERHR--KDKIIIFTRHNELVY 107
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
+ + I TS E+RE + + F ++S + G+++ A+
Sbjct: 108 RISKVFL-----IPAITHRTSREEREEIL---EGFRTGRFRAIVSSQVLDEGIDVPDANV 159
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+I + + Q + R R + ++ V+Y
Sbjct: 160 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 192
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 12/189 (6%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ +A++ G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAPT 61
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-MYDRSKL 1118
LV +E + L ++ V ++S + A ++ T ++
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 1119 SKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRR-LLLTGTPLQNDLKELWSLLNLL 1175
S D I+ DEA R +AR+ R + LT +P + +++ ++N L
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP-GSTPEKIMEVINNL 180
Query: 1176 LPEVFDNRK 1184
E + R
Sbjct: 181 GIEHIEYRS 189
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 45.1 bits (105), Expect = 9e-06
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 17/150 (11%)
Query: 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP 1074
+ + +L G GKT + + I + L + ++ +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134
+ + + + + V+W+ II+DEA +
Sbjct: 63 FHTQAFSAHGSGR------------EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 110
Query: 1135 KDRESVLARDLDRYRCQRR----LLLTGTP 1160
D S+ AR +R + +L+T TP
Sbjct: 111 -DPASIAARGWAAHRARANESATILMTATP 139
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 46.0 bits (108), Expect = 2e-05
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 16/181 (8%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
YQ + L LN G+++ L Y +E LIIVP
Sbjct: 112 IEPHWYQKDAVFEGLVNRRRILN----LPTSAGRSLIQALLARYYLENYEGKI--LIIVP 165
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L + + + + A V+V T++ + + K
Sbjct: 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDA----PVVVGTWQ-TVVKQPK 220
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQRRLLLTGTPLQNDLKELWSLLNLLL 1176
+ ++ DE + ++ + C + L+G+ + +
Sbjct: 221 EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRDGKANI-MQYVGMFG 277
Query: 1177 P 1177
Sbjct: 278 E 278
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 40.2 bits (93), Expect = 7e-04
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++ I +++R R L+ + K+ + L +YL+ + + +R I D
Sbjct: 20 LIGEIRERVER-NERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR 78
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-----PNPKNEEQAVARAHRIGQKRE 1446
D + I GL++ V I D D + ++ Q + RA R
Sbjct: 79 LGKYDVLV---GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 1447 VKVIYMEAVVDKISSHQKE 1465
+ +I+ + +
Sbjct: 136 IMYADTITKSMEIAIQETK 154
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.9 bits (95), Expect = 8e-04
Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
+ L IL ++ G ++++ + + + E L+ + ++
Sbjct: 13 SISTLSSIL---EKLGTGGIIYARTGEEAEEIYESLK------NKFRIGIVTATKKGDYE 63
Query: 1389 DFNSHDSDCFIFLLSIRA-AGRGLNLQSA-DTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
F + D I RGL+L + + + + +
Sbjct: 64 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMV 119
Query: 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
+ Y+ VD+I E ++ + GK+R + ++ + D+
Sbjct: 120 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER--PQAKDVVVREGEVIFPDLR 177
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFD 1566
+ +GR R LL D+ + L ++ D +L
Sbjct: 178 TYIQGSGRTS-RLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSR 236
Query: 1567 QMDEE 1571
++DE
Sbjct: 237 ELDES 241
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.9 bits (87), Expect = 0.002
Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 23/144 (15%)
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIY 1080
L G GK+ +V A L++ P+ + + + K I
Sbjct: 11 AHLHAPTGSGKSTKV---PAAYAAQGYKV---LVLNPSVAATLGFGAYMSKAHGVDPNIR 64
Query: 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK---DR 1137
T +F+ D II DE
Sbjct: 65 TGVRTITTGS----------PITYSTYGKFLADGGCSGGAYD--IIICDECHSTDATSIL 112
Query: 1138 ESVLARDLDRYRCQRRLLL-TGTP 1160
D R ++L T TP
Sbjct: 113 GIGTVLDQAETAGARLVVLATATP 136
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.6 bits (86), Expect = 0.004
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 1322 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
V + L R+L + L+F + L L+ I G S
Sbjct: 9 VEVNENERFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQS 65
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
RE I F I + RG+++ + VI Y NP++ + R R
Sbjct: 66 QREKVIRLFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 122
Query: 1442 GQKREVKVIYMEAVVDKISSHQK 1464
G+K + I K+ ++
Sbjct: 123 GKKGKAISIINRREYKKLRYIER 145
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1953 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.81 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.75 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.74 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.74 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.74 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.74 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.72 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.72 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.7 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.7 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.63 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.63 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.55 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.54 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.5 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.47 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.37 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.36 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.33 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.22 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.19 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.17 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.16 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.16 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.14 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.14 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.1 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.07 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.03 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.98 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.96 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.96 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.94 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.85 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.79 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.72 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.13 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.01 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.64 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.56 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.22 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.44 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 95.27 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.67 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 93.61 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.05 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.34 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 89.13 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.23 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.04 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.95 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.79 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 85.64 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.62 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.66 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 82.59 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.17 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-39 Score=359.79 Aligned_cols=225 Identities=33% Similarity=0.666 Sum_probs=197.8
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
-+|..+.. +|+|||++||.||..+...+.|||||||||||||+++|+++.+++. .+...++|||||.+++.+|.+|+.
T Consensus 4 ~~P~~~~~-~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~-~~~~~~~LIv~p~~l~~~W~~e~~ 81 (230)
T d1z63a1 4 LEPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELS 81 (230)
T ss_dssp CCCCSCSS-CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHH
T ss_pred cCchhhhc-chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhh-cccccccceecchhhhhHHHHHHH
Confidence 47888865 8999999999999999999999999999999999999999988875 566679999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1071 KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+|++...+..+.+..... ...+++|+|+||+.+.+. ..+..++|++||+||||+++|..+..++++..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~--------~~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a 152 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVLLRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 152 (230)
T ss_dssp HHCTTSCEEECSSSTTSC--------CGGGSSEEEEEHHHHTTC-HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred hhcccccceeeccccchh--------hccCcCEEEeeHHHHHhH-HHHhcccceEEEEEhhhcccccchhhhhhhhhhcc
Confidence 999998888776554322 245689999999999765 44677899999999999999999999999999999
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.+||+|||||++|++.|||++++||+|+.|++...|.+.|..++.... .....+|+.+++||++|
T Consensus 153 ~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~---------------~~~~~~L~~~l~~~~lR 217 (230)
T d1z63a1 153 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILR 217 (230)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEEC
T ss_pred ceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccC---------------HHHHHHHHHHhhccEEE
Confidence 999999999999999999999999999999999999999887765431 12355789999999999
Q ss_pred HHHhh--hhcCCC
Q 000169 1231 RRVED--VEGSLP 1241 (1953)
Q Consensus 1231 RlKkD--VekdLP 1241 (1953)
|+|.| |.++||
T Consensus 218 r~K~d~~v~~dLP 230 (230)
T d1z63a1 218 RTKYDKAIINDLP 230 (230)
T ss_dssp CCTTCHHHHTTSC
T ss_pred EecCCccHhhcCC
Confidence 99999 677888
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=1.2e-39 Score=373.17 Aligned_cols=230 Identities=27% Similarity=0.457 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
..|||||++||+||+.++ .++.|||||||||||||+|+|+++.+++..... .+++|||||.+++.||.+||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 489999999999998764 456789999999999999999999998875443 34699999999999999999
Q ss_pred HHHCCC-CeEEEEecchhh-HhHHHHHHH----hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1070 HKWLPS-VSCIYYVGAKDQ-RSRLFSQEV----AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1070 ~KwaPs-lkVvvy~Gs~de-Rk~l~~qei----~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
.+|++. ..+++++|.... ......... ....++|+|+||+.+.++...+..++|++|||||||+++|..++.++
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn~~s~~~~ 213 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeecccccccccccchhhh
Confidence 999975 555556554433 222211111 12356899999999999999999999999999999999999999999
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhkl 1223 (1953)
++..+.+.+||+|||||++|++.|||++++||.|+.|++...|.++|..|+.........+. ........+.+|+.+
T Consensus 214 a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~---~~~~~~~~l~~L~~~ 290 (298)
T d1z3ix2 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK---DRAAGEQKLQELISI 290 (298)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH---HHHHHHHHHHHHHHH
T ss_pred hhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876544333322 222333457789999
Q ss_pred hhHHHHHH
Q 000169 1224 LEPFMLRR 1231 (1953)
Q Consensus 1224 LrPFmLRR 1231 (1953)
++||+|||
T Consensus 291 l~~~~lRR 298 (298)
T d1z3ix2 291 VNRCLIRR 298 (298)
T ss_dssp HHHHEECC
T ss_pred hhhheeCC
Confidence 99999997
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=7.2e-38 Score=367.84 Aligned_cols=235 Identities=33% Similarity=0.518 Sum_probs=196.0
Q ss_pred hhh-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1235 DVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1235 DVe-kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
+|+ ++||+|++++++|+||+.|+.+|+.+........... .. .....+++.++.||++||||+|+..
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~-------~~-----~~~~~~L~~l~~LRkiCnHP~L~~~ 70 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-------TG-----KISVSSLSSITSLKKLCNHPALIYE 70 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC-------TT-----CCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhh-------cC-----CchHHHHHHHHHHHHHhCCHHHhhh
Confidence 454 6899999999999999999999998865432111100 00 0123456788999999999987431
Q ss_pred C-------cc---------ccchhhhhhcccHHHHHHHHHHHHH-hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecC
Q 000169 1314 Y-------FS---------DLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376 (1953)
Q Consensus 1314 ~-------l~---------dls~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQft~~LDILed~L~~rGikylRLDG 1376 (1953)
. +. ..........|+|+.+|.+||..+. ..|+||||||+|+.++++|+++|..+|+.|++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G 150 (346)
T d1z3ix1 71 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 150 (346)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred hhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhcccccccc
Confidence 1 00 0011223567999999999999875 67899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhh
Q 000169 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 1456 (1953)
Q Consensus 1377 sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVE 1456 (1953)
+++.++|..++++||.++.+.+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus 151 ~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~-- 228 (346)
T d1z3ix1 151 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS-- 228 (346)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE--
T ss_pred chhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEe--
Confidence 999999999999999888888999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccc
Q 000169 1457 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 1514 (1953)
Q Consensus 1457 EkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGk 1514 (1953)
.+||||+|+++ +..|..+.+.|++.+.
T Consensus 229 ------------------------------~~TiEe~i~~~-~~~K~~l~~~v~~~~~ 255 (346)
T d1z3ix1 229 ------------------------------TGTIEEKILQR-QAHKKALSSCVVDEEQ 255 (346)
T ss_dssp ------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCSS
T ss_pred ------------------------------CCCHHHHHHHH-HHHHHHHHHHHhCCch
Confidence 37999999985 5778888888887654
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.7e-35 Score=323.80 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=173.2
Q ss_pred ceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhh
Q 000169 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF 1322 (1953)
Q Consensus 1243 KvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~ 1322 (1953)
|++.+++|+||+.|+++|+.+.......+... ........+++.+++||++||||+++.... .
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~-----------~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~------~ 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALLKGGE------Q 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHHHHHHHTTCTHHHHCSC------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----------ccchhHHHHHHHHHHHHhhhcCCccccccc------c
Confidence 67899999999999999998876432111110 011123456778899999999998865432 2
Q ss_pred hhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEE
Q 000169 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (1953)
Q Consensus 1323 Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfL 1401 (1953)
.+..|+|+..|.++|..+...|+||||||+|+.++++|+.+|... |+.+.++||+++.++|..++++|++ +..+.|||
T Consensus 64 ~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vll 142 (244)
T d1z5za1 64 SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIV 142 (244)
T ss_dssp CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH-CTTCCEEE
T ss_pred chhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhc-cccchhcc
Confidence 345689999999999999999999999999999999999999765 9999999999999999999999987 44568999
Q ss_pred EeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhc
Q 000169 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481 (1953)
Q Consensus 1402 LSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~ 1481 (1953)
+++.+||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus 143 ~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~--------------------------- 195 (244)
T d1z5za1 143 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------------------- 195 (244)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE---------------------------
T ss_pred ccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999976
Q ss_pred ccchhhhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000169 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1482 gkd~yigSIEE~IlerLq~~KldIddkVIqAG 1513 (1953)
.+|||+.|++. ...|.++++.+++.+
T Consensus 196 -----~~Tiee~i~~~-~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 196 -----VGTLEEKIDQL-LAFKRSLFKDIISSG 221 (244)
T ss_dssp -----TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred -----CCCHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 37999999985 467888888888764
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=7.9e-21 Score=204.89 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=135.0
Q ss_pred cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 000169 1238 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317 (1953)
Q Consensus 1238 kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d 1317 (1953)
+.|||.....++|+|++.++..|+.+.......+..... .......+ . ..++..+.++.... .+..
T Consensus 1 k~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~--~~~~~~~~-----~------~~~~~~~~~~~~~~-~~~~ 66 (200)
T d2fwra1 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGI--TLRRAEDF-----N------KIVMASGYDERAYE-ALRA 66 (200)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCC--TTTCCSSS-----T------TTTTTTCCSSSSST-TTHH
T ss_pred CcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccc--chhhhHHH-----H------HHHHHhcCCHHHHH-HHHH
Confidence 468999999999999999999997653321110000000 00000000 0 00011111111100 0000
Q ss_pred --cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCC
Q 000169 1318 --LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (1953)
Q Consensus 1318 --ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds 1395 (1953)
.........+.|+..|.++|.+ ..++|+||||++..+++.|.+.| .+..+||.++.++|..++++|++++.
T Consensus 67 ~~~~~~i~~~~~~K~~~l~~ll~~--~~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 67 WEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRF 139 (200)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSC
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHh--CCCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCe
Confidence 0011223456799999999986 46789999999999999998877 34568999999999999999997654
Q ss_pred CccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc-eEEEEEEeh
Q 000169 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (1953)
+ +|++|+++++||||+.|++||+||++|||..++||+||++|+||.| .|+||+|++
T Consensus 140 ~---vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 140 R---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp S---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred e---eeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 4 4779999999999999999999999999999999999999999965 689999875
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.7e-19 Score=195.82 Aligned_cols=142 Identities=28% Similarity=0.303 Sum_probs=110.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHH
Q 000169 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHK 1071 (1953)
Q Consensus 993 Ps~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~K 1071 (1953)
|..-...+|||||.+++++++. +.+|||+++||+|||++++.++..+ .+++|||||. .++.||.++|.+
T Consensus 63 ~~~~~~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~~~ 132 (206)
T d2fz4a1 63 PYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGI 132 (206)
T ss_dssp CCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCCCCCCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHHHh
Confidence 4333345899999999988764 5678999999999999988777543 3589999995 588999999999
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1072 waPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
|.+. .+..+.|... ....++|+||+.+......+. .+|++|||||||++++. .+.+.+..+.+.
T Consensus 133 ~~~~-~~~~~~~~~~------------~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH~~~a~--~~~~i~~~~~~~ 196 (206)
T d2fz4a1 133 FGEE-YVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE--SYVQIAQMSIAP 196 (206)
T ss_dssp GCGG-GEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT--THHHHHHTCCCS
T ss_pred hccc-chhhcccccc------------cccccccceehhhhhhhHhhC-CcCCEEEEECCeeCCcH--HHHHHHhccCCC
Confidence 8754 3445554321 234799999999987755543 37999999999999753 455667778899
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
++|+||||+
T Consensus 197 ~~lgLTATl 205 (206)
T d2fz4a1 197 FRLGLTATF 205 (206)
T ss_dssp EEEEEEESC
T ss_pred cEEEEecCC
Confidence 999999997
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=1.9e-18 Score=182.91 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=110.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|.++|.. ..+.|+||||++..+++.|..+|...|+.+..++|+++..+|..++..|+.+... +|++|
T Consensus 15 ~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~T 89 (171)
T d1s2ma2 15 EERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCS 89 (171)
T ss_dssp CGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEES
T ss_pred CHHHHHHHHHHHHHh--CCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccch
Confidence 345699999999986 3678999999999999999999999999999999999999999999999987666 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
+++++|||++.+++||+||+|||+..|+||+||++|.|+++.|..
T Consensus 90 d~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~ 134 (171)
T d1s2ma2 90 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAIN 134 (171)
T ss_dssp SCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEE
T ss_pred hHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEE
Confidence 999999999999999999999999999999999999999876543
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.8e-18 Score=179.87 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=111.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
..+.|+..|.++|..+ .+.|+||||++...++.|.++|...|+++..+||+++.++|..+++.|++++.. +|++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 4567999999999875 567999999999999999999999999999999999999999999999976655 68999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+++++|+|++.+++||+||+|||+..|+|++||++|.|++..|..+
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l 130 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 130 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEE
Confidence 9999999999999999999999999999999999999988766433
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.74 E-value=5.7e-18 Score=189.67 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=82.0
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE-
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI- 1420 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI- 1420 (1953)
..++++||||.....++.+..+|...|+.+..+||.+....| ..|..+... +|++|.+.+.|+|+ .+++||
T Consensus 176 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~---~lvaT~~~~~G~~~-~~~~Vi~ 247 (305)
T d2bmfa2 176 DFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWD---FVVTTDISEMGANF-KAERVID 247 (305)
T ss_dssp SSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCS---EEEECGGGGTTCCC-CCSEEEE
T ss_pred hhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchh---hhhhhHHHHhcCCC-CccEEEE
Confidence 457889999999999999999999999999999999865444 456654333 79999999999999 566654
Q ss_pred ---------EcCCC----------CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1421 ---------IYDPD----------PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1421 ---------ifDpp----------WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+||++ -++..++|++||++|.|+.....++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~ 297 (305)
T d2bmfa2 248 PRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297 (305)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred cCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEE
Confidence 34543 46788999999999999887665444
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=4.1e-18 Score=177.60 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|.++|. ..+.++||||++..+++.|..+|...|+.+..++|.++..+|..++++|+.++.. +|++|+
T Consensus 13 ~~~K~~~L~~ll~---~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~ 86 (155)
T d1hv8a2 13 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATD 86 (155)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECT
T ss_pred hHHHHHHHHHHHc---cCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehh
Confidence 3468888888775 3567999999999999999999999999999999999999999999999987665 799999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++++|||++.+++||+||+|||+..|+|++||++|.|++..|.++
T Consensus 87 ~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~ 131 (155)
T d1hv8a2 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 131 (155)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred HHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEE
Confidence 999999999999999999999999999999999999988776544
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=6e-18 Score=178.25 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=106.3
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..|+.+|..++..+ ...++||||++...++.|..+|...|+.+..++|.++..+|..+++.|+.++.. +|++|++
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Tdv 86 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 86 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeecccc
Confidence 46999999998764 568999999999999999999999999999999999999999999999987666 7999999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++|||++.+++||+||+|||+..|+||+||++|.|++..|..+.
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEc
Confidence 999999999999999999999999999999999999987766553
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.72 E-value=7.1e-18 Score=192.03 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=118.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs-- 1075 (1953)
.+||+||.+++.+++. +.+|||+.+||+|||+++++++.++... ...++|||||. +|+.||.++|.+|...
T Consensus 112 ~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~--~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhc--ccceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 5899999999999986 5679999999999999998888776653 23589999996 6999999999998743
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
..+....+..... .......+|+|+|++.+.+....+. -.|++||+||||++++. .+...+..+ .+.+||
T Consensus 186 ~~~~~~~~g~~~~------~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~~a~--~~~~il~~~~~~~~rl 256 (282)
T d1rifa_ 186 AMIKKIGGGASKD------DKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSST------TCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ccceeecceeccc------ccccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCCCch--hHHHHHHhccCCCeEE
Confidence 2333333322111 1112356899999999876543332 36999999999999742 345556665 688999
Q ss_pred EecccCCCCCHHHHHHHHhhhcc
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
+|||||-..... .|.|..++.|
T Consensus 257 GlTaT~~~~~~~-~~~l~g~~Gp 278 (282)
T d1rifa_ 257 GLSGSLRDGKAN-IMQYVGMFGE 278 (282)
T ss_dssp EECSSCCTTSTT-HHHHHHHHCE
T ss_pred EEEeecCCCCcc-eEEEeeecCC
Confidence 999999655543 4556655544
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=4.7e-18 Score=192.02 Aligned_cols=122 Identities=19% Similarity=0.296 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCC--------CHHHHHHHHHHhhcCCCC
Q 000169 1327 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--------SLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1327 SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsT--------s~eeRqeaIerFNs~ds~ 1396 (1953)
++|+..|.++|.++. ..++|+||||+++.+++.+.+.|...|+++..++|.. +..+|..+++.|+++..+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 468999999988764 4578999999999999999999999999999998854 445789999999986554
Q ss_pred ccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1397 ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+|++|+++++||||+.|++||+||+||||..|+||+||++|.+ ++.||.|++
T Consensus 222 ---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~---~~~~~~l~~ 273 (286)
T d1wp9a2 222 ---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM---PGRVIILMA 273 (286)
T ss_dssp ---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEE
T ss_pred ---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC---CCEEEEEEe
Confidence 6899999999999999999999999999999999999998854 455666654
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3e-17 Score=173.94 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..|+..|..+|... .+.++||||+....++.+..+|...|+.+..++|+++.++|..+++.|+.+... +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccch
Confidence 35899999998764 578999999999999999999999999999999999999999999999987777 7999999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++|||++.+++||+||+||++..|+||+||++|.|++..|..+.
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~ 138 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 138 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEE
Confidence 999999999999999999999999999999999999887665443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.70 E-value=1.1e-16 Score=170.00 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=117.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP--sl 1076 (1953)
++|+||.++++++. +.|+|++.+||+|||++++.++...... ..+++|||||. .|+.||.++|.++++ ..
T Consensus 9 ~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~ 81 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (200)
T ss_dssp CCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHh--cCCcEEEEcCchHHHHHHHHHHHHhhccccc
Confidence 68999999999875 3478999999999999888777666543 34689999996 588999999999975 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHH--Hh-hhcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLAR--DL-DRYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsr--aL-k~L~a~ 1151 (1953)
.+..+.+....... .....+++++++|++.+.... ..+...+|++||+||||++.+....... .+ ......
T Consensus 82 ~v~~~~~~~~~~~~----~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 157 (200)
T d1wp9a1 82 KIVALTGEKSPEER----SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (200)
T ss_dssp GEEEECSCSCHHHH----HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred ceeeeecccchhHH----HHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCC
Confidence 67777665443322 122345789999999997652 3344457899999999999765433222 11 122344
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcc
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
+.|+|||||- +...++..++..+..
T Consensus 158 ~~l~~SATp~-~~~~~~~~~~~~l~~ 182 (200)
T d1wp9a1 158 LVIGLTASPG-STPEKIMEVINNLGI 182 (200)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTC
T ss_pred cEEEEEecCC-CcHHHHHHHHhcCCc
Confidence 6789999993 444555555555543
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=6.9e-16 Score=167.85 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=110.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|..+|.. ..+.++||||+....++.|..+|...|+.+..+||+++.++|..+++.|+.+... +|++|
T Consensus 13 ~~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaT 87 (200)
T d1oywa3 13 EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVAT 87 (200)
T ss_dssp ECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred cCCcHHHHHHHHHHh--cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEec
Confidence 334577777777765 3577999999999999999999999999999999999999999999999987666 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++|+|||++.+++||+||+|||+..|+|++||++|.|++..+.+++
T Consensus 88 d~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 88 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred chhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999887776654
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.55 E-value=1.1e-14 Score=156.28 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=96.1
Q ss_pred HHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCe
Q 000169 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418 (1953)
Q Consensus 1339 kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADt 1418 (1953)
+....+.++||||.....++.|..+|...|+++..+||.++.++|..++++|+++..+ +|++|+++++|||++.+++
T Consensus 26 ~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~rGiDip~v~~ 102 (181)
T d1t5la2 26 ERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLDIPEVSL 102 (181)
T ss_dssp HHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCSSSCCCTTEEE
T ss_pred HHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHHccCCCCCCCE
Confidence 3345788999999999999999999999999999999999999999999999998777 8999999999999999999
Q ss_pred EEEcCCC-----CCchhHHhhhhcccccCCc
Q 000169 1419 VIIYDPD-----PNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1419 VIifDpp-----WNP~~d~QAiGRAhRIGQK 1444 (1953)
||+||+| +++..|+||+||++|.|..
T Consensus 103 VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 103 VAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp EEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred EEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 9999999 5788999999999999964
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=2.6e-14 Score=152.55 Aligned_cols=102 Identities=22% Similarity=0.280 Sum_probs=94.4
Q ss_pred HHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1340 LkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
....|.++||||....+++.|..+|...|++...+||+++..+|.+++++|..++.+ +|++|+++++|||++.+++|
T Consensus 27 ~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~V~~V 103 (174)
T d1c4oa2 27 RAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEVSLV 103 (174)
T ss_dssp HHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTEEEE
T ss_pred HHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCCCcEE
Confidence 346799999999999999999999999999999999999999999999999987766 79999999999999999999
Q ss_pred EEcCCCC-----CchhHHhhhhcccccCCc
Q 000169 1420 IIYDPDP-----NPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1420 IifDppW-----NP~~d~QAiGRAhRIGQK 1444 (1953)
|+||++- +...|+|++||++|-|..
T Consensus 104 i~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 104 AILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred EEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 9999875 457799999999998764
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=2.4e-14 Score=153.41 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-Ce
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-VS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs-lk 1077 (1953)
+|+|||.+++..+.. +.++||+.+||+|||.+++..+...+. ..+++|+|||.. |+.+|..+|.+|++. ..
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~---~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhh---ccCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 699999999988775 778999999999999887655554432 345899999966 889999999999874 45
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCch--hHHHHHhhhc----c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY----R 1149 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L----~ 1149 (1953)
+..+.|....+. .....++|+++|+..+...... ..-..+++||+||+|++.+.. ......+..+ .
T Consensus 98 v~~~~~~~~~~~------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~ 171 (202)
T d2p6ra3 98 IGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (202)
T ss_dssp EEEECSSCBCCS------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred ceeeccCccccc------ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCC
Confidence 556655443331 2245678999999887654221 122367899999999997643 2222233322 2
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccc
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEV 1179 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~i 1179 (1953)
..++|+||||- . ++.++ .+||....
T Consensus 172 ~~~~l~lSATl-~-n~~~~---~~~l~~~~ 196 (202)
T d2p6ra3 172 ALRVIGLSATA-P-NVTEI---AEWLDADY 196 (202)
T ss_dssp TCEEEEEECCC-T-THHHH---HHHTTCEE
T ss_pred CCcEEEEcCCC-C-cHHHH---HHHcCCCe
Confidence 34689999992 2 34444 35554443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.3e-13 Score=151.01 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=107.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV- 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl- 1076 (1953)
++++++|..++..++. +.+.++..+||+|||++++.++.++.. ..+++|||+|+. |+.||.++|.+|+...
T Consensus 42 ~~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~---~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 42 GEPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHH---hcCeEEEEeccHHHHHHHHHHHHHHHHHcC
Confidence 3789999999988876 788999999999999887666655443 335899999965 8999999999986432
Q ss_pred -----eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh--c-
Q 000169 1077 -----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR--Y- 1148 (1953)
Q Consensus 1077 -----kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~--L- 1148 (1953)
.+..+.+........ .......+++|+|+|++++.++...+. +|++|||||+|.+........+.+.. |
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~Ilv~Tp~~l~~~~~~~~--~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~ 191 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKE-NFMQNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFH 191 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHH-HHHHSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEE
T ss_pred CceEEEEeeeecccchhhhh-hhhccccccceeccChHHHHHhhhhcC--CCCEEEEEChhhhhhcccchhHHHHhcCCh
Confidence 223333332222111 111234578999999999987655443 68999999999985433322222221 1
Q ss_pred -----------ccceeEEecccCCCCCHHHHH
Q 000169 1149 -----------RCQRRLLLTGTPLQNDLKELW 1169 (1953)
Q Consensus 1149 -----------~a~~RLLLTGTPLQNnL~ELw 1169 (1953)
.....+++|||+-......|+
T Consensus 192 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~ 223 (237)
T d1gkub1 192 YDLKTKSWVGEARGCLMVSTATAKKGKKAELF 223 (237)
T ss_dssp EETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEeCCCCcccHHHHH
Confidence 112368889997554444443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.4e-13 Score=141.75 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=113.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|||||.+++.-++. +.++|++.+||+|||+.++..+.. ..+++++|+|.. ++.+|..+|..+.....+
T Consensus 25 ~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~ 94 (206)
T d1oywa2 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAAC 94 (206)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhcccccc
Confidence 799999999988765 678999999999999887554432 346889999975 788899999988654433
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh-------HHHHHhhhcc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRYR 1149 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S-------KlsraLk~L~ 1149 (1953)
............. .........+|+++|+..+..+ ...+...++.++|+||||.+..... .....+..+.
T Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~ 173 (206)
T d1oywa2 95 LNSTQTREQQLEV-MTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173 (206)
T ss_dssp ECTTSCHHHHHHH-HHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT
T ss_pred cccccccccchhH-HHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhCC
Confidence 3333333333222 2344567789999999887644 2334445789999999998865322 1112222334
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcc
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
....++||||+-.....|+...|.+-+|
T Consensus 174 ~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 174 TLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 4568999999733223567666666555
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.36 E-value=2.4e-13 Score=134.13 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=81.3
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~q 1094 (1953)
+++++.++||..+||+|||++++..+...... ....+||++|...+.+|..+. +....+-+.......
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--~~~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~~------- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFSA------- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCCC-------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--cCceeeeeecchhHHHHHHHH---hhhhhhhhccccccc-------
Confidence 46678899999999999999987665544432 235789999987655444332 233332222221111
Q ss_pred HHhhccccEEEEeHHHHHhh-hhcccccCccEEEcccccccCCchhHH---HHHhhhcccceeEEecccC
Q 000169 1095 EVAALKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVL---ARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1095 ei~~~~fdVVITTYEsL~kd-~s~L~kikWd~VIIDEAHrLKN~~SKl---sraLk~L~a~~RLLLTGTP 1160 (1953)
.......+.++++..+... .......+|++|||||||++....... ...+......+.|+|||||
T Consensus 71 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred -ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 1122334666677666443 334445689999999999984322221 1222234566899999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.33 E-value=1.5e-12 Score=130.78 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=85.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~ 1097 (1953)
...+||..+||+|||++++.++. .....+||+||.. ++.||...|.+++.......+.|...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~----------- 70 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI----------- 70 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE-----------
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH------HcCCcEEEEcChHHHHHHHHHHHHHHhhcccccccccccc-----------
Confidence 45689999999999987654432 2345799999976 78889999999987665555544322
Q ss_pred hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH-HHHHhhhc---ccceeEEecccC
Q 000169 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRY---RCQRRLLLTGTP 1160 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK-lsraLk~L---~a~~RLLLTGTP 1160 (1953)
.....++++|+..+....... ..+|++|||||+|++...... +...+..+ .....|+|||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 TTGSPITYSTYGKFLADGGCS-GGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp CCCCSEEEEEHHHHHHTTGGG-GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ccccceEEEeeeeeccccchh-hhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 223468888888876654332 237899999999998643322 33333333 233578999999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=1.5e-11 Score=138.75 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=115.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+|-+-|..+++-+..-...+ -+.+|..+||+|||++++..+...+.. ...++|+||+. |..||...|.+|++.
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---g~q~~~m~Pt~~La~Qh~~~~~~~f~~ 158 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSK 158 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---ccceeEEeehHhhhHHHHHHHHHhhhh
Confidence 368899999999887765433 367999999999999998888777653 24789999976 678899999999974
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hccc
Q 000169 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~a 1150 (1953)
+.+.+++|.. ..|..++. .+..+..+|||.|+..+..+..+ .+..+|||||-|++.-.. ...+. .-..
T Consensus 159 ~~~~v~~l~~~~~~~~r~~~~~-~~~~g~~~iiIGThsl~~~~~~f---~~LglviiDEqH~fgv~Q---r~~l~~~~~~ 231 (264)
T d1gm5a3 159 FNIHVALLIGATTPSEKEKIKS-GLRNGQIDVVIGTHALIQEDVHF---KNLGLVIIDEQHRFGVKQ---REALMNKGKM 231 (264)
T ss_dssp SSCCEEECCSSSCHHHHHHHHH-HHHSSCCCEEEECTTHHHHCCCC---SCCCEEEEESCCCC--------CCCCSSSSC
T ss_pred ccccceeeccccchHHHHHHHH-HHHCCCCCEEEeehHHhcCCCCc---cccceeeeccccccchhh---HHHHHHhCcC
Confidence 6777777754 44555543 46678899999999988755331 256899999999984211 11111 1133
Q ss_pred ceeEEecccCCCCCH
Q 000169 1151 QRRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL 1165 (1953)
.+.|++||||+..++
T Consensus 232 ~~~l~~SATPiprtl 246 (264)
T d1gm5a3 232 VDTLVMSATPIPRSM 246 (264)
T ss_dssp CCEEEEESSCCCHHH
T ss_pred CCEEEEECCCCHHHH
Confidence 568999999998774
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=9.3e-11 Score=126.98 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=110.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
.+.|.|..++..++. +.+.|+..++|+|||+.++..+.............||+||+. +..|..+.+..+. +.
T Consensus 23 ~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 688999999999886 889999999999999998777665543333444689999987 5666666666665 44
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc---hhHHHHHhhhccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L~a 1150 (1953)
+++.++.|......... .......+|+|+|++.+..... .+.-.+..++|+||||+|... ...+...+..+..
T Consensus 99 ~~~~~~~g~~~~~~~~~--~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~ 176 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEE--VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176 (207)
T ss_dssp CCEEEESCCSCHHHHHH--HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceeEEEeccccHHHHHH--HHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCC
Confidence 56676666654443221 2334578999999999876532 233346679999999998652 1223344444544
Q ss_pred c-eeEEecccCCCCCHHHH
Q 000169 1151 Q-RRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1151 ~-~RLLLTGTPLQNnL~EL 1168 (1953)
. ..+++|||- ..++.++
T Consensus 177 ~~Q~il~SAT~-~~~v~~l 194 (207)
T d1t6na_ 177 EKQVMMFSATL-SKEIRPV 194 (207)
T ss_dssp SSEEEEEESCC-CTTTHHH
T ss_pred CCEEEEEeeeC-CHHHHHH
Confidence 4 467889993 4444443
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=9.6e-11 Score=128.69 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
.+.|.|..++.+++. +.+.|+..++|+|||+..+..+...+.........||+||+. +..|-.+++.++. ..+
T Consensus 39 ~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i 114 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114 (222)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccce
Confidence 688999999999886 888999999999999999887766554344445689999988 4555566677765 457
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a~- 1151 (1953)
++..+.|........ .......+|+|+|++++.... ..+.-....++||||||++.+.+ ..+...+..++..
T Consensus 115 ~~~~~~g~~~~~~~~---~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~ 191 (222)
T d2j0sa1 115 QCHACIGGTNVGEDI---RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 191 (222)
T ss_dssp CEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEeecccchhhH---HHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCC
Confidence 777777765544332 122456799999999987642 23333467799999999997643 3455566666544
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
..+++|||-
T Consensus 192 Q~ilfSAT~ 200 (222)
T d2j0sa1 192 QVVLISATL 200 (222)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEEeC
Confidence 478889994
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.16 E-value=1.5e-10 Score=125.15 Aligned_cols=153 Identities=22% Similarity=0.242 Sum_probs=107.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
.+.|.|..++..++. .+.+.|+...+|+|||+.++..+..... ......+||+||+. ++.++...+.++. .+.
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccc-cccCcceEEEeeccccchhhhhhhhhhcccCCe
Confidence 578999999988775 2236777899999999988777665543 23334689999977 7778888887775 356
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a-~ 1151 (1953)
++..+.|......... .....+|+|+|++.+.+.. ..+.-.+..++||||||++.+. ...+.+.+..++. .
T Consensus 102 ~v~~~~g~~~~~~~~~----~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~ 177 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIK----ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 177 (208)
T ss_dssp CEEEECTTSCHHHHHH----HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred EEEEeeCCCChHHHHH----hcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCC
Confidence 7777877765443321 1236799999999886542 2333346789999999998543 3345555556644 3
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
..+++|||-
T Consensus 178 Q~i~~SAT~ 186 (208)
T d1hv8a1 178 RILLFSATM 186 (208)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEccC
Confidence 578889994
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.1e-10 Score=126.35 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
.+.|.|..++..++. +.+.|++.++|+|||+..+..+...+........+||+||+. +..|-..++.++. ..
T Consensus 25 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 688999999998886 889999999999999998887766554455556789999987 4455455555553 45
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhccc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a- 1150 (1953)
..+....|........ .......+|||+|++.+.... ..+...+..++||||||+|.+. ...+...+..++.
T Consensus 101 ~~~~~~~g~~~~~~~~---~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~ 177 (206)
T d1veca_ 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred cccccccCCccHHHHH---HHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCCC
Confidence 6666666655443222 233567899999999987653 2333446789999999999764 3345555556644
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
...+++|||-
T Consensus 178 ~Q~~l~SAT~ 187 (206)
T d1veca_ 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEEecC
Confidence 4578889994
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.14 E-value=2.1e-11 Score=125.31 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=80.8
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
..+.++||||+....++.|.+.|...|+.+..+||+++. +.|+.+.. -+|++|+++++||| ..++.||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~~~~---~vlvaTd~~~~GiD-~~v~~Vi~ 101 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGD---VVVVATDALMTGFT-GDFDSVID 101 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTTSSC---EEEEESSSSCSSSC-CCBSEEEE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhhhhc---ceeehhHHHHhccc-cccceEEE
Confidence 356799999999999999999999999999999999985 34665433 37999999999999 88999988
Q ss_pred cC----CCCCchhHHhhhhcccccCCcc
Q 000169 1422 YD----PDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1422 fD----ppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|| +|+++..|+|++||++| |.+.
T Consensus 102 ~~~~~~~P~~~~~y~qr~GR~gR-g~~G 128 (138)
T d1jr6a_ 102 CNTSDGKPQDAVSRTQRRGRTGR-GKPG 128 (138)
T ss_dssp CSEETTEECCHHHHHHHHTTBCS-SSCE
T ss_pred EEecCCCCCCHHHHHhHhccccC-CCCc
Confidence 55 68999999999999999 8777
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.4e-10 Score=126.73 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
.|.+-|..++.-+..-...+. +-+|+-+||+|||.+++..+...+. ....++|+||.. |..|+...|.++++.
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~---~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~ 131 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFANW 131 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTTT
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH---cCCceEEEccHHHhHHHHHHHHHHHHhhC
Confidence 678899999988887666444 5699999999999999888876663 445899999976 678899999999886
Q ss_pred -CeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh-cccc
Q 000169 1076 -VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (1953)
Q Consensus 1076 -lkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~a~ 1151 (1953)
+.+.++++... .+..++ ..+..+..+|||.|...+.... .-.++.+|||||-|++. .+.-..+.. ....
T Consensus 132 ~~~v~~l~~~~~~~~~~~~~-~~~~~g~~~iviGths~l~~~~---~f~~LgLiIiDEeH~fg---~kQ~~~l~~~~~~~ 204 (233)
T d2eyqa3 132 PVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRFG---VRHKERIKAMRANV 204 (233)
T ss_dssp TCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGSC---HHHHHHHHHHHTTS
T ss_pred CCEEEeccCcccchhHHHHH-HHHhCCCCCEEEeehhhhccCC---ccccccceeeechhhhh---hHHHHHHHhhCCCC
Confidence 46667777543 333433 3466788999999998886432 22468899999999963 222223332 2345
Q ss_pred eeEEecccCCCCCH
Q 000169 1152 RRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL 1165 (1953)
+.|++||||+..++
T Consensus 205 ~~l~~SATPiprtl 218 (233)
T d2eyqa3 205 DILTLTATPIPRTL 218 (233)
T ss_dssp EEEEEESSCCCHHH
T ss_pred CEEEEecchhHHHH
Confidence 79999999987653
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.10 E-value=3.4e-12 Score=141.43 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec--
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI-- 1404 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST-- 1404 (1953)
.-|+..|..+|.+ -|.++||||++..+++.|.++|... +||+++..+|.+++++|..++.+ +|++|
T Consensus 11 ~~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a 78 (248)
T d1gkub2 11 DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAH 78 (248)
T ss_dssp CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC
T ss_pred chHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEecc
Confidence 3466777777764 4789999999999999999999753 79999999999999999987666 67777
Q ss_pred --cccccccCCcc-CCeEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1405 --RAAGRGLNLQS-ADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1405 --rAGGeGLNLQa-ADtVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
+++++|||++. +++||+||+|| +.|++||++|.|+...
T Consensus 79 ~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~ 119 (248)
T d1gkub2 79 YYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMV 119 (248)
T ss_dssp ------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHH
T ss_pred ccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceE
Confidence 77899999995 99999999998 4578999999997644
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.07 E-value=7.7e-10 Score=122.24 Aligned_cols=162 Identities=22% Similarity=0.292 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---------CCCCCeEEEechH-HHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---------GNYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---------g~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
..+.|.|..++..++. +.+.++..++|+|||+..+..+...+... .....+||+||+. ++.|+..+
T Consensus 42 ~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~ 117 (238)
T d1wrba1 42 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117 (238)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchhee
Confidence 3789999999998886 88999999999999999887666544211 1223589999987 77888888
Q ss_pred HHHHCCC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHH
Q 000169 1069 LHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLA 1142 (1953)
Q Consensus 1069 f~KwaPs--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKls 1142 (1953)
+..+... +++..+.|........ .......+|||+|++.+.... ..+.-.++.++||||||++... ...+.
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~ 194 (238)
T d1wrba1 118 SQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 194 (238)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred eeecccCCCcEEEEEeccchhhHHH---hhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHH
Confidence 8887643 6677776655443222 233467899999999997642 2333457889999999998643 34455
Q ss_pred HHhhhcc-----cceeEEecccCCCCCHHHH
Q 000169 1143 RDLDRYR-----CQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1143 raLk~L~-----a~~RLLLTGTPLQNnL~EL 1168 (1953)
..+..+. ....+++||| +..++.+|
T Consensus 195 ~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l 224 (238)
T d1wrba1 195 KIIEESNMPSGINRQTLMFSAT-FPKEIQKL 224 (238)
T ss_dssp HHHHSSCCCCGGGCEEEEEESS-CCHHHHHH
T ss_pred HHHHHhcCCCCCCCEEEEEeee-CCHHHHHH
Confidence 5555442 2246899999 44444443
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.8e-10 Score=123.27 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=107.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.+.|.|..++..++. +.+.|++.++|+|||+.++..+...+........+||+||+. ++.|-..++.++.. .+
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 688999999999886 788999999999999999877766654444555689999987 66666777777754 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a~- 1151 (1953)
.+....+........ ........+|+|+|++.+.... ..+......++||||||++.+. ...+...+..++.+
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 110 SCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp CEEEECC--CCCSTT--TSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEeeecccchhHHH--HHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 444444433222111 1122356799999999887653 3334446789999999999654 34455555666544
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
..+++|||=
T Consensus 188 Q~il~SAT~ 196 (218)
T d2g9na1 188 QVVLLSATM 196 (218)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEecC
Confidence 477889985
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=2.9e-09 Score=114.53 Aligned_cols=154 Identities=20% Similarity=0.192 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHH--CCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKW--LPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw--aPsl 1076 (1953)
.+.|.|..++..++. +.+.|+..++|+|||+..+..+...+.........++++|...+ .+-...+..+ ..++
T Consensus 23 ~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 23 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 688999999998887 78899999999999988876665554434455567888887643 3322223332 3567
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc--hhHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a-~ 1151 (1953)
++....|........ .......+|+|+|++.+.+... .+.-.+..++||||||+|.+. ...+...+..++. .
T Consensus 99 ~~~~~~g~~~~~~~~---~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~ 175 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175 (206)
T ss_dssp CEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEeecCccchhhHH---HHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCC
Confidence 888887765544322 2335678999999999876532 333346789999999999874 3345555556654 3
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
..+++|||-
T Consensus 176 Q~il~SATl 184 (206)
T d1s2ma1 176 QSLLFSATF 184 (206)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEEeC
Confidence 578889993
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.96 E-value=1.2e-09 Score=116.98 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=105.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHCC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWLP- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL----~QW~~Ef~KwaP- 1074 (1953)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+.............++++|...+ ..|.....++..
T Consensus 23 ~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 23 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhccccc
Confidence 689999999999887 88899999999999998877666555444445567888876533 345555555543
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhc
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L 1148 (1953)
...+....+..+..... .......+|+|+|++.+.... ......+..++||||||++.+.. ..+...+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~ 175 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 175 (209)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccccccchhhHHHH---HHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHC
Confidence 23344444443332211 123456899999999987642 22333467899999999997543 3444555555
Q ss_pred cc-ceeEEecccCCCCCHHHH
Q 000169 1149 RC-QRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1149 ~a-~~RLLLTGTPLQNnL~EL 1168 (1953)
+. ...+++|||- .+++.++
T Consensus 176 ~~~~Q~il~SATl-~~~v~~l 195 (209)
T d1q0ua_ 176 PKDLQMLVFSATI-PEKLKPF 195 (209)
T ss_dssp CTTCEEEEEESCC-CGGGHHH
T ss_pred CCCCEEEEEEccC-CHHHHHH
Confidence 44 4578889994 4444443
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.96 E-value=7.3e-10 Score=119.81 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC------------------------------CeEEeecCCCCHHH
Q 000169 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------------LVYRRIDGTTSLED 1382 (1953)
Q Consensus 1333 LdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG------------------------------ikylRLDGsTs~ee 1382 (1953)
+..++.++...++.+||||..+..++.++..|.... ..+...||+++.++
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 334556666678999999999876665555544210 11455799999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-------cCCCCCchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDPNPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi-------fDppWNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
|..+.+.|+.+... +|++|.+++.|||++..++||. ++.++++..|.|+.|||+|.|....-.+|.+.
T Consensus 109 r~~ie~~f~~g~i~---vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~ 183 (201)
T d2p6ra4 109 RRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183 (201)
T ss_dssp HHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred HHHHHHHHhCCCce---EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEe
Confidence 99999999986655 7999999999999997777775 56678999999999999999986555555443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=2.9e-09 Score=115.67 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.+.|.|..++.-++. +.+.|+...+|+|||+..+..+...+........+||+||+. ++.+-...+..+.. ..
T Consensus 32 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccccc
Confidence 789999999998886 888999999999999998776665554444555789999987 55555555555543 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC--chhHHHHHhhhcccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~a~- 1151 (1953)
.+....+....... .....+.+|+|+|++.+.... ..+.-.+..++||||||++.+ ....+...+..++..
T Consensus 108 ~~~~~~~~~~~~~~----~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~ 183 (212)
T d1qdea_ 108 KVHACIGGTSFVED----AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 183 (212)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceeeEeeccchhHH----HHHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCCC
Confidence 44444444332222 122346799999999887652 233334678999999999965 344555556666543
Q ss_pred eeEEecccC
Q 000169 1152 RRLLLTGTP 1160 (1953)
Q Consensus 1152 ~RLLLTGTP 1160 (1953)
..+++|||-
T Consensus 184 Q~vl~SAT~ 192 (212)
T d1qdea_ 184 QVVLLSATM 192 (212)
T ss_dssp EEEEEESSC
T ss_pred eEEEEEeeC
Confidence 478889984
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=3.5e-10 Score=123.29 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHH--------HHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDI--------LEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDI--------Led~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
.|...+...+.+....|+.|.+.|......+. ..+.|.. .++++..+||.|+.++|.+++.+|.+++.+
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 34454555555556688899888876543332 2222222 266788899999999999999999988777
Q ss_pred ccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEE
Q 000169 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1397 ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+|+||.+.++|||+++|++||++|++ |....+.|..||++|-|.+..|..+
T Consensus 93 ---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~ 144 (206)
T d1gm5a4 93 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 144 (206)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred ---EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEee
Confidence 89999999999999999999999998 6899999999999999998887544
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.79 E-value=9.9e-10 Score=124.75 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=83.7
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHH----------HHHHHHhhcCCCCccEEEEecccccc---
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR----------ESAIVDFNSHDSDCFIFLLSIRAAGR--- 1409 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeR----------qeaIerFNs~ds~ifVfLLSTrAGGe--- 1409 (1953)
.+.|+||||+.+..++.|...|...|++...+||+++.+.| ..++..|..++.+ +|+.|++..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~d---vVVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD---SVIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBS---EEEECCEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCc---EEEEEeehhccCC
Confidence 47899999999999999999999999999999999998876 4577888865544 5677777655
Q ss_pred ccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1410 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1410 GLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|+|+....+||+||.|.|+..|+||+||++| |...
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G 146 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG 146 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE
T ss_pred CCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc
Confidence 7888889999999999999999999999999 7555
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=2.8e-08 Score=108.35 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
.+..+...|..++ ..|+.|.+.|.....++.+.+.|... ++++..+||.|+.+++.+++.+|.+++.+ +|+||.
T Consensus 16 ~~~~i~~~I~~El-~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~Tt 91 (211)
T d2eyqa5 16 DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTT 91 (211)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESS
T ss_pred CHHHHHHHHHHHH-HcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEeh
Confidence 3444555555554 68999999999888888888887764 78899999999999999999999987777 899999
Q ss_pred ccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+...|||+++|+++|+++.+ |-..+..|-.||++|-+...-|..++
T Consensus 92 vIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 92 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred hhhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEe
Confidence 99999999999999999999 79999999999999988776665544
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.13 E-value=3.6e-06 Score=95.92 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=73.9
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
+.+.++||||.....++.++..|+..|++++.|||.+..+++. +|.+++.+ |||+|++++.|||+ .+++||-
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~---~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPD---FILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCS---EEEESSSTTCCTTC-CCSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcC---EEEEechhhhceec-CceEEEe
Confidence 4577899999999999999999999999999999999987765 45555544 89999999999999 5998884
Q ss_pred ---------cCCC----------CCchhHHhhhhcccccCCc
Q 000169 1422 ---------YDPD----------PNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1422 ---------fDpp----------WNP~~d~QAiGRAhRIGQK 1444 (1953)
||+. .+.+.-.|+.||++|.+..
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4432 4556668999999998644
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=1.5e-05 Score=84.33 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..+..-+.++...|..|||||.+....+.|..+|...|+++..++.... ++-.+++. .. +....+.|+|.
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~A---g~~g~VtIATN 90 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-EA---GQKGAVTIATN 90 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-TT---TSTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-hc---cCCCceeehhh
Confidence 346888888888888999999999999999999999999999999999997653 33333443 22 22335899999
Q ss_pred ccccccCCcc--------CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQS--------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQa--------ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.+|+|.|+.- -=+||.-..+-|...+.|..||++|.|.......|.
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~ 144 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 144 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEE
Confidence 9999998753 238999999999999999999999999988775553
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.64 E-value=0.0088 Score=64.40 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=103.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..+..-+..+...|..|||.+..+..-+.|..+|...|+++-.|+.... +.-..+|.+-= ..-.+-|+|
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAqAG----~~GaVTIAT 89 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAVAG----RRGGVTVAT 89 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHTTT----STTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHhcc----cCCcEEeec
Confidence 3457889999889999999999999999999999999999999999999998743 33344554432 223488999
Q ss_pred cccccccCCcc----------------------------------------------------CCeEEEcCCCCCchhHH
Q 000169 1405 RAAGRGLNLQS----------------------------------------------------ADTVIIYDPDPNPKNEE 1432 (1953)
Q Consensus 1405 rAGGeGLNLQa----------------------------------------------------ADtVIifDppWNP~~d~ 1432 (1953)
..+|+|.|+.= -=+||-....-+-..+.
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 99999999731 23899999999999999
Q ss_pred hhhhcccccCCcceEEEEEEehhhhhh
Q 000169 1433 QAVARAHRIGQKREVKVIYMEAVVDKI 1459 (1953)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvTVEEkI 1459 (1953)
|-.||++|.|.....++|. ++++.+
T Consensus 170 QLRGRsGRQGDPGsSrFfl--SLeDdL 194 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYL--SLGDEL 194 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEE--ETTSHH
T ss_pred cccccccccCCCccceeEE--eccHHH
Confidence 9999999999988876653 444444
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.56 E-value=0.013 Score=65.28 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=94.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...+|-|+.|.--|.. |.|.-..||=|||+++. +.+++....+ +++-||+.+..|. .|...+-+|+
T Consensus 78 G~RhyDVQLiGgi~L~~------G~iaem~TGEGKTL~a~-l~a~l~al~g--~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 78 GMFPFKVQLMGGVALHD------GNIAEMKTGEGKTLTST-LPVYLNALTG--KGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp SCCCCHHHHHHHHHHHT------TSEEECCTTSCHHHHHH-HHHHHHHTTS--SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEehhHHHHHHHHHh------hhheeecCCCcchhHHH-HHHHHHHhcC--CCceEEecCccccchhhhHHhHHHHHc
Confidence 33566678888765543 55888999999998874 4445544333 3556666666554 4999999988
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhccccEEEEeHHHHHhh---------hhcccccCccEEEcccccccCC------
Q 000169 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKD------ 1136 (1953)
Q Consensus 1074 PslkVvvy~Gs--~deRk~l~~qei~~~~fdVVITTYEsL~kd---------~s~L~kikWd~VIIDEAHrLKN------ 1136 (1953)
+ +.|-+.... ...|+. .-..||+-+|-.-+.-| ...+....+.+.||||++.+.=
T Consensus 149 G-lsvg~~~~~~~~~~r~~-------~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartp 220 (273)
T d1tf5a3 149 G-LTVGLNLNSMSKDEKRE-------AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 220 (273)
T ss_dssp T-CCEEECCTTSCHHHHHH-------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred C-CCccccccccCHHHHHH-------HhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCc
Confidence 4 444433322 223322 23568988887655322 2233345789999999987631
Q ss_pred ---------chhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHh
Q 000169 1137 ---------RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1137 ---------~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
-.+..++.+.++. ++.-++|||- .....|+|.+.+
T Consensus 221 liisg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 221 LIISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred eEeccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 0111223332222 4677899996 445777777665
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0041 Score=71.83 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHH-HHHHHHHH---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVN-WKSELHKW---LP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~Q-W~~Ef~Kw---aP 1074 (1953)
.+-+.|+.++.-++. +.-.||.-..|+|||.++..++..+..... ...++++++|+..... -...+.+. .+
T Consensus 148 ~~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~ 223 (359)
T d1w36d1 148 DEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 223 (359)
T ss_dssp TSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred ccccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcC
Confidence 466789999987664 445789999999999998888777765432 3347889999875433 22222211 11
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeE
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RL 1154 (1953)
......+....+. ......--.......+..+ ......+++|||||+-.+- ...+...+..+....+|
T Consensus 224 ~~~~~~~~~~~~~--------~t~~~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~~~l 291 (359)
T d1w36d1 224 LTDEQKKRIPEDA--------STLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARV 291 (359)
T ss_dssp CCSCCCCSCSCCC--------BTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEE
T ss_pred chhhhhhhhhhhh--------hHHHHHHhhhhcchHHHHh--hhcccccceeeehhhhccC--HHHHHHHHHHhcCCCEE
Confidence 1000000000000 0000000001111122222 1233578999999998872 23455666667777899
Q ss_pred EecccCCCC
Q 000169 1155 LLTGTPLQN 1163 (1953)
Q Consensus 1155 LLTGTPLQN 1163 (1953)
+|.|=|-|-
T Consensus 292 ILvGD~~QL 300 (359)
T d1w36d1 292 IFLGDRDQL 300 (359)
T ss_dssp EEEECTTSG
T ss_pred EEECChhhc
Confidence 999988653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.009 Score=63.38 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHC-CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL-PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kwa-Ps 1075 (1953)
.++|+|...++.+...+.++. + -||+.+.|+|||..+..++.++....+......-.|+.. ..+.... ++
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~------~~i~~~~~~~ 75 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGC------QLMQAGTHPD 75 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHH------HHHHHTCCTT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchh------hhhhhccccc
Confidence 478999999998888776543 3 478999999999999988887763322222222223221 2222222 22
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc-ccccCccEEEcccccccCCc-hhHHHHHhhhccccee
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRR 1153 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~-L~kikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~R 1153 (1953)
+..+.+.+...... ...+ ..+...... -..-.+.+|||||+|.|-.. ...+.+.+.......+
T Consensus 76 ~~~~~~~~~~~~i~---~~~i------------r~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~ 140 (207)
T d1a5ta2 76 YYTLAPEKGKNTLG---VDAV------------REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETW 140 (207)
T ss_dssp EEEECCCTTCSSBC---HHHH------------HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEE
T ss_pred cchhhhhhcccccc---cchh------------hHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccce
Confidence 22222111111000 0000 011111111 12236889999999999532 3455566666666677
Q ss_pred EEecccCCCC
Q 000169 1154 LLLTGTPLQN 1163 (1953)
Q Consensus 1154 LLLTGTPLQN 1163 (1953)
++|+.+-...
T Consensus 141 fIl~t~~~~~ 150 (207)
T d1a5ta2 141 FFLATREPER 150 (207)
T ss_dssp EEEEESCGGG
T ss_pred eeeeecChhh
Confidence 7887765443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.11 Score=55.42 Aligned_cols=133 Identities=19% Similarity=0.081 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEE
Q 000169 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy 1081 (1953)
|.+.+.+|..++.++ .+ -||..+.|+|||..+.+++..+............++ .++. ++..- ....++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~-----~~~~-~i~~~-~~~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC-----DNCR-EIEQG-RFVDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS-----HHHH-HHHHT-CCTTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc-----hHHH-HHHcC-CCCeEEEe
Confidence 456666666655433 23 478999999999988877766653222221111112 2221 12211 11223333
Q ss_pred ecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc----ccccCccEEEcccccccC-CchhHHHHHhhhcccceeEEe
Q 000169 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLL 1156 (1953)
Q Consensus 1082 ~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~----L~kikWd~VIIDEAHrLK-N~~SKlsraLk~L~a~~RLLL 1156 (1953)
....... .+.+..-... -...++.+|||||+|.|. +....+.+.+..+....+++|
T Consensus 90 ~~~~~~~-------------------i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il 150 (239)
T d1njfa_ 90 DAASRTK-------------------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 150 (239)
T ss_dssp ETTCSSS-------------------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred cchhcCC-------------------HHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 2221110 1111111111 112357899999999983 233346666666666677888
Q ss_pred cccCCCC
Q 000169 1157 TGTPLQN 1163 (1953)
Q Consensus 1157 TGTPLQN 1163 (1953)
+.+-...
T Consensus 151 ~tn~~~~ 157 (239)
T d1njfa_ 151 ATTDPQK 157 (239)
T ss_dssp EESCGGG
T ss_pred EcCCccc
Confidence 7765333
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.028 Score=59.63 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=29.0
Q ss_pred CccEEEcccccccCCchh-HHHHHhhhcccceeEEecccCCCCC
Q 000169 1122 DWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~S-KlsraLk~L~a~~RLLLTGTPLQNn 1164 (1953)
.+.++||||+|.+.+... .+.+.+..+....++++|.+-...-
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccccccccchhhhcccccccccccceeeeccccch
Confidence 578999999999954332 3445555556667788887665443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=93.61 E-value=0.077 Score=62.11 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000169 1004 YQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1004 YQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy 1081 (1953)
-|=++|+-++...+.+. ..+|.--+|+|||+.+.+++..+ .+|+|||||+. ...+|.+++..|+|...+..+
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 47777877777666554 35677789999998887776542 35999999976 678899999999998877765
Q ss_pred e
Q 000169 1082 V 1082 (1953)
Q Consensus 1082 ~ 1082 (1953)
.
T Consensus 89 ~ 89 (413)
T d1t5la1 89 V 89 (413)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.05 E-value=0.11 Score=54.76 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH---HHHHHHHHHHHCCCCeEEEE
Q 000169 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV---LVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL---L~QW~~Ef~KwaPslkVvvy 1081 (1953)
|++-+..++..- ...+-|+..+.|+|||-.++.+..++........-+++|.|... +.+ .+++.+++
T Consensus 2 ~~~~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~-IR~i~~~~-------- 71 (198)
T d2gnoa2 2 QLETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFL-------- 71 (198)
T ss_dssp HHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHH--------
T ss_pred HHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHH-HHHHHHHH--------
Confidence 555565555522 34456999999999999998888665432222222555555310 111 00111110
Q ss_pred ecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc-hhHHHHHhhhcccceeEEeccc
Q 000169 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1082 ~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
...+ ....|+++||||||+|... ...+.+.|.......+++|+.+
T Consensus 72 -------------------------------~~~~--~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~ 117 (198)
T d2gnoa2 72 -------------------------------NYSP--ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 117 (198)
T ss_dssp -------------------------------TSCC--SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred -------------------------------hhCc--ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccC
Confidence 0011 1246899999999999532 2345566666666667777644
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.34 E-value=0.17 Score=54.50 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH-HHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL-VNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL-~QW~~Ef~Kw 1072 (1953)
+|-|-|.++|.|. ....++-...|+|||.+.+..+.+++...+ ....+||++++..+ ..-...+.+.
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~ 69 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 69 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHh
Confidence 4889999999762 233577788999999999988888886543 34579999997654 3344444443
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=89.13 E-value=0.86 Score=52.90 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIY 1080 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvv 1080 (1953)
.-|-++|+-++...+.+.+ ..|..-+|++||+.+.+++..+ .+|+|||||.. ...+|.+++..|+++..+..
T Consensus 11 ~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 11 GDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcCccceee
Confidence 4577778877777776665 4677789999998887766432 35999999976 67889999999998877766
Q ss_pred E
Q 000169 1081 Y 1081 (1953)
Q Consensus 1081 y 1081 (1953)
|
T Consensus 85 f 85 (408)
T d1c4oa1 85 F 85 (408)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.98 E-value=0.25 Score=51.67 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=30.6
Q ss_pred ccccCccEEEcccccccCCch-hHHHHHhhhcccceeEEecccCCCCCH
Q 000169 1118 LSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1118 L~kikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGTPLQNnL 1165 (1953)
....++.+||+||+|++.... ..+...+.......+++++.+....-+
T Consensus 97 ~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 97 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 344578899999999996432 233344455566667777776654433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.23 E-value=0.17 Score=52.83 Aligned_cols=43 Identities=28% Similarity=0.467 Sum_probs=27.6
Q ss_pred ccCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCC
Q 000169 1120 KVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1120 kikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQ 1162 (1953)
...+.++||||+|.+-.. ...+.+.+.......+++++.+...
T Consensus 97 ~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH 140 (227)
T ss_dssp SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHH
Confidence 346779999999998543 2345555555555666777665433
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.04 E-value=0.61 Score=50.43 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=30.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
.+.||.-+.|+|||..+=++...+ ..+++.|-+..++..|..+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~~g~ 85 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFVGV 85 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSCTTH
T ss_pred ceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhhhccccH
Confidence 356899999999998887666432 2477777777777655433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.95 E-value=1.6 Score=47.79 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=72.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHH----HHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL----DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~L----DILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..|||..+....+......|..|++-+.....+ ..+..+|...|+.+..++|+++..+|.+++...++++.+ +
T Consensus 113 vGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---i 189 (264)
T d1gm5a3 113 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---V 189 (264)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---E
T ss_pred ccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC---E
Confidence 358999998888888888999999999876554 445666666689999999999999999999999976655 4
Q ss_pred EEecccc-ccccCCccCCeEEE
Q 000169 1401 LLSIRAA-GRGLNLQSADTVII 1421 (1953)
Q Consensus 1401 LLSTrAG-GeGLNLQaADtVIi 1421 (1953)
++.|+++ -..+.+.+...||+
T Consensus 190 iIGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 190 VIGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp EEECTTHHHHCCCCSCCCEEEE
T ss_pred EEeehHHhcCCCCccccceeee
Confidence 5555554 44566656666665
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.79 E-value=1 Score=46.68 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=29.4
Q ss_pred ccCccEEEcccccccCCchh-HHHHHhhhcccceeEEecccCCCCCHHHH
Q 000169 1120 KVDWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1120 kikWd~VIIDEAHrLKN~~S-KlsraLk~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
...+.++||||+|.+..... .+...+.......+++++-+.....+..|
T Consensus 106 ~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l 155 (237)
T d1sxjd2 106 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 155 (237)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccc
Confidence 34677999999999965332 33444444555566666655544444444
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=85.64 E-value=1.6 Score=47.09 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=75.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..|||.++....+......|..|+|-+.......-+...|+. .++.+..++|.++..+|.+++..+.+++.+ +
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---i 161 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---I 161 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---E
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---E
Confidence 458999999999988889999999999988777766666664 478899999999999999999999987666 6
Q ss_pred EEecccccc-ccCCccCCeEEE
Q 000169 1401 LLSIRAAGR-GLNLQSADTVII 1421 (1953)
Q Consensus 1401 LLSTrAGGe-GLNLQaADtVIi 1421 (1953)
|+.|+++-. .+.+...-.||+
T Consensus 162 viGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 162 LIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp EEECTHHHHSCCCCSSEEEEEE
T ss_pred EEeehhhhccCCccccccceee
Confidence 677776543 466655555555
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.62 E-value=0.47 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+-||..+.|+|||..+-+++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 469999999999988877776553
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.66 E-value=1.2 Score=49.00 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1009 LQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1009 L~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
+..|+.... ...|.||.-+.|.|||..+-.+...+..
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence 444544432 3457899999999999888777766654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.59 E-value=1.3 Score=46.77 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=22.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
...|.||.-+.|.|||..+-.++..+..
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~ 69 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence 3457899999999999888777766654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=82.17 E-value=0.85 Score=49.50 Aligned_cols=59 Identities=24% Similarity=0.101 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~Q 1064 (1953)
.|-+-|.++|.+. ....++....|+|||.+.+.-+++++.... ....+||++++....+
T Consensus 11 ~L~~eQ~~~v~~~------~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~ 70 (318)
T d1pjra1 11 HLNKEQQEAVRTT------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70 (318)
T ss_dssp TSCHHHHHHHHCC------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH
T ss_pred hCCHHHHHHHhCC------CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHH
Confidence 4889999999742 234567777899999999998888886432 2246899998775433
|